Citrus Sinensis ID: 006955
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 624 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY02 | 781 | Pentatricopeptide repeat- | yes | no | 0.955 | 0.763 | 0.390 | 1e-139 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 0.921 | 0.815 | 0.358 | 1e-118 | |
| Q9FXB9 | 704 | Pentatricopeptide repeat- | no | no | 0.903 | 0.801 | 0.357 | 1e-116 | |
| O64766 | 627 | Pentatricopeptide repeat- | no | no | 0.935 | 0.931 | 0.335 | 1e-110 | |
| Q9C8L6 | 717 | Pentatricopeptide repeat- | no | no | 0.979 | 0.852 | 0.319 | 1e-103 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.937 | 0.839 | 0.342 | 1e-103 | |
| P0C7R0 | 761 | Pentatricopeptide repeat- | no | no | 0.940 | 0.771 | 0.332 | 1e-98 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.942 | 0.748 | 0.346 | 9e-98 | |
| O04590 | 656 | Pentatricopeptide repeat- | no | no | 0.875 | 0.832 | 0.334 | 1e-97 | |
| Q9FHF9 | 697 | Pentatricopeptide repeat- | no | no | 0.866 | 0.776 | 0.347 | 5e-95 |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/599 (39%), Positives = 366/599 (61%), Gaps = 3/599 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MR R EA +F +MP+ +V++N MI GY +NG + A LF++MPERD+ ++N +I
Sbjct: 75 MRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIK 134
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ N+ A+E+F+ M RDV +WN+M+SGY NG +D+A VF MP K+ VSWN +
Sbjct: 135 GYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V +M+ A FK + SW ++ G V++ +IVEAR+ FD M +DV +WN
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN 254
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
+I GY +G + A LF + +D+ +W +++G + +R ++ A F +MPE E +
Sbjct: 255 TIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS 314
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN++++ ++ ++ A + P N+++W +I GY + G++ A +F+ M RD
Sbjct: 315 WNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W MI G ++ E L+ FVQM+ G + ++F+S L+ C+D+ L+LG+Q+H +
Sbjct: 375 VSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 434
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K V NA++ MY +CG+I+ A F + DI+SWN++I G + HG+ E A
Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVA 494
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L FE M+ KPDD T V VLSACS+ GLVD+GR YF M Y + P S HY C+VD
Sbjct: 495 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVD 554
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR GL+++A NL+ + E +WG LLGA R+H N ++ E A +++ +EP N
Sbjct: 555 LLGRAGLLEDAHNLMKNM---PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPK 599
SG+Y++L+ +Y S GR D ++ +M++ GVKK PG SWI+I + H F GD HP+
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/611 (35%), Positives = 349/611 (57%), Gaps = 36/611 (5%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
R +I EA+ LFD + +WN M+ GYF N
Sbjct: 29 RIGKIHEARKLFDSCDSKSISSWNSMVAGYFAN--------------------------- 61
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI 121
LM D A+++FD M R++++WN ++SGY+ NG IDEA +VF MP ++VVSW ++
Sbjct: 62 LMPRD----ARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALV 117
Query: 122 GALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNL 181
V+ ++D+AES F +M ++ SWT+M+ G +++GRI +A KL++ +P KD A
Sbjct: 118 KGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTS 177
Query: 182 MIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW 241
MI G G V A ++F +M +R + +W ++ G + R+D A F MPE E +W
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSW 237
Query: 242 NSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT 301
S++ ++NG +++A E P + + +I G + GE+ A +VF+ M R+
Sbjct: 238 TSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDA 297
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQA 361
W +I N E L F+ M++ G P T S+L++C+ L +L G+Q+HAQ
Sbjct: 298 SWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQL 357
Query: 362 IKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKAL 421
++ + V++ ++TMY +CG + + L F P DII WNSII G A HG E+AL
Sbjct: 358 VRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEAL 417
Query: 422 ELFERMRLT-DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
++F M L+ KP+++TFV LSACSYAG+V++G ++ M++ + ++P +AHY C+VD
Sbjct: 418 KVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVD 477
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
+LGR G +EAM +++ + +E VWG+LLGACR H+ + V E ++++E+EP N
Sbjct: 478 MLGRAGRFNEAMEMIDSM---TVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPEN 534
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGD-SSHPK 599
SG Y++L+ MY S GR D + MK V+K PGCSW ++ + H F G +SHP+
Sbjct: 535 SGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPE 594
Query: 600 FHRLRYLLNLL 610
+ +L+ L
Sbjct: 595 QESILKILDEL 605
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/599 (35%), Positives = 334/599 (55%), Gaps = 35/599 (5%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
R +I EA+ FD + + +WN ++ GYF NG +P+
Sbjct: 29 RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNG-----------LPKE----------- 66
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI 121
A+++FD M R+VV+WN ++SGY+ N +I EA VF MP ++VVSW ++
Sbjct: 67 ---------ARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMV 117
Query: 122 GALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNL 181
+ + AES F M R+ SWT+M GL+ +GRI +ARKL+D MP KDV A
Sbjct: 118 KGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTN 177
Query: 182 MIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW 241
MI G G V A +F +M +R++ +W +I G + R+D A F+ MPE E +W
Sbjct: 178 MIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSW 237
Query: 242 NSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT 301
S++ +G +++A + E P + + +IVG+ E+GE+ A +VF+LM RD
Sbjct: 238 TSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNA 297
Query: 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQA 361
W MI E L F QM++ G P + S+L++C+ L +L GRQ+HA
Sbjct: 298 TWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Query: 362 IKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKAL 421
++ + V++ ++TMY +CG + A L F DII WNSII G A HG E+AL
Sbjct: 358 VRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEAL 417
Query: 422 ELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL 481
++F M + P+ +T + +L+ACSYAG +++G F+ M++K+ + P HY+C VD+
Sbjct: 418 KIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDM 477
Query: 482 LGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541
LGR G +D+AM L+ + I+ TVWGALLGAC+ H+ + + E+A +++ E EP+N+
Sbjct: 478 LGRAGQVDKAMELIESM---TIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNA 534
Query: 542 GVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGD-SSHPK 599
G Y++L+ + S + D + M+ N V K PGCSWI++ H+F G +HP+
Sbjct: 535 GTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPE 593
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/608 (33%), Positives = 353/608 (58%), Gaps = 24/608 (3%)
Query: 28 IRGYFKNGFL------DNAMCLFNQMPERDMFTYNT---------VIAGLMQSDNVQGAK 72
+R Y+K + D ++ LFN + R +++ ++ +I L + + A+
Sbjct: 9 LRSYYKRSSVFPSSDNDRSVQLFNLV--RSIYSSSSRPRVPQPEWLIGELCKVGKIAEAR 66
Query: 73 EVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGM-PLKDVVSWNLVIGALVNCQRMD 131
++FDG+ RDVVTW +I+GY+ G + EA +F + K+VV+W ++ + +++
Sbjct: 67 KLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLS 126
Query: 132 LAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191
+AE F+EM R+V SW M++G + GRI +A +LFD+MP +++ +WN M+ + G
Sbjct: 127 IAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGR 186
Query: 192 VGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRN 251
+ A +LF++M RD+ SW +++GL + ++D A F MPE +WN++I+ +N
Sbjct: 187 IDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQN 246
Query: 252 GLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLG 311
+ EA + P + ASW +I G+ E+ A +F+ M ++V W MI G
Sbjct: 247 NRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYV 306
Query: 312 ENDLGEEGLKFFVQMKESGP-SPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFT 370
EN EE L F +M G P+ T+ S+L+ CSDL L G+QIH K +
Sbjct: 307 ENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNE 366
Query: 371 TVSNAMITMYARCGNIQSALLEFSS--VPIHDIISWNSIICGLAYHGYAEKALELFERMR 428
V++A++ MY++ G + +A F + V D+ISWNS+I A+HG+ ++A+E++ +MR
Sbjct: 367 IVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMR 426
Query: 429 LTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI 488
FKP +T++ +L ACS+AGLV++G +F + L R HYTC+VDL GR G +
Sbjct: 427 KHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRL 486
Query: 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548
+ N +N D +S + +GA+L AC +HN + + + ++V+E +++G Y++++
Sbjct: 487 KDVTNFIN---CDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMS 543
Query: 549 EMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLN 608
+Y + G+RE+A + +MKE G+KK+PGCSW+++ H+F+ GD SHP+F L +L+
Sbjct: 544 NIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILS 603
Query: 609 LLHTEIER 616
L ++ +
Sbjct: 604 DLRNKMRK 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/657 (31%), Positives = 357/657 (54%), Gaps = 46/657 (7%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
RN +QEA+ +F +M R V+W MI Y +NG + A +F++MP R +YN +I
Sbjct: 62 RNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNAMITA 121
Query: 62 LMQSD-NVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK--DVVSWN 118
++++ ++ A E+F + ++ V++ +MI+G+V G DEA ++ P+K D V+ N
Sbjct: 122 MIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASN 181
Query: 119 LVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQA 178
+++ + + + A F+ M ++V S + MV+G + GRIV+AR LFD+M ++V
Sbjct: 182 VLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVIT 241
Query: 179 WNLMIAGYLDNGCVGVAEDLFQKMHD------------------RDLTSWKQ--LINGLV 218
W MI GY G LF +M RD +++ I+GLV
Sbjct: 242 WTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLV 301
Query: 219 NSRRID--------------------AAISYFKQMPETCEKTWNSIISVLIRNGLVKEAH 258
+ ++ A + F M +WNS+I+ L++ + EA+
Sbjct: 302 SRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAY 361
Query: 259 SYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEE 318
EK P ++ SWT++I G+ GE+ +++F +M +D W MI N EE
Sbjct: 362 ELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEE 421
Query: 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378
L +F +M + P++ TF+SVL+ + L L G QIH + +K+ +V N++++
Sbjct: 422 ALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVS 481
Query: 379 MYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438
MY +CGN A FS + +I+S+N++I G +Y+G+ +KAL+LF + + +P+ +T
Sbjct: 482 MYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVT 541
Query: 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI 498
F+ +LSAC + G VD G YF MK+ Y ++P HY C+VDLLGR GL+D+A NL++ +
Sbjct: 542 FLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTM 601
Query: 499 RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558
+ VWG+LL A + H + + E+A ++++ELEP+++ Y++L+++Y G+
Sbjct: 602 PC---KPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNR 658
Query: 559 DAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIE 615
D RI K +KK+PG SWI + H FL+GD S + + L ++ E+E
Sbjct: 659 DCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIGFTLKMIRKEME 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/628 (34%), Positives = 334/628 (53%), Gaps = 43/628 (6%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS 65
+++ + +FDKMPQR+ TWN ++ G K GFLD A LF MPERD T+N++++G Q
Sbjct: 71 LEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 66 DNVQGAKEVFDGMEVRDVV----TWNSMISGYVCNGLIDEALRV-FHGMPLKDVVSWNLV 120
D + A F M V ++ S++S C+GL D V H + K ++
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSA--CSGLNDMNKGVQVHSLIAKSPFLSDVY 188
Query: 121 IG-ALVN----CQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKD 175
IG ALV+ C ++ A+ F EMG R+V SW ++ + G VEA +F M
Sbjct: 189 IGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESR 248
Query: 176 VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE 235
V+ + +A + A + Q++H R + + K L N ++ S
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDK-LRNDIILS--------------- 292
Query: 236 TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELM 295
N+ + + + +KEA + P N+ + T++I GY +A +F M
Sbjct: 293 ------NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKM 346
Query: 296 TTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGR 355
R+V WN +I G +N EE L F +K P + +F ++L C+DL L LG
Sbjct: 347 AERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGM 406
Query: 356 QIHAQAIK------IARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIIC 409
Q H +K V N++I MY +CG ++ L F + D +SWN++I
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMII 466
Query: 410 GLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ 469
G A +GY +ALELF M + KPD IT +GVLSAC +AG V++GR+YF M + +
Sbjct: 467 GFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 470 PRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIA 529
P HYTC+VDLLGR G ++EA +++ E+ ++ +WG+LL AC++H NI +G+
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEM---PMQPDSVIWGSLLAACKVHRNITLGKYV 583
Query: 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHV 589
E+++E+EP+NSG Y++L+ MY G+ ED + M++ GV K+PGCSWI+I HV
Sbjct: 584 AEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHV 643
Query: 590 FLSGDSSHPKFHRLRYLLNLLHTEIERE 617
F+ D SHP+ ++ LL++L E+ E
Sbjct: 644 FMVKDKSHPRKKQIHSLLDILIAEMRPE 671
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 216/650 (33%), Positives = 348/650 (53%), Gaps = 63/650 (9%)
Query: 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAG 61
+ + EA+ LF+ MP+R+ VT N M+ GY K ++ A LF +MP +++ ++ ++
Sbjct: 89 KTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTA 147
Query: 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVI 121
L + A E+FD M R+VV+WN++++G + NG +++A +VF MP +DVVSWN +I
Sbjct: 148 LCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMI 207
Query: 122 GALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNL 181
+ M+ A+ F +M ++V +WT MV G R G + EA +LF +MP +++ +W
Sbjct: 208 KGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTA 267
Query: 182 MIAGY--------------------------------LDNGCVGVAED---LFQKMH--- 203
MI+G+ L C G+ + L +++H
Sbjct: 268 MISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQV 327
Query: 204 --------DRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVK 255
D D K L++ +S I +A S + + ++ N II+ ++NG ++
Sbjct: 328 ISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDL--QSCNIIINRYLKNGDLE 385
Query: 256 EAHSYLEKY-PYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEND 314
A + E+ + SWT++I GY E G+V A +F+ + +D W VMI GL +N+
Sbjct: 386 RAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNE 445
Query: 315 LGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR--NQFTTV 372
L E M G P N+T++ +L+ LD G+ IH K + +
Sbjct: 446 LFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLIL 505
Query: 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432
N++++MYA+CG I+ A F+ + D +SWNS+I GL++HG A+KAL LF+ M +
Sbjct: 506 QNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGK 565
Query: 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492
KP+ +TF+GVLSACS++GL+ +G F MK Y +QP HY ++DLLGR G + EA
Sbjct: 566 KPNSVTFLGVLSACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAE 625
Query: 493 NLLNEIRADGIEVSP--TVWGALLGAC----RIHNNIKVGEIAGERVMELEPNNSGVYLI 546
++ + +P TV+GALLG C R + + E A R++EL+P N+ ++
Sbjct: 626 EFIS-----ALPFTPDHTVYGALLGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVA 680
Query: 547 LTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSS 596
L +Y GR + K + +M GVKK PGCSW+ +N +VFLSGD S
Sbjct: 681 LCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVVNGRANVFLSGDKS 730
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 223/644 (34%), Positives = 346/644 (53%), Gaps = 56/644 (8%)
Query: 25 NVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVV 84
N ++ Y K G+ +A LF++MP R F++NTV++ + ++ E FD + RD V
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 85 TWNSMISGYVCNGLIDEALRVFHGM------PLKDVVSWNLVIGALVNCQRM-DLAESYF 137
+W +MI GY G +A+RV M P + ++ L A C S+
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172
Query: 138 KEMGAR-DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAE 196
++G R +V+ ++N + G + A+ +FD+M +D+ +WN MIA ++ G + +A
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232
Query: 197 DLFQKMHDRDLTSWKQLINGLVNSRRID-AAISYFKQM-------PE---------TC-- 237
F++M +RD+ +W +I+G N R D A+ F +M P+ C
Sbjct: 233 AQFEQMAERDIVTWNSMISGF-NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN 291
Query: 238 -EK---------------------TWNSIISVLIRNGLVKEAHSYLEKYPYSN--IASWT 273
EK N++IS+ R G V+ A +E+ + I +T
Sbjct: 292 LEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFT 351
Query: 274 NVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333
++ GY ++G++ A +F + RDV W MI G ++ E + F M G P
Sbjct: 352 ALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRP 411
Query: 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEF 393
++ T ++L++ S L +L G+QIH A+K +VSNA+ITMYA+ GNI SA F
Sbjct: 412 NSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF 471
Query: 394 SSVPIH-DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452
+ D +SW S+I LA HG+AE+ALELFE M + +PD IT+VGV SAC++AGLV
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531
Query: 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA 512
+QGR YFD MK+ + P +HY C+VDL GR GL+ EA + ++ IE WG+
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM---PIEPDVVTWGS 588
Query: 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572
LL ACR+H NI +G++A ER++ LEP NSG Y L +Y +CG+ E+A +I MK+ V
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648
Query: 573 KKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIER 616
KKE G SWI++ HVF D +HP+ + + + + EI++
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKK 692
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 213/637 (33%), Positives = 325/637 (51%), Gaps = 91/637 (14%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
+R+ I EA+++F+K+ R+TVTWN MI GY K ++ A LF+ MP+RD+ T+NT+I+
Sbjct: 51 IRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMIS 110
Query: 61 GLMQSDNV---QGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSW 117
G + + + A+++FD M RD +WN+MISGY N I EAL +F MP ++ VSW
Sbjct: 111 GYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSW 170
Query: 118 NLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEA------------- 164
+ +I +D A F++M +D + +V GL++ R+ EA
Sbjct: 171 SAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSG 230
Query: 165 ------------------------RKLFDKMP---------------AKDVQAWNLMIAG 185
R LFD++P K+V +WN MI
Sbjct: 231 REDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKA 290
Query: 186 YLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSII 245
YL G V A LF +M DRD SW +I+G V+ R++ A + F +MP
Sbjct: 291 YLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPN---------- 340
Query: 246 SVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNV 305
++AHS W ++ GY +G V A FE + WN
Sbjct: 341 ---------RDAHS------------WNMMVSGYASVGNVELARHYFEKTPEKHTVSWNS 379
Query: 306 MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA 365
+I +N +E + F++M G PD T TS+L+ + L L LG Q+H +K
Sbjct: 380 IIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTV 439
Query: 366 RNQFTTVSNAMITMYARCGNIQSALLEFSSVPI-HDIISWNSIICGLAYHGYAEKALELF 424
V NA+ITMY+RCG I + F + + ++I+WN++I G A+HG A +AL LF
Sbjct: 440 IPD-VPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLF 498
Query: 425 ERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR 484
M+ P ITFV VL+AC++AGLVD+ + F M + Y ++P+ HY+ +V++
Sbjct: 499 GSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSG 558
Query: 485 FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544
G +EAM ++ + E TVWGALL ACRI+NN+ + +A E + LEP +S Y
Sbjct: 559 QGQFEEAMYIITSM---PFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPY 615
Query: 545 LILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581
++L MY G ++A ++ M+ +KKE G SW+
Sbjct: 616 VLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWV 652
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 197/567 (34%), Positives = 304/567 (53%), Gaps = 26/567 (4%)
Query: 57 TVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVS 116
+I + S + A+EVF+ + V + MI+GY + + +AL +F MP++DVVS
Sbjct: 40 VLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVS 99
Query: 117 WNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDV 176
WN +I V C M+ A F EM R V SWT MVNG R G++ +A +LF +MP KD
Sbjct: 100 WNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDT 159
Query: 177 QAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPET 236
AWN M+ GYL G V A LF++M +++ SW +I GL + R A+ FK M
Sbjct: 160 AAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRC 219
Query: 237 CEKTWNSIISVLIR--------------NGLVKEAHSYLEKYPYSNIASWTNVIVGYFEM 282
C K+ + + +I +GL+ + E+Y +++ I Y
Sbjct: 220 CIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASL------ITFYANC 273
Query: 283 GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342
+G + KVF+ V VW ++ G N E+ L F M + P+ +TF S L
Sbjct: 274 KRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGL 333
Query: 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDII 402
CS L TLD G+++H A+K+ V N+++ MY+ GN+ A+ F + I+
Sbjct: 334 NSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIV 393
Query: 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462
SWNSII G A HG + A +F +M + +PD+ITF G+LSACS+ G +++GR F M
Sbjct: 394 SWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYM 453
Query: 463 KNKY-FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN 521
+ + + HYTC+VD+LGR G + EA L+ + ++ + VW ALL ACR+H+
Sbjct: 454 SSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMV---VKPNEMVWLALLSACRMHS 510
Query: 522 NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581
++ GE A + L+ +S Y++L+ +Y S GR + ++ +MK+NG+ K+PG SW+
Sbjct: 511 DVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWV 570
Query: 582 QINDGGHVFLSGDSSHPK--FHRLRYL 606
I H F SGD H + +L +L
Sbjct: 571 VIRGKKHEFFSGDQPHCSRIYEKLEFL 597
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 624 | ||||||
| 359477774 | 691 | PREDICTED: pentatricopeptide repeat-cont | 0.908 | 0.820 | 0.655 | 0.0 | |
| 147859671 | 833 | hypothetical protein VITISV_026574 [Viti | 0.972 | 0.728 | 0.646 | 0.0 | |
| 449433223 | 675 | PREDICTED: pentatricopeptide repeat-cont | 0.915 | 0.845 | 0.605 | 0.0 | |
| 359491499 | 766 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.801 | 0.397 | 1e-143 | |
| 357521591 | 980 | Pentatricopeptide repeat-containing prot | 0.983 | 0.626 | 0.401 | 1e-143 | |
| 92870988 | 766 | Tetratricopeptide-like helical [Medicago | 0.983 | 0.801 | 0.401 | 1e-143 | |
| 449497589 | 776 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.789 | 0.377 | 1e-141 | |
| 449439555 | 776 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.789 | 0.376 | 1e-141 | |
| 356511263 | 763 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.804 | 0.393 | 1e-139 | |
| 297809863 | 776 | pentatricopeptide repeat-containing prot | 0.955 | 0.768 | 0.390 | 1e-138 |
| >gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/619 (65%), Positives = 500/619 (80%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MRN +EAQ LFD+MPQR+TVT+N MIRGYF+NG + LF++MPERD+F+YNT+IA
Sbjct: 52 MRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIFSYNTMIA 111
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
GLM+ ++ GA E+F M RDVV+WNSMISGYV NGLI EALRVF GM LKDVVSWNLV
Sbjct: 112 GLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLV 171
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
I LV ++DLAE +FKEMG RD+ASWT M++GL GRIVEAR LF+ MP +DV+AWN
Sbjct: 172 IAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWN 231
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
MIAGY++NGC+ + E LFQKM RD SW ++INGLV ++RI A+ F +MP+ C ++
Sbjct: 232 TMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDAMRLFVEMPQKCRRS 291
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WNSI+ LIRNGL+KEAH++LEK P+S+ SWTN+IVGYFE GEV +A+ +FELM RD
Sbjct: 292 WNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIFELMPARDA 351
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
T WNV+I+GLGEND GEEGLKFFV+MKE GP PD ATFTSVLTICSDLPTL LGRQIHAQ
Sbjct: 352 TAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQ 411
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
K N F VSNAM+T+YARCGN SALL FS++ HD ISWNSIICGLA++G +A
Sbjct: 412 VTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSAMRSHDFISWNSIICGLAHNGNGVEA 471
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
+E+FE+MR D KP+ ITFVGVLSACS+AGLVDQG+YYFD MK K L+P HYTC+VD
Sbjct: 472 IEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCIVD 531
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGRFGLIDEAM+ L ++ A+G+EV +VWGA+LGACRIH N++VGEIAGER++E+EP+N
Sbjct: 532 LLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNMQVGEIAGERILEIEPHN 591
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
SGVY+IL EMYLS G+REDA+R++ +M+E GVKK+P CSW+++N GHVFLSGDSSHP+F
Sbjct: 592 SGVYIILAEMYLSSGKREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLSGDSSHPQF 651
Query: 601 HRLRYLLNLLHTEIEREIL 619
R+ +L LLH E+E IL
Sbjct: 652 SRVCGVLGLLHMEMEIGIL 670
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147859671|emb|CAN83112.1| hypothetical protein VITISV_026574 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/619 (64%), Positives = 491/619 (79%), Gaps = 12/619 (1%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MRN +EAQ LFD+MPQR+TVT+N MIRGYF+NG + LF++MPERD+F+YNT+IA
Sbjct: 206 MRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIFSYNTMIA 265
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
GLM+ ++ GA E+F M RDVV+WNSMISGYV NGLI EALRVF GM LKDVVSWNLV
Sbjct: 266 GLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLKDVVSWNLV 325
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
I LV ++DLAE +FKEMG RD+ASWT M++GL GRIVEAR LF+ MP +DV+AWN
Sbjct: 326 IAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMPVRDVRAWN 385
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
MIAGYL+NGC+ + E LFQKM RD SW ++INGLV ++RI A+ F +MP+ C ++
Sbjct: 386 TMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNAMRLFVEMPQKCRRS 445
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WNSI+ LIRNGL+KEAH++LEK P+S+ SWTN+IVGYFE GEV +A+ +FELM RD
Sbjct: 446 WNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIFELMPARDA 505
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
T WNV+I+GLGEND GEEGLKFFV+MKE GP PD ATFTSVLTICSDLPTL LGRQIHAQ
Sbjct: 506 TAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQ 565
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
K N F VSNAM+T+YARCGN SALL FSS+ HD+ISWNSIICGLA++G +A
Sbjct: 566 VTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSSMTSHDVISWNSIICGLAHNGNGVEA 625
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
+E+FE+MR TD KP+ ITFVGVLSACS+AGLVDQG+YYFD MK K L+P HYTC+VD
Sbjct: 626 IEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCIVD 685
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGRFGLIDEAM+ L ++ A+G+EV +VWGA+LGACRIH NI+VGEIAGER++E+EP+N
Sbjct: 686 LLGRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNIQVGEIAGERILEIEPHN 745
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
CG+REDA+R++ +M+E GVKK+P CSW+++N GHVFLSGDSSHP+F
Sbjct: 746 ------------FCGKREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLSGDSSHPQF 793
Query: 601 HRLRYLLNLLHTEIEREIL 619
R+ +L LLH E+E IL
Sbjct: 794 SRVCGVLGLLHMEMEIGIL 812
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433223|ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] gi|449487596|ref|XP_004157705.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/614 (60%), Positives = 477/614 (77%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MRN +++AQ LFD MPQR+ VTWN MIRGYF NG + + LF +MPERD+F+YNTVI
Sbjct: 57 MRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPERDVFSYNTVIG 116
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
GLMQ +V GAK++FD M RDVV+WNSMI+G + NGL++EA+++F GMPLK+V+SWNL+
Sbjct: 117 GLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMPLKNVISWNLI 176
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
IG LVNC ++D A YF +M RD+ SWTIM++GL R GR+ EAR LF+ MP KD + WN
Sbjct: 177 IGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNMPTKDARVWN 236
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
M+ GY++NG + +AE+LF M +R+ SW +L+NG V S+R+D A F +MP+ C+KT
Sbjct: 237 AMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLFMEMPDKCQKT 296
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN+I+ IRNGLV + H+ LEK PY NIASWTN+IVGYF +GEVG A+++FE M +D
Sbjct: 297 WNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVGMAVEIFESMQYKDT 356
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
TVWN IFGLGEND GEEGLK F +M GP D ATFTS+LTICSDL TL LGRQ HA
Sbjct: 357 TVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTICSDLETLQLGRQTHAL 416
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K N F VSNAMI MYARCGN+ A +EFSS+ D+ISWNS+ICG A+HG E A
Sbjct: 417 ILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVISWNSMICGFAHHGNGEDA 476
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
LE+FE+MRL + +P+ ITF+GVLSACS+ GL+D+GRYYF+ MKN+ L+P HYTC+VD
Sbjct: 477 LEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFMKNECSLRPLIEHYTCLVD 536
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
L GRFGLIDEA++ L E++A+ IEV P+VWGALLGACRIH N VG IAGE+V+E EP+N
Sbjct: 537 LFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGACRIHKNYDVGVIAGEKVLEKEPHN 596
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
+GVYLIL EMYL G+RE+A++IFA+MK NGVKK+PGCSWI++N+ G+VFLSGD S+P F
Sbjct: 597 AGVYLILAEMYLRNGKRENAEKIFARMKNNGVKKQPGCSWIEVNNCGYVFLSGDCSNPHF 656
Query: 601 HRLRYLLNLLHTEI 614
R+ ++ L++ EI
Sbjct: 657 DRICSVVKLVNLEI 670
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/617 (39%), Positives = 376/617 (60%), Gaps = 3/617 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MRN + A LF+ MP+R +++WN MI G N A LF +MP RD+ ++N +I+
Sbjct: 60 MRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMIS 119
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G ++ N++ A+ +FD M RDVV+WN+M+SGY NG + EA +F MP K+ +SWN +
Sbjct: 120 GCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGM 179
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V R++ A F+ ++ SW M+ G V+ R+V+AR +FD+MP +D +WN
Sbjct: 180 LAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWN 239
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
MI+GY NG + A+ LF++ RD+ +W +++G V + +D A F MPE +
Sbjct: 240 TMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS 299
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN+II+ ++ + +A E P N++SW +I GY + G++ A F+ M RD
Sbjct: 300 WNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDS 359
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W +I G ++ GEE L FV+MK G + +TFTS L+ C+++ L+LG+Q+H +
Sbjct: 360 ISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGR 419
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K V NA++ MY +CGNI A + F + +++SWN++I G A HG+ ++A
Sbjct: 420 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEA 479
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L LFE M+ T PDD+T VGVLSACS+ GLVD+G YF M Y + S HYTC++D
Sbjct: 480 LMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMID 539
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR G +D+A NL+ + E WGALLGA RIH N ++GE A + + E+EP+N
Sbjct: 540 LLGRAGRLDDAQNLMKNM---PFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDN 596
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
SG+Y++L+ +Y + GR D R+ +M++ GVKK PG SW+++ + H F GDS HP+
Sbjct: 597 SGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPER 656
Query: 601 HRLRYLLNLLHTEIERE 617
R+ L L ++++E
Sbjct: 657 DRIYTFLEELDLKMKKE 673
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/617 (40%), Positives = 384/617 (62%), Gaps = 3/617 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MRN A ++F+ MP+R +V++N MI GY +N + A LF+QMPERD+F++N ++
Sbjct: 60 MRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLT 119
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ + A+ +FD M +DVV+WNS++SGY NG +DEA VF MP K+ +SWN +
Sbjct: 120 GYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V+ R++ A F+ D+ SW ++ G VR+ ++ +AR LFDKMP +D +WN
Sbjct: 180 LAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWN 239
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
MI+GY G + A LF + RD+ +W +++G V + +D A ++F +MPE E +
Sbjct: 240 TMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS 299
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
+N++I+ ++ + A E P NI+SW +I GY ++G++ A K F++M RD
Sbjct: 300 YNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC 359
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W +I G ++ EE L FV++K+ G S + ATF L+ C+D+ L+LG+QIH Q
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
A+K+ V NA++ MY +CG+I A F + D++SWN+++ G A HG+ +A
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L +FE M+ KPD+IT VGVLSACS+ GL+D+G YF M Y + P S HYTC++D
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR G ++EA +L IR + WGALLGA RIH N ++GE A E V ++EP N
Sbjct: 540 LLGRAGRLEEAQDL---IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQN 596
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
SG+Y++L+ +Y + GR DA ++ ++M++ GV+K PG SW+++ + H F GD SHP+
Sbjct: 597 SGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEK 656
Query: 601 HRLRYLLNLLHTEIERE 617
R+ L L ++ E
Sbjct: 657 ERIYAYLEELDLKMREE 673
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 248/617 (40%), Positives = 384/617 (62%), Gaps = 3/617 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MRN A ++F+ MP+R +V++N MI GY +N + A LF+QMPERD+F++N ++
Sbjct: 60 MRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLT 119
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ + A+ +FD M +DVV+WNS++SGY NG +DEA VF MP K+ +SWN +
Sbjct: 120 GYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V+ R++ A F+ D+ SW ++ G VR+ ++ +AR LFDKMP +D +WN
Sbjct: 180 LAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWN 239
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
MI+GY G + A LF + RD+ +W +++G V + +D A ++F +MPE E +
Sbjct: 240 TMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS 299
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
+N++I+ ++ + A E P NI+SW +I GY ++G++ A K F++M RD
Sbjct: 300 YNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC 359
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W +I G ++ EE L FV++K+ G S + ATF L+ C+D+ L+LG+QIH Q
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
A+K+ V NA++ MY +CG+I A F + D++SWN+++ G A HG+ +A
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L +FE M+ KPD+IT VGVLSACS+ GL+D+G YF M Y + P S HYTC++D
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR G ++EA +L IR + WGALLGA RIH N ++GE A E V ++EP N
Sbjct: 540 LLGRAGRLEEAQDL---IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQN 596
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
SG+Y++L+ +Y + GR DA ++ ++M++ GV+K PG SW+++ + H F GD SHP+
Sbjct: 597 SGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEK 656
Query: 601 HRLRYLLNLLHTEIERE 617
R+ L L ++ E
Sbjct: 657 ERIYAYLEELDLKMREE 673
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 233/617 (37%), Positives = 385/617 (62%), Gaps = 4/617 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MR + + A ++F+ M +R TVT+N MI GY N D A +F +MP+RD+ ++N +++
Sbjct: 71 MRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLS 130
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ N+ A+ +F+ M +DVV+WN+M+SG+ NG ++EA ++F M +K+ +SWN +
Sbjct: 131 GYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGL 190
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V R++ A F ++ SW ++ G VR+ R+ +AR LFD+MP +D +WN
Sbjct: 191 LSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
+MI GY NG + A LF+++ RD+ +W +++G V + +D A F++MPE E +
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN++I+ +++ +++A ++ P N +SW ++ GY + G + A +F+ M RD
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W MI G ++ EE L F++MK G + + L+ C+++ L+LG+Q+H +
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K NA++ MY +CG+I+ A F + DI+SWN++I G A HG+ ++A
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L LFE M++T KPDD+T VGVLSACS+ GLVD+G YF+ M Y + + HYTC++D
Sbjct: 491 LALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMID 549
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR G +DEA+NL+ + WGALLGA RIH + ++GE A E+V E+EP+N
Sbjct: 550 LLGRAGRLDEALNLMKSM---PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
SG+Y++L+ +Y + GR + + + ++M++ GVKK PG SW++I + H+F GD SHP+
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEA 666
Query: 601 HRLRYLLNLLHTEIERE 617
R+ L L E++++
Sbjct: 667 ERIYAYLEELDLELKKD 683
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/617 (37%), Positives = 384/617 (62%), Gaps = 4/617 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MR + + A ++F+ M +R TVT+N MI GY N D A +F +MP+RD+ ++N +++
Sbjct: 71 MRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLS 130
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ N+ A+ +F+ M +DVV+WN+M+SG+ NG ++EA ++F M +K+ +SWN +
Sbjct: 131 GYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGL 190
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V R++ A F ++ SW ++ G VR+ R+ +AR LFD+MP +D +WN
Sbjct: 191 LSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWN 250
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
+MI GY NG + A LF+++ RD+ +W +++G V + +D A F++MPE E +
Sbjct: 251 IMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS 310
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN++I+ +++ +++A ++ P N +SW ++ GY + G + A +F+ M RD
Sbjct: 311 WNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDC 370
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W MI G ++ EE L F++MK G + + L+ C+++ L+LG+Q+H +
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K NA++ MY +CG+I+ A F + DI+SWN++I G A HG+ ++A
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L LFE M++T KPDD+T VGVLSACS+ G VD+G YF+ M Y + + HYTC++D
Sbjct: 491 LALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMID 549
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR G +DEA+NL+ + WGALLGA RIH + ++GE A E+V E+EP+N
Sbjct: 550 LLGRAGRLDEALNLMKSM---PFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDN 606
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
SG+Y++L+ +Y + GR + + + ++M++ GVKK PG SW++I + H+F GD SHP+
Sbjct: 607 SGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEA 666
Query: 601 HRLRYLLNLLHTEIERE 617
R+ L L E++++
Sbjct: 667 ERIYAYLEELDLELKKD 683
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/617 (39%), Positives = 378/617 (61%), Gaps = 3/617 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MRN A +F+ MP+R +V++N MI GY +N A LF++MPERD+F++N ++
Sbjct: 57 MRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLT 116
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ + A ++FD M +DVV+WN+M+SGY NG +DEA VF+ MP ++ +SWN +
Sbjct: 117 GYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGL 176
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V+ R+ A F+ ++ SW ++ G V+ + +AR+LFD+MP +DV +WN
Sbjct: 177 LAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWN 236
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
MI+GY G + A+ LF + RD+ +W +++G V + +D A YF +MP E +
Sbjct: 237 TMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEIS 296
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
+N++++ ++ + A E P NI+SW +I GY + G + A K+F++M RD
Sbjct: 297 YNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDC 356
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W +I G +N EE L FV+MK G S + +TF+ L+ C+D+ L+LG+Q+H Q
Sbjct: 357 VSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQ 416
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K V NA++ MY +CG+ A F + D++SWN++I G A HG+ +A
Sbjct: 417 VVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQA 476
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L LFE M+ KPD+IT VGVLSACS++GL+D+G YF M Y ++P S HYTC++D
Sbjct: 477 LVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMID 536
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR G ++EA NL+ + D S WGALLGA RIH N ++GE A E V ++EP N
Sbjct: 537 LLGRAGRLEEAENLMRNMPFDPGAAS---WGALLGASRIHGNTELGEKAAEMVFKMEPQN 593
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKF 600
SG+Y++L+ +Y + GR D ++ ++M+E GV+K G SW+++ + H F GD HP+
Sbjct: 594 SGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEK 653
Query: 601 HRLRYLLNLLHTEIERE 617
R+ L L ++ RE
Sbjct: 654 DRIYAFLEELDLKMRRE 670
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/599 (39%), Positives = 366/599 (61%), Gaps = 3/599 (0%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MR R EA +F +MP+ +V++N MI GY +NG + A LF++MPERD+ ++N +I
Sbjct: 70 MRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIK 129
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ N+ A+E+F+ M RDV +WN+++SGY NG +D+A RVF MP K+ VSWN +
Sbjct: 130 GYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNAL 189
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V +++ A F + SW ++ G V++ +IVEAR+ FD M +DV +WN
Sbjct: 190 LSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWN 249
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
+I GY NG + A LF + D+ +W +++G + +R ++ A F +MPE E +
Sbjct: 250 TIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS 309
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN++++ ++ V+ A + P N+++W +I GY + G++ A +F+ M RD
Sbjct: 310 WNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 369
Query: 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W MI G ++ E L+ FV M+ G + ++F+S L+ C+D+ L+LG+Q+H +
Sbjct: 370 VSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 429
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K V NA++ MY +CG+I+ A F + DI+SWN++I G + HG+ E+A
Sbjct: 430 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEA 489
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L FE M+ KPDD T V VLSACS+ GLVD+GR YF M Y ++P S HY C+VD
Sbjct: 490 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVD 549
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR GL++EA NL+ + E +WG LLGA R+H N ++ E A +++ +EP N
Sbjct: 550 LLGRAGLLEEAHNLMKNM---PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 606
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPK 599
SG+Y++L+ +Y S GR D ++ +M++ GVKK PG SWI+I + H F GD HP+
Sbjct: 607 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 665
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 624 | ||||||
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.955 | 0.763 | 0.385 | 5.5e-125 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.937 | 0.829 | 0.355 | 9.2e-107 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.900 | 0.798 | 0.358 | 5.8e-105 | |
| TAIR|locus:2044797 | 627 | AT2G35030 [Arabidopsis thalian | 0.891 | 0.886 | 0.337 | 1.3e-98 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.934 | 0.836 | 0.338 | 5e-92 | |
| TAIR|locus:2151501 | 697 | AT5G46460 [Arabidopsis thalian | 0.871 | 0.780 | 0.350 | 1.8e-87 | |
| TAIR|locus:505006163 | 761 | AT1G32415 "AT1G32415" [Arabido | 0.940 | 0.771 | 0.339 | 1.3e-86 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.919 | 0.730 | 0.337 | 2.7e-84 | |
| TAIR|locus:2018092 | 656 | MEF9 "AT1G62260" [Arabidopsis | 0.899 | 0.855 | 0.326 | 7.2e-84 | |
| TAIR|locus:2131631 | 804 | AT4G35130 "AT4G35130" [Arabido | 0.862 | 0.669 | 0.295 | 4e-81 |
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1228 (437.3 bits), Expect = 5.5e-125, P = 5.5e-125
Identities = 231/599 (38%), Positives = 361/599 (60%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIA 60
MR R EA +F +MP+ +V++N MI GY +NG + A LF++MPERD+ ++N +I
Sbjct: 75 MRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIK 134
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
G +++ N+ A+E+F+ M RDV +WN+M+SGY NG +D+A VF MP K+ VSWN +
Sbjct: 135 GYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194
Query: 121 IGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWN 180
+ A V +M+ A FK + SW ++ G V++ +IVEAR+ FD M +DV +WN
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN 254
Query: 181 LMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKT 240
+I GY +G + A LF + +D+ +W +++G + +R ++ A F +MPE E +
Sbjct: 255 TIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS 314
Query: 241 WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV 300
WN++++ ++ ++ A + P N+++W +I GY + G++ A +F+ M RD
Sbjct: 315 WNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDP 374
Query: 301 TVWNVMIFXXXXXXXXXXXXKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQ 360
W MI + FVQM+ G + ++F+S L+ C+D+ L+LG+Q+H +
Sbjct: 375 VSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 434
Query: 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420
+K V NA++ MY +CG+I+ A F + DI+SWN++I G + HG+ E A
Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVA 494
Query: 421 LELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480
L FE M+ KPDD T V VLSACS+ GLVD+GR YF M Y + P S HY C+VD
Sbjct: 495 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVD 554
Query: 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540
LLGR GL+++A NL+ + E +WG LLGA R+H N ++ E A +++ +EP N
Sbjct: 555 LLGRAGLLEDAHNLMKNMP---FEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611
Query: 541 SGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPK 599
SG+Y++L+ +Y S GR D ++ +M++ GVKK PG SWI+I + H F GD HP+
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
Identities = 210/590 (35%), Positives = 347/590 (58%)
Query: 23 TWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRD 82
T NV I + G + A LF+ + + ++N+++AG + + A+++FD M R+
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78
Query: 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA 142
+++WN ++SGY+ NG IDEA +VF MP ++VVSW ++ V+ ++D+AES F +M
Sbjct: 79 IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE 138
Query: 143 RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKM 202
++ SWT+M+ G +++GRI +A KL++ +P KD A MI G G V A ++F +M
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 198
Query: 203 HDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLE 262
+R + +W ++ G + R+D A F MPE E +W S++ ++NG +++A E
Sbjct: 199 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFE 258
Query: 263 KYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFXXXXXXXXXXXXKF 322
P + + +I G + GE+ A +VF+ M R+ W +I
Sbjct: 259 VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDL 318
Query: 323 FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382
F+ M++ G P T S+L++C+ L +L G+Q+HAQ ++ + V++ ++TMY +
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378
Query: 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT-DFKPDDITFVG 441
CG + + L F P DII WNSII G A HG E+AL++F M L+ KP+++TFV
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438
Query: 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501
LSACSYAG+V++G ++ M++ + ++P +AHY C+VD+LGR G +EAM +++ +
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT-- 496
Query: 502 GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAK 561
+E VWG+LLGACR H+ + V E ++++E+EP NSG Y++L+ MY S GR D
Sbjct: 497 -VEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVA 555
Query: 562 RIFAQMKENGVKKEPGCSWIQINDGGHVFLSGD-SSHPKFHRLRYLLNLL 610
+ MK V+K PGCSW ++ + H F G +SHP+ + +L+ L
Sbjct: 556 ELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDEL 605
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 203/566 (35%), Positives = 328/566 (57%)
Query: 35 GFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYV 94
G ++ A F+ + + + ++N++++G + + A+++FD M R+VV+WN ++SGY+
Sbjct: 31 GKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYI 90
Query: 95 CNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNG 154
N +I EA VF MP ++VVSW ++ + + AES F M R+ SWT+M G
Sbjct: 91 KNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGG 150
Query: 155 LVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLI 214
L+ +GRI +ARKL+D MP KDV A MI G G V A +F +M +R++ +W +I
Sbjct: 151 LIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMI 210
Query: 215 NGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTN 274
G + R+D A F+ MPE E +W S++ +G +++A + E P + +
Sbjct: 211 TGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNA 270
Query: 275 VIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFXXXXXXXXXXXXKFFVQMKESGPSPD 334
+IVG+ E+GE+ A +VF+LM RD W MI F QM++ G P
Sbjct: 271 MIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPS 330
Query: 335 NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFS 394
+ S+L++C+ L +L GRQ+HA ++ + V++ ++TMY +CG + A L F
Sbjct: 331 FPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFD 390
Query: 395 SVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQ 454
DII WNSII G A HG E+AL++F M + P+ +T + +L+ACSYAG +++
Sbjct: 391 RFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEE 450
Query: 455 GRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL 514
G F+ M++K+ + P HY+C VD+LGR G +D+AM L+ + I+ TVWGALL
Sbjct: 451 GLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMT---IKPDATVWGALL 507
Query: 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKK 574
GAC+ H+ + + E+A +++ E EP+N+G Y++L+ + S + D + M+ N V K
Sbjct: 508 GACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSK 567
Query: 575 EPGCSWIQINDGGHVFLSGD-SSHPK 599
PGCSWI++ H+F G +HP+
Sbjct: 568 FPGCSWIEVGKKVHMFTRGGIKNHPE 593
|
|
| TAIR|locus:2044797 AT2G35030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 190/563 (33%), Positives = 328/563 (58%)
Query: 58 VIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL-KDVVS 116
+I L + + A+++FDG+ RDVVTW +I+GY+ G + EA +F + K+VV+
Sbjct: 52 LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111
Query: 117 WNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDV 176
W ++ + +++ +AE F+EM R+V SW M++G + GRI +A +LFD+MP +++
Sbjct: 112 WTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI 171
Query: 177 QAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPET 236
+WN M+ + G + A +LF++M RD+ SW +++GL + ++D A F MPE
Sbjct: 172 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 231
Query: 237 CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMT 296
+WN++I+ +N + EA + P + ASW +I G+ E+ A +F+ M
Sbjct: 232 NIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMP 291
Query: 297 TRDVTVWNVMIFXXXXXXXXXXXXKFFVQMKESGP-SPDNATFTSVLTICSDLPTLDLGR 355
++V W MI F +M G P+ T+ S+L+ CSDL L G+
Sbjct: 292 EKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQ 351
Query: 356 QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSS--VPIHDIISWNSIICGLAY 413
QIH K + V++A++ MY++ G + +A F + V D+ISWNS+I A+
Sbjct: 352 QIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAH 411
Query: 414 HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA 473
HG+ ++A+E++ +MR FKP +T++ +L ACS+AGLV++G +F + L R
Sbjct: 412 HGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREE 471
Query: 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERV 533
HYTC+VDL GR G + + N +N D +S + +GA+L AC +HN + + + ++V
Sbjct: 472 HYTCLVDLCGRAGRLKDVTNFIN---CDDARLSRSFYGAILSACNVHNEVSIAKEVVKKV 528
Query: 534 MELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSG 593
+E +++G Y++++ +Y + G+RE+A + +MKE G+KK+PGCSW+++ H+F+ G
Sbjct: 529 LETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVG 588
Query: 594 DSSHPKFHRLRYLLNLLHTEIER 616
D SHP+F L +L+ L ++ +
Sbjct: 589 DKSHPQFEALDSILSDLRNKMRK 611
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 213/630 (33%), Positives = 333/630 (52%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS 65
+++ + +FDKMPQR+ TWN ++ G K GFLD A LF MPERD T+N++++G Q
Sbjct: 71 LEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 66 DNVQGAKEVFDGMEVRDVV----TWNSMISGYVCNGLID--EALRVFHGMPLKDVVSWNL 119
D + A F M V ++ S++S C+GL D + ++V H + K ++
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSA--CSGLNDMNKGVQV-HSLIAKSPFLSDV 187
Query: 120 VIG-ALVN----CQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK 174
IG ALV+ C ++ A+ F EMG R+V SW ++ + G VEA +F M
Sbjct: 188 YIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLES 247
Query: 175 DVQAWNLMIAGYLDNGCVGV-AEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQM 233
V+ + +A + + C + A + Q++H R + + K L N ++ S F M
Sbjct: 248 RVEPDEVTLASVI-SACASLSAIKVGQEVHGRVVKNDK-LRNDIILSNA-------FVDM 298
Query: 234 PETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFE 293
C + +KEA + P N+ + T++I GY +A +F
Sbjct: 299 YAKCSR--------------IKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFT 344
Query: 294 LMTTRDVTVWNVMIFXXXXXXXXXXXXKFFVQMKESGPSPDNATFTSVLTICSDLPTLDL 353
M R+V WN +I F +K P + +F ++L C+DL L L
Sbjct: 345 KMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHL 404
Query: 354 GRQIHAQAIK------IARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSI 407
G Q H +K V N++I MY +CG ++ L F + D +SWN++
Sbjct: 405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAM 464
Query: 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF 467
I G A +GY +ALELF M + KPD IT +GVLSAC +AG V++GR+YF M +
Sbjct: 465 IIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFG 524
Query: 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE 527
+ P HYTC+VDLLGR G ++EA +++ E+ ++ +WG+LL AC++H NI +G+
Sbjct: 525 VAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMP---MQPDSVIWGSLLAACKVHRNITLGK 581
Query: 528 IAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGG 587
E+++E+EP+NSG Y++L+ MY G+ ED + M++ GV K+PGCSWI+I
Sbjct: 582 YVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHD 641
Query: 588 HVFLSGDSSHPKFHRLRYLLNLLHTEIERE 617
HVF+ D SHP+ ++ LL++L E+ E
Sbjct: 642 HVFMVKDKSHPRKKQIHSLLDILIAEMRPE 671
|
|
| TAIR|locus:2151501 AT5G46460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 197/562 (35%), Positives = 300/562 (53%)
Query: 58 VIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYV-CNGLIDEALRVFHGMPLKDVVS 116
+I + S + A+EVF+ + V + MI+GY N L+D AL +F MP++DVVS
Sbjct: 41 LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVD-ALNLFDEMPVRDVVS 99
Query: 117 WNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDV 176
WN +I V C M+ A F EM R V SWT MVNG R G++ +A +LF +MP KD
Sbjct: 100 WNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDT 159
Query: 177 QAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPET 236
AWN M+ GYL G V A LF++M +++ SW +I GL + R A+ FK M
Sbjct: 160 AAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRC 219
Query: 237 CEKTWNSIISVLIR---NG----LVKEAHSYLEK--YPYSNIASWTNVIVGYFEMGEVGS 287
C K+ + + +I N + + H + K + Y S ++I Y +G
Sbjct: 220 CIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVS-ASLITFYANCKRIGD 278
Query: 288 AIKVFELMTTRDVTVWNVMIFXXXXXXXXXXXXKFFVQMKESGPSPDNATFTSVLTICSD 347
+ KVF+ V VW ++ F M + P+ +TF S L CS
Sbjct: 279 SRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSA 338
Query: 348 LPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSI 407
L TLD G+++H A+K+ V N+++ MY+ GN+ A+ F + I+SWNSI
Sbjct: 339 LGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSI 398
Query: 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY- 466
I G A HG + A +F +M + +PD+ITF G+LSACS+ G +++GR F M +
Sbjct: 399 IVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGIN 458
Query: 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526
+ + HYTC+VD+LGR G + EA L+ + ++ + VW ALL ACR+H+++ G
Sbjct: 459 HIDRKIQHYTCMVDILGRCGKLKEAEELIERMV---VKPNEMVWLALLSACRMHSDVDRG 515
Query: 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDG 586
E A + L+ +S Y++L+ +Y S GR + ++ +MK+NG+ K+PG SW+ I
Sbjct: 516 EKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGK 575
Query: 587 GHVFLSGDSSHPK--FHRLRYL 606
H F SGD H + +L +L
Sbjct: 576 KHEFFSGDQPHCSRIYEKLEFL 597
|
|
| TAIR|locus:505006163 AT1G32415 "AT1G32415" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 208/613 (33%), Positives = 338/613 (55%)
Query: 5 RIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQ 64
R+ EA LF +MP ++ V+W VM+ +G ++A+ LF++MPER++ ++NT++ GL++
Sbjct: 123 RMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIR 181
Query: 65 SDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGAL 124
+ +++ AK+VFD M RDVV+WN+MI GY+ N ++EA +F M K+VV+W ++
Sbjct: 182 NGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGY 241
Query: 125 VNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK-DVQAWN--- 180
+ A F EM R++ SWT M++G EA LF +M D + N
Sbjct: 242 CRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGET 301
Query: 181 LMIAGYLDNGCVGVA-EDLFQKMHDRDLTS-WK------QLINGLVNSRRIDAAISYFKQ 232
L+ Y G +GV L +++H + +++ W+ +L LV+ I+ +
Sbjct: 302 LISLAYACGG-LGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQS 360
Query: 233 M-PETCE-KTWNSIISVLIRNGLVKEAHSYLEKYP-YSNIASWTNVIVGYFEMGEVGSAI 289
+ E+ + ++ N II+ ++NG ++ A + E+ + SWT++I GY E G+V A
Sbjct: 361 LLNESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAF 420
Query: 290 KVFELMTTRDVTVWNVMIFXXXXXXXXXXXXKFFVQMKESGPSPDNATFTSVLTICSDLP 349
+F+ + +D W VMI M G P N+T++ +L+
Sbjct: 421 GLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATS 480
Query: 350 TLDLGRQIHAQAIKIAR--NQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSI 407
LD G+ IH K + + N++++MYA+CG I+ A F+ + D +SWNS+
Sbjct: 481 NLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSM 540
Query: 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF 467
I GL++HG A+KAL LF+ M + KP+ +TF+GVLSACS++GL+ +G F MK Y
Sbjct: 541 IMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKETYS 600
Query: 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK--- 524
+QP HY ++DLLGR G + EA ++ + TV+GALLG C ++ K
Sbjct: 601 IQPGIDHYISMIDLLGRAGKLKEAEEFISALP---FTPDHTVYGALLGLCGLNWRDKDAE 657
Query: 525 -VGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQI 583
+ E A R++EL+P N+ ++ L +Y GR + K + +M GVKK PGCSW+ +
Sbjct: 658 GIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWVVV 717
Query: 584 NDGGHVFLSGDSS 596
N +VFLSGD S
Sbjct: 718 NGRANVFLSGDKS 730
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 209/620 (33%), Positives = 318/620 (51%)
Query: 13 FDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGLMQSDNV 68
FD++PQRD+V+W MI GY G A+ + M E FT V+A + + +
Sbjct: 103 FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCM 162
Query: 69 QGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQ 128
+ K+V +S I G + VS N ++ C
Sbjct: 163 ETGKKV------------HSFIVKLGLRGNVS--------------VS-NSLLNMYAKCG 195
Query: 129 RMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLD 188
+A+ F M RD++SW M+ ++ G++ A F++M +D+ WN MI+G+
Sbjct: 196 DPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQ 255
Query: 189 NGCVGVAEDLFQKM-HDR----DLTSWKQLINGLVNSRRIDAAISYFKQMPET----CEK 239
G A D+F KM D D + +++ N ++ + T
Sbjct: 256 RGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGI 315
Query: 240 TWNSIISVLIRNGLVKEAHSYLEKYPYSN--IASWTNVIVGYFEMGEVGSAIKVFELMTT 297
N++IS+ R G V+ A +E+ + I +T ++ GY ++G++ A +F +
Sbjct: 316 VLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKD 375
Query: 298 RDVTVWNVMIFXXXXXXXXXXXXKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQI 357
RDV W MI F M G P++ T ++L++ S L +L G+QI
Sbjct: 376 RDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQI 435
Query: 358 HAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH-DIISWNSIICGLAYHGY 416
H A+K +VSNA+ITMYA+ GNI SA F + D +SW S+I LA HG+
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495
Query: 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYT 476
AE+ALELFE M + +PD IT+VGV SAC++AGLV+QGR YFD MK+ + P +HY
Sbjct: 496 AEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYA 555
Query: 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMEL 536
C+VDL GR GL+ EA + ++ IE WG+LL ACR+H NI +G++A ER++ L
Sbjct: 556 CMVDLFGRAGLLQEAQEFIEKMP---IEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLL 612
Query: 537 EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSS 596
EP NSG Y L +Y +CG+ E+A +I MK+ VKKE G SWI++ HVF D +
Sbjct: 613 EPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGT 672
Query: 597 HPKFHRLRYLLNLLHTEIER 616
HP+ + + + + EI++
Sbjct: 673 HPEKNEIYMTMKKIWDEIKK 692
|
|
| TAIR|locus:2018092 MEF9 "AT1G62260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 193/591 (32%), Positives = 317/591 (53%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNG---FLDNAMCLFNQMPERDMFTYNT 57
++ + +A+ LFD MP+RD VTWN MI GY G FL+ A LF++MP RD F++NT
Sbjct: 82 VKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNT 141
Query: 58 VIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSW 117
+I+G ++ + A +F+ M R+ V+W++MI+G+ NG +D A+ +F MP+KD
Sbjct: 142 MISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPL 201
Query: 118 NLVIGALVNCQRMDLAESYFKEMGA----RD--VASWTIMVNGLVREGRIVEARKLFDKM 171
++ L+ +R+ A + G+ R+ V ++ ++ G + G++ AR LFD++
Sbjct: 202 CALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQI 261
Query: 172 PAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFK 231
P D + G D+G E F++ +++ SW +I + + +A F
Sbjct: 262 P--D-------LCGD-DHG----GE--FRERFCKNVVSWNSMIKAYLKVGDVVSARLLFD 305
Query: 232 QMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKV 291
QM + +WN++I + +++A + + P + SW ++ GY +G V A
Sbjct: 306 QMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHY 365
Query: 292 FELMTTRDVTVWNVMIFXXXXXXXXXXXXKFFVQMKESGPSPDNATFTSVLTICSDLPTL 351
FE + WN +I F++M G PD T TS+L+ + L L
Sbjct: 366 FEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNL 425
Query: 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI-HDIISWNSIICG 410
LG Q+H +K V NA+ITMY+RCG I + F + + ++I+WN++I G
Sbjct: 426 RLGMQMHQIVVKTVIPD-VPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGG 484
Query: 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470
A+HG A +AL LF M+ P ITFV VL+AC++AGLVD+ + F M + Y ++P
Sbjct: 485 YAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEP 544
Query: 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530
+ HY+ +V++ G +EAM ++ + E TVWGALL ACRI+NN+ + +A
Sbjct: 545 QMEHYSSLVNVTSGQGQFEEAMYIITSMP---FEPDKTVWGALLDACRIYNNVGLAHVAA 601
Query: 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581
E + LEP +S Y++L MY G ++A ++ M+ +KKE G SW+
Sbjct: 602 EAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSWV 652
|
|
| TAIR|locus:2131631 AT4G35130 "AT4G35130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 164/555 (29%), Positives = 277/555 (49%)
Query: 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKE 139
V DV NS+IS Y+ G +A +VF MP +D+VSWN +I + + FKE
Sbjct: 162 VSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKE 221
Query: 140 M---GARDVASWTIMVNGLV------REGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNG 190
M G + T+ G + G+ + + ++ DV ++ Y G
Sbjct: 222 MLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYG 281
Query: 191 CVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISV-LI 249
V AE +F M R++ +W +I + R+ A F++M E + I S+ L+
Sbjct: 282 EVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLL 341
Query: 250 RNGLVKEA---HSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNV 305
+ E H Y + + ++ T +I Y E G++ SA +F+ M ++V WN
Sbjct: 342 PASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNS 401
Query: 306 MIFXXXXXXXXXXXXKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA 365
+I + F ++ +S PD+ T S+L ++ +L GR+IHA +K
Sbjct: 402 IIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSR 461
Query: 366 RNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFE 425
T + N+++ MYA CG+++ A F+ + + D++SWNSII A HG+ ++ LF
Sbjct: 462 YWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFS 521
Query: 426 RMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRF 485
M + P+ TF +L+ACS +G+VD+G YF+ MK +Y + P HY C++DL+GR
Sbjct: 522 EMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRT 581
Query: 486 GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545
G A L E+ + +WG+LL A R H +I + E A E++ ++E +N+G Y+
Sbjct: 582 GNFSAAKRFLEEMP---FVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYV 638
Query: 546 ILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRY 605
+L MY GR ED RI M+ G+ + S ++ HVF +GD SH +++
Sbjct: 639 LLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYE 698
Query: 606 LLNLLHTEIEREILF 620
+L+++ + E ++
Sbjct: 699 VLDVVSRMVGEEDIY 713
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 624 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-118 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-88 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-53 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-46 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (956), Expect = e-118
Identities = 205/654 (31%), Positives = 325/654 (49%), Gaps = 75/654 (11%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQM----PERDMFTY- 55
+R + A +F KMP+RD +WNV++ GY K G+ D A+CL+++M D++T+
Sbjct: 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP 191
Query: 56 ----------------------------------NTVIAGLMQSDNVQGAKEVFDGMEVR 81
N +I ++ +V A+ VFD M R
Sbjct: 192 CVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMG 141
D ++WN+MISGY NG E L +F M + V +L+ V L +
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERL---- 306
Query: 142 ARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQK 201
R++ + + + F A DV N +I YL G G AE +F +
Sbjct: 307 GREMHGYVV--------------KTGF----AVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 202 MHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETC----EKTWNSIISVLIRNGLVK-- 255
M +D SW +I+G + D A+ + M + E T S++S G +
Sbjct: 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408
Query: 256 -EAHSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313
+ H E+ S + +I Y + + A++VF + +DV W +I GL N
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468
Query: 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVS 373
+ E L FF QM + P++ T + L+ C+ + L G++IHA ++ +
Sbjct: 469 NRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527
Query: 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFK 433
NA++ +Y RCG + A +F+S D++SWN ++ G HG A+ELF RM +
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
Query: 434 PDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMN 493
PD++TF+ +L ACS +G+V QG YF M+ KY + P HY CVVDLLGR G + EA N
Sbjct: 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646
Query: 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS 553
+N++ I P VWGALL ACRIH ++++GE+A + + EL+PN+ G Y++L +Y
Sbjct: 647 FINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703
Query: 554 CGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLL 607
G+ ++ R+ M+ENG+ +PGCSW+++ H FL+ D SHP+ + +L
Sbjct: 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 7e-88
Identities = 161/531 (30%), Positives = 265/531 (49%), Gaps = 34/531 (6%)
Query: 121 IGALVNCQRMDLAESYFKEMGAR-----DVASWTIMVNGLVREGRIVEARKLFDKMPAK- 174
I LV C R A F+ + A +++ +V + I + ++ + +
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 175 ---DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFK 231
D N ++ ++ G + A LF +M +R+L SW +I GLV++ A + F+
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 232 QMPETCEKTWNSIISVLIRN----GLV---KEAHSYLEKY-PYSNIASWTNVIVGYFEMG 283
+M E V++R G ++ H + K + +I Y + G
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 284 EVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343
++ A VF+ M + WN M+ G + EE L + +M++SG S D TF+ ++
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 344 ICSDLPTLDLGRQIHAQAIKIARNQFTT--VSN-AMITMYARCGNIQSALLEFSSVPIHD 400
I S L L+ +Q HA I R F V+N A++ +Y++ G ++ A F +P +
Sbjct: 334 IFSRLALLEHAKQAHAGLI---RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
Query: 401 IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460
+ISWN++I G HG KA+E+FERM P+ +TF+ VLSAC Y+GL +QG F
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 461 CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520
M + ++PR+ HY C+++LLGR GL+DEA + IR + + +W ALL ACRIH
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIH 507
Query: 521 NNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSW 580
N+++G +A E++ + P Y++L +Y S GR+ +A ++ +K G+ P C+W
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
Query: 581 IQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEI--------EREILFDAY 623
I++ H F SGD HP+ + L+ L EI E E+L D
Sbjct: 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD 618
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 1e-53
Identities = 130/415 (31%), Positives = 206/415 (49%), Gaps = 44/415 (10%)
Query: 56 NTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGM------ 109
N +++ ++ + A VF M RD+ +WN ++ GY G DEAL ++H M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 110 PLKDVVSWNLVI---GALVNCQRMDLAESYFKEMG-ARDVASWTIMVNGLVREGRIVEAR 165
P DV ++ V+ G + + R ++ G DV ++ V+ G +V AR
Sbjct: 185 P--DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 166 KLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA 225
+FD+MP +D +WN MI+GY +NG +LF M R+L+ L+
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM--RELSVDPDLM----------- 289
Query: 226 AISYFKQMPETCEKTWNSIIS---VLIRNGLVKEAHSYLEKYPYS-NIASWTNVIVGYFE 281
T S+IS +L L +E H Y+ K ++ +++ ++I Y
Sbjct: 290 --------------TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335
Query: 282 MGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSV 341
+G G A KVF M T+D W MI G +N L ++ L+ + M++ SPD T SV
Sbjct: 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395
Query: 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDI 401
L+ C+ L LD+G ++H A + + V+NA+I MY++C I AL F ++P D+
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
Query: 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR 456
ISW SII GL + +AL F +M LT KP+ +T + LSAC+ G + G+
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 5e-46
Identities = 113/378 (29%), Positives = 173/378 (45%), Gaps = 33/378 (8%)
Query: 87 NSMISGYVCNGLIDEALRVFHGMP-LKDVVSWNLVIGALVNCQ--RMDLAESYFKEMGAR 143
NS + +G +++AL++ M L+ V + + C+ R S
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 144 DVASWTI-----MVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDL 198
S + M++ VR G +V A +F KMP +D+ +WN+++ GY G A L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 199 FQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAH 258
+ +M L G+ R D + F + TC I L R +E H
Sbjct: 175 YHRM----------LWAGV----RPD--VYTFPCVLRTCGG-----IPDLARG---REVH 210
Query: 259 SYLEKYPYSNIASWTN-VIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGE 317
+++ ++ + N +I Y + G+V SA VF+ M RD WN MI G EN
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270
Query: 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377
EGL+ F M+E PD T TSV++ C L LGR++H +K +V N++I
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 378 TMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI 437
MY G+ A FS + D +SW ++I G +G +KALE + M + PD+I
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 438 TFVGVLSACSYAGLVDQG 455
T VLSAC+ G +D G
Sbjct: 391 TIASVLSACACLGDLDVG 408
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 9e-28
Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 58/344 (16%)
Query: 20 DTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME 79
D N ++ + K G L +A LF++MPER++ ++ T+I GL+ + N + A +F M
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM- 215
Query: 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNC--QRMDLAESYF 137
W D R F M + G ++C + + F
Sbjct: 216 ------WED---------GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 138 KEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAED 197
D+ S + G I +AR +FD MP K AWN M+AGY +G A
Sbjct: 261 VSCALIDMYS---------KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 198 LFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLV--- 254
L+ +M R +I F T++ +I + R L+
Sbjct: 312 LYYEM------------------RDSGVSIDQF---------TFSIMIRIFSRLALLEHA 344
Query: 255 KEAHSYLEKYPY-SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313
K+AH+ L + + +I + T ++ Y + G + A VF+ M +++ WN +I G G +
Sbjct: 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404
Query: 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQI 357
G + ++ F +M G +P++ TF +VL+ C + G +I
Sbjct: 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 2e-17
Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 64/279 (22%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYNTVI-- 59
I++A+ +FD MP++ TV WN M+ GY +G+ + A+CL+ +M + D FT++ +I
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 60 --------------AGLMQS-------------------DNVQGAKEVFDGMEVRDVVTW 86
AGL+++ ++ A+ VFD M +++++W
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 87 NSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVA 146
N++I+GY +G +A+ +F M + V ++ A+++ R S E G
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY----SGLSEQGWEIFQ 450
Query: 147 SWT-------------IMVNGLVREGRIVEARKLFDKMPAK-DVQAWNLM-----IAGYL 187
S + M+ L REG + EA + + P K V W + I L
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510
Query: 188 DNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAA 226
+ G + AE L+ M L ++ L+N +S R A
Sbjct: 511 ELGRL-AAEKLY-GMGPEKLNNYVVLLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 5 RIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDM----FTYNTVIA 60
R+++A+N+FD+MP+++ ++WN +I GY +G A+ +F +M + T+ V++
Sbjct: 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
Query: 61 GLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVC-------NGLIDEALRVFHGMPLKD 113
S + E+F M + +M Y C GL+DEA + P K
Sbjct: 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAM--HYACMIELLGREGLLDEAYAMIRRAPFKP 492
Query: 114 VVS-WNLVIGALVNCQRMD-------LAESYFKEMGARDVASWTIMVNGLVREGRIVEAR 165
V+ W AL+ R+ LA MG + ++ +++N GR EA
Sbjct: 493 TVNMW----AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548
Query: 166 KLFDKMPAK 174
K+ + + K
Sbjct: 549 KVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 DTVTWNVMIRGYFKNGFLDNAMCLFNQMPER----DMFTYNTVIAGL 62
D VT+N +I GY K G ++ A+ LFN+M +R +++TY+ +I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 49/203 (24%), Positives = 96/203 (47%), Gaps = 11/203 (5%)
Query: 323 FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN--QFTTVSNAMITMY 380
F +M +G + TF +++ C+ + + A I ++N V NA+I+
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 381 ARCGNIQSA---LLEFS--SVPIH-DIISWNSIICGLAYHGYAEKALELFERMRLTDFKP 434
+ G + A L E + PI D I+ +++ A G ++A E+++ + + K
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNL 494
+ +++CS G D +D MK K ++P ++ +VD+ G G +D+A +
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 495 LNEIRADGIEVSPTVWGALLGAC 517
L + R GI++ + +L+GAC
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446
D++++N++I G G E+AL+LF M+ KP+ T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 8e-08
Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPLK----DVVSWNLVIGALVN 126
DVVT+N++I GY G ++EAL++F+ M + +V +++++I L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 1e-07
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 51 DMFTYNTVIAGLMQSDNVQGAKEVFDGMEVR----DVVTWNSMISGYVCN 96
D+ TYNT+I G + V+ A ++F+ M+ R +V T++ +I G C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL-CK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 112 KDVVSWNLVIGALVNCQRMDLAESYFKEMGAR----DVASWTIMVNGLVR 157
DVV++N +I +++ A F EM R +V +++I+++GL +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMP 110
DVVT+N++I G G +DEA+ + M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 15 KMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP 48
K + D VT+N +I G + G +D A+ L ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 144 DVASWTIMVNGLVREGRIVEARKLFDKMPAK----DVQAWNLMIAGY 186
DV ++ +++G ++G++ EA KLF++M + +V ++++I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-06
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 299 DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342
DV +N +I G + EE LK F +MK+ G P+ T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 93/553 (16%), Positives = 194/553 (35%), Gaps = 146/553 (26%)
Query: 1 MRNARIQEAQNLFDKMPQRDTVTWNVMIRGYF-----KNGFLDNAMCLFNQMPERDMFTY 55
+R+ RI++ +L + M +R + + + F K + A + + T+
Sbjct: 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTF 440
Query: 56 NTVIAGLMQSDNVQGAKEVFDGMEVR----DVVTWNSMISGYVCNGLIDEALRVFHGMPL 111
N +++ S ++ GA V ++ D + ++IS +G +D VFH
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH---- 496
Query: 112 KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKM 171
M A +V ++ +++G R G++ +A + M
Sbjct: 497 -----------------EMVNAGV------EANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 172 PAKDVQ----AWNLMIAGYLDNGCVGVAEDLFQKMH------DRDLTSWKQLINGLVNSR 221
+K+V+ +N +I+ +G V A D+ +M D D + L+ N+
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 222 RIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNI----ASWTNVIV 277
++D A KE + + +Y NI +T +
Sbjct: 594 QVDRA----------------------------KEVYQMIHEY---NIKGTPEVYTIAVN 622
Query: 278 GYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNAT 337
+ G+ A+ +++ M + V PD
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVK-------------------------------PDEVF 651
Query: 338 FTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP 397
F++++ + HA + A F + +A + G
Sbjct: 652 FSALVDVAG-----------HAGDLDKA---FEILQDARKQGI-KLG------------- 683
Query: 398 IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRY 457
+S++S++ + +KALEL+E ++ +P T +++A + +
Sbjct: 684 ---TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740
Query: 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517
MK L P + Y+ ++ R D ++LL++ + DGI+ + + + G C
Sbjct: 741 VLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
Query: 518 --RIHNNIKVGEI 528
R +GE
Sbjct: 800 LRRFEKACALGEP 812
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 84 VTWNSMISGYVCNGLIDEALRVFHGMPLKDV 114
VT+NS+ISGY G ++EAL +F M K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 22 VTWNVMIRGYFKNGFLDNAMCLFNQMPERDM 52
VT+N +I GY K G L+ A+ LF +M E+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 7e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 144 DVASWTIMVNGLVREGRIVEARKLFDKMP 172
DV ++ +++GL R GR+ EA +L D+M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 84 VTWNSMISGYVCNGLIDEALRVFHGMPLKDVV 115
VT+N++I G G ++EAL +F M + +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436
+++N++I GL G E+ALELF+ M+ +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 22 VTWNVMIRGYFKNGFLDNAMCLFNQMPERDM 52
VT+N +I G K G ++ A+ LF +M ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 147 SWTIMVNGLVREGRIVEARKLFDKMPAKDV 176
++ +++G + G++ EA +LF +M K V
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 402 ISWNSIICGLAYHGYAEKALELFERMR 428
+++NS+I G G E+ALELF+ M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 147 SWTIMVNGLVREGRIVEARKLFDKMPAKDVQ 177
++ +++GL + GR+ EA +LF +M + ++
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 174 KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR----DLTSWKQLINGLVN 219
DV +N +I GY G V A LF +M R ++ ++ LI+GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 46 QMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME 79
+ + D+ TYNT+I GL ++ V A E+ D ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 624 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.15 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.12 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.94 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.86 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.83 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.82 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.49 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.4 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.22 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.09 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.08 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.07 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.88 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.87 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.83 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.81 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.72 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.7 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.7 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.59 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.54 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.48 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.45 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.42 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.42 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.37 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.37 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.35 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.31 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.26 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.26 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.2 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.17 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.15 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.13 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.07 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.95 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.93 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.93 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.76 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.71 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.7 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.63 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.6 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.35 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.32 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.3 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.11 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.08 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.96 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.83 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.79 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.79 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.76 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.55 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.54 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.47 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.29 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.08 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.08 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.89 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.83 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.77 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.72 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 94.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.54 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.47 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.4 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.18 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.1 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.02 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.02 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.0 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.86 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.83 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.48 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.45 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.85 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.73 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.69 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.57 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 92.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.07 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 92.02 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.87 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.7 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.98 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.87 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.79 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.53 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 90.48 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.45 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.28 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.18 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.05 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 89.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.17 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.53 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.48 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.46 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.44 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.16 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.82 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.16 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.16 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.83 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.66 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.02 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.99 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.6 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.48 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.29 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.26 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.84 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.73 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.56 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.05 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.95 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.73 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.7 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.17 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 83.1 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.08 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.06 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.38 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.27 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.22 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.87 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.8 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.75 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.36 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.29 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-88 Score=735.35 Aligned_cols=612 Identities=33% Similarity=0.581 Sum_probs=593.3
Q ss_pred CCCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCChhhHHHHHhc
Q 006955 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGLMQSDNVQGAKEVFDG 77 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 77 (624)
|.|+++.|.++|++|++||..+|+.++.+|++.|++++|+.+|++|. .||..+|+.++.+|++.+++..+.+++..
T Consensus 133 ~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999996 69999999999999999999999998888
Q ss_pred CC----CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHH
Q 006955 78 ME----VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWT 149 (624)
Q Consensus 78 ~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 149 (624)
|. .||..+|++|+.+|++.|+++.|.++|++|.+||+.+|+.++.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 76 789999999999999999999999999999999999999999999999999999999999974 8999999
Q ss_pred HHHHHHHhCCChHHHHHHhccCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHH
Q 006955 150 IMVNGLVREGRIVEARKLFDKMP----AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA 225 (624)
Q Consensus 150 ~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (624)
.++.+|++.|+.+.|.+++..+. .+|..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|.+.|++++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHH
Confidence 99999999999999999999887 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 226 AISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 226 A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
|+++|++|.+ ||..||+.++.+|++.|+++.+.++++.+. .++..++++|+++|+++|++++|.++|++|.+
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999964 999999999999999999999999999988 77888999999999999999999999999999
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHH
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (624)
+|+.+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 9999999999999999999999999999986 599999999999999999999999999999999999999999999999
Q ss_pred HHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHH
Q 006955 378 TMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (624)
++|+++|++++|.++|+.+ .+|..+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|++|+.+|..+|+.+.++...+++.++.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999999778999999999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHh
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIERE 617 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (624)
|+++..|..|+++|...|+|++|.++.+.|++.|++++||+|||++++.+|.|.++|.+||+..+||..+.++..+++..
T Consensus 688 p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 688 PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 006955 618 I 618 (624)
Q Consensus 618 ~ 618 (624)
+
T Consensus 768 g 768 (857)
T PLN03077 768 G 768 (857)
T ss_pred C
Confidence 4
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-73 Score=602.30 Aligned_cols=508 Identities=29% Similarity=0.538 Sum_probs=466.1
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHhccCCC-----CCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHHHH
Q 006955 81 RDVVTWNSMISGYVCNGLIDEALRVFHGMPL-----KDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWTIM 151 (624)
Q Consensus 81 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l 151 (624)
++...++.++..+.+.|++++|+++|+.|.. ||..+|+.++.+|.+.++++.+.+++..|.+ ||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3555777777777777777777777777752 5667777777777777777777777777753 577777777
Q ss_pred HHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhh
Q 006955 152 VNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFK 231 (624)
Q Consensus 152 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 231 (624)
+.+|++.|+++.|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~------------------------ 220 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS------------------------ 220 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC------------------------
Confidence 77777777777777777777777777777777777777777777777777766554
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhh
Q 006955 232 QMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMI 307 (624)
Q Consensus 232 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 307 (624)
.|+..+|..++.+|.+.|..+.+.+++..+. .+|..++++|+++|+++|++++|.++|+.|..+|+.+||.++
T Consensus 221 ---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 221 ---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred ---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 6888999999999999999999999887776 788999999999999999999999999999999999999999
Q ss_pred hHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 308 FGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++|+..++++|+++|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC
Q 006955 388 SALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF 467 (624)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 467 (624)
+|.++|++|..||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|
T Consensus 378 ~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+.|+..+|+.++++|++.|++++|.+++++|. +.|+..+|++|+.+|..+|+++.|..+++++.++.|.+..+|..|
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 99999999999999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhh
Q 006955 548 TEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREI 618 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (624)
+++|.+.|++++|.+++++|++.|+++.||++||++.+.+|.|.++|.+||+..++|..+.++..++...+
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-71 Score=599.78 Aligned_cols=546 Identities=26% Similarity=0.377 Sum_probs=495.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCChhhHHHHHhcCC----CCCchhHHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP----ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME----VRDVVTWNSMI 90 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~ 90 (624)
++..+++.++.+|++.|++++|..+|+.|. .|+..+|..++.+|.+.+.++.+..++..+. .++..++|+|+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 566789999999999999999999999997 4788999999999999999999999998765 57889999999
Q ss_pred HHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcc----cCChhHHHHHHHHHHhCCChHHHHH
Q 006955 91 SGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMG----ARDVASWTIMVNGLVREGRIVEARK 166 (624)
Q Consensus 91 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~ 166 (624)
.+|++.|+.+.|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|+..+++..+.+
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 999999999999999999999999999999999999999999999999996 4899999999999999999999999
Q ss_pred HhccCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC----CCc
Q 006955 167 LFDKMP----AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE----TCE 238 (624)
Q Consensus 167 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~ 238 (624)
++..+. .+|+.+++.|+.+|++.|++++|.++|++|..+|..+|+.++.+|.+.|++++|+++|.+|.+ ||.
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 988886 579999999999999999999999999999999999999999999999999999999999974 999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCC
Q 006955 239 KTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEND 314 (624)
Q Consensus 239 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (624)
.||+.++.+|.+.|+.+.+.+++..+. .||..+|+.++.+|++.|++++|.++|++|..+|+.+||.++.+|++.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 999999999999999999999999988 7899999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhc
Q 006955 315 LGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFS 394 (624)
Q Consensus 315 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (624)
++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCC-----
Q 006955 395 SVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ----- 469 (624)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----- 469 (624)
+|..+|+.+||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~ 526 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFL 526 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCcccee
Confidence 99999999999999999999999999999999986 59999999999998888888887777777776653 443
Q ss_pred -------------------------CCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChH
Q 006955 470 -------------------------PRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 470 -------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+++
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 4566666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHc---cCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 525 VGEIAGERVME---LEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 525 ~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+|.++|+.|.+ +.| +..+|..++.+|.+.|++++|.+++++|
T Consensus 607 ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 607 QGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 77777777763 234 5567777777777777777777777766
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=524.69 Aligned_cols=498 Identities=17% Similarity=0.234 Sum_probs=384.1
Q ss_pred CCcchHHHHHHHHHcCCChhhHHHHHhcCCC-----CCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHH
Q 006955 50 RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEV-----RDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGAL 124 (624)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 124 (624)
++...|..+...+++.|++++|.++|+.|.. ++..+++.++..|.+.|..++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4455566666666666666666666666652 33445555666666666666666666666666666666666666
Q ss_pred HcCCChHHHHHHHHhccc----CChhHHHHHHHHHHhCCChHHHHHHhccCC----CCChhHHHHHHHHHHHcCChhHHH
Q 006955 125 VNCQRMDLAESYFKEMGA----RDVASWTIMVNGLVREGRIVEARKLFDKMP----AKDVQAWNLMIAGYLDNGCVGVAE 196 (624)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 196 (624)
++.|+++.|.+++++|.+ ||..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 666666666666666653 466666666666666666666666666665 356666666666666666666666
Q ss_pred HHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC------CCCcc
Q 006955 197 DLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP------YSNIA 270 (624)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~ 270 (624)
++|++|.+.+. .||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 528 ~lf~~M~~~Gv---------------------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 528 GAYGIMRSKNV---------------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 66666654332 4666677777777777777777777776663 56777
Q ss_pred hhhHHHHHHHhcCChHHHHHHHhhcCC----CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc
Q 006955 271 SWTNVIVGYFEMGEVGSAIKVFELMTT----RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346 (624)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 346 (624)
+|++++.+|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 788888888888888888888888864 4567888888888888888888888888888888888888888888888
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC----CCCchhHHHHHHHHHHcCChHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP----IHDIISWNSIICGLAYHGYAEKALE 422 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~ 422 (624)
+.|+++.|.+++..|.+.|++|+..+|+++|.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888888874 6788888888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----c-------------
Q 006955 423 LFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----F------------- 485 (624)
Q Consensus 423 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------------- 485 (624)
+|++|...|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||..+|+.++..|.+ +
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 8888888888888888888888888888888888888888875 688888888888765431 1
Q ss_pred ------CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCCchHHHHHHHHHhcCChH
Q 006955 486 ------GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME-LEPNNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 486 ------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~ 558 (624)
+..++|..+|++|.+.|+.||..+|+.++.++...+....+..+++.+.. ..+++..+|..|+.++.+. .+
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~ 897 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DP 897 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hH
Confidence 23467999999999999999999999999877888999999888887653 3455788999999988332 36
Q ss_pred HHHHHHHHHHHCCCccCCc
Q 006955 559 DAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 559 ~A~~~~~~m~~~~~~~~~~ 577 (624)
+|..++++|...|+.++..
T Consensus 898 ~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 898 RAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHcCCCCCcc
Confidence 8999999999999987764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=521.74 Aligned_cols=496 Identities=17% Similarity=0.234 Sum_probs=426.0
Q ss_pred CCCChhHHHHHHhhCCCCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 2 RNARIQEAQNLFDKMPQRD-----TVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
|.|++++|.++|++|.+++ ...++.++.+|.+.|.+++|+.+|..|..||..+|+.++.+|++.|+++.|.++|+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 5789999999999998644 44566777888999999999999999999999999999999999999999999999
Q ss_pred cCC----CCCchhHHHHHHHHHhCCChhHHHHHhccCC----CCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CC
Q 006955 77 GME----VRDVVTWNSMISGYVCNGLIDEALRVFHGMP----LKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RD 144 (624)
Q Consensus 77 ~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~ 144 (624)
.|. .||..+|+.||.+|++.|+.+.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+ ||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 887 6899999999999999999999999999997 38999999999999999999999999999963 78
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHhccCC------CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCC----cccHHHHH
Q 006955 145 VASWTIMVNGLVREGRIVEARKLFDKMP------AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRD----LTSWKQLI 214 (624)
Q Consensus 145 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~ 214 (624)
..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|+.|.+.+ ..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 8999999999999999999999999884 4688899999999999999999999999998754 46899999
Q ss_pred HHHHcCCCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChH
Q 006955 215 NGLVNSRRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVG 286 (624)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 286 (624)
.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++++.|. .++..+|+.+|.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999975 788899999999999999999999999988 688889999999999999999
Q ss_pred HHHHHHhhcC----CCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006955 287 SAIKVFELMT----TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAI 362 (624)
Q Consensus 287 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 362 (624)
+|.++|++|. .||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.++|..|.
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999884 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 006955 363 KIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGV 442 (624)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 442 (624)
+.|+.|+..+|++++.++.+ +++++..+.+.+.. |+. .......+..+.|+.+|++|.+.|+.||..||+.+
T Consensus 782 k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999998876432 34444444332221 100 00111112335699999999999999999999999
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
+.++...+..+.+..+++.+... +..|+..+|+++++++.+. .++|..++++|...|+.|+..
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 98888889999999999887754 4677899999999998433 478999999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-60 Score=502.35 Aligned_cols=487 Identities=20% Similarity=0.288 Sum_probs=445.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCC-----CCCcchHHHHHHHHHcCCChhhHHHHHhcCC----CCCchhHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP-----ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME----VRDVVTWNSM 89 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l 89 (624)
++..+|+.++.+|.+.|++++|+.+|+.|. .||..+|+.++.+|++.++++.+..++..|. .||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999996 4688999999999999999999999999886 7899999999
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHHHHHHHHHhCCChHHHH
Q 006955 90 ISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWTIMVNGLVREGRIVEAR 165 (624)
Q Consensus 90 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~ 165 (624)
+.+|++.|+++.|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+++..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999964 68899999999999999999999
Q ss_pred HHhccCC----CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCC----CCC
Q 006955 166 KLFDKMP----AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMP----ETC 237 (624)
Q Consensus 166 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~ 237 (624)
+++..+. .+|..+|+.|+.+|++.|++++|.++|++|.++|..+|+.++.+|.+.|++++|+++|++|. .||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9987775 56899999999999999999999999999999999999999999999999999999999995 489
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcC
Q 006955 238 EKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEN 313 (624)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (624)
..||+.++.+|++.|++++|.+++..+. ++|..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 9999999999999999999999999988 889999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hCCCCCcchhHHHHHHhHhhCCHHHHHHH
Q 006955 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK-IARNQFTTVSNAMITMYARCGNIQSALLE 392 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (624)
|+.++|+++|++|.+.|+.||..||+.++.+|++.|.++++.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 69999999999999999999999999999
Q ss_pred hccCC-CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC
Q 006955 393 FSSVP-IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470 (624)
Q Consensus 393 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 470 (624)
++++. .|+..+|++++.+|..+|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99997 78999999999999999999999999999975 5665 569999999999999999999999999986 5543
Q ss_pred -CcchHHHHH---HHhh----cc----CChHHHHHHHHHcccCCCCcCHH
Q 006955 471 -RSAHYTCVV---DLLG----RF----GLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 471 -~~~~~~~l~---~~~~----~~----g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
...+|..+. ..+. .. .-++...++..+|.+.|..|+..
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 222221110 0000 00 11345567788889999999854
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.93 Aligned_cols=563 Identities=12% Similarity=0.074 Sum_probs=381.1
Q ss_pred CCCChhHHHHHHhhCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHH
Q 006955 2 RNARIQEAQNLFDKMPQRDTV---TWNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVF 75 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 75 (624)
+.|++++|...|+++.+.++. .+..+...+...|++++|...|+++. +.+..++..+...+.+.|++++|...+
T Consensus 273 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred HhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 457788888888777663332 33344556677788888888887766 234456666777777788888888877
Q ss_pred hcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhcccC---Chh
Q 006955 76 DGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGAR---DVA 146 (624)
Q Consensus 76 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 146 (624)
+.+. +.+..++..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...++.+.+. ...
T Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 432 (899)
T TIGR02917 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh
Confidence 7665 34556777777778888888888888877664 3 3345666667777777777777777777642 234
Q ss_pred HHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcC
Q 006955 147 SWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNS 220 (624)
Q Consensus 147 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 220 (624)
....++..+.+.|++++|.++++.+.. .++.++..++..+...|++++|.+.|+++.+. +...+..+...+...
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 455566677777777777777777652 35567777777777777777777777776543 233566666777777
Q ss_pred CCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhh
Q 006955 221 RRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFEL 294 (624)
Q Consensus 221 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (624)
|++++|.+.++.+.+ .+..++..+...+.+.|+.++|...++++. +.+...+..++..|.+.|++++|..+++.
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777654 234466666677777777777777777665 44455566677777777777777777776
Q ss_pred cCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc
Q 006955 295 MTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371 (624)
Q Consensus 295 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (624)
+.. .+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|+++.|..+++.+.+.. +.+..
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 670 (899)
T TIGR02917 593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE 670 (899)
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence 653 245567777777777777777777777776542 3344556666667777777777777777766543 33455
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..++..+...|++++|..+++.+. +++...+..+...+...|++++|...++++.+. .|+..++..+..++..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence 66667777777777777777776665 334556666667777777777777777777663 4555566666667777
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.|++++|.+.++++.+. .+.++..+..+...|...|++++|.+.|+++.+.. ++++.++..+...+...|+ .+|..
T Consensus 749 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 77777777777776663 22356666677777777777777777777776643 4456667777777777777 66777
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 529 AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
.++++.+..|.++..+..++.+|...|++++|.++++++.+.+.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777777777777777777777777777766553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=335.63 Aligned_cols=559 Identities=11% Similarity=0.083 Sum_probs=339.5
Q ss_pred CCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 3 NARIQEAQNLFDKMPQ---RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE---RDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 3 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
.|++++|...|+++.+ .++..+..+...+.+.|++++|...++.+.+ .+...+..+...+.+.|++++|..+|+
T Consensus 308 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4666666666666554 2334455555666666666666666666652 234556666666666666666666666
Q ss_pred cCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhccc---CChhH
Q 006955 77 GME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGA---RDVAS 147 (624)
Q Consensus 77 ~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 147 (624)
++. +.+...+..+...+...|++++|.+.++.+.+ | +......++..+.+.|++++|..+++.+.+ .++.+
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 467 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 554 23445566666666666666666666666553 2 223444555566666666666666666654 24455
Q ss_pred HHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCC
Q 006955 148 WTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSR 221 (624)
Q Consensus 148 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 221 (624)
+..+...+...|++++|.+.|+++.+ .+...+..++..+...|++++|.+.++++.+. +..++..+...+...|
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 66666666666666666666666542 24455566666666666666666666666542 3335556666666666
Q ss_pred CHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhc
Q 006955 222 RIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 222 ~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 295 (624)
+.++|..+++++.+ .+...+..+...+...|++++|..+++.+. +.+..+|..+..+|...|++++|...|+.+
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666543 233345556666666666666666666665 444556666666666666666666666665
Q ss_pred CC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcch
Q 006955 296 TT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372 (624)
Q Consensus 296 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (624)
.+ .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 42 234455666666666666666666666665542 2334556666666666666666666666666554 334455
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG 450 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 450 (624)
+..+...+...|++++|...|+++. .|+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 5556666666666666666666654 3444555556666666666666666666666532 334445556666666666
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
++++|..+|+++.+. .++++..++.++..+...|+ .+|+.+++++.+.. +.++.++..+..++...|++++|...+
T Consensus 785 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 785 DYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666653 12355666666666666666 66666666665531 223455556666666666666666666
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+++++..|.++.++..++.+|...|++++|.+++++|+
T Consensus 861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-27 Score=264.37 Aligned_cols=557 Identities=12% Similarity=0.049 Sum_probs=402.2
Q ss_pred CCCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchH-----------------HHHH
Q 006955 2 RNARIQEAQNLFDKMPQ---RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--RDMFTY-----------------NTVI 59 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~l~ 59 (624)
..++.+.|.+.++++.. .|+.++..++..+.+.|+.++|.+.+++..+ |+...+ ..+.
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 35778888888888775 3556777777788888888888888888873 332221 2334
Q ss_pred HHHHcCCChhhHHHHHhcCCC---CCchh-HHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHH
Q 006955 60 AGLMQSDNVQGAKEVFDGMEV---RDVVT-WNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDL 132 (624)
Q Consensus 60 ~~~~~~~~~~~A~~~~~~~~~---~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 132 (624)
..+.+.|++++|+..|+.+.. |+... ...+.......|+.++|++.++++.+ | ++..+..+...+...|+.++
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence 457778888888888887762 22211 11111122235788888888888875 4 34456777777778888888
Q ss_pred HHHHHHhcccCCh-----------------------hHH----------------------------------HHHHHHH
Q 006955 133 AESYFKEMGARDV-----------------------ASW----------------------------------TIMVNGL 155 (624)
Q Consensus 133 a~~~~~~~~~~~~-----------------------~~~----------------------------------~~l~~~~ 155 (624)
|...++++.+... ..+ ......+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 8888877642100 000 0112345
Q ss_pred HhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcc-----cHH------------HHHH
Q 006955 156 VREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT-----SWK------------QLIN 215 (624)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~------------~l~~ 215 (624)
...|++++|+..|++..+ .+..++..+...+.+.|++++|+..|++..+.++. .+. ....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 667888888888877763 36678888888888888888888888888763321 111 1234
Q ss_pred HHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHH
Q 006955 216 GLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAI 289 (624)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 289 (624)
.+.+.|++++|++.|++..+ | +...+..+...+...|++++|++.|+++. +.+...+..+...|. .++.++|.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 56778888888888888775 3 34456667788888888888888888877 444555666666664 45678888
Q ss_pred HHHhhcCCCC------------ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHH
Q 006955 290 KVFELMTTRD------------VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQ 356 (624)
Q Consensus 290 ~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 356 (624)
.+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|..
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887665321 123445566778899999999999998875 454 4566778888999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC----Cc---------hhHHHHHHHHHHcCChHHHHHH
Q 006955 357 IHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH----DI---------ISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.++.+.+.. +.+......+...+...|+.++|+..++.+... +. ..+..+...+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999988754 334444444556677889999999999987632 11 1123345678889999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
++. .+++...+..+...+.+.|+.++|+..++++.+. .| ++..+..++..|...|++++|++.++...+
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~-- 665 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA-- 665 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--
Confidence 872 3445567777888999999999999999999984 46 788899999999999999999999998876
Q ss_pred CCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc------hHHHHHHHHHhcCChHHHHHHHHHHHH-CCC
Q 006955 503 IEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG------VYLILTEMYLSCGRREDAKRIFAQMKE-NGV 572 (624)
Q Consensus 503 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~ 572 (624)
..| ++..+..+..++...|++++|..+++++++..|.++. .+..++.++...|++++|...+++... .|+
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 344 4667777888899999999999999999998765543 567789999999999999999998853 344
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-25 Score=249.73 Aligned_cols=538 Identities=10% Similarity=0.037 Sum_probs=384.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCc-hh------------
Q 006955 24 WNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDV-VT------------ 85 (624)
Q Consensus 24 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~------------ 85 (624)
.-..++.+-..++.+.|.+.++++. ..++.++..++..+.+.|+.++|...++++. .|+. ..
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 3334566778999999999999987 3467888889999999999999999999886 3332 22
Q ss_pred ----HHHHHHHHHhCCChhHHHHHhccCCC--CCcccHH--HHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHH
Q 006955 86 ----WNSMISGYVCNGLIDEALRVFHGMPL--KDVVSWN--LVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNG 154 (624)
Q Consensus 86 ----~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~ 154 (624)
...+...+...|++++|++.|+...+ |+..... .........|+.++|...++++.+. ++..+..+...
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23345578899999999999999986 3322211 1122223469999999999999873 55678888899
Q ss_pred HHhCCChHHHHHHhccCCCCCh------h-----------------HHH-------------------------------
Q 006955 155 LVREGRIVEARKLFDKMPAKDV------Q-----------------AWN------------------------------- 180 (624)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~~~------~-----------------~~~------------------------------- 180 (624)
+...|+.++|++.++++.+... . .+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999987642110 0 000
Q ss_pred ---HHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcc---hH--------
Q 006955 181 ---LMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE--TCEK---TW-------- 241 (624)
Q Consensus 181 ---~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~-------- 241 (624)
.....+...|++++|+..|++..+. +...+..+..++.+.|++++|+..|++..+ |+.. .+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 1133455667888888888777653 344677777778888888888888777664 3221 11
Q ss_pred ----HHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhh
Q 006955 242 ----NSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLG 311 (624)
Q Consensus 242 ----~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 311 (624)
......+.+.|++++|...++++. +.+...+..+...+...|++++|++.|+++.+. +...+..+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112345567788888888877777 445556666777788888888888888777642 3334445555553
Q ss_pred cCCCchHHHHHHHHhHHcCCC--------CCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 312 ENDLGEEGLKFFVQMKESGPS--------PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 312 ~~~~~~~a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
.++.++|+.+++.+...... .....+..+...+...|++++|...++++.+.. +.++.++..+...|.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34667777777655332100 001123345556677888888888888887764 33455666788888888
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh---------hHHHHHHHhcccCh
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI---------TFVGVLSACSYAGL 451 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~ 451 (624)
|++++|...++++. +.++..+..+...+...+++++|+..++.+......++.. .+......+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 89998888888764 3344555555556677888888888888765432222221 12234556778899
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
.++|..+++. .++++..+..+...+.+.|++++|++.|++..+. .| ++..+..++..+...|++++|+..+
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999988772 2346677788999999999999999999999874 45 5788999999999999999999999
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+++.+..|.++..+..++.++...|++++|.++++++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999987764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-24 Score=232.78 Aligned_cols=552 Identities=11% Similarity=0.003 Sum_probs=413.6
Q ss_pred CCChhHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHcCCChhhHHHHHhc
Q 006955 3 NARIQEAQNLFDKMPQ--R-DTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--RDMFTYNTVIAGLMQSDNVQGAKEVFDG 77 (624)
Q Consensus 3 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 77 (624)
.|++++|...|+++.+ | ++.++..|.+.|.+.|+.++|+..+++... |+...|..++..+ +++++|..++++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 5999999999999987 3 345778888999999999999999999984 4434444434333 888999999999
Q ss_pred CC---CCCchhHHHHHHH--------HHhCCChhHHHHHhccCCCCC--cccHHHH-HHHHHcCCChHHHHHHHHhcccC
Q 006955 78 ME---VRDVVTWNSMISG--------YVCNGLIDEALRVFHGMPLKD--VVSWNLV-IGALVNCQRMDLAESYFKEMGAR 143 (624)
Q Consensus 78 ~~---~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~ 143 (624)
+. +.+..++..+... |.+.++..++++ .+...|+ +.+.... .+.|.+.|+++.|+.+++++.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 87 4456777777776 777777777776 3344454 4434444 88999999999999999999874
Q ss_pred ---ChhHHHHHHHHHHh-CCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC--------------
Q 006955 144 ---DVASWTIMVNGLVR-EGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR-------------- 205 (624)
Q Consensus 144 ---~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------- 205 (624)
+..-...|..+|.. .++ +.+..+++...+.++..+..++..|.+.|+.++|.+.++++..-
T Consensus 212 ~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 212 NTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred CCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 44446667777877 466 88888887655678999999999999999999999999998641
Q ss_pred -----C----------------cccHHHHHHHHHcCCCHHHHHHHhhhCCC-----------------------------
Q 006955 206 -----D----------------LTSWKQLINGLVNSRRIDAAISYFKQMPE----------------------------- 235 (624)
Q Consensus 206 -----~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------------- 235 (624)
+ ..+.-.++..+.+.++++.+.++...-..
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 0 00123346677777887777666432110
Q ss_pred --C-CcchHHHHHHHHHhcCChHHHHHHHhhcCC--CC----cchhhHHHHHHHhcCC---hHHHHHHHh----------
Q 006955 236 --T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPY--SN----IASWTNVIVGYFEMGE---VGSAIKVFE---------- 293 (624)
Q Consensus 236 --~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~---~~~A~~~~~---------- 293 (624)
| +......+.-...+.|+.++|..+++...+ .+ ......++..|.+.+. ..++..+-.
T Consensus 371 ~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 371 QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 1 112222333456788999999999999883 21 2234467888888776 333333311
Q ss_pred ---------------hcCC---C--CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHH
Q 006955 294 ---------------LMTT---R--DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDL 353 (624)
Q Consensus 294 ---------------~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 353 (624)
.... + +...|..+..++.. +++++|+..+.+.... .|+......+..++...|+++.
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHH
Confidence 1111 1 33456666666665 7888999988877665 5776655455556678999999
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHH---HHHHHHHcCChHHHHHHHHHHHHC
Q 006955 354 GRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNS---IICGLAYHGYAEKALELFERMRLT 430 (624)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~ 430 (624)
|...++.+... +|+......+..++.+.|+.++|...+++....++...+. +.......|++++|+..+++..+
T Consensus 528 Ai~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~- 604 (987)
T PRK09782 528 ALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN- 604 (987)
T ss_pred HHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-
Confidence 99999987554 3444445667788899999999999998877433333333 33344455999999999999988
Q ss_pred CCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHH
Q 006955 431 DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPT 508 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~ 508 (624)
..|+...+..+..++.+.|+.++|...+++..+ +.| +...++.+..++...|++++|++.+++..+ ..| ++.
T Consensus 605 -l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~ 678 (987)
T PRK09782 605 -IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPA 678 (987)
T ss_pred -hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 567778888888999999999999999999987 456 677888899999999999999999999887 455 577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
.+..+..++...|++++|+..+++++++.|++..+....++......+++.|.+-+++....++
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8899999999999999999999999999999999999999999999999999998887766554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-23 Score=217.85 Aligned_cols=532 Identities=11% Similarity=0.037 Sum_probs=385.7
Q ss_pred hHHHHHHHH--HhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCChhhHHHHHhcCC--CCC-chhHHHHHHHHH
Q 006955 23 TWNVMIRGY--FKNGFLDNAMCLFNQMPE---RDMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRD-VVTWNSMISGYV 94 (624)
Q Consensus 23 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~ 94 (624)
++..+..+. ...|++++|+..|+++.+ .+..++..|...|...|++++|+..+++.. .|+ ...+..+ ...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh-
Confidence 444455544 345999999999999983 346788999999999999999999999987 343 3444444 222
Q ss_pred hCCChhHHHHHhccCCC--CC-cccHHHHHHH--------HHcCCChHHHHHHHHhcccCC--hhHHH-HHHHHHHhCCC
Q 006955 95 CNGLIDEALRVFHGMPL--KD-VVSWNLVIGA--------LVNCQRMDLAESYFKEMGARD--VASWT-IMVNGLVREGR 160 (624)
Q Consensus 95 ~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~--~~~~~-~l~~~~~~~g~ 160 (624)
+++++|..+++++.. |+ ...+..+... |.+.++..+++. .+...++ +.+.. .+..+|...|+
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999999985 53 4455555554 666666666665 3333444 44344 44889999999
Q ss_pred hHHHHHHhccCCCC---ChhHHHHHHHHHHHc-CChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC-
Q 006955 161 IVEARKLFDKMPAK---DVQAWNLMIAGYLDN-GCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE- 235 (624)
Q Consensus 161 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 235 (624)
++.|++.+.++.+. +......|...|... ++ +.+..+++...+.++..+..++..|.+.|+.++|.+++.++..
T Consensus 198 w~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 198 WSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 99999999999854 445566777788883 77 8888888876667888899999999999999999999999863
Q ss_pred ----CCcchH------------------------------HHHHHHHHhcCChHHHHHHHhhcC----------------
Q 006955 236 ----TCEKTW------------------------------NSIISVLIRNGLVKEAHSYLEKYP---------------- 265 (624)
Q Consensus 236 ----~~~~~~------------------------------~~ll~~~~~~~~~~~a~~~~~~~~---------------- 265 (624)
|+..++ ..++..+.+.+.++-++++...-.
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 222211 112455667777777766643221
Q ss_pred ----------------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC-C-Cc----eehhhhhhHhhcCCC---chHHH
Q 006955 266 ----------------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT-R-DV----TVWNVMIFGLGENDL---GEEGL 320 (624)
Q Consensus 266 ----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~----~~~~~l~~~~~~~~~---~~~a~ 320 (624)
+.+....-.+.....+.|+.++|.++|+.... + +. ..-+-++..|.+.+. ..++.
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 11223333344445667888888888887765 2 22 122345555655554 22332
Q ss_pred HH----------------------HHHhHHc-CC-CC--CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhH
Q 006955 321 KF----------------------FVQMKES-GP-SP--DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSN 374 (624)
Q Consensus 321 ~~----------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (624)
.+ +...... +. ++ +...+..+..++.. ++.++|...+....... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 22 2221111 11 23 45566666666655 78888999888777654 3433333
Q ss_pred HHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccCh
Q 006955 375 AMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGL 451 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~ 451 (624)
.+...+...|++++|...|+++. +|+...+..+..++...|++++|...+++..+. .|+.. .+..+...+...|+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCC
Confidence 44555578999999999998776 345556777788889999999999999999885 35443 33334445556799
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
+++|...+++..+ +.|+...+..+..++.+.|+.++|+..+++..+ ..| ++..+..+..++...|++++|+..+
T Consensus 592 ~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 592 PELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999987 468888899999999999999999999999988 456 5678888888999999999999999
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-22 Score=189.50 Aligned_cols=432 Identities=14% Similarity=0.139 Sum_probs=306.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcccCCh---hHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHcCC
Q 006955 118 NLVIGALVNCQRMDLAESYFKEMGARDV---ASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 191 (624)
..|..-..+.|++.+|++.....-..|+ .....+-..+....+.+....--.... .....+|..+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3344444556666666666555544322 111122233444444443332222111 1234567777777777777
Q ss_pred hhHHHHHHHHcccCC---cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCc--ch-HHHHHHHHHhcCChHHHHHHHhhcC
Q 006955 192 VGVAEDLFQKMHDRD---LTSWKQLINGLVNSRRIDAAISYFKQMPETCE--KT-WNSIISVLIRNGLVKEAHSYLEKYP 265 (624)
Q Consensus 192 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (624)
+++|+.+++.+.+.+ +..|..+..++...|+.+.|...|.+..+-|+ .. .+.+...+-..|++++|...+-++.
T Consensus 132 ~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 777777777776533 34566677777777777777777766665333 32 2223444555677777777766666
Q ss_pred ---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCc---eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHH
Q 006955 266 ---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDV---TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATF 338 (624)
Q Consensus 266 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~ 338 (624)
+.-..+|+.|...+...|++..|+..|++..+-|+ ..|-.|...|-..+.+++|+..|.+.... .|+ ...+
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~ 289 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAH 289 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhc
Confidence 22344577777777777777777777777765443 45666777777777777777777766543 454 3456
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcC
Q 006955 339 TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHG 415 (624)
Q Consensus 339 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 415 (624)
..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++...|++.+|...+.+.. .....+.+.|...|...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 666666677777888887777776643 3345567778888888888888888887765 334567888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHH
Q 006955 416 YAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
.++.|..+|....+ +.|.- ..++.|...|.+.|++++|+..+++..+ +.|+ ...|+.+...|...|+...|++
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999887 67775 5788999999999999999999999987 7885 7889999999999999999999
Q ss_pred HHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 494 LLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 494 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
.+.+.+. +.|. ...++.|...|...|+..+|+..|+.++++.|+.|.+|-.++.++---.+|.+
T Consensus 444 ~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 444 CYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999987 6676 55889999999999999999999999999999999999999887765554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-21 Score=180.51 Aligned_cols=414 Identities=11% Similarity=0.121 Sum_probs=343.9
Q ss_pred HHHHHHHHHhCCChHHHHHHhccCCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCC
Q 006955 148 WTIMVNGLVREGRIVEARKLFDKMPAKDV---QAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSR 221 (624)
Q Consensus 148 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 221 (624)
...|.+-..+.|++.+|++....+-..|+ ...-.+-..+.+..+++....--....+. ...+|..+.+.+...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 56677778899999999998766653322 22223334566666666665554444443 3457999999999999
Q ss_pred CHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---hhhHHHHHHHhcCChHHHHHHHhhc
Q 006955 222 RIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIA---SWTNVIVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 222 ~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 295 (624)
++++|+.+++.+.+ | ....|..+..++...|+.+.|.+.|......++. +.+.+.......|++.+|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999987 3 3458999999999999999999999988844443 3455677778899999999998877
Q ss_pred CC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc
Q 006955 296 TT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371 (624)
Q Consensus 296 ~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (624)
.. | -...|+.|...+..+|+...|+..|++..+. .|+ ...|..+...+...+.++.|...+..+.... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 64 3 3568999999999999999999999998764 555 3578888889999999999999988877653 33445
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC--CC-CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP--IH-DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACS 447 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 447 (624)
++..+...|-.+|.++-|+..+++.. .| =+..|+.|..++...|+..+|+..+.+... +.|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 56668888999999999999999887 33 346899999999999999999999999988 56664 58889999999
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKV 525 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 525 (624)
..|.+++|..++....+ +.| -....+.|...|-..|++++|+..+++.+. ++|+ ...++.+...|...|+...
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999887 557 466788999999999999999999999887 7887 5689999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-+++.++..
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-19 Score=178.50 Aligned_cols=558 Identities=13% Similarity=0.099 Sum_probs=397.8
Q ss_pred hhHHHHHHhhCCCCCcc-hHHHHHHH--HHhcCChHHHHHHHhhCC--C----CCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 6 IQEAQNLFDKMPQRDTV-TWNVMIRG--YFKNGFLDNAMCLFNQMP--E----RDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 6 ~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~g~~~~A~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
++.|...|..+.+.++. +...|.++ ....|++..|+.+|..+. . +|+. -.+..++.+.|+.+.|+..|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 57888888888875444 33334444 356789999999999965 2 3332 233456668899999999999
Q ss_pred cCCCCCchhHHHHHH---HHHhCC---ChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChHHHHHHHHhcccCC---
Q 006955 77 GMEVRDVVTWNSMIS---GYVCNG---LIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMDLAESYFKEMGARD--- 144 (624)
Q Consensus 77 ~~~~~~~~~~~~l~~---~~~~~g---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 144 (624)
+..+-|+...++++. .-.... .+..++..+...-. .||...+.|.+.+..-|++..+..+...+...+
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 887544443333333 223333 34455555554432 578889999999999999999999998887642
Q ss_pred ---hhHHHHHHHHHHhCCChHHHHHHhccCCCC---C-hhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHH
Q 006955 145 ---VASWTIMVNGLVREGRIVEARKLFDKMPAK---D-VQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLI 214 (624)
Q Consensus 145 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~ 214 (624)
...|--+..+|...|++++|.+.|.+..+. + +..+.-++..+.+.|+++.+...|+.+.+. +..+...|.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 345778889999999999999999877643 2 445667788999999999999999999763 334666666
Q ss_pred HHHHcCC----CHHHHHHHhhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHhhcC--------CCCcchhhHHHHHH
Q 006955 215 NGLVNSR----RIDAAISYFKQMPET---CEKTWNSIISVLIRNGLVKEAHSYLEKYP--------YSNIASWTNVIVGY 279 (624)
Q Consensus 215 ~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~ 279 (624)
..|...+ ..+.|..++....++ |...|..+...+...+-+.. ..+|..+. +..+.+.|.+...+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 6666664 557777777777664 44466666666554433322 44443333 66777899999999
Q ss_pred HhcCChHHHHHHHhhcCCC-------Cce------ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHH-HHHHHHHH
Q 006955 280 FEMGEVGSAIKVFELMTTR-------DVT------VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNAT-FTSVLTIC 345 (624)
Q Consensus 280 ~~~g~~~~A~~~~~~~~~~-------~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~ 345 (624)
...|++.+|...|+..... +.. +--.+...+-..++++.|.+.|+.+.+. .|.-.+ |.-++...
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHH
Confidence 9999999999999877532 221 1223445566678899999999998876 566543 33333334
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-----CCCchhHHHHHHHHHH-------
Q 006955 346 SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-----IHDIISWNSIICGLAY------- 413 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------- 413 (624)
...+...+|...+..+.... ..++.+.+-+...|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 45577888888888777643 4455555656668888888888877554443 3355554455554432
Q ss_pred -----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCCh
Q 006955 414 -----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 414 -----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 488 (624)
.+..++|+++|.+.+... +-|...-+.+.-.++..|++++|..+|..+.+. ..-...+|-.+.++|...|++
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHH
Confidence 245678899999888742 345567777888899999999999999999986 334678888999999999999
Q ss_pred HHHHHHHHHcccC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh--------------
Q 006955 489 DEAMNLLNEIRAD-GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS-------------- 553 (624)
Q Consensus 489 ~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------- 553 (624)
..|+++|+...+. .-..++.+...|..++...|.+.+|......++...|.|+..-..++.+..+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~e 776 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLE 776 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHH
Confidence 9999999986654 3344688999999999999999999999999999999999887766665543
Q ss_pred -----cCChHHHHHHHHHHHHCCC
Q 006955 554 -----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 554 -----~g~~~~A~~~~~~m~~~~~ 572 (624)
.+..+.|.++|..|...+-
T Consensus 777 ev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 777 EVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2446777788888877664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=180.29 Aligned_cols=527 Identities=11% Similarity=0.073 Sum_probs=388.3
Q ss_pred hHHHHHHHhhCCCCCc-chHHHHHHHHH--cCCChhhHHHHHhcCC------CCCchhHHHHHHHHHhCCChhHHHHHhc
Q 006955 37 LDNAMCLFNQMPERDM-FTYNTVIAGLM--QSDNVQGAKEVFDGME------VRDVVTWNSMISGYVCNGLIDEALRVFH 107 (624)
Q Consensus 37 ~~~A~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 107 (624)
++.|...|....+.++ .+...+..++. ..+++..|+.+|.... +||+.+ .+..++.+.|+.+.|+..|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 4888888888874332 34444555554 5789999999999854 345443 44567789999999999999
Q ss_pred cCCCCCcccHHHHHHHHH---cC---CChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCCCCC---
Q 006955 108 GMPLKDVVSWNLVIGALV---NC---QRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMPAKD--- 175 (624)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~---~~---~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 175 (624)
+..+-|+...++++.... .. ..+..+..++...-. .+|...+.|.+.|.-.|++..+..+...+....
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 999866654444443322 22 344556666655543 488999999999999999999999987776432
Q ss_pred ---hhHHHHHHHHHHHcCChhHHHHHHHHcccCC----cccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHH
Q 006955 176 ---VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRD----LTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSII 245 (624)
Q Consensus 176 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll 245 (624)
...|..+.++|-..|++++|...|.+..+.+ +.++..|.+.|+..|+.+.+...|+...+ | +..+...+.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3468889999999999999999999887632 33577899999999999999999999886 4 345777777
Q ss_pred HHHHhcC----ChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcC--------CCCceehhhhhhHh
Q 006955 246 SVLIRNG----LVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMT--------TRDVTVWNVMIFGL 310 (624)
Q Consensus 246 ~~~~~~~----~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~ 310 (624)
..|...+ ..+.|..++.+.. +.|...|-.+...+...+-+ .++..|..+. ..-+...|.+...+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 7777665 5677888887777 45555666666666554433 3355444332 23556788999999
Q ss_pred hcCCCchHHHHHHHHhHHc---CCCCCH------HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhH
Q 006955 311 GENDLGEEGLKFFVQMKES---GPSPDN------ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYA 381 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (624)
...|++.+|...|.+.... ...++. .+-..+.......++.+.|...+..+.+..+ .-+..|-.++.+-.
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHH
Confidence 9999999999999987654 223333 2223445556677899999999999988642 11222222332222
Q ss_pred hhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcc---------
Q 006955 382 RCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTD-FKPDDITFVGVLSACSY--------- 448 (624)
Q Consensus 382 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~--------- 448 (624)
..++..+|..++..+. ..++..|+.+...+.....+..|.+-|....+.- ..+|..+...|...|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 3357778888888766 5677888888889999999999988777766532 23566666666654432
Q ss_pred ---cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChH
Q 006955 449 ---AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 449 ---~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
.+..+.|+++|.++.+ ..| |...-|.+.-+++..|++.+|..+|.+..+.. .....+|..+..+|...|++.
T Consensus 622 ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHH
Confidence 2456788888888887 346 88888999999999999999999999998764 345678999999999999999
Q ss_pred HHHHHHHHHHcc--CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 525 VGEIAGERVMEL--EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 525 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.|+++|+.+.+. ..+++.+...|++++.+.|++.+|.+.+.......
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999983 34467889999999999999999999988776553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-19 Score=186.55 Aligned_cols=251 Identities=14% Similarity=0.091 Sum_probs=198.9
Q ss_pred CCCchHHHHHHHHhHHcC-CCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHH
Q 006955 313 NDLGEEGLKFFVQMKESG-PSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSAL 390 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (624)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|+++.|...++...+.. +.....+..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887754 2343 3456666667778888999988888887753 223446667788888899999999
Q ss_pred HHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 391 LEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 391 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
..|+++. +.++..|..+...+...|++++|...|++..+. .|+ ...+..+...+.+.|++++|...+++..+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9888765 446778889999999999999999999999884 555 456777778889999999999999998874
Q ss_pred CCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH-HH-------HHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 467 FLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP-TV-------WGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 467 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
.| ++..++.+..++...|++++|++.|++..+. .|+. .. ++.....+...|++++|..+++++++++
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35 6788999999999999999999999998763 3321 11 1112222334699999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|.+...+..++.++...|++++|.+.+++..+..
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9888899999999999999999999999987653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=178.64 Aligned_cols=288 Identities=11% Similarity=0.065 Sum_probs=194.5
Q ss_pred hcCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC---HHHHHHHHHHHcCCCCcHHH
Q 006955 281 EMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD---NATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 281 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a 354 (624)
..|++++|...|.++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444321 222344444445555555555555555444321111 12334444455555555555
Q ss_pred HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CC------chhHHHHHHHHHHcCChHHHHHHHHH
Q 006955 355 RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HD------IISWNSIICGLAYHGYAEKALELFER 426 (624)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (624)
..+|..+.+. .+.+..+++.++..+.+.|++++|.+.++.+.. |+ ...+..+...+...|++++|...+++
T Consensus 127 ~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555443 122344455555566666666666666555541 11 11345677778889999999999999
Q ss_pred HHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 427 MRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 427 m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
+.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ..+++.++.+|...|++++|.+.++++.+ .
T Consensus 206 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 278 (389)
T PRK11788 206 ALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E 278 (389)
T ss_pred HHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 9874 344 457777888899999999999999998874 343 45678899999999999999999999887 4
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCccCCc
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS---CGRREDAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 577 (624)
.|+...+..++..+...|++++|...++++++..|+++ .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778888999999999999999999999999554 66666665553 569999999999999999988887
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-17 Score=174.98 Aligned_cols=414 Identities=12% Similarity=-0.028 Sum_probs=271.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccc--CChhHHHHHHHHHHhCCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCC
Q 006955 117 WNLVIGALVNCQRMDLAESYFKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 191 (624)
+......+.+.|++++|+..|++..+ |++..|..+..+|.+.|++++|++.++...+. +..++..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34455566667777777777776654 55566666777777777777777777666532 44566677777777777
Q ss_pred hhHHHHHHHHcccCCcc---cHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 006955 192 VGVAEDLFQKMHDRDLT---SWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSN 268 (624)
Q Consensus 192 ~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 268 (624)
+++|+..|......+.. ....++..+........+...++.-. ++...+..+...+ ..........-+......+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhcccccc
Confidence 77777666554332211 11111111111111222333332211 2222222222222 1111111111111111111
Q ss_pred cch---hhHHHHHH---HhcCChHHHHHHHhhcCCC------CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-H
Q 006955 269 IAS---WTNVIVGY---FEMGEVGSAIKVFELMTTR------DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-N 335 (624)
Q Consensus 269 ~~~---~~~l~~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~ 335 (624)
... +..+...+ ...+++++|.+.|+..... ....|+.+...+...|++++|+..|++..+. .|+ .
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 111 11111111 2246788888888877642 3345777778888899999999999998775 455 4
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHH
Q 006955 336 ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLA 412 (624)
Q Consensus 336 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 412 (624)
..|..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|+..|++.. +.+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 577777888888999999999999888764 4456778888999999999999999999876 335667888888999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cch-------HHHHHHHhh
Q 006955 413 YHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAH-------YTCVVDLLG 483 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-------~~~l~~~~~ 483 (624)
+.|++++|+..+++..+. .|+ ...+..+...+...|++++|+..|++..+ +.|+ ... ++.....+.
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHH
Confidence 999999999999999874 454 56788888899999999999999999886 3342 111 122222344
Q ss_pred ccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
..|++++|.+++++.... .|+ ...+..+...+...|++++|...++++.++.+....
T Consensus 520 ~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 520 WKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 569999999999998773 454 557888999999999999999999999998875433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-18 Score=177.33 Aligned_cols=367 Identities=10% Similarity=0.027 Sum_probs=217.7
Q ss_pred HHhCCChHHHHHHhccCCCC------ChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHH
Q 006955 155 LVREGRIVEARKLFDKMPAK------DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDA 225 (624)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 225 (624)
+.+..+|+..--+|..-.+. +..-...++..+.+.|++++|..+++..... +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 34555666555555444321 2223344455566667777777766666542 22234444444445555555
Q ss_pred HHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCcee
Q 006955 226 AISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTV 302 (624)
Q Consensus 226 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 302 (624)
|+..++.+..-+ |.+...+..+...+...|++++|...+++... .+...
T Consensus 95 A~~~l~~~l~~~----------------------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a 146 (656)
T PRK15174 95 VLQVVNKLLAVN----------------------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQI 146 (656)
T ss_pred HHHHHHHHHHhC----------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 555555554311 33333444444455555555555555554432 13344
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHh
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (624)
+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+..
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 5555555666666666666665554432 22111111122345556666666666655554333333333444556666
Q ss_pred hCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHH
Q 006955 383 CGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEK----ALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQ 454 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 454 (624)
.|++++|+..+++.. +.+...+..+...+...|++++ |+..+++..+ ..|+. ..+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 777777777766654 3345667777788888888875 7888888887 45554 577777788888888899
Q ss_pred HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 006955 455 GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 455 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
|...++++.+. .| +...+..+..+|.+.|++++|+..++++.+. .|+.. .+..+..++...|+.++|...+++
T Consensus 303 A~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 303 AIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888863 45 5666777888888889999999888888763 45543 333455667888899999999999
Q ss_pred HHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 533 VMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 533 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+++..|.+. ...+++|...+.+..+.
T Consensus 378 al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 378 YIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 888888653 23445555555555443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=172.10 Aligned_cols=227 Identities=12% Similarity=0.055 Sum_probs=159.5
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCc----chhHHHHH
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFT----TVSNAMIT 378 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 378 (624)
+..+...|...|++++|..+|+++.+.. +++..++..+...+...|++++|...+..+.+.+..+.. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4445555555555666666655555431 233445555555556666666666666655554332211 12344566
Q ss_pred HhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHH
Q 006955 379 MYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 455 (624)
.+.+.|++++|...|+++. +.+...+..+...+...|++++|.++++++.+.+..+...++..+..++...|++++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 6777788888887777765 2244567778888999999999999999998743222235677888899999999999
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 006955 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI---HNNIKVGEIAGER 532 (624)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 532 (624)
...++++.+. .|+...+..++..+.+.|++++|.++++++.+ ..|+...++.++..+.. .|+..++...+++
T Consensus 269 ~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 269 LEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 9999998873 57777778899999999999999999998887 46888888888877654 5588888888888
Q ss_pred HHc
Q 006955 533 VME 535 (624)
Q Consensus 533 ~~~ 535 (624)
+.+
T Consensus 344 ~~~ 346 (389)
T PRK11788 344 LVG 346 (389)
T ss_pred HHH
Confidence 776
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=175.68 Aligned_cols=344 Identities=11% Similarity=-0.001 Sum_probs=274.0
Q ss_pred HcCCCHHHHHHHhhhCCC------CCcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHH
Q 006955 218 VNSRRIDAAISYFKQMPE------TCEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 288 (624)
.++.+|+.-.-.|....+ .+......++..+.+.|++++|..++.... +.+......++.+....|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 344445444444444433 233355666777888899999888888876 55666677777888889999999
Q ss_pred HHHHhhcCC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006955 289 IKVFELMTT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKI 364 (624)
Q Consensus 289 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 364 (624)
...|+++.. | +...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|+.+.|...++.+...
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999998864 2 5567888888999999999999999999875 444 567778888999999999999999988776
Q ss_pred CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhH
Q 006955 365 ARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH----DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITF 439 (624)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~ 439 (624)
...+.. .+..+ ..+...|++++|...++.+... +...+..+..++...|++++|+..++++.+. .|+ ...+
T Consensus 174 ~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 544333 33223 3478899999999999886632 2334455567888999999999999999985 454 4577
Q ss_pred HHHHHHhcccChHHH----HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHH
Q 006955 440 VGVLSACSYAGLVDQ----GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGAL 513 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 513 (624)
..+...+...|++++ |...++++.+ +.| +...+..+...+...|++++|+..+++..+. .| ++..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~L 324 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 778888999999885 8999999887 456 6778999999999999999999999998874 55 46678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
..++...|++++|...++++.+..|.++..+..++.++...|++++|...+++..+...
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 89999999999999999999999998777777788899999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=178.78 Aligned_cols=118 Identities=8% Similarity=-0.056 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHcC
Q 006955 117 WNLVIGALVNCQRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDNG 190 (624)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g 190 (624)
....+......|+.++|++++.+... .+...+..+..++...|++++|.+.+++.. ..+...+..++..+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34445555566666666666666653 123345666666666666666666666643 224555556666666666
Q ss_pred ChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC
Q 006955 191 CVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE 235 (624)
Q Consensus 191 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (624)
++++|+..+++..+. +.. +..+...+...|+.++|+..++++.+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666542 222 44444455555555555555555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-16 Score=170.10 Aligned_cols=391 Identities=9% Similarity=-0.006 Sum_probs=233.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHH
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGL 217 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 217 (624)
++.-....+......|+.++|++++.+... .+...+..+...+.+.|++++|..++++..+. +...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444455566667778888888888877663 24445777788888888888888888886553 233456666777
Q ss_pred HcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHH
Q 006955 218 VNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKV 291 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (624)
...|++++|+..+++..+ | +.. +..+..++...|+.++|...++++. |.+...+..+..++...|..+.|++.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 777777777777777654 3 233 5556666677777777777776666 44444555566666666666666666
Q ss_pred HhhcCCCCce--------ehhhhhhHhh-----cCCCc---hHHHHHHHHhHHc-CCCCCHH-HHHHHHHHHcCCCCcHH
Q 006955 292 FELMTTRDVT--------VWNVMIFGLG-----ENDLG---EEGLKFFVQMKES-GPSPDNA-TFTSVLTICSDLPTLDL 353 (624)
Q Consensus 292 ~~~~~~~~~~--------~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~~ll~~~~~~~~~~~ 353 (624)
++.+.. ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+...
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a------------ 239 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA------------ 239 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH------------
Confidence 665554 111 0011111111 11112 3344444444322 1111110 00000
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC---ch-hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006955 354 GRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD---II-SWNSIICGLAYHGYAEKALELFERMRL 429 (624)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~ 429 (624)
....+..+...|++++|+..|+++...+ +. .-..+..+|...|++++|+.+|+++.+
T Consensus 240 -------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 240 -------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred -------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 0000122334466666666666655221 11 111235566677777777777777665
Q ss_pred CCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHhhhhcC----------CCCC---cchHHHHHHHhhccCChHHH
Q 006955 430 TDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYF----------LQPR---SAHYTCVVDLLGRFGLIDEA 491 (624)
Q Consensus 430 ~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A 491 (624)
. .|.. .....+..++...|++++|.++++.+..... -.|+ ...+..++..+...|+.++|
T Consensus 301 ~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 301 H--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred c--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 3 2221 2344455566677777777777777665310 0122 12344566677778888888
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+++++++.... +.++..+..+...+...|++++|+..++++++..|+++..+..++..+...|++++|..+++++.+.
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888877631 3356677777777888888888888888888888888888888888888888888888888877764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-16 Score=166.11 Aligned_cols=437 Identities=13% Similarity=0.045 Sum_probs=287.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHcCCChHHHHHHHHhcccCCh-hHHHHH--HHHHHhC
Q 006955 85 TWNSMISGYVCNGLIDEALRVFHGMPL--KDVV-SWNLVIGALVNCQRMDLAESYFKEMGARDV-ASWTIM--VNGLVRE 158 (624)
Q Consensus 85 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l--~~~~~~~ 158 (624)
+.-.-+-...++|+++.|+..|++..+ |+.. ....++..+...|+.++|..++++...|+. ..+..+ ...+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 333444456777888888888887775 4321 123677777777888888888888776533 233333 4466777
Q ss_pred CChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHH--cCCCHHHHHHHhhhC
Q 006955 159 GRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV--NSRRIDAAISYFKQM 233 (624)
Q Consensus 159 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~ 233 (624)
|++++|+++++++.+. ++..+..++..+.+.++.++|++.++++...++.....+..++. ..++..+|++.++++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888888777632 45666677777777888888888888877655443222333333 344554577777777
Q ss_pred CC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHh
Q 006955 234 PE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGL 310 (624)
Q Consensus 234 ~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 310 (624)
.+ | +...+..+..++.+.|-...|.++..+-. +..+-..... =+.+.|.+..+....++ -
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~-----l~~~~~a~~vr~a~~~~----------~ 258 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ-----LERDAAAEQVRMAVLPT----------R 258 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH-----HHHHHHHHHHhhccccc----------c
Confidence 65 3 23345566666666666666666654422 1111000000 00111111111111000 0
Q ss_pred hcCCC---chHHHHHHHHhHHc-CCCCCH-HHH----HHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhH
Q 006955 311 GENDL---GEEGLKFFVQMKES-GPSPDN-ATF----TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYA 381 (624)
Q Consensus 311 ~~~~~---~~~a~~~~~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (624)
....+ .+.|+.-++.+... +-.|.. ..| .-.+.++...++...+...++.+...+.+....+-.++.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 01112 34455555555442 222322 222 2344567788889999999999988888777778888999999
Q ss_pred hhCCHHHHHHHhccCCCC---------CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCh---hh
Q 006955 382 RCGNIQSALLEFSSVPIH---------DIISWNSIICGLAYHGYAEKALELFERMRLTDF-----------KPDD---IT 438 (624)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~---~~ 438 (624)
..+++++|+.++..+..+ +......|.-+|...+++++|..+++.+.+.-. .||+ ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 999999999999887521 222346788889999999999999999987311 2333 23
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGA 516 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 516 (624)
+..++..+.-.|+..+|++.++++.. ..| |......+.+.+...|.+.+|.+.++.... +.|+ ..+....+.+
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHH
Confidence 44556678889999999999999987 346 899999999999999999999999988776 4564 5677788888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
+...|++.+|..+.+.+.+..|+++.+
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 899999999999999999999977744
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-15 Score=155.75 Aligned_cols=419 Identities=10% Similarity=0.027 Sum_probs=304.2
Q ss_pred HHHHHHHhCCChHHHHHHhccCCCCChh---HHHHHHHHHHHcCChhHHHHHHHHcccCCccc-HHHH--HHHHHcCCCH
Q 006955 150 IMVNGLVREGRIVEARKLFDKMPAKDVQ---AWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS-WKQL--INGLVNSRRI 223 (624)
Q Consensus 150 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~ 223 (624)
.-+-...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++...++... +..+ ...+...|++
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 3344567999999999999999854333 23388888999999999999999999765443 3333 4578888999
Q ss_pred HHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh--cCChHHHHHHHhhcCCC
Q 006955 224 DAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE--MGEVGSAIKVFELMTTR 298 (624)
Q Consensus 224 ~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 298 (624)
++|+++++++.+ | ++..+..++..+...++.++|.+.++.+.+.++.....+..+|.. .++..+|+..++++...
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999986 3 345666777888999999999999999995554443334444444 55665699999988753
Q ss_pred ---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHH------HHHHHHHH-----cCCCCcHHHHHHH---HHH
Q 006955 299 ---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNAT------FTSVLTIC-----SDLPTLDLGRQIH---AQA 361 (624)
Q Consensus 299 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~ll~~~-----~~~~~~~~a~~~~---~~~ 361 (624)
+...+..+..++.+.|-...|.++..+-... ..|.... ....++.- ....++..+.+.+ +.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 5566778888899999999999877653211 1111111 11111111 0122333333333 333
Q ss_pred HHh-CC-CCCcchh-HH---HHHHhHhhCCHHHHHHHhccCCCC----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 362 IKI-AR-NQFTTVS-NA---MITMYARCGNIQSALLEFSSVPIH----DIISWNSIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 362 ~~~-~~-~~~~~~~-~~---l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
... +. |+....+ .+ .+-++...|+..++++.|+.+..+ ...+-..+.++|...+.+++|+.+++++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 332 21 2222222 22 345677889999999999999832 22355668899999999999999999997642
Q ss_pred C-----CCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC----------CCCCc---chHHHHHHHhhccCChHHHHH
Q 006955 432 F-----KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF----------LQPRS---AHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 432 ~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~~---~~~~~l~~~~~~~g~~~~A~~ 493 (624)
- .++......|..++...+++++|..+++.+.+... -.||+ ..+..++..+.-.|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 12223356788899999999999999999987321 01332 234456778889999999999
Q ss_pred HHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 494 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++++.... +-|...+..+...+...|.+.+|+..++.+..+.|.+..+...++.++...|+|.+|..+.+...+.
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998742 3478899999999999999999999999999999999999999999999999999999988777554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-15 Score=146.22 Aligned_cols=564 Identities=13% Similarity=0.058 Sum_probs=379.3
Q ss_pred CCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHHh
Q 006955 3 NARIQEAQNLFDKMPQ---RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVFD 76 (624)
Q Consensus 3 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 76 (624)
+|++++|..++.++.+ .++..|.+|...|-+.|+.+++...+-.+- +.|..-|..+.....+.|+++.|.-+|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4999999999999886 355789999999999999999988765543 5677889999999999999999999999
Q ss_pred cCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCc----c----cHHHHHHHHHcCCChHHHHHHHHhccc---
Q 006955 77 GME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDV----V----SWNLVIGALVNCQRMDLAESYFKEMGA--- 142 (624)
Q Consensus 77 ~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 142 (624)
+.. +++...+---...|-+.|+...|...|.++.+-++ . .--.++..+...++.+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 877 44555555667788999999999999999987322 1 122345566677777999988887765
Q ss_pred --CChhHHHHHHHHHHhCCChHHHHHHhccCCC-------------------------------CChhH-HHHHHHHHHH
Q 006955 143 --RDVASWTIMVNGLVREGRIVEARKLFDKMPA-------------------------------KDVQA-WNLMIAGYLD 188 (624)
Q Consensus 143 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------~~~~~-~~~l~~~~~~ 188 (624)
.+...++.++..+.+...++.+......+.. .+..+ +..+.....+
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 2556788888888888888887776544432 12223 2223333344
Q ss_pred cCChhHHHHHHHHccc----CCcccHHHHHHHHHcCCCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHH
Q 006955 189 NGCVGVAEDLFQKMHD----RDLTSWKQLINGLVNSRRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSY 260 (624)
Q Consensus 189 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~ 260 (624)
.++..+++..+..-.. .++..|..+..+|...|.+.+|+.+|..+.. .+...|..+..++...|..+.|.+.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 4555555544433222 2445688899999999999999999999986 3455899999999999999999999
Q ss_pred HhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCce-----eh-------hhhhhHhhcCCCchHHHHHHHH
Q 006955 261 LEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT-----VW-------NVMIFGLGENDLGEEGLKFFVQ 325 (624)
Q Consensus 261 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-------~~l~~~~~~~~~~~~a~~~~~~ 325 (624)
|+.+. |.+..+...|...+.+.|+.++|.+.+..+..+|.. .| ......+.+.|+.++-+.+-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99998 666667778888999999999999999998766522 11 1233446677777765555444
Q ss_pred hHHcC-----CCC-----------------CHHHHHHHHHHHcCCCCcHHHHHHHH------HHHHhCCCCCc--chhHH
Q 006955 326 MKESG-----PSP-----------------DNATFTSVLTICSDLPTLDLGRQIHA------QAIKIARNQFT--TVSNA 375 (624)
Q Consensus 326 m~~~~-----~~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~--~~~~~ 375 (624)
|.... +-| ...+...+..+-.+.++......... .....|...+. ..+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 43221 111 11222222333333333222111111 11112222222 23456
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCC-----Cc----hhHHHHHHHHHHcCChHHHHHHHHHHHHC-CC--CCCh-hhHHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIH-----DI----ISWNSIICGLAYHGYAEKALELFERMRLT-DF--KPDD-ITFVGV 442 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~--~p~~-~~~~~l 442 (624)
++...++.+++++|+.+...+... +. ..-...+.+....+++..|...++.|... +. .|.. ..|+..
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 778889999999999988776521 21 12344566777899999999999998864 22 2222 345555
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH-HH-
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA-CR- 518 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~- 518 (624)
++...+.|+-.--.+++..+... .|+ +..+..........+.+..|+..+-+... ..|+....+..+.. +.
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~---~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVK---NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHH
Confidence 55566665554444444444332 232 33333444556678899999998877665 46764444444332 21
Q ss_pred ---------hcCChHHHHHHHHHHHccCCC--CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 519 ---------IHNNIKVGEIAGERVMELEPN--NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 519 ---------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++-..-++..++.+..++... ...+++.++++|...|-..-|.+++++.++-.
T Consensus 787 ~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 787 LALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 222334566666666665543 57889999999999999999999999887653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-13 Score=131.95 Aligned_cols=363 Identities=14% Similarity=0.163 Sum_probs=273.8
Q ss_pred cHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhc
Q 006955 209 SWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEM 282 (624)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 282 (624)
+|..-.+.|.+.+.++-|..+|....+ | +...|......--..|..++...++.++. +.....|......+...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 456666667777777777777776665 2 33456666666666778888888887777 44455566667777778
Q ss_pred CChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006955 283 GEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359 (624)
Q Consensus 283 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 359 (624)
|++..|..++..+-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..-.-.++.++|.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 8888888888777542 4556777777788888888888888877664 6777666665555666788888888888
Q ss_pred HHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 006955 360 QAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436 (624)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 436 (624)
..++. ++.-...|-.+...+-+.++++.|.+.|..-. +..+..|-.+...--+.|.+-+|..++++.+-.+ +-|.
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~ 753 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNA 753 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcc
Confidence 77764 34445566777788888888888888887655 3455677777777777888888999998887753 4455
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
..|...+..-.+.|+.+.|..++.++.+. .+.+...|..-|....+.++-......+++.. .|+.+...+...
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~l 826 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKL 826 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHH
Confidence 68888888888899999999888888876 33366677778888888787666666666544 566677778888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEc
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQIN 584 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 584 (624)
+....+++.|...|+++++..|++..+|..+...+.++|.-++-.+++.+.... +|+-|..|+-++
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 888999999999999999999999999999999999999999999999877654 466666776554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-16 Score=143.07 Aligned_cols=454 Identities=13% Similarity=0.070 Sum_probs=295.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHhccCCC----CCccc-HHHHHHHHHcCCChHHHHHHHHhccc--CC--h----hHHHHH
Q 006955 85 TWNSMISGYVCNGLIDEALRVFHGMPL----KDVVS-WNLVIGALVNCQRMDLAESYFKEMGA--RD--V----ASWTIM 151 (624)
Q Consensus 85 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~----~~~~~l 151 (624)
+...|..-|..+....+|+..|+-+.+ |+.-. -..+...+.+.+++.+|+++|+.... |+ . .+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 344456667777888899998887765 44322 12234556778889999999887764 32 2 233444
Q ss_pred HHHHHhCCChHHHHHHhccCCC--CChhHHHHHHHHHHHcCChhHHHHHHHHcccC----Cc--------ccHHHHHHHH
Q 006955 152 VNGLVREGRIVEARKLFDKMPA--KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR----DL--------TSWKQLINGL 217 (624)
Q Consensus 152 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--------~~~~~l~~~~ 217 (624)
--.+.+.|.+++|+..|+...+ ||..+-..|+-++.--|+-++..+.|.+|..- |. .+-..|+.--
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 4467789999999999998873 56666555666666778999999999998641 00 0122222222
Q ss_pred HcCC-----------CHHHHHHHhhhCCC----CCcc-hHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh
Q 006955 218 VNSR-----------RIDAAISYFKQMPE----TCEK-TWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE 281 (624)
Q Consensus 218 ~~~~-----------~~~~A~~~~~~~~~----~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 281 (624)
.+.. +.++++-.-.++.. |+.. .+.-.+..+-.....+.|..+ -..-...|.+
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl-----------ei~ka~~~lk 431 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL-----------EINKAGELLK 431 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-----------hhhHHHHHHh
Confidence 2111 12222222222222 2211 011111111111111111111 1111234667
Q ss_pred cCChHHHHHHHhhcCCCCceehhhhh----h-Hhhc-CCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHH
Q 006955 282 MGEVGSAIKVFELMTTRDVTVWNVMI----F-GLGE-NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGR 355 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~~~~~~~~l~----~-~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 355 (624)
.|+++.|+++++-..+.|..+-.+.. . -|.+ -.++..|..+-+...... +-+....+.--+.....|++++|.
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence 78888888777777665443322211 1 1222 234555555554433221 222222222223334567888888
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006955 356 QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDF 432 (624)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 432 (624)
..+++.+...-......|| +.-.+...|++++|++.|-++. ..+....-.+...|-...++..|++++-+.... +
T Consensus 511 ~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 8888877765544455555 3445678899999999987765 556777777888898999999999999887763 4
Q ss_pred CCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHH
Q 006955 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA 512 (624)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (624)
+.|+..+..|...|-+.|+-..|.+.+-.--+- ++-+..+...|..-|....-+++|+..|++..- +.|+..-|..
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 445578888899999999999999987765542 333899999999999999999999999998654 7999999999
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 513 LLGAC-RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 513 l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
++..| .+.|++.+|..+|+...+..|.|...+..|.+.+...|.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99887 568999999999999999999999999999999888775
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-13 Score=133.05 Aligned_cols=522 Identities=14% Similarity=0.104 Sum_probs=350.0
Q ss_pred HHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCChhhHHHHHhcC---CCCCchhHHHHHHHHHhCCChhHHH
Q 006955 30 GYFKNGFLDNAMCLFNQMPE---RDMFTYNTVIAGLMQSDNVQGAKEVFDGM---EVRDVVTWNSMISGYVCNGLIDEAL 103 (624)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 103 (624)
.+...|++++|..++.++++ .....|..|...|-..|+.+.+...+-.. .+.|...|..+.......|++++|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 34556999999999999983 45688999999999999999998765433 2667789999999999999999999
Q ss_pred HHhccCCCCCc---ccHHHHHHHHHcCCChHHHHHHHHhcccCCh----hHH----HHHHHHHHhCCChHHHHHHhccCC
Q 006955 104 RVFHGMPLKDV---VSWNLVIGALVNCQRMDLAESYFKEMGARDV----ASW----TIMVNGLVREGRIVEARKLFDKMP 172 (624)
Q Consensus 104 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~----~~l~~~~~~~g~~~~a~~~~~~~~ 172 (624)
-+|.+..+-++ ...-.-...|-+.|+...|..-+.++...++ .-+ -..++.+...++-+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999987333 2334445677889999999999999987433 222 334566777788899998887776
Q ss_pred C-----CChhHHHHHHHHHHHcCChhHHHHHHHHccc----C----------------------CcccHH----HHHHHH
Q 006955 173 A-----KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD----R----------------------DLTSWK----QLINGL 217 (624)
Q Consensus 173 ~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~----~l~~~~ 217 (624)
. -+...++.++..+.+...++.|...+..+.. + +..+|. -+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 3 2556788999999999999999988877754 1 111111 122233
Q ss_pred HcC--CCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHH
Q 006955 218 VNS--RRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGS 287 (624)
Q Consensus 218 ~~~--~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 287 (624)
... +...+++.-+..-.. -+...|.-+..++...|.+.+|..++..+. -.+..+|-.+..+|...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 333 333344333322222 234468888999999999999999999998 3446689999999999999999
Q ss_pred HHHHHhhcCCCCce---ehhhhhhHhhcCCCchHHHHHHHHhH--------HcCCCCCHHHHHHHHHHHcCCCCcHHHHH
Q 006955 288 AIKVFELMTTRDVT---VWNVMIFGLGENDLGEEGLKFFVQMK--------ESGPSPDNATFTSVLTICSDLPTLDLGRQ 356 (624)
Q Consensus 288 A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 356 (624)
|.+.|+.+...++. .--.|...+.+.|++++|++.+..+. ..+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999998765443 44456667889999999999999864 22345555555566667777888776554
Q ss_pred HHHHHHHhC----------------------CCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--------CCCc----h
Q 006955 357 IHAQAIKIA----------------------RNQFTTVSNAMITMYARCGNIQSALLEFSSVP--------IHDI----I 402 (624)
Q Consensus 357 ~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~----~ 402 (624)
+...|+... .+........++.+-.+.++......-...-. .-++ .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 444443311 11111112223333333333332222221110 1111 2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCh-h-hH-HHHHHHhcccChHHHHHHHHHHhhhhcCCC--C-Ccch
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFK--PDD-I-TF-VGVLSACSYAGLVDQGRYYFDCMKNKYFLQ--P-RSAH 474 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~-~-~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~ 474 (624)
.+.-++.++++.+++++|+.+...+...... ++. . .+ ...+.++...+++..|...++.+....+.. | -...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3344667888999999999999988875322 222 1 22 344557788899999999999998763322 2 2445
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL--GACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
|+...+...+.|+-.--.+.+..... ..|+......++ .-....+.+.-|...+-++...+|.+|.+-.+++-++.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 55455555555554444444444332 233332222233 33467889999999999999999988887777776655
Q ss_pred h
Q 006955 553 S 553 (624)
Q Consensus 553 ~ 553 (624)
+
T Consensus 786 h 786 (895)
T KOG2076|consen 786 H 786 (895)
T ss_pred H
Confidence 4
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=149.71 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=117.5
Q ss_pred hhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 307 IFGLGENDLGEEGLKFFVQMKESGPSPDNATFTS-VLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455666777777777755443322344444433 333445566777777777777665433 45556666666 68888
Q ss_pred HHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 386 IQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTD-FKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 386 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
+++|..+++... .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888877654 4566778888889999999999999999987643 3456677888888999999999999999999
Q ss_pred hhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 463 KNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 463 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
.+. .| |+.....++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...++++.+..|.|+
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 984 57 68889999999999999999999998877643 55777889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.....++.++...|+.++|.++..+...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999877643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-11 Score=119.17 Aligned_cols=472 Identities=11% Similarity=0.086 Sum_probs=366.8
Q ss_pred cCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChHHHHHHH
Q 006955 64 QSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMDLAESYF 137 (624)
Q Consensus 64 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (624)
...+.++|+-++.+.. +.... |..++.+..-|+.|.+++++.++ .++..|.+-...--.+|+.+...+++
T Consensus 388 elE~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred hccChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445566666666654 22333 34455666778888888888875 47778888888888899999999998
Q ss_pred Hhccc--------CChhHHHHHHHHHHhCCChHHHHHHhccCCC------CChhHHHHHHHHHHHcCChhHHHHHHHHcc
Q 006955 138 KEMGA--------RDVASWTIMVNGLVREGRIVEARKLFDKMPA------KDVQAWNLMIAGYLDNGCVGVAEDLFQKMH 203 (624)
Q Consensus 138 ~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 203 (624)
.+... -+...|..=...|-..|..-.+..+...+.. .-..+|..-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 87753 2556666666777777777777777665552 234688888999999999999999998887
Q ss_pred cC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhH
Q 006955 204 DR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTN 274 (624)
Q Consensus 204 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ 274 (624)
+- +...|...+..--..|..+.-..+|++... | .+..|..........|+...|..++..+. +.+..+|-+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 73 334577777666778999999999998876 3 33356666677788899999999998887 666778999
Q ss_pred HHHHHHhcCChHHHHHHHhhcCC--CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCCCc
Q 006955 275 VIVGYFEMGEVGSAIKVFELMTT--RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLPTL 351 (624)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 351 (624)
-+..-.....++.|..+|.+... ++...|.--+..---.+..++|++++++..+. -|+- ..|..+...+.+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 99999999999999999998764 46667776666667788999999999888775 6664 4556666677788888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMR 428 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 428 (624)
+.|...|..-.+ .+|..+..+-.|...--+.|.+-+|..++++.. +.+...|-..|..-.+.|+.+.|..++.+..
T Consensus 702 e~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887765444 246677788888888889999999999999876 4477899999999999999999999999988
Q ss_pred HCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-H
Q 006955 429 LTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-P 507 (624)
Q Consensus 429 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~ 507 (624)
+. ++.+...|..-|...-+.++-......+++ ..-|+...-.+...+....++++|.+.|.+... ..|| .
T Consensus 781 Qe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~G 851 (913)
T KOG0495|consen 781 QE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNG 851 (913)
T ss_pred Hh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccc
Confidence 75 555667888878777777775555554443 345777788888888899999999999999987 4454 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
.+|..+...+..+|.-+.-.+++.+.....|.....+....+--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 68888999999999999999999999999998887777766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-14 Score=130.54 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=64.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----CCc-chHHHHHHHHHcCCChhhHHHHHhcCC--CC------CchhHHHHHHHH
Q 006955 27 MIRGYFKNGFLDNAMCLFNQMPE----RDM-FTYNTVIAGLMQSDNVQGAKEVFDGME--VR------DVVTWNSMISGY 93 (624)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~------~~~~~~~l~~~~ 93 (624)
|.+.|..+....+|+..|+-+.+ |+. ..--.+.+.+.+...+..|++.|+... .| .+.+.+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44455555666667766666552 221 111122334555666667776665443 12 123455555566
Q ss_pred HhCCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCChHHHHHHHHhcc
Q 006955 94 VCNGLIDEALRVFHGMPL--KDVVSWNLVIGALVNCQRMDLAESYFKEMG 141 (624)
Q Consensus 94 ~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (624)
.+.|+++.|+..|+...+ |+..+-..|+-++..-|+.++..+.|..|.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 677777777777776654 665554445555555667777777776665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-13 Score=122.81 Aligned_cols=214 Identities=16% Similarity=0.155 Sum_probs=164.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
-.|+.-.+..-|+.+++....++. .|-.+..+|....+.++....|++.. +.++.+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 346666677777766665443332 24445666777777777777777665 44667787777888888889999999
Q ss_pred HHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 424 FERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 424 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
|++... +.|+. ..|.-+.-+..+.+.++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 999887 56654 45666666667788999999999999986 444788999999999999999999999998776
Q ss_pred CCcC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 503 IEVS---------PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 503 ~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+.|+ +.+...++..- -.+|+..|+.+++++++++|.....|..|+....++|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3443 33333333322 34999999999999999999999999999999999999999999998754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-12 Score=116.53 Aligned_cols=378 Identities=14% Similarity=0.125 Sum_probs=235.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHcccCCccc-------HHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHH
Q 006955 176 VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS-------WKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSII 245 (624)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll 245 (624)
+.+-+.|+.. ...|.++++.-+|+.|...++.+ .--|+..|-.++-+-.-++.|-.|.. .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 3445555543 45678888888888888765542 22222233333333333445555543 122222
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC----CceehhhhhhHhhcCCCchHHHH
Q 006955 246 SVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR----DVTVWNVMIFGLGENDLGEEGLK 321 (624)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~ 321 (624)
+.|++.+ ++-+..+....++..||.+.|+--..+.|..++++.... +..+||.+|.+-. +..-.+
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHH
Confidence 2333322 566666788888888888888888888888888877653 4556666665532 223367
Q ss_pred HHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHH----HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHH-HHHHhccC
Q 006955 322 FFVQMKESGPSPDNATFTSVLTICSDLPTLDLG----RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS-ALLEFSSV 396 (624)
Q Consensus 322 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 396 (624)
++.+|....++||..||++++.+..+.|+++.+ .+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 888888888899999999999988888876654 4667788888999999888888888888877754 33333322
Q ss_pred C------------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCh---hhHHHHHHHhcccChHHHHHH
Q 006955 397 P------------IHDIISWNSIICGLAYHGYAEKALELFERMRLT----DFKPDD---ITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 397 ~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~---~~~~~ll~~~~~~g~~~~a~~ 457 (624)
. +.|...|...+..|.+..+.+-|.++-.-+... -+.|+. .-|..+....++....+.-..
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223445666677777777777777765554431 133332 234455566677777777777
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC----------------
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN---------------- 521 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------- 521 (624)
.++.+.-.. +-|+..+...+.++..-.|.++-.-+++..++..|..-+.....-++...+...
T Consensus 420 ~Y~~lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 420 WYEDLVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHhccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 777776542 456777777788887788888888888877777664333333322222222211
Q ss_pred ----ChHHHHH-HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 522 ----NIKVGEI-AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 522 ----~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.++.+ .-+++. .....+......+-.+.+.|+.++|-+++.-+.+.+
T Consensus 499 k~aad~~e~~e~~~~R~r-~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQR-AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHHHhhHHHHH-hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1111111 111222 122245667778888889999999999988886555
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-11 Score=112.67 Aligned_cols=429 Identities=14% Similarity=0.099 Sum_probs=247.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCC----cchHHHHHHH--HHcCCChhhH-HHHHhcCC---CCCchhHHHHHHH
Q 006955 23 TWNVMIRGYFKNGFLDNAMCLFNQMPERD----MFTYNTVIAG--LMQSDNVQGA-KEVFDGME---VRDVVTWNSMISG 92 (624)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~---~~~~~~~~~l~~~ 92 (624)
+=+.|++.. .+|.+.++--+|+.|.+.+ +..-..|.+. |....++.-| .+.|-.|. +....+|
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 444455443 5677888888888888432 2223333332 2233333222 23343444 2222222
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc----CChhHHHHHHHHHHhCCChHHHHHHh
Q 006955 93 YVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA----RDVASWTIMVNGLVREGRIVEARKLF 168 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~ 168 (624)
+.|...+ ++-+.....+.++..+|.++++.-..++|.+++++... -+..+||.+|.+-.-..+ .+++
T Consensus 191 --K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred --ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 2333332 45555556778899999999999999999999988764 377888888876544333 4444
Q ss_pred ccCC----CCChhHHHHHHHHHHHcCChhHHH----HHHHHccc----CCcccHHHHHHHHHcCCCHHH-HHHHhhhCCC
Q 006955 169 DKMP----AKDVQAWNLMIAGYLDNGCVGVAE----DLFQKMHD----RDLTSWKQLINGLVNSRRIDA-AISYFKQMPE 235 (624)
Q Consensus 169 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~ 235 (624)
.+|. .||..|+|+++.+..+.|+++.|. +++.+|++ +...+|..+|..+.+-++..+ |..++.++..
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 4443 689999999999999999887654 45555554 344467777777666665533 3333333321
Q ss_pred ------------CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceeh
Q 006955 236 ------------TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVW 303 (624)
Q Consensus 236 ------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 303 (624)
.|..-|...++.|.+..+.+-|.++..-+...+. ++..-..+ ....-|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N---------------~~~ig~~~-----~~~fYy 401 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN---------------WKFIGPDQ-----HRNFYY 401 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---------------hhhcChHH-----HHHHHH
Confidence 1333566666666666666666665433221100 00000000 012335
Q ss_pred hhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
..+....|+....+..+..|+.|.-.-+-|+..+...++++....+.++...++|.++...|..........++..+++.
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 56667778888889999999999888888999999999999999999999999999998887654443333333333322
Q ss_pred CCHHHHHHHhccCCCCCch---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVPIHDII---SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
. ..|+.. -+.....-|+ ..-.+.....-.+|++. .-.....+.++..+.+.|..++|.+++.
T Consensus 482 k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~ 546 (625)
T KOG4422|consen 482 K------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLG 546 (625)
T ss_pred C------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHH
Confidence 1 011111 1111111111 01112222233445543 3333445555556677777777777777
Q ss_pred HhhhhcCCCCCcchHH---HHHHHhhccCChHHHHHHHHHcccCC
Q 006955 461 CMKNKYFLQPRSAHYT---CVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
.+.+.+.-.|.....+ -+++.-.+.++...|..+++-|...+
T Consensus 547 l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 547 LFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 7755444444444444 34444455666777777776665543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-11 Score=113.93 Aligned_cols=514 Identities=14% Similarity=0.129 Sum_probs=308.3
Q ss_pred HcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHcCCChHHHHHH
Q 006955 63 MQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--KDVV-SWNLVIGALVNCQRMDLAESY 136 (624)
Q Consensus 63 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~ 136 (624)
-.++++..|.++|+... .++...|-..+.+-.++...+.|..++++... |-+. .|--.+-.--..|++..|.++
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34556666666666655 34555555666666666666666666666653 3332 222222223345666677777
Q ss_pred HHhccc--CChhHHHHHHHHHHhCCChHHHHHHhccCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC--Cc---
Q 006955 137 FKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDKMP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR--DL--- 207 (624)
Q Consensus 137 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--- 207 (624)
|++-.+ |+...|++.|+.-.+-+.++.|..+++... .|++.+|--....-.++|++..|..+|+...+. |.
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 666653 666667777766666666777777666654 566666666666666666666666666665541 11
Q ss_pred -ccHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCC
Q 006955 208 -TSWKQLINGLVNSRRIDAAISYFKQMPE--TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGE 284 (624)
Q Consensus 208 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (624)
..+.++...=.++..++.|.-+|+-..+ |...+ ...|..+...--+-|+
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra----------------------------eeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA----------------------------EELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH----------------------------HHHHHHHHHHHHHhcc
Confidence 1222222222334444444444443332 11110 1122222222222233
Q ss_pred hH---HHHH-----HHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-------HHHHHHHHHH-
Q 006955 285 VG---SAIK-----VFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN-------ATFTSVLTIC- 345 (624)
Q Consensus 285 ~~---~A~~-----~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~- 345 (624)
.. +++- -++..... |-.+|-..+..-...|+.+...++|++.... ++|-. ..|.-+=-+|
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 22 2211 12222233 3344555555556678888888888887764 45532 1222222222
Q ss_pred --cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHh----HhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCCh
Q 006955 346 --SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMY----ARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 346 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 417 (624)
....+++.+.++++..++ -+|....++..+=-+| .++.++..|.+++.... -|...+|...|..-.+.+++
T Consensus 375 eEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF 453 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH
Confidence 356788889999988888 4666677776554444 46789999999998876 46667788888888899999
Q ss_pred HHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHH
Q 006955 418 EKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
+.+..++++..+ ..| |..+|......-...|+.+.|..+|.-+.....+.-....|...|+.-...|.++.|..+++
T Consensus 454 DRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 454 DRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 999999999998 455 45788888877788899999999999988764333345667788888889999999999999
Q ss_pred HcccCCCCcCHHHHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHcc----CCCCC--chHHHHHHHHHhc
Q 006955 497 EIRADGIEVSPTVWGALLGACR-----IHN-----------NIKVGEIAGERVMEL----EPNNS--GVYLILTEMYLSC 554 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~ 554 (624)
++++. .+...+|-++..--. ..| +...|..+|+++... .|... ..+..+-+.-...
T Consensus 532 rlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~ 609 (677)
T KOG1915|consen 532 RLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETF 609 (677)
T ss_pred HHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 99873 555557777664322 334 567888899988763 23111 1233333334455
Q ss_pred CChHHHHHHHHHHHH----C-CCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHH
Q 006955 555 GRREDAKRIFAQMKE----N-GVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHT 612 (624)
Q Consensus 555 g~~~~A~~~~~~m~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (624)
|...+...+-..|.+ . .+....|+ .+.++.+..++-.+-+.|.-.++...-..|.+
T Consensus 610 G~~~d~~~V~s~mPk~vKKrr~~~~edG~--~~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~ 670 (677)
T KOG1915|consen 610 GTEGDVERVQSKMPKKVKKRRKIQREDGD--TEYEEYFDYIFPEDASATKNLKILEAAKKWKK 670 (677)
T ss_pred CchhhHHHHHHhccHHHHhhhhhhcccCc--hhHHHHHHhcCccccccCcchHHHHHHHHHHH
Confidence 655555555555532 1 12233441 22334445556666677777777665555444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-12 Score=117.83 Aligned_cols=326 Identities=11% Similarity=0.007 Sum_probs=232.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCcee-hhhhhhHhhcCC
Q 006955 236 TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTV-WNVMIFGLGEND 314 (624)
Q Consensus 236 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~ 314 (624)
.|+..+....-.+.+.|....|...|......-+..|.+-+....-..+.+.+..+...+...+.-. --.+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 3433344444455566777777777766664445555554444333344444433333333221110 112334555566
Q ss_pred CchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC--CCcchhHHHHHHhHhhCCHH-HHHH
Q 006955 315 LGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN--QFTTVSNAMITMYARCGNIQ-SALL 391 (624)
Q Consensus 315 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~-~A~~ 391 (624)
+.+++..-.......|.+-+...-+....+.-...++++|..+|+++.+..+- .|..+|+-++-.-....++. -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 77888888877777775555444444444556778899999999999887321 24555655443322222221 1222
Q ss_pred HhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC
Q 006955 392 EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470 (624)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 470 (624)
++ .+.+-.+.|..++.+-|+-.++.++|...|++..+ +.|.. ..|+.+..-|....+...|++-++.+.+ +.|
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p 395 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INP 395 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCc
Confidence 22 22233566788888999999999999999999988 56665 5777777889999999999999999987 667
Q ss_pred -CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 471 -RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 471 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
|-..|-.|..+|.-.+...-|+-.|++... ++| |+..|.+|..+|.+.++.++|++.|.++......+..++..|+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 889999999999999999999999999988 455 7899999999999999999999999999998887889999999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 006955 549 EMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 549 ~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+.|.+.++.++|...+++-.+
T Consensus 474 kLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999987755
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=129.12 Aligned_cols=277 Identities=11% Similarity=0.029 Sum_probs=192.7
Q ss_pred cCChHHHHHHHhhcCCC--Ccee-hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHH--HHHHHHcCCCCcHHHHH
Q 006955 282 MGEVGSAIKVFELMTTR--DVTV-WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT--SVLTICSDLPTLDLGRQ 356 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 356 (624)
.|+++.|.+.+...... ++.. |........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677776666655432 1222 222233346777777888887777654 45543332 22456667778888888
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC---c--------hhHHHHHHHHHHcCChHHHHHHHH
Q 006955 357 IHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD---I--------ISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776665 4456666777888888888888887777666221 1 123333444444556667777777
Q ss_pred HHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc
Q 006955 426 RMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV 505 (624)
Q Consensus 426 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (624)
.+.+. .+.+......+..++...|+.++|.+++++..+. +|++... ++.+....++.+++.+.+++..+.. +-
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 76543 3456677888888999999999999999888763 3555322 2334445689999999999988642 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
|+..+..+...|...|++++|...|+++.+..| +...+..|+.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566788888999999999999999999999999 667788999999999999999999987654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-11 Score=114.39 Aligned_cols=341 Identities=13% Similarity=0.148 Sum_probs=228.2
Q ss_pred HHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhh---HHHHHHHhcCChHHHHHHH
Q 006955 216 GLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWT---NVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 216 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 292 (624)
.+.+.|....|++.|......-+..|.+-+....-..+.+.+..+...+ +.+ ..|. -+..++-.....+++..-.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-~~~-~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-PSD-MHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-ccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555444444444443333333333322222111 111 1111 1333444445555555544
Q ss_pred hhcCCC----CceehhhhhhHhhcCCCchHHHHHHHHhHHcCC-C-CCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 006955 293 ELMTTR----DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGP-S-PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR 366 (624)
Q Consensus 293 ~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 366 (624)
...... +...-+....+...+.++++|+.+|+++.+... + -|..+|..++-.-..... ..++.+-.-.--
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls~LA~~v~~id 326 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LSYLAQNVSNID 326 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HHHHHHHHHHhc
Confidence 444332 111122233345566788888888888887631 1 234566666544322211 222222222223
Q ss_pred CCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 006955 367 NQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGV 442 (624)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 442 (624)
+-.+.++..+.+.|.-.++.++|...|++.. +.....|+.|..-|....+...|.+-++...+ +.| |-..|-.+
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGL 404 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGL 404 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhh
Confidence 4455667778888888999999999999877 33456899999999999999999999999988 445 55799999
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN 521 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (624)
.++|.-.+...=|.-+|+++.+ +.| |+..|..|.++|.+.++.++|++.|.+....| ..+...+..|...|-..+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELK 480 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHH
Confidence 9999999999999999999887 567 89999999999999999999999999998766 446678899999999999
Q ss_pred ChHHHHHHHHHHHc-------cCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 522 NIKVGEIAGERVME-------LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 522 ~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+.++|...+++.++ ..|....+...|+.-+.+.+++++|..+.....
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 99999999999887 334444556668888889999999988765443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-10 Score=108.41 Aligned_cols=453 Identities=12% Similarity=0.103 Sum_probs=295.5
Q ss_pred chhHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChHHHHHHHHhccc--CCh-hHHHHHHHHHH
Q 006955 83 VVTWNSMISGYVCNGLIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMDLAESYFKEMGA--RDV-ASWTIMVNGLV 156 (624)
Q Consensus 83 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~ 156 (624)
...|--...--..++++..|..+|++.+. .+...|...+..-.+++++..|.-++++.+. |-+ ..|--.+.+--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34444444444566777788888887775 4555666667777778888888888877765 322 23344444555
Q ss_pred hCCChHHHHHHhccCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHccc--CCcccHHHHHHHHHcCCCHHHHHHHhhh
Q 006955 157 REGRIVEARKLFDKMP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD--RDLTSWKQLINGLVNSRRIDAAISYFKQ 232 (624)
Q Consensus 157 ~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (624)
..|++..|.++|+... +|+..+|.+.|..-.+-..++.|..++++..- +++.+|--....=.+.|++..|..++..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6778888888887776 57778888888887777888888888877652 4444444444444455555555555444
Q ss_pred CCC--CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCC----C-Cceehhh
Q 006955 233 MPE--TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTT----R-DVTVWNV 305 (624)
Q Consensus 233 ~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~ 305 (624)
..+ .|.. .+...+.+....-.++..++.|.-+|+-..+ . ....|..
T Consensus 233 Aie~~~~d~---------------------------~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~ 285 (677)
T KOG1915|consen 233 AIEFLGDDE---------------------------EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKK 285 (677)
T ss_pred HHHHhhhHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 332 1111 1111233333333445556666666654432 1 1223333
Q ss_pred hhhHhhcCCCchHHHHH--------HHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc------
Q 006955 306 MIFGLGENDLGEEGLKF--------FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT------ 371 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------ 371 (624)
....=-+-|+.....+. |+.+.+.+ +.|-.++--.+......|+.+...+++..++..-.+.+..
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHH
Confidence 33322233443333222 33344432 4555677777788888899999999999988754333221
Q ss_pred hhH---HHHHHhHhhCCHHHHHHHhccCC---CCCchhHHH----HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 006955 372 VSN---AMITMYARCGNIQSALLEFSSVP---IHDIISWNS----IICGLAYHGYAEKALELFERMRLTDFKPDDITFVG 441 (624)
Q Consensus 372 ~~~---~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 441 (624)
+|- -.+-.-....+.+.+.++++... +....||.. ....-.++.+...|.+++.... |.-|...+|..
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~ 442 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHH
Confidence 111 11222234678888888887654 444444444 4444567889999999998875 57899999999
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC-CCcCHHHHHHHHHHHHh
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEVSPTVWGALLGACRI 519 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~ 519 (624)
.|..-.+.+++|.+..++++..+ ..| +..+|......-...|+.+.|..+|.-+++.. +......|.+.|.--..
T Consensus 443 YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 99999999999999999999997 567 78889999998899999999999999988532 11123466666766678
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHH
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYL-----SCG-----------RREDAKRIFAQMKE 569 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 569 (624)
.|.++.|..+++++++..+ ...++...+..-. ..| ....|..+|++...
T Consensus 520 ~~E~ekaR~LYerlL~rt~-h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQ-HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchHHHHHHHHHHHHHhcc-cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999888 5557777766544 334 56678888887654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-14 Score=133.12 Aligned_cols=252 Identities=12% Similarity=0.093 Sum_probs=110.3
Q ss_pred HHHHHHhcCChHHHHHHHhhc-C----CCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCC
Q 006955 275 VIVGYFEMGEVGSAIKVFELM-T----TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLP 349 (624)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 349 (624)
+...+.+.|++++|+++++.. . ..++..|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345566666667776666432 1 124455555555666667777777777777655322 33444444444 5667
Q ss_pred CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-----CCCchhHHHHHHHHHHcCChHHHHHHH
Q 006955 350 TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-----IHDIISWNSIICGLAYHGYAEKALELF 424 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 424 (624)
++++|..++....+.. +++..+..++..+.+.++++++..+++.+. ++++..|..+...+.+.|++++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777766554432 345555667777888888888888777643 346678888899999999999999999
Q ss_pred HHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 425 ERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 425 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
++..+ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|..++++.....
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99998 4675 567888999999999999999999998875 34578888999999999999999999999988742
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.|+.+...+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44788889999999999999999999888765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-09 Score=105.84 Aligned_cols=521 Identities=11% Similarity=0.137 Sum_probs=279.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHh
Q 006955 21 TVTWNVMIRGYFKNGFLDNAMCLFNQMPE-----RDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVC 95 (624)
Q Consensus 21 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 95 (624)
+..|-..++.+.++|++..-+..|+.... ....+|...+.-....+-++-+.+++++..+-++..-+-.+..+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35566666666677776666666665541 2335566666666666666667777766665555556666666666
Q ss_pred CCChhHHHHHhccCCC----------CCcccHHHHHHHHHcCC---ChHHHHHHHHhcccC--C--hhHHHHHHHHHHhC
Q 006955 96 NGLIDEALRVFHGMPL----------KDVVSWNLVIGALVNCQ---RMDLAESYFKEMGAR--D--VASWTIMVNGLVRE 158 (624)
Q Consensus 96 ~g~~~~a~~~~~~~~~----------~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~ 158 (624)
.+++++|-+.+..... .+-..|..+-...++.- .--....+++.+... | ...|.+|.+-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 6677666666665552 12223444433333321 122233444554442 2 24566666667777
Q ss_pred CChHHHHHHhccCCCC--ChhHHHHHHHHHHHc----------------C------ChhHHHHHHHHcccCC--------
Q 006955 159 GRIVEARKLFDKMPAK--DVQAWNLMIAGYLDN----------------G------CVGVAEDLFQKMHDRD-------- 206 (624)
Q Consensus 159 g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~~~~~~-------- 206 (624)
|++++|..++++.... .+.-++.+-+.|++- | +++-...-|+.+....
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 7777777766665432 222222222222211 1 1111222222222211
Q ss_pred -------cccHHHHHHHHHcCCCHHHHHHHhhhCC-------CCCc--chHHHHHHHHHhcCChHHHHHHHhhcCCCCcc
Q 006955 207 -------LTSWKQLINGLVNSRRIDAAISYFKQMP-------ETCE--KTWNSIISVLIRNGLVKEAHSYLEKYPYSNIA 270 (624)
Q Consensus 207 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (624)
+..|..-+. +..|+..+-...+.+.. .+.. ..|..+.+.|-..|+++.|..+|++....+-.
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 111111111 11233333333333222 1111 13555666666666666666666666644433
Q ss_pred hhhHHHHHHH-------hcCChHHHHHHHhhcCC-CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHH
Q 006955 271 SWTNVIVGYF-------EMGEVGSAIKVFELMTT-RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342 (624)
Q Consensus 271 ~~~~l~~~~~-------~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 342 (624)
...-|...++ +..+++.|+++.++... |.... ..+...+.+-++. + .-+...|...+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~r-l---------hrSlkiWs~y~ 484 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQAR-L---------HRSLKIWSMYA 484 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHHH-H---------HHhHHHHHHHH
Confidence 3333333333 33344555555444321 11100 1111111111110 0 11222344444
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC----CCCc-hhHHHHHHHHHH---c
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP----IHDI-ISWNSIICGLAY---H 414 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~l~~~~~~---~ 414 (624)
..-...|-++..+.+++.+.+..+-....+.| ....+-...-++++.+++++-. .|++ ..|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 44455678888888888888876654433333 2333445556788889988766 3443 367776655443 2
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHH--HHhcccChHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCChHH
Q 006955 415 GYAEKALELFERMRLTDFKPDDITFVGVL--SACSYAGLVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 490 (624)
...+.|..+|++..+ |.+|...-+..|+ ..-.+.|....|..+++++... +.+ -...|+..|.--...=-...
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 378999999999998 6777664333333 2234458888999999998763 555 35678877765544444555
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHH---HHHHhcCChHHHHHHHHHHHccCCC--CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALL---GACRIHNNIKVGEIAGERVMELEPN--NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
-..+|+++++. -|+...-..-+ ..-.+.|..++|..++.-..++-|+ +...+...=..-.++|+-+...+.+
T Consensus 641 TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 641 TREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred cHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66777777763 45544433333 2336789999999999988886543 4556788888888999955444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-11 Score=121.23 Aligned_cols=281 Identities=9% Similarity=-0.064 Sum_probs=186.6
Q ss_pred CCCHHHHHHHhhhCCCC--CcchHHH-HHHHHHhcCChHHHHHHHhhcC--CCCcchhh--HHHHHHHhcCChHHHHHHH
Q 006955 220 SRRIDAAISYFKQMPET--CEKTWNS-IISVLIRNGLVKEAHSYLEKYP--YSNIASWT--NVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 220 ~~~~~~A~~~~~~~~~~--~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~ 292 (624)
.|++++|.+.+....+. ++..+.. ...+..+.|+.+.+...+.++. .|+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57777777777665442 2222222 2334466677777777776666 22322222 2244566666666666666
Q ss_pred hhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCC
Q 006955 293 ELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF 369 (624)
Q Consensus 293 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (624)
+...+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~-------------------------- 229 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ-------------------------- 229 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH--------------------------
Confidence 665432 3445556666666666666666666666665433211 1110000
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
..+..++.......+.+...++++.++ +.++.....+..++...|+.++|..++++..+. .|+.... ++.+.
T Consensus 230 -~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~ 304 (398)
T PRK10747 230 -QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR 304 (398)
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence 011112222233344556666666665 457778888999999999999999999999873 5555322 23344
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKV 525 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 525 (624)
...++.+++.+..+...+. .| |+..+..+...+.+.|++++|.+.|+.+.+ ..|+...+..+..++...|+.++
T Consensus 305 l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred ccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHH
Confidence 4569999999999998875 36 677788999999999999999999999987 67999999999999999999999
Q ss_pred HHHHHHHHHccC
Q 006955 526 GEIAGERVMELE 537 (624)
Q Consensus 526 a~~~~~~~~~~~ 537 (624)
|..++++.+.+.
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999999998744
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-11 Score=113.04 Aligned_cols=261 Identities=12% Similarity=0.008 Sum_probs=200.3
Q ss_pred hhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 304 NVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
.....-+...+++.+..++.+...+.. ++....+..=|.++...|+..+-..+=..+.+. .|..+.++-++...|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 334445667788888888888877653 445555555555667777766666555566554 455566677788888888
Q ss_pred CCHHHHHHHhccCCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHH
Q 006955 384 GNIQSALLEFSSVPIH---DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 384 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
|+.++|.+.|.+...- -...|-....+|+..+..+.|+..+...-+. -|. ...+..+..-|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999887632 2357999999999999999999999888763 332 234445556788899999999999
Q ss_pred HHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC--CCCc----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEV----SPTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
..+.. +.| |+..++-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 404 ~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 98875 667 7888888888888899999999999886521 0111 234678888999999999999999999
Q ss_pred HHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 533 VMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 533 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+.|.++.++..++.+|...|+++.|.+.|.+.+...
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=124.02 Aligned_cols=276 Identities=13% Similarity=0.080 Sum_probs=156.4
Q ss_pred ChHHHHHHHhhcCCC--Cc-eehhhhhhHhhcCCCchHHHHHHHHhHHcC-C-CCCHHHHHHHHHHHcCCCCcHHHHHHH
Q 006955 284 EVGSAIKVFELMTTR--DV-TVWNVMIFGLGENDLGEEGLKFFVQMKESG-P-SPDNATFTSVLTICSDLPTLDLGRQIH 358 (624)
Q Consensus 284 ~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~ 358 (624)
+..+|...|..++.. ++ .+...+..+|...+++++|.++|+..++.. . .-+...|.+.+-..-+ +.+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 456666666664432 22 233445566777777777777777665541 1 1123344444433211 2222233
Q ss_pred HHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006955 359 AQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH---DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD 435 (624)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 435 (624)
.+-.-.--+..+.++-++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+++|...|+.... +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223445666666666666666777777776666522 334555555556666666666666666543 3333
Q ss_pred h-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 436 D-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 436 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
. ..|..+...|.+.++++.|.-.|+++.+ +.| +......+...+.+.|+.++|+.+++++.... +-|+..--.-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 3455555566666777777766666665 455 55555566666666667777777776665421 2234444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+..+...+++++|...++++.++.|.+..+|..++..|.+.|+.+.|+.=|.-+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 44555666667777777777667776666677777777777766666665555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=126.19 Aligned_cols=275 Identities=16% Similarity=0.175 Sum_probs=179.7
Q ss_pred ChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC------CceehhhhhhHhhcCCCchHHHHHH
Q 006955 253 LVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR------DVTVWNVMIFGLGENDLGEEGLKFF 323 (624)
Q Consensus 253 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (624)
+..+|...|.++. .....+...+..+|...+++++|.++|+.+.+. +...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 4566777776643 333355666777777778888888887777542 556677666554322 223333
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchh
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS 403 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 403 (624)
.+-.-.--+-.+.+|-++.++++-.++.+.|...|+.+++.. +.....|+-+..-+.....+|.|...|+.....|+..
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 221111123445677777777777777888887777776643 2255666666666677777777777777777555554
Q ss_pred HHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHH
Q 006955 404 WNS---IICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCV 478 (624)
Q Consensus 404 ~~~---l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 478 (624)
||+ +...|.+.++++.|+-.|++..+ +.|.. +....+...+.+.|+.++|+++++++.. +.| |+-.--..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 444 55667777778888877777776 55544 4455555667777777888887777765 445 55555556
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+..+...+++++|+..++++.+ +.|+ ..++-.+...|.+.|+.+.|+.-|.-+.+++|.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6667777778888888877776 4554 446666667777778888888777777777774
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-11 Score=119.57 Aligned_cols=79 Identities=10% Similarity=0.046 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHcccCCCCc-CH--HHHHHHHHHHHhcCChHHHHHHHH--HHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 486 GLIDEAMNLLNEIRADGIEV-SP--TVWGALLGACRIHNNIKVGEIAGE--RVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
++.+.+.+.+++..+. .| |+ ....++...|.+.|++++|.+.|+ ...+..| ++..+.+++..+.+.|+.++|
T Consensus 313 ~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 4445555555554442 23 23 344455555666666666666666 3444555 444455666666666666666
Q ss_pred HHHHHHH
Q 006955 561 KRIFAQM 567 (624)
Q Consensus 561 ~~~~~~m 567 (624)
.+++++.
T Consensus 390 ~~~~~~~ 396 (409)
T TIGR00540 390 AAMRQDS 396 (409)
T ss_pred HHHHHHH
Confidence 6666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-11 Score=119.50 Aligned_cols=282 Identities=10% Similarity=-0.045 Sum_probs=207.9
Q ss_pred HHhcCChHHHHHHHhhcC--CCCcch-hhHHHHHHHhcCChHHHHHHHhhcCC--CCce--ehhhhhhHhhcCCCchHHH
Q 006955 248 LIRNGLVKEAHSYLEKYP--YSNIAS-WTNVIVGYFEMGEVGSAIKVFELMTT--RDVT--VWNVMIFGLGENDLGEEGL 320 (624)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~ 320 (624)
....|+++.|.+.+.+.. .|++.. +-....++...|+.+.|...+.+..+ |+.. ..-.....+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 346899999999998877 333322 33445677888999999999998744 3332 3333577788899999999
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHh---Hh----hCCHHHHHHHh
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMY---AR----CGNIQSALLEF 393 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~ 393 (624)
..++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..++......-..++ .. ....+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998874 3345677788889999999999999999999987654333221111222 22 22234445556
Q ss_pred ccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHhcccChHHHHHHHHHHhhhhcC
Q 006955 394 SSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITF---VGVLSACSYAGLVDQGRYYFDCMKNKYF 467 (624)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 467 (624)
+..+. .++..+..+...+...|+.++|.+++++..+. .|+.... ..........++.+.+.+.++...+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 55552 47888999999999999999999999999984 5555421 11222234457888999999888874
Q ss_pred CCC-Cc--chHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 468 LQP-RS--AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 468 ~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
.| |+ ....++.+.+.+.|++++|.+.|+........|++..+..+...+...|+.++|.+++++.+.
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35 45 667789999999999999999999533333689998899999999999999999999999866
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-09 Score=102.95 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=173.6
Q ss_pred hhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH
Q 006955 310 LGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (624)
+.-.|+.-.+..-|+..++....++. .|.-+..+|....+.++....|....+.+ +.++.+|..-..++.-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 45568888999999988876433333 27677778899999999999999988875 45677788888888899999999
Q ss_pred HHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 390 LLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 390 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
..-|++... .++..|-.+..+..+.+++++++..|++..++ ++.-+..|+.....+...++++.|.+.++..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 999998873 35556666666777889999999999999985 455567999999999999999999999999887
Q ss_pred CCCCCc-------chH--HHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 467 FLQPRS-------AHY--TCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 467 ~~~p~~-------~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
+.|.. ..+ ..++-.= =.+++..|.+++++..+ +.| ....+.+|...-...|+.++|+++|++...+
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44541 111 1111111 23899999999999997 556 4668999999999999999999999999886
Q ss_pred CC
Q 006955 537 EP 538 (624)
Q Consensus 537 ~p 538 (624)
..
T Consensus 567 Ar 568 (606)
T KOG0547|consen 567 AR 568 (606)
T ss_pred HH
Confidence 65
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-10 Score=102.53 Aligned_cols=254 Identities=12% Similarity=0.042 Sum_probs=187.0
Q ss_pred cCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC-CCCC--cchhHHHHHHhHhhCCHHH
Q 006955 312 ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA-RNQF--TTVSNAMITMYARCGNIQS 388 (624)
Q Consensus 312 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~ 388 (624)
-++++++|.++|-+|.+.. +.+..+-.++.+.+.+.|.+|.|+++++.+.++- .+.+ ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567788888888877641 2222334456667777888888888888776631 1111 1122346677888899999
Q ss_pred HHHHhccCCC-C--CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccChHHHHHHHHHH
Q 006955 389 ALLEFSSVPI-H--DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD----ITFVGVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 389 A~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (624)
|+.+|..+.+ + -......++..|-...+|++|+++-+++.+.|-.+.. ..|.-+...+....+++.|..++++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999988875 3 2346777889999999999999999999886655544 2556666777778899999999999
Q ss_pred hhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 462 MKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 462 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
..+. .| ++..--.+.+.+...|+++.|++.++...+.+..--+.+...|..+|...|+.++....+.++.+..+ .
T Consensus 206 Alqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-g 281 (389)
T COG2956 206 ALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-G 281 (389)
T ss_pred HHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC-C
Confidence 8874 35 55555678888999999999999999998753222356888899999999999999999999999888 6
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 541 SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..-..+...-....-.+.|..++-+-..+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 677777777666666667777766665554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-10 Score=99.16 Aligned_cols=444 Identities=11% Similarity=0.005 Sum_probs=243.2
Q ss_pred HHHHHcCCChhhHHHHHhcCCC----CCchhHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCChH
Q 006955 59 IAGLMQSDNVQGAKEVFDGMEV----RDVVTWNSMISGYVCNGLIDEALRVFHGMPL---KDVVSWNLVIGALVNCQRMD 131 (624)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 131 (624)
+.-+....++..|+.+++.-.. ....+-..+..++.+.|++++|...+....+ ++...+..|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4556667788888888876551 1224556777888899999999999987764 55556666666666788899
Q ss_pred HHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcc--c
Q 006955 132 LAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT--S 209 (624)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~ 209 (624)
+|.++.....+ ++-....|.+...+.++-++-..+.+++... ..-.-+|.+.....-++.+|++++.+....+.. .
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 99888776543 3333344556666778777766666555433 233445566666666889999999998875443 3
Q ss_pred HHH-HHHHHHcCCCHHHHHHHhhhCCC--CCcch-HHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhc---
Q 006955 210 WKQ-LINGLVNSRRIDAAISYFKQMPE--TCEKT-WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEM--- 282 (624)
Q Consensus 210 ~~~-l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--- 282 (624)
.|. +.-+|.+..-++-+.++++--.+ ||+.. .+..+....+.=+-..|+.-.+.+. .|...-...+.-.++.
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la-dN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA-DNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH-hcccccchhHHHHHHcCeE
Confidence 333 33456677777777776665544 44332 2222222222111111111111111 0111111222233332
Q ss_pred --CChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHH-----cCCCCcHHHH
Q 006955 283 --GEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTIC-----SDLPTLDLGR 355 (624)
Q Consensus 283 --g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~ 355 (624)
.+-+.|++++-.+.+.=+...-.|+-.|.++++..+|..+.+++.- ..|-......+..+. .....+..|.
T Consensus 266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 2335566665444433334445566668889999999988877642 234333333333222 1122344555
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006955 356 QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD 435 (624)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 435 (624)
+.|+.+-.++...|.. .--.++.+.+.-..++++.+..+.....- +..|
T Consensus 344 qffqlVG~Sa~ecDTI------------------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~Nd 392 (557)
T KOG3785|consen 344 QFFQLVGESALECDTI------------------------------PGRQSMASYFFLSFQFDDVLTYLNSIESY-FTND 392 (557)
T ss_pred HHHHHhcccccccccc------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence 5555554444333221 11222333333344455555555555443 2222
Q ss_pred hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH-
Q 006955 436 DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL- 513 (624)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l- 513 (624)
...-..+..+.+..|+..+|.++|-.+... .++ |..+| ..|.++|.+.+.++.|+.++-++-. +.+..++..+
T Consensus 393 D~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlI 467 (557)
T KOG3785|consen 393 DDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLI 467 (557)
T ss_pred chhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHH
Confidence 222223555666667777777766555431 121 33333 3566777777777777777766652 2233333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
...|.+.+.+=-|-+.|..+..++| +|..|
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 3557777777777777777777777 44433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-10 Score=105.58 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=175.2
Q ss_pred cCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHH
Q 006955 282 MGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIH 358 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 358 (624)
.|++..|++...+-.+. .+..|..-..+..+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777777665443 222344444556667777777777777665422344445555555666777777777777
Q ss_pred HHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC-----------chhHHHHHHHHHHcCChHHHHHHHHHH
Q 006955 359 AQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD-----------IISWNSIICGLAYHGYAEKALELFERM 427 (624)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m 427 (624)
..+.+.+ +.++.+......+|.+.|+++....++.++.+.. ..+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776655 3345555666777777777777777777665321 135565665555555555555555555
Q ss_pred HHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH
Q 006955 428 RLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP 507 (624)
Q Consensus 428 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (624)
..+ .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+ ... .-...+-++.+.=++..++..+. .+.++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 443 4455555566666677777777777777776654 23333 111 11234556666666665554442 23345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+.+|...|.+++.+.+|...++.++...| +...|..++.++.+.|+.++|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6777777788888888888888887777777 777788888888888888888877777653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-11 Score=111.06 Aligned_cols=199 Identities=14% Similarity=0.053 Sum_probs=162.5
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
...+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 3455667788888899999988888765 3345678888889999999999999999998853 33446677778888
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
...|++++|...++++............+..+...+...|++++|.+.+++..+.. +.++..+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988742222245567778889999999999999999988742 33567888888999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-09 Score=104.04 Aligned_cols=443 Identities=15% Similarity=0.137 Sum_probs=242.7
Q ss_pred HHHHHHhCCChhHHHHHhccCCC--CC-cccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHH--HhCCChHH
Q 006955 89 MISGYVCNGLIDEALRVFHGMPL--KD-VVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGL--VREGRIVE 163 (624)
Q Consensus 89 l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 163 (624)
=+..+..+|++++|.+...++.. || ...+..=+-+..+.+.++.|..+.+.-...+......+=.+| .+.+..++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 34556677788888887777764 33 344555566667777787777555443321111111122333 46777888
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHH-HHcCCCHHHHHHHhhhCCCCCcchHH
Q 006955 164 ARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLING-LVNSRRIDAAISYFKQMPETCEKTWN 242 (624)
Q Consensus 164 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~ 242 (624)
|.+.++...+.+..+...-...+.+.|++++|.++|+.+.+.+...+...+.+ +...+-.-.+. +.+........+|.
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYE 176 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHH
Confidence 88877755444555555566677777888888888888777666554444332 11111111111 22222222223444
Q ss_pred HHHH---HHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHH-hhcCCCCc----------eehhhhhh
Q 006955 243 SIIS---VLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVF-ELMTTRDV----------TVWNVMIF 308 (624)
Q Consensus 243 ~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~----------~~~~~l~~ 308 (624)
.+.+ .+...|++.+|+++++... ++- +.+...|. ..--.|..
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 4333 3344566666666554431 000 00011100 11223444
Q ss_pred HhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH---HHcCCCC-cHH-HHHHHH-----------HHHHhCCCCCcch
Q 006955 309 GLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT---ICSDLPT-LDL-GRQIHA-----------QAIKIARNQFTTV 372 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~-~~~-a~~~~~-----------~~~~~~~~~~~~~ 372 (624)
.+...|+..+|.++|...++.. .+|........+ +.....+ ++. ....++ .+........+..
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5666778888888777777664 344322222221 1111111 110 111111 1111111111111
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCC-chhHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHD-IISWNSIICGLA--YHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACS 447 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 447 (624)
-+.++.+|. +..+.+.++....+... ...+.+++..+. +...+.++.+++....+. .|.. ......+....
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 233444443 44566666666665333 233444444332 223577888888887764 3433 45555666778
Q ss_pred ccChHHHHHHHHH--------HhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccC--CCCcCHH----HHHHH
Q 006955 448 YAGLVDQGRYYFD--------CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEVSPT----VWGAL 513 (624)
Q Consensus 448 ~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~----~~~~l 513 (624)
..|+++.|.+++. .+.+ +.-.+.+...+...|.+.++.+.|..++.+.... .-.+... ++.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 8999999999998 3332 2234666777888888888877777777765431 0112223 33333
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
...-.++|+.++|..+++++.+.+|++..+...+..+|... +.+.|..+-+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 33446789999999999999999999999999999999887 5777776654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-10 Score=102.21 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=119.4
Q ss_pred HHHHHHhcCChHHHHHHHhhcC-CCCcc------hhhHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcC
Q 006955 244 IISVLIRNGLVKEAHSYLEKYP-YSNIA------SWTNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGEN 313 (624)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~-~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~ 313 (624)
+.+.|-+.|..+.|++++..+. .||.. ....|..-|...|-+|.|+.+|..+.+.. ......|+..|-..
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t 154 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT 154 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh
Confidence 4444445555555555554444 22221 12234556777777777777777776533 23455677778888
Q ss_pred CCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHh
Q 006955 314 DLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEF 393 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (624)
.+|++|++.-+++.+.+-.+...-.. ..|..|...+....+++.|..++
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIA-------------------------------qfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIA-------------------------------QFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHH-------------------------------HHHHHHHHHHhhhhhHHHHHHHH
Confidence 88888888877777654333322110 00112223333334444444444
Q ss_pred ccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC
Q 006955 394 SSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP 470 (624)
Q Consensus 394 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 470 (624)
.+... ..+..--.+.......|++++|.+.|+...+.+..--..+...|..+|.+.|+.++...++.++.+. .+
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~ 280 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NT 280 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cC
Confidence 44331 1222223344455566666666666666665432222345555555666666666666666655552 24
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
++..-..+.+......-.+.|...+.+-+. -+|+...+..|+...
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 444444444443333333444443333222 255555555555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-09 Score=104.19 Aligned_cols=281 Identities=10% Similarity=0.024 Sum_probs=201.2
Q ss_pred CcchhhHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHH
Q 006955 268 NIASWTNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTI 344 (624)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 344 (624)
++.+...-.+-+...+++.+..++++.+.+.| ...+..-|.++...|+..+-..+=.+|.+. .+-.+.+|-++..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 44444555566667778888888888776644 344555566777788877777777777765 23445677777777
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
|...|+.++|+++|.+.......- ...+-.....|.-.|.-+.|+..+.... +..-..+--+.--|.+.++..-|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 777788888888888766543222 2344556777888888888877665443 111112333445678899999999
Q ss_pred HHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhc-CCCC----CcchHHHHHHHhhccCChHHHHHHH
Q 006955 422 ELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKY-FLQP----RSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+.|.+... +-|+. ...+-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999877 66655 566666656667889999999999877421 0111 2345788999999999999999999
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS 553 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 553 (624)
++.+... +.+..++.++.-.|...|+++.|...|.+++-+.|+|..+-..|..+...
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9988742 45788999999999999999999999999999999776666666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-08 Score=98.62 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=128.4
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIHD---IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACS 447 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 447 (624)
++...++.--..|-++....+++++.+-. +..--.....+-.+.-++++.+++++-...--.|+. ..|+..+.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 34445566666778888888888877322 222222222334556678899999887765334554 36666655443
Q ss_pred c---cChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhc
Q 006955 448 Y---AGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIH 520 (624)
Q Consensus 448 ~---~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~ 520 (624)
+ ...++.|+.+|++..+ +.+|. -..|-.....-.+.|-...|+++++++... +++. ...|+..|.-....
T Consensus 559 ~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH
Confidence 2 3578999999999998 46562 223334444445678999999999997643 4543 34788777554333
Q ss_pred CChHHHHHHHHHHHccCCCCCc--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCC
Q 006955 521 NNIKVGEIAGERVMELEPNNSG--VYLILTEMYLSCGRREDAKRIFAQMKENGVKKEP 576 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 576 (624)
=-......+|+++++.-|++-. .....+..-.+.|..+.|..++.--.+-.-+...
T Consensus 636 yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~ 693 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT 693 (835)
T ss_pred hCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC
Confidence 3345667899999998884332 2444555667889999999999765554433333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-09 Score=99.64 Aligned_cols=280 Identities=11% Similarity=0.007 Sum_probs=186.9
Q ss_pred CCCHHHHHHHhhhCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhcCCC--C--cchhhHHHHHHHhcCChHHHHHHH
Q 006955 220 SRRIDAAISYFKQMPETCE---KTWNSIISVLIRNGLVKEAHSYLEKYPYS--N--IASWTNVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 220 ~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~A~~~~ 292 (624)
.|+|.+|++++.+..+... ..|..-..+.-..|+.+.+-.++.++.++ | ..+.-+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6788888888777554221 23444445666777777777777776622 2 223444555566667777666665
Q ss_pred hhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCC
Q 006955 293 ELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF 369 (624)
Q Consensus 293 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (624)
+++.. .++........+|.+.|++.....++..|.+.|+-.++..-.. .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------------------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------------------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------H
Confidence 55432 3556666667777777777777777777777664443321000 0
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
..+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+++..|+. ...-.+
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhh
Confidence 0112222222222223333334555554 445666777788888999999999999999988777772 223346
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
.+-++...-++..+...+.++- ++..+..|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++...|+...|
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 6777877777777777765432 557888999999999999999999998776 689999999999999999999999
Q ss_pred HHHHHHHHc
Q 006955 527 EIAGERVME 535 (624)
Q Consensus 527 ~~~~~~~~~ 535 (624)
.+..++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 999998875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-09 Score=94.91 Aligned_cols=458 Identities=12% Similarity=0.053 Sum_probs=278.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC----CcchHHHHHHHHHcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChh
Q 006955 28 IRGYFKNGFLDNAMCLFNQMPER----DMFTYNTVIAGLMQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLID 100 (624)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 100 (624)
+.-+..+.++..|+.+++--... ...+-.-+..++...|++++|...+..+. .++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 44556677888999888876621 12334445667778999999999998765 456667777777778889999
Q ss_pred HHHHHhccCCCCCcccH-HHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCC--hh
Q 006955 101 EALRVFHGMPLKDVVSW-NLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKD--VQ 177 (624)
Q Consensus 101 ~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~ 177 (624)
+|..+-.+. |+.... ..++....+.++-++-..+.+.+... ..--.+|.......-.+.+|++++..+...+ -.
T Consensus 109 eA~~~~~ka--~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 109 EAKSIAEKA--PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHhhC--CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 999887766 443333 44445556788888777777666432 2444556666555667889999999888543 33
Q ss_pred HHHH-HHHHHHHcCChhHHHHHHHHccc--CC-cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhc--
Q 006955 178 AWNL-MIAGYLDNGCVGVAEDLFQKMHD--RD-LTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRN-- 251 (624)
Q Consensus 178 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~-- 251 (624)
..|. +..+|.+..-++-+.+++.--.+ +| ..+.|..+....+.=+-..|..-...+.+.-...|. .+.-+++.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNL 264 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNL 264 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCe
Confidence 4443 34566777777777777666554 22 223444444444332222233222222221111121 12222222
Q ss_pred ---CChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCC-------CchHHHH
Q 006955 252 ---GLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGEND-------LGEEGLK 321 (624)
Q Consensus 252 ---~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 321 (624)
.+-+.|.+++-.+...-+...-.|+-.|.+.|++++|..+.+++..-++.-|-.-.-.+...| ...-|..
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 233666666655554445556667778889999999999988876544433322212222222 2334555
Q ss_pred HHHHhHHcCCCCCHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC-
Q 006955 322 FFVQMKESGPSPDNA-TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH- 399 (624)
Q Consensus 322 ~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 399 (624)
.|+-.-+++..-|.. .-.++...+.-..+++.+..++..+...-...|...+| +..+++..|++.+|+++|-.+..|
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChh
Confidence 554443343332221 12233333444456788888887777766666666666 888999999999999999888754
Q ss_pred --CchhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH
Q 006955 400 --DIISWNS-IICGLAYHGYAEKALELFERMRLTDFKPDDITFV-GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY 475 (624)
Q Consensus 400 --~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 475 (624)
|..+|.+ +..+|.+.++++.|+.++-++.. +.+..+.. .+..-|.+.+.+=-|-+.|+.+.. +.|++..|
T Consensus 424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnW 497 (557)
T KOG3785|consen 424 IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENW 497 (557)
T ss_pred hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCcccc
Confidence 4456655 45678889999998887766532 22333333 444578888888888888887776 56888877
Q ss_pred HHHHHHhhccCChHHHHHHHHHcccCCCCc
Q 006955 476 TCVVDLLGRFGLIDEAMNLLNEIRADGIEV 505 (624)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (624)
. |.......+|..+....-.|
T Consensus 498 e---------GKRGACaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 498 E---------GKRGACAGLFRQLANHKTDP 518 (557)
T ss_pred C---------CccchHHHHHHHHHcCCCCC
Confidence 4 44444555666555433333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-08 Score=98.06 Aligned_cols=344 Identities=14% Similarity=0.138 Sum_probs=154.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhH-HHHHHHH-----
Q 006955 20 DTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTW-NSMISGY----- 93 (624)
Q Consensus 20 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l~~~~----- 93 (624)
|......+..++.+..-+++|-.+|+++..++. .+.+|.+..-+..|+++-+...+..+++. ..-...+
T Consensus 647 de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 647 DEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred cHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh
Confidence 444455555666666666777777776665543 33444333334444444333222111111 1112222
Q ss_pred ---------------------HhCCChhHHHHHhccCCCCCcc--cHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHH
Q 006955 94 ---------------------VCNGLIDEALRVFHGMPLKDVV--SWNLVIGALVNCQRMDLAESYFKEMGARDVASWTI 150 (624)
Q Consensus 94 ---------------------~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (624)
....++.+|+.+++.+...++. -|..+...|...|+++.|.++|.+.. .++.
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~d 796 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKD 796 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHH
Confidence 3334444444444444322211 24444455555555555555554332 3344
Q ss_pred HHHHHHhCCChHHHHHHhccCCCC--ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHH
Q 006955 151 MVNGLVREGRIVEARKLFDKMPAK--DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAIS 228 (624)
Q Consensus 151 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (624)
.|.+|.+.|+|++|.++-.+...| .+..|-+-..-.-++|++.+|+++|-.+..|+. .|+.|-+.|..+..++
T Consensus 797 ai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHH
Confidence 445555555555555555444433 223344444444455555555555554444443 3455555555555555
Q ss_pred HhhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhh
Q 006955 229 YFKQMPE-TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMI 307 (624)
Q Consensus 229 ~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 307 (624)
+..+-.. .-..|...+..-+-..|++..|+.-|-+. .-|.+.+++|...+-|++|.++-+.--..+..- .++
T Consensus 872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea-----~d~kaavnmyk~s~lw~dayriaktegg~n~~k--~v~ 944 (1636)
T KOG3616|consen 872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA-----GDFKAAVNMYKASELWEDAYRIAKTEGGANAEK--HVA 944 (1636)
T ss_pred HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh-----hhHHHHHHHhhhhhhHHHHHHHHhccccccHHH--HHH
Confidence 5544321 11224444455555556666665554322 234455555555555555555543222111111 111
Q ss_pred hHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 308 FGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
....++=--+.|.+++++. | .+...+.-.+..+.++-|..+-+-..+... ..+.-.+...+...|+++
T Consensus 945 flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~---~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 945 FLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM---GEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred HHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC---ccchhHHhhhhhhccchh
Confidence 1112221223444444331 1 011122223444555555555444333321 112233445566778888
Q ss_pred HHHHHhccCC
Q 006955 388 SALLEFSSVP 397 (624)
Q Consensus 388 ~A~~~~~~~~ 397 (624)
+|-+-+-+..
T Consensus 1013 daskhyveai 1022 (1636)
T KOG3616|consen 1013 DASKHYVEAI 1022 (1636)
T ss_pred hhhHhhHHHh
Confidence 8866655544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-09 Score=104.59 Aligned_cols=467 Identities=11% Similarity=0.065 Sum_probs=247.3
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHhcCC----CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHH
Q 006955 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGME----VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGAL 124 (624)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 124 (624)
.|+..+|.+++.-||..|+.+.|- +|..|. +-+...++.++....+.++.+.+. .|.+.+|..|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 566666666666666666666666 666555 224455666666655555555443 45566666666666
Q ss_pred HcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCC-CC-ChhHHHHHHHHHHHcCChhHHHHHHHHc
Q 006955 125 VNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP-AK-DVQAWNLMIAGYLDNGCVGVAEDLFQKM 202 (624)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 202 (624)
.+.||+.. .+..++ -...+...+...|.-..-..++..+. .| ....-...+....-.|-++.+++++..+
T Consensus 94 r~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66666554 111111 11223333444444444444443322 11 1111222333334445555555555555
Q ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHh-cCChHHHHHHHhhcC-CCCcchhhHHHHHHH
Q 006955 203 HDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIR-NGLVKEAHSYLEKYP-YSNIASWTNVIVGYF 280 (624)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~ 280 (624)
...... + ++..+++-+.. ...+++-..+.+... .+++.++..++..-.
T Consensus 166 Pvsa~~----------------------------~--p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 166 PVSAWN----------------------------A--PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRAL 215 (1088)
T ss_pred Cccccc----------------------------c--hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 431110 0 11111221111 111222222222222 366666777777777
Q ss_pred hcCChHHHHHHHhhcCCCC----ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcH----
Q 006955 281 EMGEVGSAIKVFELMTTRD----VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLD---- 352 (624)
Q Consensus 281 ~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---- 352 (624)
..|+++.|..++..|.+.. ..-|-.|+-+ .+....+..+++-|.+.|+.|+..|+...+..+...|...
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc
Confidence 7777777777777776542 2222233322 6666777777788888888888888776666555522211
Q ss_pred --------------------HHHHHHHH------------HHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC-
Q 006955 353 --------------------LGRQIHAQ------------AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH- 399 (624)
Q Consensus 353 --------------------~a~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 399 (624)
.+...++. ..=.|......++... .-...+|+-+..+++-..+..|
T Consensus 293 ~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 293 GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCc
Confidence 11111111 0001333333333322 2222356666666666655522
Q ss_pred ------CchhHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCChh--------------
Q 006955 400 ------DIISWNSIICGLAYHG----------------------YAEKALELFERMRLTDFKPDDI-------------- 437 (624)
Q Consensus 400 ------~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~m~~~g~~p~~~-------------- 437 (624)
++..|..++.-|.+.- +..+..+.+.. ..||..
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler 446 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELER 446 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhc
Confidence 3334444443332211 11111111111 122221
Q ss_pred --------------hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccC--
Q 006955 438 --------------TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-- 501 (624)
Q Consensus 438 --------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 501 (624)
.-+.++..|.+.-+..++...-+..... + -...|..||+.+......+.|..+..+....
T Consensus 447 ~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~--l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~ 522 (1088)
T KOG4318|consen 447 SHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL--L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDE 522 (1088)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccch
Confidence 1123333444444444444433333322 1 1367889999999999999999999987632
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc---cCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCcc
Q 006955 502 GIEVSPTVWGALLGACRIHNNIKVGEIAGERVME---LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKK 574 (624)
Q Consensus 502 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 574 (624)
.+..|...+..+.+...+.+....+..++++..+ ..|.-..++..+.+.....|+.+...++.+-+...|+..
T Consensus 523 s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 523 SIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 2334556677788888888888888888888876 334445668888888889999999999999888888776
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-08 Score=92.38 Aligned_cols=269 Identities=9% Similarity=0.017 Sum_probs=186.9
Q ss_pred CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhh---hhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHH
Q 006955 266 YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVM---IFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVL 342 (624)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 342 (624)
+.|......+..++...|+.++|+..|+....-|+.+...| .-.+.+.|+.+....+...+.... .-+...|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 56666777777888888888888888877665444332222 223455677777766666665431 12222232223
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHH
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEK 419 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 419 (624)
.......+++.|..+-.+.++... .+...+-.-...+...|+.++|.-.|.... +-+..+|.-++.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 333445666666666665555431 122222223456677888888888887665 3477899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHH-HHhc-ccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHH
Q 006955 420 ALELFERMRLTDFKPDDITFVGVL-SACS-YAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
|.-+-+...+. +..+..+...+. ..|. ....-++|.+++++..+ +.|+ ....+.+.+.+.+.|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98888776653 344555655552 3333 33446789999988776 5674 6677888899999999999999999
Q ss_pred HcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
+... ..||....+.|.+.+...+.+++|...|..++.++|++..
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 9876 6899999999999999999999999999999999996643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.4e-09 Score=102.16 Aligned_cols=397 Identities=14% Similarity=0.097 Sum_probs=248.7
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCC-----cchHHHHH
Q 006955 174 KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPETC-----EKTWNSII 245 (624)
Q Consensus 174 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ll 245 (624)
.|...|..|.-+....|++..+.+.|++...- ....|+.+...|...|.-..|+.+++.-..+. +..+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 46777888888888888888888888887652 33467888888888888888888887765422 22333333
Q ss_pred HHHH-hcCChHHHHHHHhhcC--------CCCcchhhHHHHHHHhc-----------CChHHHHHHHhhcCCCCceehhh
Q 006955 246 SVLI-RNGLVKEAHSYLEKYP--------YSNIASWTNVIVGYFEM-----------GEVGSAIKVFELMTTRDVTVWNV 305 (624)
Q Consensus 246 ~~~~-~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 305 (624)
..|. +.+..+++..+-.++. ...+..+..+.-+|... ....++++.+++..+.+..-++.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3443 3455566555544444 22233344444444332 12345666677665433322222
Q ss_pred ---hhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-hCCCCCcchhHHHHHHhH
Q 006955 306 ---MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK-IARNQFTTVSNAMITMYA 381 (624)
Q Consensus 306 ---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 381 (624)
+.--|+..++.+.|+...++..+-+-.-+...+..+.-.+...+++..|..+.+.... .|.......- -+..-.
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~--~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG--KIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh--hhhhhh
Confidence 3333666778888888888888776566777777777777778888888888775544 2321110000 011111
Q ss_pred hhCCHHHHHH-------Hhc-------------------cCC------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006955 382 RCGNIQSALL-------EFS-------------------SVP------IHDIISWNSIICGLAYHGYAEKALELFERMRL 429 (624)
Q Consensus 382 ~~g~~~~A~~-------~~~-------------------~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 429 (624)
..++.++++. +|+ .+. ...+.++..+..-....+....-... |..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~ 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPS 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCc
Confidence 1233333321 222 111 11122333322221111110000000 222
Q ss_pred CCCCCCh--------hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 430 TDFKPDD--------ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 430 ~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.-+.|.. ..|......+...+..++|...+.++.. +.| ....|......+...|.+++|.+.|.....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 2233332 2344555677888899999988888776 445 777888888889999999999999999887
Q ss_pred CCCCcC-HHHHHHHHHHHHhcCChHHHHH--HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCc
Q 006955 501 DGIEVS-PTVWGALLGACRIHNNIKVGEI--AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 501 ~g~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 577 (624)
+.|+ +....++...+...|+...|.. ++..+++++|.++..|..|+.++...|+.++|.+.|....... +.+|-
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe-~S~PV 789 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE-ESNPV 789 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc-cCCCc
Confidence 6675 6688899999999999998888 9999999999999999999999999999999999999876553 24454
Q ss_pred eeEE
Q 006955 578 CSWI 581 (624)
Q Consensus 578 ~~~~ 581 (624)
..|.
T Consensus 790 ~pFs 793 (799)
T KOG4162|consen 790 LPFS 793 (799)
T ss_pred cccc
Confidence 4444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-07 Score=90.84 Aligned_cols=434 Identities=14% Similarity=0.094 Sum_probs=216.2
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcc-cHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHh
Q 006955 90 ISGYVCNGLIDEALRVFHGMPLKDVV-SWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLF 168 (624)
Q Consensus 90 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 168 (624)
+.+|....++++|+.+-+..-.|... .-.+.++++...|+-++|-++ ...+-.+ .+.|..|.+.|.+..|.+..
T Consensus 564 igmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~sdgd~-laaiqlyika~~p~~a~~~a 638 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL----KESDGDG-LAAIQLYIKAGKPAKAARAA 638 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh----ccccCcc-HHHHHHHHHcCCchHHHHhh
Confidence 34444445555555554444333222 223334444445555444432 1222222 33455666666666655543
Q ss_pred c--cCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchH-HHHH
Q 006955 169 D--KMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW-NSII 245 (624)
Q Consensus 169 ~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~ll 245 (624)
. +....|......+..++.+..-+++|=++|+++...+. .+.+|.+..-+-+|+++-+-.-...+++. ....
T Consensus 639 ~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg 713 (1636)
T KOG3616|consen 639 LNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWG 713 (1636)
T ss_pred cCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHh
Confidence 2 11123444444444444444445555555555443221 22222222223333333322211111111 1112
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCce--ehhhhhhHhhcCCCchHHHHHH
Q 006955 246 SVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVT--VWNVMIFGLGENDLGEEGLKFF 323 (624)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~ 323 (624)
..+...|+++.|..-|-+.. -....+.+......|.+|+.+++.+..+++. -|..+...|...|+++.|.++|
T Consensus 714 ~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHH
Confidence 23333444444444332211 1112233445556677777777766655433 3555666677777777777766
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchh
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIIS 403 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 403 (624)
-+.- .++-.+..|.+.|+++.|.++-.+ -.|.+..+..|-+-..-+-+.|++.+|.+++-.+..|+.
T Consensus 789 ~e~~---------~~~dai~my~k~~kw~da~kla~e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-- 855 (1636)
T KOG3616|consen 789 TEAD---------LFKDAIDMYGKAGKWEDAFKLAEE--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-- 855 (1636)
T ss_pred Hhcc---------hhHHHHHHHhccccHHHHHHHHHH--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH--
Confidence 5421 234455566677777666555432 234444444555555556667777777777777766654
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 481 (624)
.|..|-++|..+..+++.++- .|+. .|...+..-+...|++..|...|-+... |.+-+++
T Consensus 856 ---aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnm 917 (1636)
T KOG3616|consen 856 ---AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNM 917 (1636)
T ss_pred ---HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHH
Confidence 356777777777777776653 2332 4556666677777888887776654332 4455666
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHH-------------------HHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWG-------------------ALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~-------------------~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
|-..+.|++|-++.+.--..+... -...|. .-+.-.+..+.++-|..+.+-..+- ..+
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~ 995 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMG 995 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCc
Confidence 666777777766654321111000 011111 0111122344444444444433332 245
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.....++..+...|++++|-+-+-+..+.+
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 667777778888899999877666655543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-08 Score=96.37 Aligned_cols=424 Identities=13% Similarity=0.101 Sum_probs=218.8
Q ss_pred HHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhHHHHHhcCCCC--CchhHHHHHHHHHhCCChhHH
Q 006955 28 IRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVR--DVVTWNSMISGYVCNGLIDEA 102 (624)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 102 (624)
+..+..+|++++|.+...++. +.+..++..=+.++.+.+++++|+.+.+.-..- +.+-+.--.-+.-+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 445667788888888877776 345566666667777888888888766654421 111111222333467888888
Q ss_pred HHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHH-HHhCCChHHHHHHhccCCCCChhHHH-
Q 006955 103 LRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNG-LVREGRIVEARKLFDKMPAKDVQAWN- 180 (624)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~- 180 (624)
+..++-..+.+..+...-...+-+.+++++|..+|+.+.+.+...+...+.+ +...+-.-.+. +.+........+|.
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHH
Confidence 8888855455555666667778888888888888888877544444333322 11111111221 33333332222333
Q ss_pred --HHHHHHHHcCChhHHHHHHHHccc--------CCcc----------cHHHHHHHHHcCCCHHHHHHHhhhCCC---CC
Q 006955 181 --LMIAGYLDNGCVGVAEDLFQKMHD--------RDLT----------SWKQLINGLVNSRRIDAAISYFKQMPE---TC 237 (624)
Q Consensus 181 --~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 237 (624)
.....+...|++.+|+++++...+ .|.. .--.|..++...|+.++|.+++....+ +|
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 334456678888888888888722 1111 133455566778888888888877765 33
Q ss_pred cchHHHHHHHH---HhcCCh-H-HHHHHHhhcC---------------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 238 EKTWNSIISVL---IRNGLV-K-EAHSYLEKYP---------------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 238 ~~~~~~ll~~~---~~~~~~-~-~a~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
........+-+ ....++ + .+...++... ...+..-+.++..| .+..+.+.++-...+.
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~ 335 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG 335 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc
Confidence 32222211111 111111 1 0111111111 11111112222222 3444555555555444
Q ss_pred CC-ceehhhhhhHh--hcCCCchHHHHHHHHhHHcCCCCCH--HHHHHHHHHHcCCCCcHHHHHHHH--------HHHHh
Q 006955 298 RD-VTVWNVMIFGL--GENDLGEEGLKFFVQMKESGPSPDN--ATFTSVLTICSDLPTLDLGRQIHA--------QAIKI 364 (624)
Q Consensus 298 ~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~ 364 (624)
.. ...+.+++..+ .+...+.++.+++...-+. .|.. ......+......|+++.|..++. .+.+.
T Consensus 336 ~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 336 MSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 32 12233333332 2222466666666665544 3333 333344455566777777777777 33333
Q ss_pred CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC------CCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006955 365 ARNQFTTVSNAMITMYARCGNIQSALLEFSSVP------IHDI----ISWNSIICGLAYHGYAEKALELFERMRLTDFKP 434 (624)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 434 (624)
+..| .+..++...|.+.++.+.|..++.+.. .+.. .++.-+...-.++|+.++|..+++++.+. .++
T Consensus 414 ~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~ 490 (652)
T KOG2376|consen 414 KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPN 490 (652)
T ss_pred ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCc
Confidence 3333 334455666666666555555554433 1111 12222333334556666666666666663 244
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
|..+...++.+|++. +++.|..+-+
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 445556666665554 4455544433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.6e-08 Score=96.15 Aligned_cols=300 Identities=14% Similarity=0.151 Sum_probs=172.3
Q ss_pred CChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC------------CCcchHHHHHHHHHcCCChhhH
Q 006955 4 ARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE------------RDMFTYNTVIAGLMQSDNVQGA 71 (624)
Q Consensus 4 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A 71 (624)
|+++.|-+..+.+. +..+|..+.+.+.+..+++-|.-.+-.|.+ .+...=..+.......|-+++|
T Consensus 742 G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA 819 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEA 819 (1416)
T ss_pred ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHH
Confidence 56666666554443 345688888888887777777666666541 1112222233333456777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCC-CcccHHHHHHHHHcCCChHHHHHHHHhcccC-------
Q 006955 72 KEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLK-DVVSWNLVIGALVNCQRMDLAESYFKEMGAR------- 143 (624)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 143 (624)
+.+|++... |..|=..|-..|.+++|.++-+.--+- -..||......+-..+|.+.|++.|++...+
T Consensus 820 ~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 820 LILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred HHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 777776553 444555667778888887776654432 2235666666666677788888877765421
Q ss_pred ----------------ChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCc
Q 006955 144 ----------------DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDL 207 (624)
Q Consensus 144 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 207 (624)
|+..|.-...-+-..|+.+.|+.++.. ..-|.++++..+-.|+.++|.++-++- .|.
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~-----A~D~fs~VrI~C~qGk~~kAa~iA~es--gd~ 967 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS-----AKDYFSMVRIKCIQGKTDKAARIAEES--GDK 967 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH-----hhhhhhheeeEeeccCchHHHHHHHhc--ccH
Confidence 333333333344456777777777654 234556666666777777777776653 355
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHH---------------HHHHHhhcCCCCcchh
Q 006955 208 TSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKE---------------AHSYLEKYPYSNIASW 272 (624)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---------------a~~~~~~~~~~~~~~~ 272 (624)
.....|.+.|-..|++.+|+..|-+.. +|...|+.|-.++.-++ |-.+|++.. .-.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq-----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~~~ 1038 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ-----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG----GYA 1038 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hhh
Confidence 667788888888888888888887763 34444444433332222 222222211 112
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCC--------------CCceehhhhhhHhhcCCCchHHHHHHHHh
Q 006955 273 TNVIVGYFEMGEVGSAIKVFELMTT--------------RDVTVWNVMIFGLGENDLGEEGLKFFVQM 326 (624)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 326 (624)
...+..|-+.|.+.+|+++-=.-.+ .|+...+--...++...++++|..++-..
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2334456666666666553211111 13333444444566667777777666443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=92.62 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 481 (624)
...+.-.|...|+...|..-+++.++. .|+. .++..+...|.+.|+.+.|.+-|++... +.| +-.+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445666788899999999999998884 5655 5888888888999999999999998886 557 67888889999
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
+|..|++++|...|++....-.-| -+.+|..+..+..+.|+++.|+..+++.++.+|+++.....++......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999887532222 2458888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 006955 561 KRIFAQMKENGV 572 (624)
Q Consensus 561 ~~~~~~m~~~~~ 572 (624)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988877663
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-10 Score=98.80 Aligned_cols=227 Identities=10% Similarity=-0.001 Sum_probs=173.2
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--CC-CchhHHHHHHHHHHcCC
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--IH-DIISWNSIICGLAYHGY 416 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~ 416 (624)
.+..+|.+.|.+..|...++...+. .|-+.+|-.|-.+|.+..++..|+.+|.+.. -| ++....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4445555566666666655555443 2334445556667777777777777776665 22 33333445666777888
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
.++|.++++...+.. ..|......+...|.-.++++.|..+++++.+- |+ .++..|+.+.-+|.-.++++-++..|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999988742 344556667777788889999999999999874 44 478888888888888999999999999
Q ss_pred HcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 497 EIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 497 ~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+....--.|+ ..+|-.|.......||+..|.+.|+.++..+|++...++.|+-.-.+.|+.++|..++...+...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8776544454 45898998888999999999999999999999999999999999999999999999999887654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-09 Score=98.58 Aligned_cols=192 Identities=15% Similarity=0.117 Sum_probs=130.2
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChH
Q 006955 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAE 418 (624)
Q Consensus 342 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 418 (624)
...+...|+++.|...+..+.+.. +.+...+..+...+...|++++|.+.+++.. +.+...+..+...+...|+++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 116 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHH
Confidence 333344444444444444433322 1223333445555555666666666555443 234456677777888888999
Q ss_pred HHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHH
Q 006955 419 KALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
+|...+++..+....| ....+..+..++...|++++|...+++..+. .| +...+..+...+...|++++|.+.++
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998887643223 2345666777888899999999999988874 34 56678888899999999999999999
Q ss_pred HcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+..+. .+.++..+..+...+...|+.+.|..+.+.+....|
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 194 RYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 98775 244566777777888889999999998888766544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=112.67 Aligned_cols=246 Identities=13% Similarity=0.056 Sum_probs=147.6
Q ss_pred CCchHHHHHHHHhHHcCCCCCHH-HHHHHHHHHc---------CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 314 DLGEEGLKFFVQMKESGPSPDNA-TFTSVLTICS---------DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
+.+++|...|++..+. .|+.. .+..+..++. ..++.+.|...++.+.+.. +.+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3456888888887765 55543 3444433332 1233667777777777654 33445556666677777
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
|++++|...|++.. +.+...|..+..++...|++++|...+++..+ ..|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 77888877777765 33445667777777777888888888877776 345432 2223333455567777777777
Q ss_pred HHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+++.+. ..| ++..+..+..+|...|+.++|...+.++.. ..|+.. ..+.+...+...| +.|...++++.+..
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 776653 234 344466677777777888888877777654 244433 3344444555555 36666666665533
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
-..+.....+...|.-.|+.+.+..+ +++.+.|
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222223355566666777766666 6665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-09 Score=109.96 Aligned_cols=174 Identities=13% Similarity=0.015 Sum_probs=75.2
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHH
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (624)
+++|...+++.. +.+...+..+...+...|++++|...+++..+ ..|+. ..+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444544444443 22333444444444445555555555555544 23332 2344444444455555555555555
Q ss_pred hhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 462 MKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 462 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+.+ +.|+ +..+..++..+...|++++|+..++++.+.. .| ++..+..+..++...|+.++|...++++....|.
T Consensus 398 Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 444 2232 1122222223333445555555554443321 22 2223333444444455555555555554444444
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 540 NSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+......++..|...| ++|...++++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 4444444444444444 2444444443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=109.14 Aligned_cols=253 Identities=15% Similarity=0.161 Sum_probs=181.3
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD 400 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (624)
.++-.+...|+.|+.+||..++.-|+..|+.+.|. +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999999999999999999999999998887665 678
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 480 (624)
..+|..+..+|..+|+... .+..++ -...+...+...|.-..-..++..+.-..+..||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999866 222222 122344455666666666666665443333444433 3445
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI-HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
...-.|-|+.+++++..+.-..... +... +++-+.. ...+++-..+.+...+ .| ++.+|..+..+-...|+.+-
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhh
Confidence 5566778888888887776432111 1111 3444433 3455555555555555 55 88899999999999999999
Q ss_pred HHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHH
Q 006955 560 AKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNL 609 (624)
Q Consensus 560 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (624)
|..++.+|+++|++.++...|..+.| ..+.|-...+.+.+.+
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g--------~~~~q~~e~vlrgmqe 264 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG--------INAAQVFEFVLRGMQE 264 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc--------CccchHHHHHHHHHHH
Confidence 99999999999999999888886543 4444544444444433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-11 Score=77.74 Aligned_cols=50 Identities=30% Similarity=0.557 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-09 Score=105.76 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHh-----CC-CCC-cchhHHHHHHhHhhCCHHHHHHHhccCC--------CCC
Q 006955 336 ATFTSVLTICSDLPTLDLGRQIHAQAIKI-----AR-NQF-TTVSNAMITMYARCGNIQSALLEFSSVP--------IHD 400 (624)
Q Consensus 336 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~ 400 (624)
.++..+...|...|+++.|...++...+. |. .|. ....+.+...|...+++++|..+|+++. ..+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666666666666666666655443 10 111 1122345667777888888877777664 112
Q ss_pred ---chhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcC--C
Q 006955 401 ---IISWNSIICGLAYHGYAEKALELFERMRL-----TDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYF--L 468 (624)
Q Consensus 401 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 468 (624)
..+++.|..+|...|++++|...+++..+ .|..+.. ..++.+...|...+++++|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 24677788889999999988888877643 1222222 2556677788899999999999988765432 1
Q ss_pred CCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----CC--CcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc--
Q 006955 469 QPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GI--EVS-PTVWGALLGACRIHNNIKVGEIAGERVME-- 535 (624)
Q Consensus 469 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 535 (624)
.++ ..+++.|...|...|++++|.+++++++.. +. .+. ...++.+...|...+....|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467889999999999999999999987542 11 222 45778888999999999999999998876
Q ss_pred --cCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 536 --LEPNNS---GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 536 --~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..|..| .+|..|+.+|...|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345444 4599999999999999999999888753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-11 Score=78.08 Aligned_cols=50 Identities=32% Similarity=0.474 Sum_probs=45.8
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD 347 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 347 (624)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-07 Score=84.31 Aligned_cols=292 Identities=10% Similarity=-0.011 Sum_probs=201.9
Q ss_pred CCcchhhHHHHHHHh--cCChHHHHHHHhhcCC-----CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHH--
Q 006955 267 SNIASWTNVIVGYFE--MGEVGSAIKVFELMTT-----RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNAT-- 337 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-- 337 (624)
++......-+.+++. .++...|...+-.+.. .|+.....+...+...|+.++|...|++.+.. .|+..+
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 333333344444433 4555555554433322 36777888889999999999999999987654 454332
Q ss_pred --HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHH
Q 006955 338 --FTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI---HDIISWNSIICGLA 412 (624)
Q Consensus 338 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 412 (624)
|..++ ...|+.+....+...+....- .+...+-.-........++..|+.+-++.+. +++..+-.-...+.
T Consensus 270 D~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 270 DLYAVLL---GQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHH---HhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH
Confidence 33333 455666666655555443221 1111111223334456788888888887763 34444544456788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH-HHhh-ccCChH
Q 006955 413 YHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV-DLLG-RFGLID 489 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~ 489 (624)
..+++++|.-.|+..+. +.|. ..+|..++.+|...|.+.+|.-.-....+. ++.+..+.+.+. ..+. .-..-+
T Consensus 346 ~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred hccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHH
Confidence 88999999999999876 5654 479999999999999999998888887764 333666665552 2232 233458
Q ss_pred HHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSP-TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
+|.+++++... +.|+. ...+.+...|...|..+.++.++++.+...| |......|+..+...+.+.+|.+.|...+
T Consensus 422 KAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 422 KAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 89999998776 67763 4666777888999999999999999999999 88999999999999999999999998877
Q ss_pred HCC
Q 006955 569 ENG 571 (624)
Q Consensus 569 ~~~ 571 (624)
..+
T Consensus 499 r~d 501 (564)
T KOG1174|consen 499 RQD 501 (564)
T ss_pred hcC
Confidence 654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-06 Score=89.35 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=144.6
Q ss_pred ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHH
Q 006955 300 VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITM 379 (624)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (624)
+..|..+..+-.+.|...+|++-|-+ .-|+..|..++..+.+.|.++.-..++..+++...+|.+. +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 46788888888888998888887754 3467789999999999999999999999988887766554 578999
Q ss_pred hHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHH
Q 006955 380 YARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
|++.+++.+.++++. .||......+.+-|...+.++.|.-+|... ..|..+...+...|+++.|...-
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888777653 445555555666666666666666555433 23445555555556666555443
Q ss_pred HHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 460 DCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+++ .+..+|..+..+|...+.+.-| +|-..++-....-+..|+..|...|-+++-+.+++..+.+...
T Consensus 1244 RKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA 1311 (1666)
T KOG0985|consen 1244 RKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA 1311 (1666)
T ss_pred hhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH
Confidence 321 2455565555555555444333 2322223334445555666666666666666666666666655
Q ss_pred CCchHHHHHHHHHhc
Q 006955 540 NSGVYLILTEMYLSC 554 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~ 554 (624)
....|..|+..|.+-
T Consensus 1312 HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1312 HMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555566666555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=100.43 Aligned_cols=187 Identities=18% Similarity=0.154 Sum_probs=99.7
Q ss_pred HHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccC
Q 006955 375 AMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAG 450 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g 450 (624)
.+...|...|+.+.|...|++.. +.++..|+.+...+...|++++|...|++..+ +.|+. .++..+..++...|
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence 34444555555555555555443 23445666666667777777777777777665 34543 45555555666667
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
++++|.+.+++..+. .|+..........+...++.++|...+.+.... ..|+...+ .+ .....|+...+ ..+
T Consensus 147 ~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~~ 218 (296)
T PRK11189 147 RYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TLM 218 (296)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HHH
Confidence 777777777766652 343222222222234456677777777554321 12222211 11 12223333332 122
Q ss_pred HHHH-------ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVM-------ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.+. ++.|..+.+|..++..+...|++++|...|++..+.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 2344455667777777777777777777777666554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-07 Score=89.32 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=58.1
Q ss_pred CCCchhHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcch
Q 006955 398 IHDIISWNS--IICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAH 474 (624)
Q Consensus 398 ~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 474 (624)
+|....|.. ++..+-..|+++.|+..++....+ .|+.. -|..=.+.+...|++++|..++++..+- -.||...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHH
Confidence 334443433 455566777777777777776653 45442 3433445566677777777777766652 1133333
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
-.--+.-..++++.++|.+++......|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 32444445566777777777766665553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.2e-08 Score=95.66 Aligned_cols=415 Identities=13% Similarity=0.046 Sum_probs=244.9
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChHHHHHHhccCCCC-----ChhHHHHHH
Q 006955 112 KDVVSWNLVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFDKMPAK-----DVQAWNLMI 183 (624)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~ 183 (624)
.++..|..+.-+..+.|++..+.+.|++...- ....|..+...|...|.-..|+.++++-..+ ++..+-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 56667777777788888888888888877652 4567777777888888888888887776533 233333333
Q ss_pred HHHHH-cCChhHHHHHHHHcccC--------CcccHHHHHHHHHc----CC-------CHHHHHHHhhhCCC---CCcch
Q 006955 184 AGYLD-NGCVGVAEDLFQKMHDR--------DLTSWKQLINGLVN----SR-------RIDAAISYFKQMPE---TCEKT 240 (624)
Q Consensus 184 ~~~~~-~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~----~~-------~~~~A~~~~~~~~~---~~~~~ 240 (624)
..|.+ -|..+++++.-.+..+. ....|..+.-+|.. .. .-.++++.+++..+ .|+..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 44443 35666666666555541 12233333333321 11 12455666666644 23333
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehh---hhhhHhhcC
Q 006955 241 WNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWN---VMIFGLGEN 313 (624)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~ 313 (624)
...+.--++-.++++.|.+..++.. ..++..|..+.-.+...+++.+|+.+.+.....-...++ .-+..-..-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 3334444556667777766666555 445666777777777777777777777665432111111 111222224
Q ss_pred CCchHHHHHHHHhHHc--CCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--hCCCCCcchhHHHHHHhH---hhCCH
Q 006955 314 DLGEEGLKFFVQMKES--GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIK--IARNQFTTVSNAMITMYA---RCGNI 386 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~---~~g~~ 386 (624)
++.++++.....+..- ...|-..+. +-....+....+.- ......+.++..+..... +.-..
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~-----------~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTL-----------DEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhh-----------hhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 5566666555554331 001100010 00000011100000 001111222222221111 11111
Q ss_pred HHHHHHhccCCCCC------chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 387 QSALLEFSSVPIHD------IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 387 ~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+..+..+.....|+ ...|......+...++.++|...+.+..+. ..-....|......+...|.+.+|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 11111112222232 134666677788899999999888888763 23333466666667788899999999999
Q ss_pred HhhhhcCCCC-CcchHHHHHHHhhccCChHHHHH--HHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 461 CMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMN--LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 461 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
.... +.| ++.+..++..++.+.|+..-|.. ++..+.+.+ +.++..|-.|...+.+.|+.+.|...|.-+.++.
T Consensus 709 ~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 709 VALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8776 678 68889999999999998888887 999998843 4468899999999999999999999999999988
Q ss_pred CCCCc
Q 006955 538 PNNSG 542 (624)
Q Consensus 538 p~~~~ 542 (624)
+.+|.
T Consensus 785 ~S~PV 789 (799)
T KOG4162|consen 785 ESNPV 789 (799)
T ss_pred cCCCc
Confidence 77664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=95.83 Aligned_cols=231 Identities=13% Similarity=0.036 Sum_probs=157.1
Q ss_pred hhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 306 MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
+..+|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+..++..|..++.+..+. .|.++....-....+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 344444444444444444443333 333334444444444444444444444433332 12222223345556666777
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
.++|.++++.+. +.++.....+...|...++++-|+..++++.+.|+ -++..|+.+.-+|.-.+++|-+..-|++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 788888777665 33555555666778888999999999999999884 46678888888999999999999999988
Q ss_pred hhhcCCCCC--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 463 KNKYFLQPR--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 463 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.... -.|+ ..+|-.+.......|++..|.+.|+-.+... ......++.|.-.-.+.|++++|..++..+....|.-
T Consensus 385 lsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 385 LSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred Hhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 7642 3343 5677788888899999999999999887642 3346688888888889999999999999999999854
Q ss_pred Cc
Q 006955 541 SG 542 (624)
Q Consensus 541 ~~ 542 (624)
..
T Consensus 463 ~E 464 (478)
T KOG1129|consen 463 AE 464 (478)
T ss_pred cc
Confidence 33
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-07 Score=94.92 Aligned_cols=168 Identities=13% Similarity=0.032 Sum_probs=111.7
Q ss_pred ChhHHHHHHhhCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHcCCChhhHHHHHhcC
Q 006955 5 RIQEAQNLFDKMPQRDT---VTWNVMIRGYFKNGFLDNAMCLFNQMPER---DMFTYNTVIAGLMQSDNVQGAKEVFDGM 78 (624)
Q Consensus 5 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 78 (624)
+...|...|=+..+.|+ ..|..|..-|+...+...|.+.|+++.+. +..+...+...|++..+++.|..+.-..
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 45556666655555444 37888888888878888899998888743 4566777788888888888888874333
Q ss_pred CCCC-----chhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhcccCChh-HHH
Q 006955 79 EVRD-----VVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGARDVA-SWT 149 (624)
Q Consensus 79 ~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 149 (624)
.+.+ ...|-.+.-.|...++...|+.-|+...+ | |...|..+..+|.+.|....|.++|.++..-++. +|.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 2211 12222344556777788888888877776 2 4456777888888888888888888777653332 222
Q ss_pred H--HHHHHHhCCChHHHHHHhccCC
Q 006955 150 I--MVNGLVREGRIVEARKLFDKMP 172 (624)
Q Consensus 150 ~--l~~~~~~~g~~~~a~~~~~~~~ 172 (624)
. ..-..+..|.+.+|+..+..+.
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 2233456777777777776665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-08 Score=81.76 Aligned_cols=192 Identities=13% Similarity=0.036 Sum_probs=151.6
Q ss_pred HHHHHhHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccC
Q 006955 375 AMITMYARCGNIQSALLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAG 450 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g 450 (624)
.|.-.|...|+...|..-+++... .+..+|..+...|.+.|..+.|.+.|++..+ +.|+. ...|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 366678888888888888888773 2445788888888889999999999998887 45654 57777888888888
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIA 529 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 529 (624)
++++|...|++........--..+|..+..+-.+.|+.+.|...|++.++ ..| .+.+...+.......|++-.|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 99999999998887643333577888888888889999999999988877 344 466777888888888999999999
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+++.....+.+...+...+++-...|+.+.+-++=.++.+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888876667888888888888889888888776665443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-06 Score=83.06 Aligned_cols=234 Identities=12% Similarity=0.090 Sum_probs=146.7
Q ss_pred CCCCcchHHHHHH--HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCC------------CCC
Q 006955 17 PQRDTVTWNVMIR--GYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME------------VRD 82 (624)
Q Consensus 17 ~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~ 82 (624)
.+-|+.+-..++. .|...|+.+.|.+..+.+. +..+|..+...|.+..+++-|.-.+-.|. +.+
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 3457777777774 4678899999988766554 44678889999988888888777776665 112
Q ss_pred chhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc-CChhHHHHHHHHHHhCCCh
Q 006955 83 VVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRI 161 (624)
Q Consensus 83 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 161 (624)
...-..........|.+++|+.+|++..+ |..|=+.|-..|.+++|.++-+.-.. .=..||..-..-+-..+|+
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccH
Confidence 13333334445677889999999988765 44455667778999999887764332 2345677777777788889
Q ss_pred HHHHHHhccCCCCChhH-----------------------HHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHH
Q 006955 162 VEARKLFDKMPAKDVQA-----------------------WNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV 218 (624)
Q Consensus 162 ~~a~~~~~~~~~~~~~~-----------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 218 (624)
+.|++.|++...+-..+ |.--....-..|+.+.|+.+|....+ |..++...+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C 949 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKC 949 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEe
Confidence 99999888765332222 22222222334455555555444322 334444445
Q ss_pred cCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhc
Q 006955 219 NSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKY 264 (624)
Q Consensus 219 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 264 (624)
-+|+.++|-++.++- .|......+.+.|-..|++.+|..+|.++
T Consensus 950 ~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555555555442 34445555666677777777777776554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-05 Score=80.62 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=119.3
Q ss_pred CCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhh
Q 006955 384 GNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMK 463 (624)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 463 (624)
+.+++|.+.-++... +..|+.+..+-.+.|...+|.+-|-+. -|+..|..++..+.+.|.+++-.+++..+.
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445555555444443 457999999999999999998877542 356789999999999999999999998877
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
++. - .+..-+.|+-+|++.++..+-.+.+ ..|+......+..-|...|.++.|.-+|... +.
T Consensus 1161 kk~-~--E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN 1222 (1666)
T KOG0985|consen 1161 KKV-R--EPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SN 1222 (1666)
T ss_pred Hhh-c--CccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hh
Confidence 652 3 3445567899999999988765544 4788888899999999999999998888654 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 006955 544 YLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
|..|+..++..|.+..|...-.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6677888888888887776443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-08 Score=90.63 Aligned_cols=222 Identities=16% Similarity=0.032 Sum_probs=152.8
Q ss_pred hcCCCchHHHHHHHHhHHcC-CCCC--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 311 GENDLGEEGLKFFVQMKESG-PSPD--NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
...++.+.++.-+.++.... ..|+ ...|......+...|+.+.|...|....+.. +.+...++.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33456677777777776542 2232 2446666667788888888888888887764 345677888899999999999
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+|...|++.. +.+..+|..+..++...|++++|.+.+++..+ ..|+..........+...++.++|...+++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999998876 33556788888889999999999999999988 466554222222234556789999999977554
Q ss_pred hcCCCCCcchHHHHHHHhhccCChHH--HHHHHHHcccCCC--Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 465 KYFLQPRSAHYTCVVDLLGRFGLIDE--AMNLLNEIRADGI--EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 465 ~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~g~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
. ..|+... ..+...+ .|+... +.+.+.+..+... .| ....|..+...+...|++++|...|+++++.+|.
T Consensus 194 ~--~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 K--LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred h--CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2 2333322 2333333 444433 3333333222211 22 2457888999999999999999999999999975
Q ss_pred C
Q 006955 540 N 540 (624)
Q Consensus 540 ~ 540 (624)
+
T Consensus 269 ~ 269 (296)
T PRK11189 269 N 269 (296)
T ss_pred h
Confidence 4
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=94.63 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=90.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh----hccC
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL----GRFG 486 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~g 486 (624)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+ +..| .+...++.++ .-.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCch
Confidence 34456666666665431 2344555556666667777777777766654 2233 2222233322 2223
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh-HHHHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR-EDAKRIFA 565 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 565 (624)
.+.+|..+|+++.+. ..+++.+++.+..++...|++++|+..++++++.+|.++.++..++-+....|+. +.+.+++.
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 577788888886653 4567777777777777788888888888888887787888888887777777777 55666777
Q ss_pred HHHHC
Q 006955 566 QMKEN 570 (624)
Q Consensus 566 ~m~~~ 570 (624)
+++..
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 66553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.8e-07 Score=87.14 Aligned_cols=420 Identities=12% Similarity=0.082 Sum_probs=226.0
Q ss_pred cCCChHHHHHHHHhcccCCh---hHHHHHHHHHHhCCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCChhHHHHHH
Q 006955 126 NCQRMDLAESYFKEMGARDV---ASWTIMVNGLVREGRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGCVGVAEDLF 199 (624)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 199 (624)
..+++....+..+.+.+..+ .+.....-.+...|+-++|......-... +.++|..+.-.+-...++++|++.|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 34556666666666554322 22222223345567777777666555533 4456777776666667777777777
Q ss_pred HHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC-----CCC
Q 006955 200 QKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP-----YSN 268 (624)
Q Consensus 200 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~ 268 (624)
+..... |...+.-+.-.-++.|+++.....-....+ | ....|..+..+..-.|+...|..+++... .++
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 776642 333455554445555666655555555544 2 22345556666666677777766666555 233
Q ss_pred cchhhHH------HHHHHhcCChHHHHHHHhhcCCC--C-ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHH
Q 006955 269 IASWTNV------IVGYFEMGEVGSAIKVFELMTTR--D-VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT 339 (624)
Q Consensus 269 ~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 339 (624)
...+... .....+.|..+.|.+.+...... | ...-.+-...+.+.++.++|..+|..++.. .||...|.
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy 256 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHH
Confidence 3332221 12344556666666666555432 1 112233344566667777777777776665 56666555
Q ss_pred HHHHHHc-CC-CCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCCh
Q 006955 340 SVLTICS-DL-PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 340 ~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (624)
..+..+. +. +.......++....+.- +... .|-.... ...--..-.
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e---------------------------~p~Rlpl----svl~~eel~ 304 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKY-PRHE---------------------------CPRRLPL----SVLNGEELK 304 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccc---------------------------cchhccH----HHhCcchhH
Confidence 4443332 11 11111112222221110 0000 0000000 000001112
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHH----hhhhcC--------C-CCCcch--HHHHHHHh
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDC----MKNKYF--------L-QPRSAH--YTCVVDLL 482 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~--------~-~p~~~~--~~~l~~~~ 482 (624)
+..-.++..+.+.|+++-...+.++-. .-...+-..++.-. +....- . +|.... +-.++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 333445555666665543333333322 11111111111111 111000 1 233333 34678888
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAK 561 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 561 (624)
-+.|+++.|...++..++ ..|+.. .|..-.+.+...|+.+.|...++++.+++-.|..+=..-++-..+..+.++|.
T Consensus 382 D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 999999999999999886 466633 55555677888999999999999999988656655557788888999999999
Q ss_pred HHHHHHHHCCCcc-----CCceeEEEEc
Q 006955 562 RIFAQMKENGVKK-----EPGCSWIQIN 584 (624)
Q Consensus 562 ~~~~~m~~~~~~~-----~~~~~~~~~~ 584 (624)
++...+.+.|..- +-.|.|..++
T Consensus 460 ~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 460 EVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 9999998877421 1336666543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.4e-07 Score=80.03 Aligned_cols=191 Identities=14% Similarity=0.066 Sum_probs=116.0
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccC---CCCCchhHHHHHHHHHHcCChHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV---PIHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
+...|+...++.....+++. .+.+...+..-..+|...|++..|+.-+... ...+.....-+-..+...|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 33444555555544444443 2344445555556666666666665444332 3445555555556666777777777
Q ss_pred HHHHHHHHCCCCCChh-hH---HHH---------HHHhcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhh
Q 006955 422 ELFERMRLTDFKPDDI-TF---VGV---------LSACSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLG 483 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~~-~~---~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~ 483 (624)
...++..+ +.|+.. .| ..+ +......++|.++.+..+...+. .|. ...+..+..++.
T Consensus 244 ~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 244 KEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeeccc
Confidence 77777666 456542 11 111 11234456677777766666653 343 223445666677
Q ss_pred ccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
..|++.+|++...+.++ +.|| ..++.--..+|.....++.|+.-|+++.+.+|+|..+
T Consensus 319 ~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred ccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 77888888888888876 5665 6677777788888888888888888888888866443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-07 Score=91.41 Aligned_cols=284 Identities=14% Similarity=0.065 Sum_probs=169.3
Q ss_pred HHHHhcCChHHHHHHHhhcCCC--C-ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc----C--
Q 006955 277 VGYFEMGEVGSAIKVFELMTTR--D-VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS----D-- 347 (624)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~-- 347 (624)
..+...|++++|++.++..... | ..........+.+.|+.++|..+|..+.+. .|+...|...+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 3445667777777777654432 3 233445556677777777777777777766 566665555544443 1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHH-HHHHhccCCCCC-chhHHHHHHHHHHcCChHHHHHHHH
Q 006955 348 LPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS-ALLEFSSVPIHD-IISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
..+.+....+++.+...- |.......+.-.+.....+.. +...+....... |.+|+.+-..|....+..-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123555566666655443 222222222222222222222 222333333222 3456666555654545555555555
Q ss_pred HHHHC----C----------CCCChh--hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCCh
Q 006955 426 RMRLT----D----------FKPDDI--TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 426 ~m~~~----g----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 488 (624)
..... | -.|... ++..+...|...|+.++|.+++++.++. .| .+..|..-.+.|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 54332 1 122222 3345566677889999999999988873 46 477888888889999999
Q ss_pred HHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCC-------CchHHHHHHHHHhcCChH
Q 006955 489 DEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELE--PNN-------SGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~ 558 (624)
.+|.+.++..... .+ |-..-+-.+..+.+.|+.++|...+....+.+ |.. .......+.+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999888873 44 44444555566788899999998888776644 211 122356677888999999
Q ss_pred HHHHHHHHHHH
Q 006955 559 DAKRIFAQMKE 569 (624)
Q Consensus 559 ~A~~~~~~m~~ 569 (624)
.|++.+....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-07 Score=90.94 Aligned_cols=128 Identities=16% Similarity=0.135 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVD 480 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 480 (624)
++.-+.+.|...|++++|++.+++.+++ .|+. ..|..-...+-+.|++++|.+.++.... +.+ |-..-+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHH
Confidence 3455677788899999999999999884 6664 5677777888999999999999998886 455 5555556777
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHH------HH--HHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPT------VW--GALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
.+.++|+.++|.+++......+..|... +| .....+|.+.|++..|.+.|..+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7889999999999999887766544221 22 3344678899999999888887776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=5e-08 Score=91.05 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=118.3
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cChH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY----AGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 452 (624)
..++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 34566778888888888776 4566677788899999999999999999987 34443 44444443322 3468
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI-KVGEIAGE 531 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~ 531 (624)
.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+..+.. +-++.++..++-++...|+. +.+.+++.
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 9999999999875 45788899999999999999999999999987643 34677888888887778877 77888999
Q ss_pred HHHccCCCCC
Q 006955 532 RVMELEPNNS 541 (624)
Q Consensus 532 ~~~~~~p~~~ 541 (624)
++....|..|
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 9999999654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-08 Score=93.86 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=160.9
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
+.|++.+|.-.|+..++.. |.+...+..|.......++-..|+..+.+.. +.|....-.|.-.|...|.-..|+.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4445555555555544432 2334445555666666666666666666554 33556666777788888888899999
Q ss_pred HHHHHHCCC-----CC---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 424 FERMRLTDF-----KP---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 424 ~~~m~~~g~-----~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
++..+.... .+ +...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++|+..|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 988765321 00 1100000 2333444566667777777766555678999999999999999999999999
Q ss_pred HHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 496 NEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 496 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.++. ++| |...|+-|...+......++|+..|.+++++.|.-..+.+.|+..|...|.|++|.+.|-+.+...
T Consensus 454 ~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 454 EAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99988 566 677999999999999999999999999999999999999999999999999999999888776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-07 Score=87.47 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=61.9
Q ss_pred HHHHcCCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCCC--C-ChhHHHHHHHHHHHcCChhHH
Q 006955 122 GALVNCQRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMPA--K-DVQAWNLMIAGYLDNGCVGVA 195 (624)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A 195 (624)
.+.+..||++.|...|.+.+. +|...|+.-..+|+..|++++|.+--.+-.+ | .+..|+.+..++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 345566777777777776664 3455666666777777777776665444432 2 445677777777777788888
Q ss_pred HHHHHHcccCCcc---cHHHHHHHH
Q 006955 196 EDLFQKMHDRDLT---SWKQLINGL 217 (624)
Q Consensus 196 ~~~~~~~~~~~~~---~~~~l~~~~ 217 (624)
+..|.+-++.++. .++.+.+++
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh
Confidence 8888777764432 445555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.3e-08 Score=94.99 Aligned_cols=171 Identities=13% Similarity=0.092 Sum_probs=87.4
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHH-----cCC-CCCH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHhC---CCCCcc
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKE-----SGP-SPDN-ATFTSVLTICSDLPTLDLGRQIHAQAIKIA---RNQFTT 371 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 371 (624)
+++.|...|.+.|++++|...++...+ .|. .|.. ..++.+...|...+.++.|..+++...+.- +.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~- 363 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN- 363 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc-
Confidence 344455555555655555555544322 121 2222 234455566677777777777776544321 11110
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CCC-hhhHHHHHH
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT----DF--KPD-DITFVGVLS 444 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~--~p~-~~~~~~ll~ 444 (624)
..-..+++.|...|...|++.+|++++++..+. +. .+. ...++.+..
T Consensus 364 --------------------------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 364 --------------------------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred --------------------------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 001124555666666666666666666655432 11 111 234555555
Q ss_pred HhcccChHHHHHHHHHHhh---hhcC-CCC-CcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 445 ACSYAGLVDQGRYYFDCMK---NKYF-LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~---~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
.|.+.+..++|.++|.+.. ...| -.| ...+|..|+.+|.+.|++++|.++.+...
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6666666665555555422 1111 112 24556677777777777777777766543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-06 Score=84.02 Aligned_cols=259 Identities=9% Similarity=-0.074 Sum_probs=153.3
Q ss_pred HhhcCCCchHHHHHHHHhHHcCCCCCH-HHHHH---HHHHHcCCCCcHHHHHHHHHHHHhCCCCC-cchhHHHHHHhHhh
Q 006955 309 GLGENDLGEEGLKFFVQMKESGPSPDN-ATFTS---VLTICSDLPTLDLGRQIHAQAIKIARNQF-TTVSNAMITMYARC 383 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 383 (624)
.+...|++++|.+.+++..+. .|+. ..+.. ........+..+.+...+.. .....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 456678888888888887765 3433 23321 11111223444444444433 1111222 22333455677888
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHhcccChHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDF-KPDD--ITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~ 457 (624)
|++++|...+++.. +.+...+..+...+...|++++|..++++...... .|+. ..+..+...+...|+.++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999988888776 44566777888888999999999999998876421 1222 234456777888999999999
Q ss_pred HHHHhhhhcCCCCCcchH-H--HHHHHhhccCChHHHHHH--H-HHcccCC-CCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 458 YFDCMKNKYFLQPRSAHY-T--CVVDLLGRFGLIDEAMNL--L-NEIRADG-IEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
++++........+..... + .+...+...|....+.++ + ....... .............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999875422111111111 1 233333444433333332 1 1111100 0111222234556677889999999999
Q ss_pred HHHHccCCC---------CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 531 ERVMELEPN---------NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 531 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.+....-. ........+.++...|++++|.+.+.+....+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887763211 23446677778889999999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-07 Score=85.57 Aligned_cols=177 Identities=14% Similarity=0.047 Sum_probs=109.5
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQ 454 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 454 (624)
+..+|.+.++.+.++..|++...+... -....+....++++...+...- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 334566667777777776664411000 0112223334455544444433 344331 11122456677888888
Q ss_pred HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 455 GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 455 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
|+..+.+++.. .| |...|....-+|.+.|.+..|++-.+..++. .|+ ...|.--..++....+++.|...|.+
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888874 35 7888888888888888888888888877763 444 33554445556667788888888888
Q ss_pred HHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 533 VMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 533 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
.++.+|.+......+.+++......+...++.
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 88888877777777777766543333333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-07 Score=80.62 Aligned_cols=148 Identities=8% Similarity=0.045 Sum_probs=118.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG 486 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 486 (624)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. .| +...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 3467888888886555433221 11 0222366778888888877763 45 8889999999999999
Q ss_pred ChHHHHHHHHHcccCCCCc-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEV-SPTVWGALLGAC-RIHNN--IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
++++|...+++... +.| ++..+..+..++ ...|+ .++|..+++++++.+|.++.++..++..+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988 455 677888888874 67777 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCC
Q 006955 563 IFAQMKENGV 572 (624)
Q Consensus 563 ~~~~m~~~~~ 572 (624)
.++++.+...
T Consensus 166 ~~~~aL~l~~ 175 (198)
T PRK10370 166 LWQKVLDLNS 175 (198)
T ss_pred HHHHHHhhCC
Confidence 9999988753
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-06 Score=85.76 Aligned_cols=435 Identities=15% Similarity=0.090 Sum_probs=228.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChHHHHHHhccCCCCCh-----hHHHHHHHHHH
Q 006955 116 SWNLVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFDKMPAKDV-----QAWNLMIAGYL 187 (624)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~l~~~~~ 187 (624)
.|..|...|....|..+|.+.|+..-+- |........+.|++..+++.|..+.-...+.++ ..|....-.|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 4555555555555666666666655542 334455556666666666666665322222211 12333444455
Q ss_pred HcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcc-hHHHHH--HHHHhcCChHHHHHHH
Q 006955 188 DNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK-TWNSII--SVLIRNGLVKEAHSYL 261 (624)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ll--~~~~~~~~~~~a~~~~ 261 (624)
+.++...|..-|+...+. |...|..+..+|...|++..|++.|.+...-++. +|.... -.-+..|.+.++...+
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 566666666666666553 3335556666666666666666666555442222 222211 1223455555655555
Q ss_pred hhcC----------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC-----------CCceehhhhhhHhhcCCCchHHH
Q 006955 262 EKYP----------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT-----------RDVTVWNVMIFGLGENDLGEEGL 320 (624)
Q Consensus 262 ~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~ 320 (624)
..+. ..-..++..+...+...|-..+|..+|++..+ .+...|-.+- .|.
T Consensus 654 ~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------dac 723 (1238)
T KOG1127|consen 654 GLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------DAC 723 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------HHH
Confidence 4444 00111111122222222222223333322111 1111222111 222
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCc---H---HHHHHHHHHHHhCCCCCcchhHHHHHHhH---hhC----CHH
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTL---D---LGRQIHAQAIKIARNQFTTVSNAMITMYA---RCG----NIQ 387 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g----~~~ 387 (624)
.+|-+.. .. .|+.....++..-....+.. + .+.+.+-.-.+.-. .....||.-++.|. ..| +..
T Consensus 724 ~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 724 YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 2333222 11 23322222222212222221 1 11111111111111 12223343333322 111 223
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
.|+..+.+.. ..+...||.|.-. ...|++.-+...|-+-... .+.+..+|..+.-.+.+..+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 5666666544 4566778877655 6667888888877776653 233446888888888999999999999998876
Q ss_pred hcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHc----ccCCCCcCHHHHHHHHHHHHhcCChHHHH----------HH
Q 006955 465 KYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEI----RADGIEVSPTVWGALLGACRIHNNIKVGE----------IA 529 (624)
Q Consensus 465 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~~~l~~~~~~~g~~~~a~----------~~ 529 (624)
+.| +...|-.........|+.-++..+|..- ...|-.|+...|.........+|+.+.-+ -.
T Consensus 879 ---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 879 ---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred ---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 567 6777766666667789888888888761 22344566666655555555666655443 44
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.++.....|....+|...+....+.+.+++|.+...+..
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 555566789888999999999999999999998777653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-06 Score=75.06 Aligned_cols=302 Identities=10% Similarity=0.031 Sum_probs=186.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHH---HHHHcCCCHHHHHHHhhhCCC--CCcch-HHHHHHHHHhcCC
Q 006955 180 NLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLI---NGLVNSRRIDAAISYFKQMPE--TCEKT-WNSIISVLIRNGL 253 (624)
Q Consensus 180 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~ 253 (624)
.-+...+..+|++.+|+.-|...++.|+..|-++. ..|...|+...|+.=+....+ ||-.. ...-...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34566666677777777777777776666655554 356666666666655555543 43221 1112234555666
Q ss_pred hHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCC
Q 006955 254 VKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333 (624)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 333 (624)
++.|..-|+.+...++.- +....++.+.-..++-. .....+..+...|+...|++....+++. .+.
T Consensus 122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~W 187 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITHLLEI-QPW 187 (504)
T ss_pred HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccc
Confidence 666665555554222110 00000111110011100 1122345566678888888888888775 255
Q ss_pred CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCch----hHHHH
Q 006955 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDII----SWNSI 407 (624)
Q Consensus 334 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l 407 (624)
|...|..-..+|...|.+..|+.-++.+.+.....+...| .+-..+-..|+.+.++..+.+..+ ||-. .|-.+
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y-kis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY-KISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH-HHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 6666666777788888888888877777665544333333 466677778888888777776553 3221 12111
Q ss_pred ---------HHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-Cc
Q 006955 408 ---------ICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RS 472 (624)
Q Consensus 408 ---------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~ 472 (624)
+......++|.++++..+...+. .|.. ..+..+-.++...|++.+|++.-.++.. +.| |+
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv 341 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHH
Confidence 12345678888888888888774 4442 2444556677888999999999999886 567 58
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccC
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (624)
.++---..+|.-..+++.|+.-|+...+.
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888889999999999999999999873
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-05 Score=71.21 Aligned_cols=405 Identities=13% Similarity=0.122 Sum_probs=242.9
Q ss_pred HHHHHHHHHhCCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcc--cHH-HHHHHHHcCC
Q 006955 148 WTIMVNGLVREGRIVEARKLFDKMPAK---DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT--SWK-QLINGLVNSR 221 (624)
Q Consensus 148 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~-~l~~~~~~~~ 221 (624)
+++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|...++++-..-+. -|. .-.+.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 566777778889999999998776654 4456777888899999999999999998653222 222 2346677889
Q ss_pred CHHHHHHHhhhCCCC-CcchHHHHH--HHHHhcCChHHHHHHHhhcC-CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 222 RIDAAISYFKQMPET-CEKTWNSII--SVLIRNGLVKEAHSYLEKYP-YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 222 ~~~~A~~~~~~~~~~-~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
.+.+|+.+...|.+. +...-..-+ ....+.+++..+..++++.. ..+..+.+...-...+.|+.+.|.+-|+...+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 999999999999773 222222222 23446788888888888877 46666777777777788888888888887765
Q ss_pred C----CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcch
Q 006955 298 R----DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT-SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTV 372 (624)
Q Consensus 298 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (624)
- ....||..+ ++.+.++++.|++...++.+.|++-.+..-. ....+ .....+.....+..... +..
T Consensus 173 vsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-------~eA 243 (459)
T KOG4340|consen 173 VSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-------VEA 243 (459)
T ss_pred hcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH-------HHH
Confidence 3 334455443 4556788888888888888888653221100 00000 00000000000000000 112
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCC-----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIH-----DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACS 447 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 447 (624)
+|.-...+.+.|+.+.|.+.+..|+++ |++|...+.-. -..+++-+..+-++-+.+.+ +-...||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 233344567889999999999999843 66666554322 22345555555566666542 234478999999999
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH--HHhcCC---
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA--CRIHNN--- 522 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~--- 522 (624)
+..-++.|-.++.+-....-.-.++..|+.|=......-..++|.+-+..+... .....-...+.. -...++
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHH
Confidence 999999988887653321000113444543333333445677777666554421 111111111211 111222
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 523 IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
...+.+-+++.+++.- .+...-++.|....++..+.++|..-.+
T Consensus 399 ~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2334445555555431 2566777888899999999999875443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.4e-07 Score=82.13 Aligned_cols=59 Identities=20% Similarity=0.117 Sum_probs=51.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+...+...|++..|...++++++..|++ +..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44566788999999999999999987754 468999999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-07 Score=76.48 Aligned_cols=105 Identities=10% Similarity=-0.055 Sum_probs=53.4
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (624)
...++...|++++|...|+.+.. +.| +...+..+..++.+.|++++|+..|++..+.. +.++..+..+..++...
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 34444555555555555555544 223 44455555555555555555555555555421 22344555555555555
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
|++++|...++++++..|.++..+...+.+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555555555555555555555444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-07 Score=76.69 Aligned_cols=109 Identities=10% Similarity=-0.059 Sum_probs=93.5
Q ss_pred HHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 457 YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
.++++..+ +.|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+++.++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34455444 3454 35567888899999999999999988742 346789999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 537 EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 537 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+|.++..+..++.++...|++++|.+.+++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999987764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-05 Score=87.24 Aligned_cols=358 Identities=12% Similarity=0.002 Sum_probs=215.8
Q ss_pred HHHHHcCCCHHHHHHHhhhCCCCCcc--hHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhcCChHH
Q 006955 214 INGLVNSRRIDAAISYFKQMPETCEK--TWNSIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEMGEVGS 287 (624)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 287 (624)
...+...|++.+|............. ............|+...+...+..+. ..++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 33455566666666655555432211 11122234455677777777776653 2233334445556667888888
Q ss_pred HHHHHhhcCC----CC---c-----eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH----HHHHHHHHHHcCCCCc
Q 006955 288 AIKVFELMTT----RD---V-----TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN----ATFTSVLTICSDLPTL 351 (624)
Q Consensus 288 A~~~~~~~~~----~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~ 351 (624)
+...+..... .+ . .....+...+...|++++|...+++....-...+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 8887765532 11 1 11112233456788999999999887653111121 2334455566778999
Q ss_pred HHHHHHHHHHHHhCCCCC-----cchhHHHHHHhHhhCCHHHHHHHhccCC-------CCC----chhHHHHHHHHHHcC
Q 006955 352 DLGRQIHAQAIKIARNQF-----TTVSNAMITMYARCGNIQSALLEFSSVP-------IHD----IISWNSIICGLAYHG 415 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~ 415 (624)
+.|...+........... ......+...+...|+++.|...+++.. .++ ...+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999988887765322111 2233456667788899999988776643 111 123444555667789
Q ss_pred ChHHHHHHHHHHHHC--CCCCC--hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-----HHHHHHhhccC
Q 006955 416 YAEKALELFERMRLT--DFKPD--DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-----TCVVDLLGRFG 486 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g 486 (624)
++++|...+++.... ...+. ...+..+.......|+.+.|...++.+............+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999998887652 11222 2234445556778899999999888875421111111111 11224445678
Q ss_pred ChHHHHHHHHHcccCCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHHHHccCC------CCCchHHHHHHHHHhcCCh
Q 006955 487 LIDEAMNLLNEIRADGIEVSP---TVWGALLGACRIHNNIKVGEIAGERVMELEP------NNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~ 557 (624)
+.+.|.+++.+.......... ..+..+..++...|+.++|...++++..... ....+...++.++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 999999998876642211111 1134556667888999999999998887421 1234577888889999999
Q ss_pred HHHHHHHHHHHHCC
Q 006955 558 EDAKRIFAQMKENG 571 (624)
Q Consensus 558 ~~A~~~~~~m~~~~ 571 (624)
++|...+.+..+..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-06 Score=74.43 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=180.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCchhHHH-HHHHHHhCC
Q 006955 24 WNVMIRGYFKNGFLDNAMCLFNQMPER---DMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDVVTWNS-MISGYVCNG 97 (624)
Q Consensus 24 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~g 97 (624)
+++.+..+.+..++++|++++..-.+. +....+.|..+|....++..|-.+++.+- .|...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 555666667777888898888777643 44567777778888888889989888876 344333322 234455678
Q ss_pred ChhHHHHHhccCCC-CCcccHHHHHHHHH--cCCChHHHHHHHHhccc-CChhHHHHHHHHHHhCCChHHHHHHhccCCC
Q 006955 98 LIDEALRVFHGMPL-KDVVSWNLVIGALV--NCQRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMPA 173 (624)
Q Consensus 98 ~~~~a~~~~~~~~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 173 (624)
.+..|+++...|.. |+...-..-+.+.. ..+|+..+..+.++... .+..+.+.......+.|+++.|++-|+...+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 88888888888875 44433333333333 56888888888888874 5666666666666788999999999888774
Q ss_pred C----ChhHHHHHHHHHHHcCChhHHHHHHHHcccC-----------------Ccc---------------cHHHHHHHH
Q 006955 174 K----DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR-----------------DLT---------------SWKQLINGL 217 (624)
Q Consensus 174 ~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------~~~---------------~~~~l~~~~ 217 (624)
- ....|+. ..++.+.|+++.|++...+++++ |+. .+|.=...+
T Consensus 173 vsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 173 VSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 3 3344544 44556778899999888887653 111 122223345
Q ss_pred HcCCCHHHHHHHhhhCCC-----CCcchHHHHHHHHH--hcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHH
Q 006955 218 VNSRRIDAAISYFKQMPE-----TCEKTWNSIISVLI--RNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIK 290 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (624)
.+.|+++.|.+.+-.|.. .|+.|...+.-.-. +-++--.-.+++-...|-...+|..++-.||+..-++.|-.
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence 678888888888888874 46666655433222 22332333344444445566788888888888888888888
Q ss_pred HHhhcCC
Q 006955 291 VFELMTT 297 (624)
Q Consensus 291 ~~~~~~~ 297 (624)
++.+-..
T Consensus 332 vLAEn~~ 338 (459)
T KOG4340|consen 332 VLAENAH 338 (459)
T ss_pred HHhhCcc
Confidence 8766544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-05 Score=74.51 Aligned_cols=267 Identities=10% Similarity=0.008 Sum_probs=165.2
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcC-CCCCHHHHH-HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhH---HH
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESG-PSPDNATFT-SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSN---AM 376 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l 376 (624)
.|..+...+...++.+.+...+....... ..++..... .....+...|+++.+..+++...+.. |.+...+. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 34455555666677777666666654432 123332222 22334567899999999999988864 33333333 12
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHD---IISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 452 (624)
.......+..+.+.+.+......+ ......+...+...|++++|...+++..+. .|+ ...+..+...+...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCH
Confidence 222223456666666666533222 234445566788999999999999999984 455 45677778889999999
Q ss_pred HHHHHHHHHhhhhcCCCCCc--chHHHHHHHhhccCChHHHHHHHHHcccCCC-CcCHHHH-H--HHHHHHHhcCChHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRS--AHYTCVVDLLGRFGLIDEAMNLLNEIRADGI-EVSPTVW-G--ALLGACRIHNNIKVG 526 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~-~--~l~~~~~~~g~~~~a 526 (624)
++|..++++........|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999988742112222 3455788899999999999999999764321 1122111 1 233334455544444
Q ss_pred HHH---HHHHHccCCCC--CchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 527 EIA---GERVMELEPNN--SGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 527 ~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+. ........|.. +..-.+.+.++...|+.++|..+++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333 12211111211 2223367778889999999999999987654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-06 Score=73.07 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=109.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc
Q 006955 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR 484 (624)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 484 (624)
..+-..+...|+-+....+....... ..-+.......+....+.|++..|...+.++... -+||...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHH
Confidence 44455566667666666666664431 1223334445667777778888888888877762 23477788888888888
Q ss_pred cCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
.|++++|..-|.+..+ +.| ++..++.+...+...||.+.|+.++..+....+.|+.+-..|..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 8888888888887776 444 5667777777777888888888888888777777777788888888888888888776
Q ss_pred HH
Q 006955 564 FA 565 (624)
Q Consensus 564 ~~ 565 (624)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 54
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-06 Score=74.05 Aligned_cols=155 Identities=10% Similarity=0.070 Sum_probs=116.2
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGR 456 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 456 (624)
+..|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777655543332221 01122566678888888877742 445578888888999999999999
Q ss_pred HHHHHhhhhcCCCC-CcchHHHHHHHh-hccCC--hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 006955 457 YYFDCMKNKYFLQP-RSAHYTCVVDLL-GRFGL--IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 457 ~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
..+++..+ +.| +...+..+..++ ...|+ .++|.+++++..+. .| ++..+..+...+...|++++|+..++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999887 456 788888888864 67777 59999999999884 45 67788888889999999999999999
Q ss_pred HHHccCCCCCchHH
Q 006955 532 RVMELEPNNSGVYL 545 (624)
Q Consensus 532 ~~~~~~p~~~~~~~ 545 (624)
++++..|++..-+.
T Consensus 169 ~aL~l~~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHhhCCCCccHHH
Confidence 99999987665543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-05 Score=84.24 Aligned_cols=222 Identities=9% Similarity=0.017 Sum_probs=153.6
Q ss_pred HHHHHHHHHcCCCCcHHH-HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHH
Q 006955 337 TFTSVLTICSDLPTLDLG-RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLA 412 (624)
Q Consensus 337 ~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 412 (624)
....+=.+.+..|..+++ .++++++.+ ++....+.....+++.-..... ..++..+..|.....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALE 97 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333344455666766655 445555544 3333333333333322222211 335777888888999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHH
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 490 (624)
+.|.+++|+.+++...+ +.|+.. ....+...+.+.+++++|....++... ..| +......+..++.+.|++++
T Consensus 98 ~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHH
Confidence 99999999999999998 688764 667778889999999999999999887 356 67777888899999999999
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|..+|+++...+ +-++.++..+..++...|+.+.|...|+++++...+-...|..+. ++...-..+++++.-.
T Consensus 173 A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 173 ADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCcc
Confidence 999999998732 334789999999999999999999999999987654555555443 3444445566665444
Q ss_pred CCccCCceeEEE
Q 006955 571 GVKKEPGCSWIQ 582 (624)
Q Consensus 571 ~~~~~~~~~~~~ 582 (624)
+.....+.+.+.
T Consensus 246 ~~~~~~~~~~~~ 257 (694)
T PRK15179 246 GDGRDVPVSILV 257 (694)
T ss_pred cccCCCceeeee
Confidence 443333334333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.1e-06 Score=87.86 Aligned_cols=200 Identities=13% Similarity=0.081 Sum_probs=153.4
Q ss_pred CCcchhHHHHHHhHhhCCHHHHHHHhccCCCC--------CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 006955 368 QFTTVSNAMITMYARCGNIQSALLEFSSVPIH--------DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITF 439 (624)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 439 (624)
.+...+-..|..+...++.++|.++.++..+. -...|.++++.-...|.-+...++|+++.+. --....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 33444555666667777777777777766511 2346888888777778788888889888873 3334577
Q ss_pred HHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC---HHHHHHHHHH
Q 006955 440 VGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS---PTVWGALLGA 516 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~ 516 (624)
..|...|.+.+..++|.++++.|.++++ -....|..++..+.+.++-+.|..++.++.+. -|. .....-.++.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 7888888888999999999999988754 56778888888889999889999999887763 343 3344555566
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
-.+.||.+++..+|+..+.-.|.....|..+++.-.++|+.+.+..+|++....+++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 678899999999999999888888888999999999999999999999988887653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-06 Score=81.37 Aligned_cols=256 Identities=13% Similarity=0.103 Sum_probs=170.2
Q ss_pred HHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCCCc
Q 006955 276 IVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLPTL 351 (624)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 351 (624)
..-+.+.|++.+|.-.|+...+. +...|.-|......+++-..|+..+++-.+. .|+. ...-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH
Confidence 33456777788887777776654 4456777777777777777777777776654 4543 3444555556666666
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH-HHC
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERM-RLT 430 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m-~~~ 430 (624)
..|...+...+...++-- + +. ...++...-+. ..+..........++|-++ .+.
T Consensus 370 ~~Al~~L~~Wi~~~p~y~---~--l~------------------~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYV---H--LV------------------SAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHHHHhCccch---h--cc------------------ccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence 666666665555432210 0 00 00000000000 0111111233444444444 445
Q ss_pred CCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HH
Q 006955 431 DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PT 508 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~ 508 (624)
+..+|......|.-.|.-.|++++|+..|+.+.. ++| |...||.|...++-..+.++|+..|+++++ ++|. ..
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR 499 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVR 499 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeee
Confidence 5456777777777778889999999999999987 568 789999999999999999999999999998 7887 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC-----CC-----chHHHHHHHHHhcCChHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPN-----NS-----GVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~-----~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
++..|.-+|...|.+++|...|-.++.+.+. .. .++..|=.++...++.|-+.++
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8888999999999999999999999886654 11 3566666667777776644443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=72.11 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=81.5
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
..| +......+...+...|++++|.+.++.+...+ +.++..|..+...+...|+++.|...++++.+..|.++..+..
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 345 44556667777888888888888888877643 3467777888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|...+++..+..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 8888888888888888888776653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-06 Score=83.05 Aligned_cols=212 Identities=11% Similarity=-0.008 Sum_probs=157.9
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCCh
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 417 (624)
.+...+...|-...|..++..... +.-.+.+|...|+..+|..+..+.. +|++..|..+.+......-+
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 344455566666667666665432 2346777777787777776665443 56777777777776666667
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHH
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
++|.++.+.--.. .-..+.....+.++++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|.
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 7777777654321 111222223446888888888888776 445 67788888888889999999999999
Q ss_pred HcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 497 EIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 497 ~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
.... ..|| ...|+.+-.+|.+.|+-.+|...+.++.+.+-.+..++...+-..+.-|.+++|.+.+.++.+...
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9887 5775 569999999999999999999999999998877888888888899999999999999999876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.3e-05 Score=83.57 Aligned_cols=355 Identities=10% Similarity=-0.044 Sum_probs=221.7
Q ss_pred HHHHHHcCChhHHHHHHHHcccCCccc--HHHHHHHHHcCCCHHHHHHHhhhCCC----CCcchHHHHHHHHHhcCChHH
Q 006955 183 IAGYLDNGCVGVAEDLFQKMHDRDLTS--WKQLINGLVNSRRIDAAISYFKQMPE----TCEKTWNSIISVLIRNGLVKE 256 (624)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~ 256 (624)
...+...|++.+|..........+... ...........|+++.+..++..+.. .++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344555666666666555554332111 12223345567888888888877642 233333444556677889999
Q ss_pred HHHHHhhcC----CCC---c-----chhhHHHHHHHhcCChHHHHHHHhhcCC--C--Cc----eehhhhhhHhhcCCCc
Q 006955 257 AHSYLEKYP----YSN---I-----ASWTNVIVGYFEMGEVGSAIKVFELMTT--R--DV----TVWNVMIFGLGENDLG 316 (624)
Q Consensus 257 a~~~~~~~~----~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~ 316 (624)
+...+..+. ..+ . .....+...+...|++++|...++.... + +. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 888877654 111 1 1122233456678999999998887643 1 21 2345556667889999
Q ss_pred hHHHHHHHHhHHcCC---CC--CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCC---CcchhHHHHHHhHhhC
Q 006955 317 EEGLKFFVQMKESGP---SP--DNATFTSVLTICSDLPTLDLGRQIHAQAIKI----ARNQ---FTTVSNAMITMYARCG 384 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g 384 (624)
++|...+.+.....- .+ ...++..+...+...|+++.|...+.+.... +... ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988764311 11 1234455566778899999999998876553 2211 1223445566777889
Q ss_pred CHHHHHHHhccCCC------C--CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhhH-----HHHHHHhcccC
Q 006955 385 NIQSALLEFSSVPI------H--DIISWNSIICGLAYHGYAEKALELFERMRLTDFK-PDDITF-----VGVLSACSYAG 450 (624)
Q Consensus 385 ~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~-----~~ll~~~~~~g 450 (624)
++++|...+++... + ....+..+...+...|+++.|...+.+.....-. .....+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999888876641 1 1233444566778899999999999887552111 111111 11123345578
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcc----hHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcC
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSA----HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWGALLGACRIHN 521 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g 521 (624)
+.+.|.+++....... ..... .+..+..++...|+.++|...+++..+. |..++ ..+...+..++...|
T Consensus 668 ~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 668 DKEAAANWLRQAPKPE--FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CHHHHHHHHHhcCCCC--CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 9999999987755421 11111 1346777888999999999999987653 32222 235556667788999
Q ss_pred ChHHHHHHHHHHHccCCC
Q 006955 522 NIKVGEIAGERVMELEPN 539 (624)
Q Consensus 522 ~~~~a~~~~~~~~~~~p~ 539 (624)
+.++|...+.+++++...
T Consensus 746 ~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 746 RKSEAQRVLLEALKLANR 763 (903)
T ss_pred CHHHHHHHHHHHHHHhCc
Confidence 999999999999996643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00037 Score=67.52 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=89.1
Q ss_pred CchHHHHHHHHhHHcC-CCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC-CcchhHHHHHHhHhhCCHHHHHHH
Q 006955 315 LGEEGLKFFVQMKESG-PSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ-FTTVSNAMITMYARCGNIQSALLE 392 (624)
Q Consensus 315 ~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 392 (624)
+.+.....++++...- +.|+ .+|...++...+..-+..|+.+|.++.+.+..+ ++.++++++..||. ++..-|..+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 3555556666554432 2333 345566666666667777777777777766555 66666666666653 455666666
Q ss_pred hccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhh
Q 006955 393 FSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 393 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
|+.-. ..++.--...+..+...++-..+..+|++....++.|+. ..|..++.--+.-|++..+.++-++....
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66443 223333444555566666666677777776666555554 46666666666667766666666655544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-05 Score=73.95 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=79.8
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 523 (624)
+...|..+.|+..++.+.+. .| |+..+....+.+.+.|+.++|.+.++++.. ..|+ +..+-.+..++.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCCh
Confidence 44567777777777776663 24 555566667777777777777777777776 4555 55666677777777777
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.+|+..+......+|+||..|..|+.+|...|+..++.....++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777777777666655555444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=79.82 Aligned_cols=232 Identities=10% Similarity=0.061 Sum_probs=173.4
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 346 (624)
|--..-..+...+.+.|-...|..+|+++ ..|...+.+|...|+..+|..+..+..+. +||+.-|..+.....
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33334456778889999999999999865 46788899999999999999999887773 888899988888887
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
...-+++|.++.+..... .-..+.......++++++.+.|+.-. +-...+|..+..+..+.++++.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 777788888887754332 11112222334678888888887654 33456788888888888999999999
Q ss_pred HHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 424 FERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 424 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
|..... ..|+. ..|+.+-.+|.+.|+..+|...+++..+-. .-+...|...+-....-|.+++|++.+.++.+..
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 988877 57765 689999999999999999999999888742 3456677777778888899999999988876532
Q ss_pred C-CcCHHHHHHHHHH
Q 006955 503 I-EVSPTVWGALLGA 516 (624)
Q Consensus 503 ~-~p~~~~~~~l~~~ 516 (624)
. .-|+.+...++..
T Consensus 618 ~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRT 632 (777)
T ss_pred hhcccchhhHHHHHH
Confidence 1 1245555555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-07 Score=53.80 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=20.7
Q ss_pred CCCCCcchHHHHHHHhhccCChHHHHHHHHHc
Q 006955 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 467 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=70.45 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=114.6
Q ss_pred HHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH
Q 006955 376 MITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 452 (624)
+-..+...|+-+....+..+.. ..|.......+....+.|++..|+..+++.... -+||..+|+.+.-+|.+.|++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 3444445555555555555433 234445566777888889999999999888774 255667888888889999999
Q ss_pred HHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
+.|..-+.+..+ +.| ++..++.+...|.-.|+.+.|..++......+ .-|..+-..|..+....|+++.|+.+..
T Consensus 151 ~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 151 DEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999988888887 445 67788888888888999999999988887643 3367778888888888999999888766
Q ss_pred HHH
Q 006955 532 RVM 534 (624)
Q Consensus 532 ~~~ 534 (624)
.-+
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-05 Score=70.82 Aligned_cols=163 Identities=11% Similarity=0.034 Sum_probs=105.4
Q ss_pred CHHHHHHHhccCC---CCCchhHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHH
Q 006955 385 NIQSALLEFSSVP---IHDIISWNSIICGLAYHGYA--EKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
++++++..++++. +.+..+|+.-...+.+.|+. ++++.+++++.+. .| |..+|.....++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3566666665554 33444566555455555542 5677777777763 44 446777777777777888888888
Q ss_pred HHHhhhhcCCCC-CcchHHHHHHHhhcc---CC----hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc----CChHH
Q 006955 459 FDCMKNKYFLQP-RSAHYTCVVDLLGRF---GL----IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH----NNIKV 525 (624)
Q Consensus 459 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----g~~~~ 525 (624)
++++.+. .| |...|+....++.+. |. .+++++...+++. ..| +...|+-+...+... +...+
T Consensus 165 ~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 165 CHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 8888763 34 666666655555443 22 2456666666665 344 566777777777652 34466
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
|...+.++...+|.++.++..|+..|...
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 88888888888888888888888888764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.5e-05 Score=83.37 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=95.1
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHH
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD---ITFVGVLSA 445 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~ 445 (624)
+|..|...|.+.++.++|.++++.|. ......|...+..+.++++-++|..++.+..+. -|.. ....-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 34445555555555555555555554 224456777777777777777777777777663 4442 223333344
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCC
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNN 522 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~ 522 (624)
-.+.|+.++++.+|+.....+ | ....|+.+++.-.+.|+.+.+..+|++....++.|- ...|.-.+..-..+||
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay---PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY---PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC---ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 456677777777777777643 4 566777777777777777777777777777666653 2244444444445565
Q ss_pred hHHHHHHHHHHHc
Q 006955 523 IKVGEIAGERVME 535 (624)
Q Consensus 523 ~~~a~~~~~~~~~ 535 (624)
-+.++.+-.++.+
T Consensus 1687 e~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKE 1699 (1710)
T ss_pred hhhHHHHHHHHHH
Confidence 5555544444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-05 Score=74.18 Aligned_cols=186 Identities=10% Similarity=0.071 Sum_probs=135.5
Q ss_pred hHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccCh--H
Q 006955 380 YARCGNIQSALLEFSSVPI---HDIISWNSIICGLAYHG-YAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGL--V 452 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~--~ 452 (624)
+...++.++|+.+.+++.. .+..+|+.-..++...| ++++++..++++.+. .|+ ..+|+.-...+.+.|+ .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 3345566777777776662 24446666666666667 679999999999885 443 3466655444555555 3
Q ss_pred HHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CCh----H
Q 006955 453 DQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH---NNI----K 524 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~----~ 524 (624)
+++..+++++.+ ..| |..+|+....++...|+++++++.++++++.+ .-+...|+....+.... |.. +
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHH
Confidence 677888888886 456 78889999999999999999999999999854 33566777666655443 222 5
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhc----CChHHHHHHHHHHHHCC
Q 006955 525 VGEIAGERVMELEPNNSGVYLILTEMYLSC----GRREDAKRIFAQMKENG 571 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~ 571 (624)
.+..+..+++..+|.|...+..+..++... ++..+|.+...+....+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 678888899999999999999999999883 45577888887766544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=64.62 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=69.6
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cChH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY----AGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 452 (624)
...|...|++++|++...... +......=+..+.+..+.+-|.+.+++|.+ --+..|.+-|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 334555555555555555422 111222222334455556666666666654 2233444434333322 2345
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN-NIKVGEIAGE 531 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~ 531 (624)
..|.-+|+++.++ ..|++.+.+....++...|++++|..++++..... .-++.++..++-.....| +.+...+...
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5555555555543 33455555555555555555555555555554432 223444433333332332 2233334444
Q ss_pred HHHccCC
Q 006955 532 RVMELEP 538 (624)
Q Consensus 532 ~~~~~~p 538 (624)
++....|
T Consensus 267 QLk~~~p 273 (299)
T KOG3081|consen 267 QLKLSHP 273 (299)
T ss_pred HHHhcCC
Confidence 4444444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=73.19 Aligned_cols=159 Identities=12% Similarity=0.034 Sum_probs=99.3
Q ss_pred HHHHHhHhhCCHHHHHHHhccCC--CC-Cc---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHHH
Q 006955 375 AMITMYARCGNIQSALLEFSSVP--IH-DI---ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI----TFVGVLS 444 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~--~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~ 444 (624)
.+...+...|+++.|...|+++. .| ++ .++..+..++...|++++|...++++.+. .|+.. ++..+..
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~g~ 115 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYLRGL 115 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHHHHH
Confidence 34445555566666666655544 11 11 24455566666667777777777766653 33222 2333333
Q ss_pred Hhccc--------ChHHHHHHHHHHhhhhcCCCCCc-chH-----------------HHHHHHhhccCChHHHHHHHHHc
Q 006955 445 ACSYA--------GLVDQGRYYFDCMKNKYFLQPRS-AHY-----------------TCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 445 ~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
++... |+.+.|.+.++.+.+.+ |+. ..+ ..+...|.+.|++.+|+..+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33332 56667777777766532 422 111 24566788899999999999998
Q ss_pred ccCCC-Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 499 RADGI-EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 499 ~~~g~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
.+..- .| .+..+..+..++...|++++|..+++.+....|
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 76420 12 356888999999999999999999988877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-05 Score=67.07 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=54.5
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE 527 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 527 (624)
..|++++|.++++.+.++. +.|..++..-+-..-..|+.-+|++-+.+..+. +..|...|.-|...|...|++++|.
T Consensus 98 a~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 3444555555555544431 113334443333344444444444444444432 3344455555555555555555555
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 006955 528 IAGERVMELEPNNSGVYLILTEMYLSCG---RREDAKRIFAQMKEN 570 (624)
Q Consensus 528 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 570 (624)
-.+++++-.+|.++..+..++..+.-.| +.+-|.+++.+..+.
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555554444332 233444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=6e-07 Score=52.85 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=25.4
Q ss_pred CCCCCChhhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 430 TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 430 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
+|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777778888888888888888887777776
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7e-06 Score=66.98 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=85.6
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
....-.+...+...|++++|.++|+-... +.| +..-|-.|..+|...|++++|+..|.++..++|++|..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34444566667789999999999999876 556 567888999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+...|+.+.|.+.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999876653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-06 Score=78.29 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=102.7
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACR 518 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (624)
...++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|++++++..... +.+...+......+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345666677788999999999998874 244 45568888888889999999999988632 336666676677788
Q ss_pred hcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
..++++.|..+.+++.+..|.+..+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.7e-05 Score=79.50 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.++..+-..|...++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 344445555666667777777777777777777666666666665
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-05 Score=66.75 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=124.4
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC
Q 006955 414 HGYAEKALELFERMRL---TD-FKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL 487 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~---~g-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 487 (624)
..++++.++++.++.. .| ..|+.. .+..++-+....|+.+.|...++.+...+ | +...-..-.-.+...|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhc
Confidence 4578888888888764 34 556664 45566667778899999999999998863 5 33333333445567899
Q ss_pred hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+++|+++++..++.. +.|..++.--+......|+.-+|++.+...++..|.|+..|..|+..|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999999864 4467777777778888999999999999999999999999999999999999999999999999
Q ss_pred HHCC
Q 006955 568 KENG 571 (624)
Q Consensus 568 ~~~~ 571 (624)
.=..
T Consensus 181 ll~~ 184 (289)
T KOG3060|consen 181 LLIQ 184 (289)
T ss_pred HHcC
Confidence 7654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.01 Score=61.54 Aligned_cols=535 Identities=12% Similarity=0.056 Sum_probs=241.4
Q ss_pred HhcCChHHHHHHHhhCCCCCc-chHHHHHHHH--HcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHH
Q 006955 32 FKNGFLDNAMCLFNQMPERDM-FTYNTVIAGL--MQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRV 105 (624)
Q Consensus 32 ~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~--~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~ 105 (624)
...+++.+|+....+..+..+ ..|..++.++ .+.|+.++|..+++... ..|..|...+-.+|...|+.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 345677777777777763222 2344455554 47788888888888665 34777888888888888888888888
Q ss_pred hccCCC--CCcccHHHHHHHHHcCCChHH----HHHHHHhcccCChhHHHHHHHHHHhC-CCh---------HHHHHHhc
Q 006955 106 FHGMPL--KDVVSWNLVIGALVNCQRMDL----AESYFKEMGARDVASWTIMVNGLVRE-GRI---------VEARKLFD 169 (624)
Q Consensus 106 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~---------~~a~~~~~ 169 (624)
|++..+ |+......+..+|+|.+++.+ |.++++...+ ++..+=++++.+... ... .-|.+.++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888876 665556666777777766654 4445543332 233332333332221 111 11333333
Q ss_pred cCCCCC-----hhHHHHHHHHHHHcCChhHHHHHHH-Hccc----CCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcc
Q 006955 170 KMPAKD-----VQAWNLMIAGYLDNGCVGVAEDLFQ-KMHD----RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK 239 (624)
Q Consensus 170 ~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 239 (624)
.+.+.+ ..-.......+...|++++|..++. ...+ .+...-+--+..+...++|.+-.++..++...+..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 333222 1111111223344566666666662 2211 12222233344555555665555555444432111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC-CceehhhhhhHhh---cCCC
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR-DVTVWNVMIFGLG---ENDL 315 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~ 315 (624)
-|....+.. .++++..-.+.... .+...+..+...+..++.... .--.|-+-+..+. .-|+
T Consensus 259 dy~~~~~sv---------~klLe~~~~~~a~~------~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 259 DYKIYTDSV---------FKLLELLNKEPAEA------AHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred chHHHHHHH---------HHHHHhcccccchh------hhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCC
Confidence 122222211 11111110011110 111122233333332222211 1122333333322 3466
Q ss_pred chHHHHHHHHhHHcCCCC-------------CHHHHHHHHHHHcCC-CCcHHHHHHHHHHH-------HhCC--CCCcch
Q 006955 316 GEEGLKFFVQMKESGPSP-------------DNATFTSVLTICSDL-PTLDLGRQIHAQAI-------KIAR--NQFTTV 372 (624)
Q Consensus 316 ~~~a~~~~~~m~~~~~~p-------------~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~-------~~~~--~~~~~~ 372 (624)
.++++..|-+- -|-+| +......++..+... ++.....+.+..-. -.|. ..+...
T Consensus 324 ~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 324 SEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 66655444221 12122 111112222222221 11111111111100 0010 000000
Q ss_pred h----HHHHHHhHhhCCHHHHHHHhccCCCC-----Cc---hhHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCC-Ch
Q 006955 373 S----NAMITMYARCGNIQSALLEFSSVPIH-----DI---ISWNSIICGLAYHGYAE---KALELFERMRLTDFKP-DD 436 (624)
Q Consensus 373 ~----~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p-~~ 436 (624)
. ..++..|.+. ..+=..+.+. +. .+-+.|+..+.+.++.. +|+-+++.-... .| |.
T Consensus 402 i~a~~~kl~~~ye~g------ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf 473 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKG------LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNF 473 (932)
T ss_pred HHHHHHHHHHHHhcc------ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccH
Confidence 0 0111111110 0000000000 01 24566777788877765 344444444432 33 33
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+-..++..|+-.|-+..|.+.++.+.-+ .+..|...|. +...+...|++..+...+++...- +.-+..--.-+|..
T Consensus 474 ~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~ 550 (932)
T KOG2053|consen 474 QTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIAL 550 (932)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHH
Confidence 45556777888888888888888877654 2544433332 334556677888888888775531 01111111122333
Q ss_pred HHhcCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEE--cCeEEEE
Q 006955 517 CRIHNNIKVGEIAGERVMELEPN----NSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQI--NDGGHVF 590 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~--~~~~~~~ 590 (624)
..+.|.+.+..++..--.++.-. -..+=..........++.++-...+..|+-.-.+.+. .|..+ +.+..+|
T Consensus 551 AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~~e~~I--~w~~L~DNRDl~~~ 628 (932)
T KOG2053|consen 551 AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPPSEDRI--QWVSLSDNRDLNAI 628 (932)
T ss_pred HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCcchhhc--cccccccccccccc
Confidence 34677777666554433333221 1122334455566677888777777766522111222 34433 3557777
Q ss_pred eeCCCCC
Q 006955 591 LSGDSSH 597 (624)
Q Consensus 591 ~~~~~~~ 597 (624)
..=++.|
T Consensus 629 ~~w~p~~ 635 (932)
T KOG2053|consen 629 PYWDPED 635 (932)
T ss_pred ccCCCcc
Confidence 6555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-05 Score=65.10 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 423 LFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 423 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
++++... ..|+. .....+...+...|+.++|.+.++.+... .| +...+..+...+...|++++|..++++..+
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455554 45544 44556667788889999999999988773 35 778888899999999999999999998876
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 501 DGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 501 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
.+ +.++..+..+...+...|+++.|...++++++..|.++.
T Consensus 80 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LD-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 43 446778888888889999999999999999999996654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00025 Score=68.11 Aligned_cols=145 Identities=19% Similarity=0.134 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV-GVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 481 (624)
+.-....+...|.+++|+..++.+... .|+...|. .....+...++..+|.+.++++.. ..|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHH
Confidence 333344566788999999999999884 66666555 445678999999999999999987 4575 5566688999
Q ss_pred hhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAK 561 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 561 (624)
|.+.|++.+|+.++++.... .+-|+..|..|.++|...|+..++... .++.|...|++++|.
T Consensus 384 ll~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 99999999999999998765 366899999999999999997776654 455678889999999
Q ss_pred HHHHHHHHCC
Q 006955 562 RIFAQMKENG 571 (624)
Q Consensus 562 ~~~~~m~~~~ 571 (624)
..+.+.++..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999888775
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00022 Score=62.79 Aligned_cols=151 Identities=12% Similarity=0.064 Sum_probs=118.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh----
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG---- 483 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 483 (624)
...|...+++++|++...... ..+ ....=...+.+..+++-|.+.+++|.+ + .+..+.+.|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence 345788999999999987722 222 222223345677889999999999986 2 35666776666664
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH-
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR- 562 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~- 562 (624)
-.+...+|.-+|++|.+. .+|++.+.+....++...|++++|+.+++.++..++++|.++..++-+-...|...++.+
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 345799999999999865 589999999999999999999999999999999999999999999999999998877665
Q ss_pred HHHHHHH
Q 006955 563 IFAQMKE 569 (624)
Q Consensus 563 ~~~~m~~ 569 (624)
.+.+++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.6e-05 Score=79.31 Aligned_cols=162 Identities=9% Similarity=-0.002 Sum_probs=123.6
Q ss_pred CCCCcHHHHHHHHHHHH--hCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHH
Q 006955 347 DLPTLDLGRQIHAQAIK--IARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
..+.+..+...+-++.. ...+.+...+-.|.....+.|..++|+.+++... +.+...+..++..+.+.+++++|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~ 140 (694)
T PRK15179 61 RHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGR 140 (694)
T ss_pred HhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHH
Confidence 44444444444443332 3456667788888999999999999999999877 345567777888999999999999
Q ss_pred HHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 422 ELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
..+++... ..|+.. ....+..++.+.|+.++|..+|+++... .| +...+..+...+...|+.++|...|++..
T Consensus 141 ~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 141 AEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988 467664 5556667888999999999999999873 25 57888899999999999999999999987
Q ss_pred cCCCCcCHHHHHHHH
Q 006955 500 ADGIEVSPTVWGALL 514 (624)
Q Consensus 500 ~~g~~p~~~~~~~l~ 514 (624)
+.. .|....|+.++
T Consensus 216 ~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 216 DAI-GDGARKLTRRL 229 (694)
T ss_pred Hhh-CcchHHHHHHH
Confidence 652 45555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.01 Score=57.99 Aligned_cols=433 Identities=13% Similarity=0.135 Sum_probs=238.3
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHhcccC---ChhHHHHHHHHHHhCCChHHHHHHhccCCCC--ChhHHHHHHHHHH
Q 006955 113 DVVSWNLVIGALVNCQRMDLAESYFKEMGAR---DVASWTIMVNGLVREGRIVEARKLFDKMPAK--DVQAWNLMIAGYL 187 (624)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~ 187 (624)
|+.+|+.|++-+... -.+++.+.++++..+ .+..|..-+..-.+.++++..+++|.+.+.. +...|...++.--
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVR 97 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 677899999877666 899999999999863 6678888889999999999999999888743 7777877776433
Q ss_pred H-cCChhH----HHHHHHHcccC---Ccc---cHHHHHHHH---------HcCCCHHHHHHHhhhCCC-C---------C
Q 006955 188 D-NGCVGV----AEDLFQKMHDR---DLT---SWKQLINGL---------VNSRRIDAAISYFKQMPE-T---------C 237 (624)
Q Consensus 188 ~-~g~~~~----A~~~~~~~~~~---~~~---~~~~l~~~~---------~~~~~~~~A~~~~~~~~~-~---------~ 237 (624)
+ +|+... ..+.|+-...+ |+. .|+..+..+ ..+.+++...+++.++.. | |
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~D 177 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKD 177 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 3 233332 33334333332 222 244444332 223345566666666654 2 1
Q ss_pred cchHHHHHHHHH-------hcCChHHHHHHHhhcCCCCcchhhHHHHHHHhc-------CChHHHHHHHhhcCCCCceeh
Q 006955 238 EKTWNSIISVLI-------RNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEM-------GEVGSAIKVFELMTTRDVTVW 303 (624)
Q Consensus 238 ~~~~~~ll~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~~~~~~~~~~ 303 (624)
-.+|..-++... +...+..|.++++++. .+..++.+. |-.++..+ +..|
T Consensus 178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~--------~lt~GL~r~~~~vp~~~T~~e~~q---------v~~W 240 (656)
T KOG1914|consen 178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQ--------NLTRGLNRNAPAVPPKGTKDEIQQ---------VELW 240 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH--------HHHhhhcccCCCCCCCCChHHHHH---------HHHH
Confidence 111211111110 1112223333333222 000000000 00001000 0011
Q ss_pred hhhhhHhhcCC------C--chHHHHHHHH-hHHcCCCCCHHHH-HHHHH----HHcCCCC-------cHHHHHHHHHHH
Q 006955 304 NVMIFGLGEND------L--GEEGLKFFVQ-MKESGPSPDNATF-TSVLT----ICSDLPT-------LDLGRQIHAQAI 362 (624)
Q Consensus 304 ~~l~~~~~~~~------~--~~~a~~~~~~-m~~~~~~p~~~~~-~~ll~----~~~~~~~-------~~~a~~~~~~~~ 362 (624)
-.+|.-=..++ . .....-.+++ |.--+..|+..-. ...+. .+...|+ -+++..+++..+
T Consensus 241 ~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I 320 (656)
T KOG1914|consen 241 KNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAI 320 (656)
T ss_pred HHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 11111100000 0 0011112222 1222333333211 11111 1222233 234444554444
Q ss_pred HhCCCCCcchhHHHHHHhHhhC---CHHHHHHHhccCC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-
Q 006955 363 KIARNQFTTVSNAMITMYARCG---NIQSALLEFSSVP----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP- 434 (624)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p- 434 (624)
..-...+..+|..+.+.--..- ..+.....++++. ..-..+|..+++.-.+..-...|..+|.+.++.+..+
T Consensus 321 ~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h 400 (656)
T KOG1914|consen 321 EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH 400 (656)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence 3322223333333222111111 1333344444443 2233468888888888888999999999999988888
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGA 512 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~ 512 (624)
.....++++..++ .++.+.|.++|+--.+.+| -++......++.+...|+-..|..+|++....+++|+ ..+|..
T Consensus 401 hVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 401 HVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred hhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 4556666766554 5788999999998887642 2344445778888899999999999999998877776 459999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCC----CchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNN----SGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
++.--..-||...+.++-++.....|.+ ...-..+..-|.-.+.+.--..-++.
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 9999899999999999999888766632 12345555666666665544444333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.7e-05 Score=63.22 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=68.5
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKV 525 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~ 525 (624)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+...+..-.|+ +.....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666666431111 122233455666677777777777777766431121 1233445566667777777
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
|...++.. ...+..+..+..++.+|...|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777553 22333555677777777777777777777764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0059 Score=58.28 Aligned_cols=425 Identities=9% Similarity=0.046 Sum_probs=209.3
Q ss_pred cCCChHHHHHHHHhcccC---Ch------hHHHHHHHHHHhCCChHHHHHHhccCCCC-ChhHHHHHH--HHHHHcCChh
Q 006955 126 NCQRMDLAESYFKEMGAR---DV------ASWTIMVNGLVREGRIVEARKLFDKMPAK-DVQAWNLMI--AGYLDNGCVG 193 (624)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~--~~~~~~g~~~ 193 (624)
+.+++.+|..+|.++.+. ++ ..-+.++++|... +++.....+.+..+. ....|-.+. -.+.+.+++.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 568888888888877642 21 2234455665543 344444444433321 122333333 3445677888
Q ss_pred HHHHHHHHcccC------------------CcccHHHHHHHHHcCCCHHHHHHHhhhCCC--------CCcchHHHHHHH
Q 006955 194 VAEDLFQKMHDR------------------DLTSWKQLINGLVNSRRIDAAISYFKQMPE--------TCEKTWNSIISV 247 (624)
Q Consensus 194 ~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~ll~~ 247 (624)
+|.+.+...... |...-+..+.++...|++.++..+++++.. =+..+|+.++-.
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 888877665432 111123455666677777777777766653 144455554433
Q ss_pred HHhcCChHHHHHHHhhcCCCC-cchhhHHHHHHHhcC-ChHHHHHHHhhcCCCCceehhhhhhHhhc--CCCchHHHHHH
Q 006955 248 LIRNGLVKEAHSYLEKYPYSN-IASWTNVIVGYFEMG-EVGSAIKVFELMTTRDVTVWNVMIFGLGE--NDLGEEGLKFF 323 (624)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~ 323 (624)
+.+.=-++--.. + ..+ ..-|..++..|.+.= ..+. . -+++.. |.......++....- ..+..--+.++
T Consensus 177 lsrSYfLEl~e~----~-s~dl~pdyYemilfY~kki~~~d~-~-~Y~k~~-peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 177 LSRSYFLELKES----M-SSDLYPDYYEMILFYLKKIHAFDQ-R-PYEKFI-PEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HhHHHHHHHHHh----c-ccccChHHHHHHHHHHHHHHHHhh-c-hHHhhC-cHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 332211111000 0 011 111333333333211 1110 0 000000 000011111111111 11122223333
Q ss_pred HHhHHcCCCCCHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC----CcchhHHHHHHhHhhCCHHHHHHHhccCC-
Q 006955 324 VQMKESGPSPDNAT-FTSVLTICSDLPTLDLGRQIHAQAIKIARNQ----FTTVSNAMITMYARCGNIQSALLEFSSVP- 397 (624)
Q Consensus 324 ~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 397 (624)
+.-...-+.|+... ...+...+.. +.+.+..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+.
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333334555332 2233333333 4444444443333321111 12344556666667777777766665443
Q ss_pred -CCCchhH-------HHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChh-hHHHHHH---HhcccCh-HHHHHHHHH
Q 006955 398 -IHDIISW-------NSIICGLA----YHGYAEKALELFERMRLTDFKPDDI-TFVGVLS---ACSYAGL-VDQGRYYFD 460 (624)
Q Consensus 398 -~~~~~~~-------~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~---~~~~~g~-~~~a~~~~~ 460 (624)
+|+...- ..+-+..+ ..-+..+-+.+|+..... ..|.. ....++. -+-+.|. -+.|..+++
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3322211 11111111 112334445566666553 33332 1122222 2344454 788899988
Q ss_pred HhhhhcCCCC-CcchHHHHHH----Hhhc---cCChHHHHHHHHHcccCCCCcC----HHHHHHHHHH--HHhcCChHHH
Q 006955 461 CMKNKYFLQP-RSAHYTCVVD----LLGR---FGLIDEAMNLLNEIRADGIEVS----PTVWGALLGA--CRIHNNIKVG 526 (624)
Q Consensus 461 ~~~~~~~~~p-~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~--~~~~g~~~~a 526 (624)
.+.+ +.| |..+-|.+.. .|.. ...+.+-.++-+-+.+.|++|- ...-+.|..| ...+|++.++
T Consensus 405 ~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 405 LILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 8886 445 4444333222 2322 2344555555555667788773 3455667666 4789999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.-...-+.++.| .+.+|..++-++....++++|..++..+
T Consensus 482 ~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 482 YLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999 9999999999999999999999999754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.3e-06 Score=62.35 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=58.4
Q ss_pred cCChHHHHHHHHHcccCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGI-EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
.|+++.|+.+++++.+..- .|+...+..+..++...|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4677888888888776321 11445566677888888888888888888 667776767777778888888888888888
Q ss_pred HHH
Q 006955 564 FAQ 566 (624)
Q Consensus 564 ~~~ 566 (624)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-05 Score=59.06 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=76.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
+..++..+...|++++|.+.++++.+.. +.++..+..+...+...|+++.|...++++....|.++..+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4556777788889999999998877642 334467777778888889999999999999998888888888999999999
Q ss_pred CChHHHHHHHHHHHHC
Q 006955 555 GRREDAKRIFAQMKEN 570 (624)
Q Consensus 555 g~~~~A~~~~~~m~~~ 570 (624)
|++++|...+.+..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999988877554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0027 Score=67.83 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=131.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCc
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLG 316 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (624)
.+..|+..+...+++++|.++.+... +..+..|..+...+.+.++...+..+ .++.......++
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~ 99 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW 99 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch
Confidence 44445555555555555555544333 22233333333344444443333222 233334444455
Q ss_pred hHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccC
Q 006955 317 EEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (624)
.-+..++..|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.++.+.|.+...|... ++++|++++.+
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K- 174 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK- 174 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH-
Confidence 4444444444442 2233456666777777777777777777777766 55677777777778777 88888776544
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHH
Q 006955 397 PIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYT 476 (624)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 476 (624)
.+..+...+++.++.++|.++... .|+...+ -.++.+.+....+..--..++-
T Consensus 175 ----------AV~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 175 ----------AIYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred ----------HHHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHH
Confidence 334466667888888888888773 4443222 1222333333222222344455
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACR 518 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 518 (624)
.+-..|-..++|+++..+++.+.+ ..| |.....-++.+|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 566667777888888888888887 344 4556666776664
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.5e-05 Score=60.59 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=62.3
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHH
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLI 546 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 546 (624)
++..++..+.+.|++++|.+.++++... .|+ +..+..+..++...|+++.|...++.+....|.+ +..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4445566666677777777777776542 222 2345556666777777777777777777766653 345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.++.+.|++++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 7777777777777777777776654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=48.37 Aligned_cols=35 Identities=40% Similarity=0.656 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD 436 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 436 (624)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.8e-05 Score=68.84 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=82.8
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 523 (624)
+.+.+++++|+..|.++++ +.| |...|..-..+|.+.|.++.|++-.+..+. +.|. ...|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 4567788888888888887 566 777777888888888888888888888776 5664 55888888888888888
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 558 (624)
++|++.|+++++++|.+......|-.+--..+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888887766666655544444333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.029 Score=58.44 Aligned_cols=407 Identities=14% Similarity=0.085 Sum_probs=199.9
Q ss_pred HhCCChHHHHHHhccCCCCChh-HHHHHH--HHHHHcCChhHHHHHHHHccc---CCcccHHHHHHHHHcCCCHHHHHHH
Q 006955 156 VREGRIVEARKLFDKMPAKDVQ-AWNLMI--AGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVNSRRIDAAISY 229 (624)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (624)
...+++..|.+....+.++.+. .|...+ -.+.+.|+.++|..+++.... .|..+...+-.+|...++.++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4566777777777776643222 122222 234677888888877776653 3555777777788888888888888
Q ss_pred hhhCCC--CCcchHHHHHHHHHhcCChHH----HHHHHhhcCCCCcchhhHHHHHHHhcCC----------hHHHHHHHh
Q 006955 230 FKQMPE--TCEKTWNSIISVLIRNGLVKE----AHSYLEKYPYSNIASWTNVIVGYFEMGE----------VGSAIKVFE 293 (624)
Q Consensus 230 ~~~~~~--~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~ 293 (624)
++...+ |+......+..++.+.+++.+ |.++++ ..+.++..+=++++.+...-. ..-|.+.++
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 888776 555555566667777766644 333333 224555555455554443211 223444444
Q ss_pred hcCCCCc--ee---hhhhhhHhhcCCCchHHHHHHH-HhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 006955 294 LMTTRDV--TV---WNVMIFGLGENDLGEEGLKFFV-QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN 367 (624)
Q Consensus 294 ~~~~~~~--~~---~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (624)
.+.+.+. .+ ...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...|..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 4443331 00 0111122344566777777773 3333222333333344555566667777777777666666533
Q ss_pred CCcchhHHHHHHhH----------------hhCCHHHHHHHhccCCCC-CchhHHHHHHHHH---HcCChHHHHHHHHHH
Q 006955 368 QFTTVSNAMITMYA----------------RCGNIQSALLEFSSVPIH-DIISWNSIICGLA---YHGYAEKALELFERM 427 (624)
Q Consensus 368 ~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~~~m 427 (624)
. |...++.+. ..+..+...+..++.... ....|-+-+.++. .-|+.+++.-.|-+
T Consensus 259 d----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~- 333 (932)
T KOG2053|consen 259 D----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK- 333 (932)
T ss_pred c----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH-
Confidence 2 222222111 111222222222222211 1112322233322 23555554433322
Q ss_pred HHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcc----h---HHHHHHHhhccCC-----hHHHHHHH
Q 006955 428 RLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA----H---YTCVVDLLGRFGL-----IDEAMNLL 495 (624)
Q Consensus 428 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~g~-----~~~A~~~~ 495 (624)
+-|-.|- +..=+..|...=..+....++...... .++.. . +...+..-...|. .+.-..++
T Consensus 334 -kfg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 334 -KFGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred -HhCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 1111211 111111111111222223333322211 11111 0 1111111111121 11111222
Q ss_pred -------HHcccC--CCCcCH---------HHHHHHHHHHHhcCChH---HHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 496 -------NEIRAD--GIEVSP---------TVWGALLGACRIHNNIK---VGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 496 -------~~~~~~--g~~p~~---------~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
+.-.+. ++-|+. -+.+.|+..|.+.+|.. +|+-+++.....+|.|+.+-..|+.+|.-.
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHh
Confidence 111111 122221 13456777888777654 677788888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCccC
Q 006955 555 GRREDAKRIFAQMKENGVKKE 575 (624)
Q Consensus 555 g~~~~A~~~~~~m~~~~~~~~ 575 (624)
|-+..|.+.++.+.-+.+..+
T Consensus 487 Ga~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 487 GAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred cCChhHHHHHHhcchHHhhhc
Confidence 999999999998876665443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=71.05 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=63.4
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQ 454 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 454 (624)
|+..+...++++.|+++|+++...++.....++..+...++-.+|.+++++..+. .| +...+..-...|.+.++.+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHH
Confidence 3444444555666666666655444444555555555555555666666555542 22 22333333344555555666
Q ss_pred HHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 455 GRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 455 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
|..+.+++.+ ..| +..+|..|+.+|...|+++.|+-.++.+.
T Consensus 253 AL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666655554 334 34455566666666666666665555554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=66.58 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=92.8
Q ss_pred CC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCCchH
Q 006955 469 QP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI---HNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 469 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
.| |...|..|...|...|+...|..-|.+..+.. .+++..+..+..++.. ..+..++..++++++..+|.|....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 46 89999999999999999999999999988742 4567788888877533 3466789999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCccCC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKENGVKKEP 576 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 576 (624)
..|+..+...|++.+|...|+.|.+...+.+|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999998754444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.5e-05 Score=55.65 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC-ChHHHHHHHHHHHHC
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG-RREDAKRIFAQMKEN 570 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 570 (624)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46678888889999999999999999999999999999999999999999 799999999887653
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=2e-05 Score=46.76 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKP 434 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 434 (624)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888887
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=58.65 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=66.1
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGAL 513 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 513 (624)
+..+...+...|++++|...++.+.....-.| ....+..+..++.+.|+++.|.+.++++... .|+ +..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHHH
Confidence 34445555666777777777766665321111 1234555777777777777777777776652 232 4456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
..++...|+.+.|...++++++..|+++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 67777778888888888888887776654443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.025 Score=57.00 Aligned_cols=210 Identities=14% Similarity=0.113 Sum_probs=121.1
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc-CChhHHHH----------HHHHHHhCCChHHHHHH
Q 006955 99 IDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA-RDVASWTI----------MVNGLVREGRIVEARKL 167 (624)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~----------l~~~~~~~g~~~~a~~~ 167 (624)
+++|.+..+.- |.+..|..+.......-+++.|+..|-+... +.+...-. -...-+--|.+++|+++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 44454444432 7777788777777766677777766655542 11110000 01112234667777777
Q ss_pred hccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCC-----cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHH
Q 006955 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRD-----LTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN 242 (624)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 242 (624)
+-.+..+|. .|..+.+.|++-...++++.--..+ ..+++.+...+.....|++|.+.+..-.. -.
T Consensus 757 yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e 826 (1189)
T KOG2041|consen 757 YLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TE 826 (1189)
T ss_pred hhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hH
Confidence 766666554 3455666677777777766543211 12566666677777777777776665432 12
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHH
Q 006955 243 SIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
..+.++.+..++++-+.+-..+ +.+....-.+..++.+.|.-++|.+.|-+...|. +.+..|...++|.+|.++
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 2344555555554444333322 5566666777788888888888887776655442 334556667777777776
Q ss_pred HHHh
Q 006955 323 FVQM 326 (624)
Q Consensus 323 ~~~m 326 (624)
-+..
T Consensus 901 aq~~ 904 (1189)
T KOG2041|consen 901 AQRF 904 (1189)
T ss_pred HHhc
Confidence 6554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.4e-05 Score=47.81 Aligned_cols=34 Identities=38% Similarity=0.572 Sum_probs=29.7
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD 334 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 334 (624)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999998888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00018 Score=70.06 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=74.3
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH 520 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 520 (624)
...+...|+++.|++.++++.+. .| +...|..+..+|.+.|++++|+..++++++ +.| ++..|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 34456667888888888887763 45 566777777778888888888888888776 344 466777777777788
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
|++++|+..+++++++.|.++.....+..+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888888777665555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.027 Score=53.88 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=98.7
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-HHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTD-FKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-TCV 478 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 478 (624)
..+|...+..-.+..-.+.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+--...+ ||...| +..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 4567777887778888888899999988888 5677778888777554 467788888888766643 555444 356
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+..+.+.++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+-+++.+..|.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 66677888888888888865532 2233 457888887778888888888888888888774
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00048 Score=57.63 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYT 476 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 476 (624)
.|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.... ..|+ .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 355555555 478888888888888875 3333 233345567888899999999999988752 1222 23444
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
.|..++...|++++|+..++..... ...+..+.....++...|++++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5788888999999999999775542 3345577778888999999999999998763
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.1e-05 Score=53.28 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=43.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+...+...|++++|...++++++..|.++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888877888888888888888888888888777654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.9e-05 Score=46.87 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=25.1
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCC
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 333 (624)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0002 Score=69.87 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=84.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
-...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|+..++++.+ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 345677889999999999999984 554 45777788899999999999999999987 456 67788899999999
Q ss_pred cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
.|++++|+..|++.++ +.|+.......+..|
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999987 567655544444333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.6e-05 Score=67.84 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=79.1
Q ss_pred HhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
-..+.+++++|+..|.++++ +.| |++.|..=..+|.+.|.++.|++-.+.++.++|.-..+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 35678999999999999998 566 677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006955 560 AKRIFAQMKE 569 (624)
Q Consensus 560 A~~~~~~m~~ 569 (624)
|.+.|++.++
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999887664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.004 Score=51.81 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=106.2
Q ss_pred CCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc---CHH
Q 006955 432 FKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV---SPT 508 (624)
Q Consensus 432 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~ 508 (624)
..|+...-..+..+....|+..+|...|++...- -+.-|....-.+.++....+++..|...++++-+. .| ++.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCC
Confidence 5677777777888899999999999999988762 23337778888888888999999999999887653 23 233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
....+.+++...|....|+..|+.+....| ++.........+.++|+.+++..-+....+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455677888999999999999999999998 788888888889999998888776655543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0014 Score=61.55 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=113.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHH-----------
Q 006955 409 CGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYT----------- 476 (624)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 476 (624)
.++...|++++|...--...+. .++. .....-..++...++.+.+...|++..+ +.|+...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 3466788888888887776653 2222 2222222355667889999999988775 446432211
Q ss_pred --HHHHHhhccCChHHHHHHHHHcccC---CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 477 --CVVDLLGRFGLIDEAMNLLNEIRAD---GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 477 --~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
.=.+-..+.|.+..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.-.+++.+++|.-...|..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 1123345789999999999998762 22334445655666677899999999999999999998888899999999
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 006955 552 LSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~ 570 (624)
...++|++|.+-+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=61.00 Aligned_cols=99 Identities=12% Similarity=-0.011 Sum_probs=75.8
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
...+..+...+...|++++|...+++..+.+..+. ...+..+..++...|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44567777888888999999999988876432221 3577788888889999999999999999999988888888888
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHHC
Q 006955 550 MYLSCGR--------------REDAKRIFAQMKEN 570 (624)
Q Consensus 550 ~~~~~g~--------------~~~A~~~~~~m~~~ 570 (624)
+|...|+ +++|.+++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 8888776 45566666555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.001 Score=67.79 Aligned_cols=140 Identities=17% Similarity=0.069 Sum_probs=75.6
Q ss_pred CCCchhHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhccc--------ChHHHHHHHHHHhh
Q 006955 398 IHDIISWNSIICGLAY--HG---YAEKALELFERMRLTDFKPDDI-TFVGVLSACSYA--------GLVDQGRYYFDCMK 463 (624)
Q Consensus 398 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 463 (624)
+.+...|...+.+... .+ +...|..+|++..+ ..|+.. .+..+..++... +++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4466667776666432 22 25677778888777 466652 333322222111 12233333333322
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
.......++..|..+.-.+...|++++|...++++.+ +.|+...|..+...+...|+.++|...++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 2111112345555555555556667777777766666 345666666666666666777777777777766666555
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.019 Score=54.53 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=85.5
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+.+..+.-|...|+...|.++.++ +.+ |+...|...+.+|+..++|++-.++... +-+|.-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 4566667777788888877776554 434 8899999999999999999988876543 2345889999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
|...|+..+|..+..++ .+..-+..|.+.|++.+|.+.--
T Consensus 247 ~~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998882 22567788999999999987643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0003 Score=60.72 Aligned_cols=96 Identities=14% Similarity=-0.066 Sum_probs=78.0
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
...|..++..+...|++++|+..+++.....-.| .+.++..+..++...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777888888999999999999987642222 23578888889999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 006955 550 MYL-------SCGRREDAKRIFAQM 567 (624)
Q Consensus 550 ~~~-------~~g~~~~A~~~~~~m 567 (624)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.05 Score=52.22 Aligned_cols=59 Identities=12% Similarity=0.038 Sum_probs=35.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTC 477 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 477 (624)
+..+|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHH
Confidence 4456666666544444444 666666776666666666667777666653 4455555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=51.57 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=51.1
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+...+...|++++|.+.|+++++.. +-++..+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788999999999999988853 23577888888899999999999999999999999764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00083 Score=53.13 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=74.5
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---CCchHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPN---NSGVYLILTEMY 551 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 551 (624)
.+..++-..|+.++|+.+|++..+.|+... ...+-.+..++...|++++|..++++.....|. +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 356677788999999999999988876654 346666778888999999999999999988786 556666777788
Q ss_pred HhcCChHHHHHHHHHHHH
Q 006955 552 LSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~ 569 (624)
...|+.++|.+.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999998766544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.082 Score=54.09 Aligned_cols=319 Identities=15% Similarity=0.112 Sum_probs=186.2
Q ss_pred HHHHHHHHcCCCHHHHHHHhhhCCCCC---cchHHHHHHHHHhcC---ChHHHHHHHhhcCC--CCcchhhHHHHHHHhc
Q 006955 211 KQLINGLVNSRRIDAAISYFKQMPETC---EKTWNSIISVLIRNG---LVKEAHSYLEKYPY--SNIASWTNVIVGYFEM 282 (624)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 282 (624)
..+++-+...+.+..|+++-..+..|. ...|.....-+.+.. +-+.+..+-+++.. ..-.+|..+..-...+
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 445666777788888888888777665 345555555555542 23344444444443 3344577777777788
Q ss_pred CChHHHHHHHhhcCCC--------CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHH
Q 006955 283 GEVGSAIKVFELMTTR--------DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 283 g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 354 (624)
|+.+.|..+++.=+.. +..-+...+.-+...|+.+-...++-.|... .+...|...++ +...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l~------~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTLR------NQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHH------hchhh
Confidence 8888888887643321 2233455566667777777777777666542 22222222221 23334
Q ss_pred HHHHHHHHH-hCCCCCcchhHHHHHHhHhhCCHHHHHHH-hccC-----CCCCchhHHHHHHHHHHcCC----------h
Q 006955 355 RQIHAQAIK-IARNQFTTVSNAMITMYARCGNIQSALLE-FSSV-----PIHDIISWNSIICGLAYHGY----------A 417 (624)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~-----~~~~~~~~~~l~~~~~~~~~----------~ 417 (624)
..++.+..+ .+. ..+-+.|-...+...+-.+ ++.. ..+-..........+++... .
T Consensus 592 ~~lY~~~~r~~~~-------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQDR-------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhhch-------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 444443332 111 1122222222222221111 1110 01111122233334443332 1
Q ss_pred HHHHHHHHHHHH-CCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHH
Q 006955 418 EKALELFERMRL-TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 418 ~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
.+-+.+.+.+.. .|..-...+.+-.+.-+...|+..+|.++-.+.+ + ||-..|..-+.+++..++|++-.++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i-pdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----I-PDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----C-cchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222333332 2334455566666777788899999988876544 3 899999999999999999999888877
Q ss_pred HcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 497 EIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
... +|.-|.-++.+|.+.|+.++|.+++-+...+. ....+|.+.|++.+|.+.-
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 665 25667888999999999999999987653322 6788899999999998754
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00039 Score=53.15 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=52.3
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (624)
+...+...|++++|...++.+.+. .| +...+..+...+...|++++|.+.+++..... +.+..++..+...+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 333444455555555555555442 22 23445555556666666666666666655432 22334556666666666
Q ss_pred CChHHHHHHHHHHHccCC
Q 006955 521 NNIKVGEIAGERVMELEP 538 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p 538 (624)
|+++.|...+.++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777666666555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0014 Score=61.50 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-hcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA-CSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 480 (624)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 368888888888889999999999998542 2234445444443 34457788899999999986 4457888999999
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCH---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSP---TVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.+...|+.+.|..+|++.... +.++. ..|...+.--...|+.+....+.+++.+..|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998875 34433 588999988889999999999999999988853
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=51.20 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..|...++++.|...++++++.+|.++..+...+.++...|++++|.+.+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788889999999999999999888889999999999999999999988887664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.3e-05 Score=52.79 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=39.5
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 518 RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...|++++|...++++.+..|.++.+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788888888888888877777778888888888888888877766554
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0001 Score=42.53 Aligned_cols=31 Identities=39% Similarity=0.664 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDF 432 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 432 (624)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.071 Score=50.16 Aligned_cols=247 Identities=15% Similarity=0.121 Sum_probs=163.3
Q ss_pred hhcCCCchHHHHHHHHhHHcCCCCCHH--HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 310 LGENDLGEEGLKFFVQMKESGPSPDNA--TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
-.-.|+++.|.+-|+.|... |... .+..|.-...+.|+.+.|.++-...-..- +.-.....+.+...+..|+|+
T Consensus 130 al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 34467888888888887652 3222 23344444556777777777776655432 223445567788888888888
Q ss_pred HHHHHhccCC-----CCCch--hHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHH
Q 006955 388 SALLEFSSVP-----IHDII--SWNSIICGL---AYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGR 456 (624)
Q Consensus 388 ~A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~ 456 (624)
.|+++.+.-. .++.. .-..|+.+- .-..+...|...-.+..+ +.|+.. .-.....++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 8888887543 33332 111222221 123356667766666655 677764 3334456889999999999
Q ss_pred HHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHH-HHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 457 YYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM-NLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 457 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
.+++.+-+ ..|.+.++... .+.+.|+..... +-.+.+.+ ++|+ ......+..+....|++..|..-.+.+.
T Consensus 284 ~ilE~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hHHHHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999887 35777765433 345666543321 11222222 4454 5566677788889999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHHC
Q 006955 535 ELEPNNSGVYLILTEMYLSC-GRREDAKRIFAQMKEN 570 (624)
Q Consensus 535 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 570 (624)
...| ....|..|+++-... |+-.++...+.+..+.
T Consensus 357 r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999 778899999987765 9999999999887765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0019 Score=65.85 Aligned_cols=137 Identities=13% Similarity=0.083 Sum_probs=101.3
Q ss_pred CCCCChhhHHHHHHHhcc-----cChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhcc--------CChHHHHHHHH
Q 006955 431 DFKPDDITFVGVLSACSY-----AGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRF--------GLIDEAMNLLN 496 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 496 (624)
+.+.|...|..++.+... .++.+.|..+|+++.+ ..|+ ...|..+..+|... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345666788888876432 2447799999999998 5684 55555555444322 22345555555
Q ss_pred HcccCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 497 EIRADG-IEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 497 ~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+..... ...++..+..+.-.....|++++|...++++++++| +...|..+++++...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 544421 344567788787777788999999999999999999 68899999999999999999999999887665
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00088 Score=55.20 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=78.1
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
...-+...|++++|..+|+-+.-.+ .-++..|..|..+|...+++++|...|..+..+.++||..+...+.+|...|+.
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3344457899999999999876532 336677888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006955 558 EDAKRIFAQMKE 569 (624)
Q Consensus 558 ~~A~~~~~~m~~ 569 (624)
+.|...|.....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987766
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.045 Score=52.08 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=48.0
Q ss_pred HHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHh
Q 006955 183 IAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLE 262 (624)
Q Consensus 183 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 262 (624)
+.-+...|+...|.++-.++.=++..-|..-+.+++..++|++-.++... +..+..|..++.+|.+.|+..+|..+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 34444455555555555555444444555555555555555554444332 2334455555555555555555555444
Q ss_pred hcCCCCcchhhHHHHHHHhcCChHHHHH
Q 006955 263 KYPYSNIASWTNVIVGYFEMGEVGSAIK 290 (624)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (624)
.+ .+..-+..|.++|++.+|.+
T Consensus 262 k~------~~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 262 KI------PDEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred hC------ChHHHHHHHHHCCCHHHHHH
Confidence 31 11333444455555444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0018 Score=56.09 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPD--DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVV 479 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 479 (624)
.+..+...+...|++++|...+++..+.+..++ ...+..+...+...|++++|...+++..+. .| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 344444455555555555555555544221111 123444444445555555555555554442 23 333344444
Q ss_pred HHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
.+|...|+...+..-++... ..+++|.+.++++.+.+|.+ |..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 44444444333332222211 12567788888888888854 444444444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.032 Score=51.07 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=94.7
Q ss_pred HHHhHhhCCHHHHHHHhccCC--CCC-chh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcc
Q 006955 377 ITMYARCGNIQSALLEFSSVP--IHD-IIS---WNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSY 448 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~--~~~-~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 448 (624)
...+...|++++|.+.|+++. .|+ ... .-.++.++.+.+++++|...+++..+. -|+. .-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 334455667777777776665 221 111 123455667777777777777777763 3332 222222222211
Q ss_pred --c---------------Ch---HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 449 --A---------------GL---VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 449 --~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
. .+ ...|...|+.+.+.+ |+. .-..+|.+.+..+.. ..-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~---~la~- 176 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKD---RLAK- 176 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHH---HHHH-
Confidence 0 01 223444444444432 332 223333333333221 0000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.--.+..-|.+.|.+..|..-++.+++..|.. +.....+..+|...|..++|.++...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01133445788999999999999999977754 4557788899999999999999876553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.11 Score=49.14 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----h-hHHHHHHHhcccChHHHHHHHHHHhhhhc-CCCCC--cc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----I-TFVGVLSACSYAGLVDQGRYYFDCMKNKY-FLQPR--SA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 473 (624)
++..+...+.+.|++++|.++|++....-...+. . .+...+-++...|+...|...+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3455667788888888888888887764322221 1 22233335556677888888777766431 12111 23
Q ss_pred hHHHHHHHhhc--cCChHHHHHHHHHcccCCCCcCHHHHHHHH
Q 006955 474 HYTCVVDLLGR--FGLIDEAMNLLNEIRADGIEVSPTVWGALL 514 (624)
Q Consensus 474 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (624)
....|+.++-. ...++.|+.-|+.+. +.|+..-..|+
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~ 275 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHH
Confidence 34455555543 235666666666665 44544434333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00014 Score=41.98 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=21.5
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCC
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGP 331 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 331 (624)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00028 Score=50.21 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=54.0
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHN-NIKVGEIAGERVMELEP 538 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 538 (624)
++..|..+...+...|++++|+..|++.++ +.| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677788888889999999999998887 445 4668888888888888 68999999999988887
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00032 Score=52.21 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCChHHHHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP-TVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 528 (624)
|+++.|+.+++++.+.....|+...+-.+..+|.+.|++++|..++++ .+ ..|+. .....+..++...|++++|+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455555555555554321111222333355555555555555555555 21 22322 233333445555566666555
Q ss_pred HHHH
Q 006955 529 AGER 532 (624)
Q Consensus 529 ~~~~ 532 (624)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00021 Score=50.67 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555554442 23 344444445555555555555555555444
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.11 Score=52.73 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=156.1
Q ss_pred hhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCC-CCcccHHH--------H--HHHHHcCCChHHHHHH
Q 006955 68 VQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL-KDVVSWNL--------V--IGALVNCQRMDLAESY 136 (624)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~--------l--~~~~~~~~~~~~a~~~ 136 (624)
+++|....+. .|.+..|..|.......-.++-|...|-+... +.+...-. + ...-+-.|.+++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4444444443 45666777777766666667777776665543 22211111 1 1112235899999999
Q ss_pred HHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHH
Q 006955 137 FKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAK-----DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWK 211 (624)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 211 (624)
|-.+..+|. .+..+.+.||+-...++++.=-.. -..+++.+...+.....|++|.+.|...... .
T Consensus 757 yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e 826 (1189)
T KOG2041|consen 757 YLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----E 826 (1189)
T ss_pred hhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----H
Confidence 988876653 356677888888888887653321 2468899999999999999999999876532 3
Q ss_pred HHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHH
Q 006955 212 QLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKV 291 (624)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (624)
..+.++.+..++++-..+...+.+ +......+.+.+.+.|.-++|.+.+-+...| .+.+..+...+++.+|.++
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHH
Confidence 467778887778777777666644 4556677788889999999988877654433 2345667777888888888
Q ss_pred HhhcCCCCceehhh--------------hhhHhhcCCCchHHHHHHHHhH
Q 006955 292 FELMTTRDVTVWNV--------------MIFGLGENDLGEEGLKFFVQMK 327 (624)
Q Consensus 292 ~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~m~ 327 (624)
-+...-|.+.+.-+ -|..+.+.|.+-.|-+++.+|.
T Consensus 901 aq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 901 AQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 77665554333211 1233445555555666665554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0019 Score=53.06 Aligned_cols=96 Identities=9% Similarity=-0.097 Sum_probs=73.2
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+-.+...+...|++++|.++|+-+.. +.| +...|-.|.-++-..|++++|+..|....... +-|+..+-.+..+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 444455566778888888888888776 556 56667778888888888888888888877743 3457777788888
Q ss_pred HHhcCChHHHHHHHHHHHccC
Q 006955 517 CRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+...|+.+.|++.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888888888755
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.065 Score=50.39 Aligned_cols=275 Identities=11% Similarity=0.040 Sum_probs=166.9
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHhhCC---CCCcchHHHHHHHHH--cCCChhhHHHHHhcCC-CCCchh--HHHHHHH
Q 006955 23 TWNVMIRGYF--KNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLM--QSDNVQGAKEVFDGME-VRDVVT--WNSMISG 92 (624)
Q Consensus 23 ~~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~-~~~~~~--~~~l~~~ 92 (624)
.|..|-.++. -.|+-..|.++-.+.. ..|....-.|+.+-. -.|++++|.+-|+.|. .|.... .-.|.-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 4666666654 3567777777665544 344444444544433 4688888888888887 222221 2223333
Q ss_pred HHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhccc-----CChh--HHHHHHHHH---HhCC
Q 006955 93 YVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGA-----RDVA--SWTIMVNGL---VREG 159 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~---~~~g 159 (624)
.-+.|..+.|...-+..-. | -+..+...+...+..||++.|+++++.-.. ++.. .-..|+.+- .-.-
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3466777777777766653 3 335677788888888888888888876553 2321 112222211 1123
Q ss_pred ChHHHHHHhccCC--CCChh-HHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHH----HHHhhh
Q 006955 160 RIVEARKLFDKMP--AKDVQ-AWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAA----ISYFKQ 232 (624)
Q Consensus 160 ~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----~~~~~~ 232 (624)
|...|...-.+.. .||.. .-..-...+.+.|++.++-.+++.+-+..++.--.++..+.+.|+.... .+-+..
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 3444444433333 34433 2333456778888888888888888877777666666667777764322 234556
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC--CCCcchhhHHHHHHHh-cCChHHHHHHHhhcCC
Q 006955 233 MPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP--YSNIASWTNVIVGYFE-MGEVGSAIKVFELMTT 297 (624)
Q Consensus 233 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 297 (624)
|+..+..+...+..+....|++..|..--+... .|....|-.|.+.-.. .|+-.++...+.+...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 666677777777788888888877766555554 5555666666666544 4888888888776653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.02 Score=54.08 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=84.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc-ChHHHHHHHHHHhhhhcCCC--C--CcchHHHHHH
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA-GLVDQGRYYFDCMKNKYFLQ--P--RSAHYTCVVD 480 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~--p--~~~~~~~l~~ 480 (624)
..+..|...|++..|-..+.+ +...|... |+++.|.+.+++...-+... + -..++..++.
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344455555555555444444 44556676 88888888888877642111 1 1345667788
Q ss_pred HhhccCChHHHHHHHHHcccCCCC-----cCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-----hHHHHHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIE-----VSPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSG-----VYLILTE 549 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~ 549 (624)
.+.+.|++++|.++|++....... .+.. .+-..+-++...||...|.+.+++.....|.-.. ....|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 889999999999999886543221 1221 2233334567789999999999999988874332 2445555
Q ss_pred HHHhc--CChHHHHHHHH
Q 006955 550 MYLSC--GRREDAKRIFA 565 (624)
Q Consensus 550 ~~~~~--g~~~~A~~~~~ 565 (624)
++-.. ..+++++.-|+
T Consensus 244 A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHTT-CCCHHHHCHHHT
T ss_pred HHHhCCHHHHHHHHHHHc
Confidence 55432 33444444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0061 Score=50.76 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=91.8
Q ss_pred CCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CCchH
Q 006955 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN--NSGVY 544 (624)
Q Consensus 467 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 544 (624)
...|++..--.|...+.+.|+..+|...|++...--+.-|+.....+.++....+++..|...++++.+.+|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3568777777899999999999999999999887656678999999999999999999999999999998875 57778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+++.|...|++.+|...|+...+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 89999999999999999988877654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=60.11 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=102.0
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc-cCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR-FGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
.+|..++...-+.+..+.|+.+|+++.+.. ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 467778888888889999999999998642 2245556655555444 56777799999998764 5667889999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNS---GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
-+...|+.+.|..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999776544 47888898889999999999999998764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0027 Score=58.51 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=65.2
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHH
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLI 546 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 546 (624)
.|...+..+.+.|++++|+..|+.+++ ..|+ +..+-.+..+|...|+++.|...|+++.+..|.+ +..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344444444556778888888877776 3343 2466667777778888888888888888766654 344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++.++...|++++|..++++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677777888888888888777654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00019 Score=42.17 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=30.8
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 530 GERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.071 Score=51.21 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=104.6
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCC-------CchhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIH-------DIISWNSIICGLAY---HGYAEKALELFERMRLTDFKPDDITFVGVL 443 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 443 (624)
..++-.|-...+++..+++.+.+... .+..-....-++-+ .|+.++|++++..+....-.+++.++..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34566788888899998888888732 12222234445556 789999999999966665677778887776
Q ss_pred HHhcc---------cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCC----hHHHHHHH----HHcccCC---C
Q 006955 444 SACSY---------AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGL----IDEAMNLL----NEIRADG---I 503 (624)
Q Consensus 444 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~----~~~~~~g---~ 503 (624)
..|-. ....+.|...+.+.-+ +.|+...--.++-.+...|. -.+..++- ....+.| -
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65422 2347788888877554 44544332223333333332 12222322 1111222 2
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..+-..+.+++.++.-.||.++|.+.++++....|+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 346667789999999999999999999999998874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0036 Score=53.99 Aligned_cols=115 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLG 515 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 515 (624)
.+..+...+...|++++|...+++......-.+ ...++..+..+|...|++++|++.+++.... .| ....+..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 344444555556666666666666654211001 1235666666777777777777777776652 33 2344455554
Q ss_pred HHH-------hcCChH-------HHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 516 ACR-------IHNNIK-------VGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 516 ~~~-------~~g~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
.+. ..|+++ +|...++++.+..|.+ +......+...|++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 544 666666 4445555555566632 33333334444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=59.66 Aligned_cols=133 Identities=10% Similarity=0.010 Sum_probs=92.1
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhh---hhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc----cCCC-CcCH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMK---NKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR----ADGI-EVSP 507 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~-~p~~ 507 (624)
..|..|...|.-.|+++.|+...+.-. +.+|-.. .-..+..+.++++-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 355566666677788999887765422 2233222 34567788888888999999999887743 2222 2245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc----C--CCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMEL----E--PNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
....+|..+|....++++|+.+..+=+.+ + ......+..|+.+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677888888888899998887765542 2 12456788999999999999999887766543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.004 Score=60.87 Aligned_cols=120 Identities=8% Similarity=-0.022 Sum_probs=89.4
Q ss_pred CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-CC-----CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 006955 365 ARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-IH-----DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438 (624)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 438 (624)
+.+.+......+++......+++.+..++-+.. .| -+.|..+++..|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 444555556667777777778888888877665 21 234567889999999999999999998888999999999
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhcc
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRF 485 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 485 (624)
++.++..+.+.|++..|.++...|.... .-.++.++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888887653 334556655444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.014 Score=46.31 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=66.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHH
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVV 479 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 479 (624)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+ |+ ......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 3456777889999999999999888766653 355667778888899999999999888753 43 22222344
Q ss_pred HHhhccCChHHHHHHHHHcc
Q 006955 480 DLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~ 499 (624)
-++...|+.++|++++-...
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 56677889999988887655
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0094 Score=58.37 Aligned_cols=124 Identities=12% Similarity=0.014 Sum_probs=96.0
Q ss_pred CCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC-CCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHH
Q 006955 431 DFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF-LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTV 509 (624)
Q Consensus 431 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (624)
+.+.+...+..++..+....+++.+..++-+...... ...-+.+..++++.|...|..+.++++++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3456677888888888888899999988888776421 112345556899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcc-CCCCCchHHHHHHHHHhc
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMEL-EPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~ 554 (624)
++.|+..+.+.|++..|.++...+... ...++.++..-..++.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988777653 344566655555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0015 Score=47.08 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=50.1
Q ss_pred HHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 480 DLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
..|.+.+++++|.++++++...+ +.++..|.....++...|++++|...++++++..|.++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 46778888999999998888742 33566777788888888999999999999998888655443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0043 Score=47.17 Aligned_cols=79 Identities=13% Similarity=0.013 Sum_probs=63.9
Q ss_pred hhhhhHhhcCCCchHHHHHHHHhHHcCC-CCCHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHHhCCCCCcchhH
Q 006955 304 NVMIFGLGENDLGEEGLKFFVQMKESGP-SPDNATFTSVLTICSDLP--------TLDLGRQIHAQAIKIARNQFTTVSN 374 (624)
Q Consensus 304 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (624)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++++...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999886643 2345667788888889999998888
Q ss_pred HHHHHhHh
Q 006955 375 AMITMYAR 382 (624)
Q Consensus 375 ~l~~~~~~ 382 (624)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88876654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.029 Score=48.60 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHc-----CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHH
Q 006955 332 SPDNATFTSVLTICS-----DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNS 406 (624)
Q Consensus 332 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (624)
..+..+|..++..+. +.|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- +.+ .+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------p~n--~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------PRN--FFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------ccc--HHHH
Confidence 556677777777664 457778888888888899999999999988887754 2211 000 1111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH-HHHHHHHHHhhh
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV-DQGRYYFDCMKN 464 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 464 (624)
+..- ...+-+-|++++++|...|+-||..++..++..+.+.+.. ....+..-.|.+
T Consensus 111 ~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 EFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred Hhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 1234567999999999999999999999999999887753 334444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0014 Score=41.44 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
.++..+..+|...|++++|++.++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788888999999999999999999999999888877764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0041 Score=60.25 Aligned_cols=63 Identities=8% Similarity=-0.028 Sum_probs=33.4
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP----TVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
...++.+..+|.+.|++++|+..|++.++ +.|+. ..|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555544 34442 23555555555555555555555555554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.74 Score=48.76 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=45.1
Q ss_pred HHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHc--CCCHHHHHHHhhhCCC-CCcc-hHHHHHHHHHhcCChHHHHHH
Q 006955 185 GYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVN--SRRIDAAISYFKQMPE-TCEK-TWNSIISVLIRNGLVKEAHSY 260 (624)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~a~~~ 260 (624)
-..+.|++..+.++...+.+.-...|-.-...... ...+++...++++-.. |-.. .-...+..+.+.+++.....+
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 34566777777777766643333222222221112 2235555555555432 2221 112223344445555555542
Q ss_pred HhhcCCCCcchhhHHHHHHHhcCChHHHHH
Q 006955 261 LEKYPYSNIASWTNVIVGYFEMGEVGSAIK 290 (624)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (624)
+.. .+.+.........+....|+.++|..
T Consensus 122 ~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~ 150 (644)
T PRK11619 122 SPE-KPKPVEARCNYYYAKWATGQQQEAWQ 150 (644)
T ss_pred cCC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 211 13333333444444555555444433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.073 Score=53.36 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=39.6
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCch-----------hHHHHHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDII-----------SWNSIICGL 411 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~~~~l~~~~ 411 (624)
+.+...+..|.++|..+-.. ..+++.+...++|++|..+-++.++ +++. -|.-.-.+|
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 33444455555555544332 2356666666777777666666652 2221 011122345
Q ss_pred HHcCChHHHHHHHHHHHH
Q 006955 412 AYHGYAEKALELFERMRL 429 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~ 429 (624)
-+.|+-.+|.++++++..
T Consensus 828 hkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHhcchHHHHHHHHHhhh
Confidence 566666666666666544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.06 Score=47.76 Aligned_cols=137 Identities=13% Similarity=0.060 Sum_probs=94.1
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHH-----H
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNA-----M 376 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 376 (624)
+.+.++..+...+.+.-.+..+++.++...+-+......+.+...+.||.+.+..+|+.+.+..-..+....+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566677777888888888888888866566667777788888888999999988887776544444433333 3
Q ss_pred HHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006955 377 ITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 440 (624)
...|.-+.++..|...+.+++ +.++..-|.-.-+....|+..+|++.++.|.+ ..|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 345666677778877777776 33455555555555567788888888888877 355544433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0065 Score=46.23 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=62.6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCC-CCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCCh
Q 006955 339 TSVLTICSDLPTLDLGRQIHAQAIKIAR-NQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYA 417 (624)
Q Consensus 339 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (624)
...+..|...+++.....+++.+.+.|+ -|+..+|+.++...++..-- ...-.++.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD-----------------------~~~ie~kl 85 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELD-----------------------SEDIENKL 85 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcccc-----------------------chhHHHHH
Confidence 3445566666888888888888888888 77777777776655543100 01112345
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
-..+.+|+.|...+++|+..||+.++..+.+
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 6778899999999999999999999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.032 Score=49.40 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=59.1
Q ss_pred HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHH-----HHH
Q 006955 441 GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGA-----LLG 515 (624)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-----l~~ 515 (624)
.++.++.-.|.+.-....+.++.+.. -+.++.....|++.-.+.||.+.|...|++..+..-..|..+.+. ...
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33334444444444444444444421 111344444444444555555555555554333221222222222 122
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+.-++++..|...+.++...+|.++...+.-+-+..-.|+..+|++.++.|+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344455555555555555555555555555555555555555555555555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.013 Score=53.97 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=69.6
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTV 509 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~ 509 (624)
.|...+......|++++|...|+...+.+ |+ +..+-.+...|...|++++|...|+.+.+. .|+ +..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 34444443455678888888888877754 53 246667888888888888888888887753 232 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+..+..++...|+.+.|...++++++..|.+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 55556667788899999999999988888543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.038 Score=46.22 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.+...++..+...|+++.|...+++++..+|-+...+..++.+|...|+..+|.++|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566777888999999999999999999999999999999999999999999999998753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.052 Score=49.62 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=79.4
Q ss_pred CCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCc-CH
Q 006955 433 KPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEV-SP 507 (624)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p-~~ 507 (624)
+-|...|..|...|...|+.+.|..-|.+..+. .| ++..+..+..++.... +..++..+|+++.. ..| +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~i 227 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANI 227 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccH
Confidence 335578888888888888888888888888873 34 6777777777665432 56778889999887 455 45
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
....-|...+...|++.+|...|+.+++..|.+.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5666677778899999999999999999887554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.027 Score=54.87 Aligned_cols=142 Identities=11% Similarity=0.152 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHH-CCCCCCh-hhHHHHHHHhcc---------cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 417 AEKALELFERMRL-TDFKPDD-ITFVGVLSACSY---------AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 417 ~~~a~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
.+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.++.++..+ +.| |+.....+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4556667777662 2245554 344444433221 1234455555555554 334 56666666666666
Q ss_pred cCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch--HHHHHHHHHhcCChHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV--YLILTEMYLSCGRREDAK 561 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~ 561 (624)
.|+++.|..+|++... +.|+ ..+|......+.-.|+.++|.+.++++++++|..... .-..+..|+.++ .++|+
T Consensus 351 ~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 6667777777777665 4454 4455555555566677777777777777777654333 222233444443 44444
Q ss_pred HHH
Q 006955 562 RIF 564 (624)
Q Consensus 562 ~~~ 564 (624)
.++
T Consensus 428 ~~~ 430 (458)
T PRK11906 428 KLY 430 (458)
T ss_pred HHH
Confidence 444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0028 Score=46.29 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMEL----EPN---NSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.+++.+..+|...|++++|+..+++++++ .+. -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666677777777766666652 111 13456777777777777777777776654
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.84 Score=46.02 Aligned_cols=384 Identities=11% Similarity=0.067 Sum_probs=180.9
Q ss_pred CcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCch-hHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHH
Q 006955 51 DMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDVV-TWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGAL 124 (624)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 124 (624)
+...+..++.---+..+++.+..++..+. -|... -|......-.+.|..+.+.++|++..+ | ++..|......+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFL 123 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556655555444445566666666665 23332 234444555667788888888888776 3 344455444444
Q ss_pred H-cCCChHHHHHHHHhccc------CChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHH---c-----
Q 006955 125 V-NCQRMDLAESYFKEMGA------RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLD---N----- 189 (624)
Q Consensus 125 ~-~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---~----- 189 (624)
. ..|+.+.....|+.+.. .+...|-..+..-..++++.....+++.+.+-...-++..-.-|.+ .
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~ 203 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKI 203 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhh
Confidence 4 45777777777777764 2455666667666777778888888777775433333333322221 1
Q ss_pred -CChhHHHHHHHHcccCCcccHHHHHHHHHcCCCH-HHHHHHhhhCCCCCcc---hHHHHHH-------HHHhcCChHHH
Q 006955 190 -GCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRI-DAAISYFKQMPETCEK---TWNSIIS-------VLIRNGLVKEA 257 (624)
Q Consensus 190 -g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~---~~~~ll~-------~~~~~~~~~~a 257 (624)
-..+++.++-........ -...+.. +......+....|... ..+.+.. .+...-.....
T Consensus 204 l~~~d~~~~l~~~~~~~~~---------~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 204 LLSIDELIQLRSDVAERSK---------ITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred hcCHHHHHHHhhhHHhhhh---------cccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 112222222221111000 0000111 1111111111111111 0111111 11111111122
Q ss_pred HHHHhhcC-----------CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCC---ceehhhhhhHhhcCCCchHHHHHH
Q 006955 258 HSYLEKYP-----------YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRD---VTVWNVMIFGLGENDLGEEGLKFF 323 (624)
Q Consensus 258 ~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 323 (624)
...++... ..+..+|...++.-.+.|+.+.+.-+|++..-+- ...|--.+.-....|+.+-|-.++
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 22222222 2334456667777777777777777777765441 123333333333346666666666
Q ss_pred HHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHH---HHhccCC--C
Q 006955 324 VQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSAL---LEFSSVP--I 398 (624)
Q Consensus 324 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~ 398 (624)
..-.+--++-.+.+-..-...+...|+.+.|..+++.+...- +.-..+-..-+....+.|+.+.+. .++.... .
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 554443333333222222223445567777777777776654 222222223344555666666665 3333222 1
Q ss_pred CCchhHHHHHHH-----HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006955 399 HDIISWNSIICG-----LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA 445 (624)
Q Consensus 399 ~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 445 (624)
.+....+.+.-- +.-.++.+.|..++.++.+. ++++...|..++..
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 122222222211 22345666677777666663 34444455555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.019 Score=54.51 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++..|..+|.+.+++..|++...+.++.+|+|...++.-+.+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 45555566666777777777777777777777777777777777777777777777766554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.13 Score=48.97 Aligned_cols=81 Identities=14% Similarity=0.003 Sum_probs=37.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCCh
Q 006955 181 LMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLV 254 (624)
Q Consensus 181 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 254 (624)
.....+.+..++.+|+..+....+- +..-|..-+..+...|++++|+--.+.-.+ ..+......-+++...++.
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence 3445556666677777777666552 222244444444445555554433332222 1222333344444444444
Q ss_pred HHHHHHH
Q 006955 255 KEAHSYL 261 (624)
Q Consensus 255 ~~a~~~~ 261 (624)
.+|.+.+
T Consensus 134 i~A~~~~ 140 (486)
T KOG0550|consen 134 IEAEEKL 140 (486)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.089 Score=52.78 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=10.6
Q ss_pred hhcCCCchHHHHHHHHhHH
Q 006955 310 LGENDLGEEGLKFFVQMKE 328 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~ 328 (624)
|.+.|+..+|..+++++-.
T Consensus 827 fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhcchHHHHHHHHHhhh
Confidence 3445556666666665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.025 Score=53.65 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=82.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..++..+.-+|.+.+++.+|++..++.+..+ +++...+-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4456778889999999999999999988854 567777777788999999999999999999999999988888888887
Q ss_pred HhcCChHHH-HHHHHHHHHC
Q 006955 552 LSCGRREDA-KRIFAQMKEN 570 (624)
Q Consensus 552 ~~~g~~~~A-~~~~~~m~~~ 570 (624)
.+..++++. .++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 777666554 7789888654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.086 Score=46.95 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhcCChHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSG---VYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 562 (624)
+..-|.+.|.+..|..-++.+++..|..+. ....++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345578899999999999999998886543 46788888999998885543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.93 Score=42.54 Aligned_cols=173 Identities=12% Similarity=-0.050 Sum_probs=69.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCh----hhHHHHHhcC--CCCCchhHHHHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNV----QGAKEVFDGM--EVRDVVTWNSMISG 92 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~l~~~ 92 (624)
+|..+....+.++...|..+-...+..-+..+|+..-...+.+++..|+. .++...+..+ ..++..+-...+.+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44444444455554444322222222222244444444455555555542 2344444433 23444444444444
Q ss_pred HHhCCCh-----hHHHHHhccCC-CCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCC-hHHHH
Q 006955 93 YVCNGLI-----DEALRVFHGMP-LKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGR-IVEAR 165 (624)
Q Consensus 93 ~~~~g~~-----~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 165 (624)
++..+.. ..+...+.... .++..+-...+.++++.++.+....+..-+..+|...-...+.++.+.+. ...+.
T Consensus 115 LG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~ 194 (280)
T PRK09687 115 TGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIR 194 (280)
T ss_pred HhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHH
Confidence 4433211 12222222221 23444444445555555543322222333333444444444444443321 12232
Q ss_pred HHhccC-CCCChhHHHHHHHHHHHcCC
Q 006955 166 KLFDKM-PAKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 166 ~~~~~~-~~~~~~~~~~l~~~~~~~g~ 191 (624)
..+..+ ..+|..+-...+.++++.|+
T Consensus 195 ~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 195 EAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 222222 23444455555555555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.16 Score=49.69 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 486 GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
....+|.+..++..+.+ +-|+.....+..+....|+++.|...|+++..++|+.+.++...++.....|+.++|.+.++
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666777766643 44666666666666666677777777777777777777777777777777777777777777
Q ss_pred HHHH
Q 006955 566 QMKE 569 (624)
Q Consensus 566 ~m~~ 569 (624)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 6444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.015 Score=54.84 Aligned_cols=265 Identities=12% Similarity=0.047 Sum_probs=141.6
Q ss_pred HHHhCCChHHHHHHhccCCCCCh-------hHHHHHHHHHHHcCChhHHHHHHHHc------c-c--CCcccHHHHHHHH
Q 006955 154 GLVREGRIVEARKLFDKMPAKDV-------QAWNLMIAGYLDNGCVGVAEDLFQKM------H-D--RDLTSWKQLINGL 217 (624)
Q Consensus 154 ~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~------~-~--~~~~~~~~l~~~~ 217 (624)
-+++.|+....+.+|+...+-.. ..|..|..+|.-.+++++|++.-..= . + ....+...|...+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 46778888888888777664322 24555666666666777776653211 0 0 0112333445555
Q ss_pred HcCCCHHHHHHHhhhCCC---------CCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHH
Q 006955 218 VNSRRIDAAISYFKQMPE---------TCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 288 (624)
--.|.+++|+....+-.. .....+..+...|...|..-.... +.+...++.=+. ..++.|
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~------pee~g~f~~ev~-----~al~~A 174 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA------PEEKGAFNAEVT-----SALENA 174 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC------hhhcccccHHHH-----HHHHHH
Confidence 556666666554433222 112233334444433332100000 000011110000 012233
Q ss_pred HHHHhhcC-------CC--CceehhhhhhHhhcCCCchHHHHHHHHhH----HcCCC-CCHHHHHHHHHHHcCCCCcHHH
Q 006955 289 IKVFELMT-------TR--DVTVWNVMIFGLGENDLGEEGLKFFVQMK----ESGPS-PDNATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 289 ~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a 354 (624)
.++|.+-. .+ -...|..|...|.-.|+++.|+..-+.-. +-|-+ .....+..+.+++.-.|+++.|
T Consensus 175 v~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 175 VKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 33333211 11 23466777777777888888877655422 12211 2234566777777888888888
Q ss_pred HHHHHHHHH----hCC-CCCcchhHHHHHHhHhhCCHHHHHHHhccCC---------CCCchhHHHHHHHHHHcCChHHH
Q 006955 355 RQIHAQAIK----IAR-NQFTTVSNAMITMYARCGNIQSALLEFSSVP---------IHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 355 ~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
.+.++.... .|- ......+-+|.+.|.-..++++|+..+.+-. .-...+|.++..+|...|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 887775433 222 1233445567788888888888888776543 11345677888888888888888
Q ss_pred HHHHHHHHH
Q 006955 421 LELFERMRL 429 (624)
Q Consensus 421 ~~~~~~m~~ 429 (624)
+...+.-.+
T Consensus 335 l~fae~hl~ 343 (639)
T KOG1130|consen 335 LYFAELHLR 343 (639)
T ss_pred HHHHHHHHH
Confidence 877766544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.3 Score=42.92 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=98.1
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH-HHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP-TVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 515 (624)
..|...+..-.+..-++.|+.+|-++.+..-+.+++.++++++..++ .|+..-|-++|+--.. .-||. ....-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 45666777777778899999999999987436678999999998776 6788899999987443 23444 44456666
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNN--SGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
-+..-+|-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+-++|..
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778899999999999777633222 55788888888888999888777766654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.35 Score=44.34 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=33.7
Q ss_pred HHHHHhhccCChHHHHHHHHHcccC--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRAD--GIEVSPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
.+.+.|.+.|.+..|+.-++.+++. +.+..+..+..++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4556666777777777666666543 11122345555666777777777776655443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.13 Score=45.21 Aligned_cols=145 Identities=14% Similarity=0.030 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC----CCCCcchHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF----LQPRSAHYTCVV 479 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~ 479 (624)
|+.....|..+|.++.|-..+++.-+. ...-+++.|++++++...-.. ..--...+..+.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 444556677777777666666654431 122233444444444332100 001133345556
Q ss_pred HHhhccCChHHHHHHHHHcccCC----CCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCCCCchHHHHHHH
Q 006955 480 DLLGRFGLIDEAMNLLNEIRADG----IEVSP-TVWGALLGACRIHNNIKVGEIAGERVME----LEPNNSGVYLILTEM 550 (624)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g----~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~ 550 (624)
+.|.+...+++|-..+.+-.... -.|+. ..+...|-.+.-..|+..|++.++...+ ..|.+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 66777777777665554422110 12222 2345555566677788888888888665 346677778888877
Q ss_pred HHhcCChHHHHHHHH
Q 006955 551 YLSCGRREDAKRIFA 565 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~ 565 (624)
| ..|+.+++.+++.
T Consensus 238 y-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKVLS 251 (308)
T ss_pred h-ccCCHHHHHHHHc
Confidence 6 4567777766553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.068 Score=46.39 Aligned_cols=112 Identities=14% Similarity=0.155 Sum_probs=77.3
Q ss_pred HHhccC--CCCCchhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhh
Q 006955 391 LEFSSV--PIHDIISWNSIICGLAY-----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMK 463 (624)
Q Consensus 391 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 463 (624)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+ |.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~------------ 101 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GK------------ 101 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CC------------
Confidence 344444 24566677777777764 46777788889999999999999999999987654 22
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN 522 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (624)
..|.. .+..+-..| -.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 102 ----fvp~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 102 ----FVPRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----ccccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11211 111111111 23456789999999999999999999999998866553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.4 Score=41.45 Aligned_cols=50 Identities=12% Similarity=-0.058 Sum_probs=20.1
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCC
Q 006955 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQR 129 (624)
Q Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (624)
.+|..+....+..+...|..+....+..-+..+|+..-...+.+++..|+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 44444444444444444432222222222222444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.026 Score=46.76 Aligned_cols=90 Identities=9% Similarity=-0.129 Sum_probs=64.6
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (624)
....+...|++++|..+|+-+.. ..| ++..+..|..++-..+++++|+..|......+ .-|+...-....++...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 33445677888888888887776 345 66667778888888888888888887755432 23444455566777888
Q ss_pred CChHHHHHHHHHHHc
Q 006955 521 NNIKVGEIAGERVME 535 (624)
Q Consensus 521 g~~~~a~~~~~~~~~ 535 (624)
|+.+.|+..|+.+++
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888888877
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.3 Score=49.69 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh-----hhHHHHHHHhc----ccChHHHHHHHHHHhhhhcCCCCCcc
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTD-FKPDD-----ITFVGVLSACS----YAGLVDQGRYYFDCMKNKYFLQPRSA 473 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 473 (624)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..+. ...+.+.|.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 4455566666777777777777765532 22111 12333333222 2467888999999999864 7766
Q ss_pred hHH-HHHHHhhccCChHHHHHHHHHcccCC--C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH-
Q 006955 474 HYT-CVVDLLGRFGLIDEAMNLLNEIRADG--I-EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT- 548 (624)
Q Consensus 474 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~- 548 (624)
.|. .-.+.+...|+.++|++.+++..... . +.....+--+...+...+++++|...+.++.+.+......|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 655 34556677899999999999866421 1 112345556667788899999999999999998776555554444
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHH
Q 006955 549 EMYLSCGRR-------EDAKRIFAQMKE 569 (624)
Q Consensus 549 ~~~~~~g~~-------~~A~~~~~~m~~ 569 (624)
-++...|+. ++|.+++.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 456677888 888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.2 Score=40.14 Aligned_cols=162 Identities=19% Similarity=0.155 Sum_probs=92.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-CC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc---
Q 006955 410 GLAYHGYAEKALELFERMRLTDF-KP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR--- 484 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 484 (624)
.-.+.|++++|...|+.+..... .| ...+...++.++.+.++.+.|+..+++-.+.++-.||.. |...+.++..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcc
Confidence 34556667777777766665321 11 123455555566666777777776666666554444332 2222222221
Q ss_pred ----cCChHHH---H----HHHHHcccCCCCcCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 485 ----FGLIDEA---M----NLLNEIRADGIEVSPTVWG------------ALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 485 ----~g~~~~A---~----~~~~~~~~~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
..|...+ . +++++...+...||...-- .+..-|.+.|.+..|..-++.+++.-|..+
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 1222222 2 2222333333344433221 223457899999999999999999777655
Q ss_pred ch---HHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 542 GV---YLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 542 ~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
.+ +..+..+|...|..++|.+.-+ ....+.+
T Consensus 202 ~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p 235 (254)
T COG4105 202 AVREALARLEEAYYALGLTDEAKKTAK-VLGANYP 235 (254)
T ss_pred chHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCC
Confidence 44 6677778999999999998855 4444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.044 Score=53.35 Aligned_cols=61 Identities=15% Similarity=-0.001 Sum_probs=31.9
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcc----hHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA----HYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
..++.+..+|...|++++|...+++..+ +.|+.. .|..+..+|...|+.++|++.++++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555555555555555554 334321 245555555555555555555555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.15 Score=45.33 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
....+...|++.+|...|+++... -|+. .....++.++.+.|+++.|...+++..+.+.-.|.. .+...+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~ 87 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGL 87 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHH
Confidence 344555666677777777766653 2221 234445556666666666666666666643211111 111111111
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-----------------hHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG-----------------VYL 545 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~ 545 (624)
+......... ......+...+|...++.+++..|+++- .-.
T Consensus 88 ~~~~~~~~~~----------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 88 SYYKQIPGIL----------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHH-----------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccch----------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000000 0011223344556666666666664432 223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 546 ILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+++.|.+.|.+..|..-++.+.+.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5678899999999999999998776
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.18 Score=40.82 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=58.0
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch-HHHHHHH--HH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEV---SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV-YLILTEM--YL 552 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~--~~ 552 (624)
.....+.|++++|++.|+.+... .+- ....-..|+.+|.+.|+++.|...+++.++++|.++.+ |.....+ +.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33445677888888888777654 121 34456667778888888888888888888888877655 3333333 33
Q ss_pred hcCC---------------hHHHHHHHHHHHHC
Q 006955 553 SCGR---------------REDAKRIFAQMKEN 570 (624)
Q Consensus 553 ~~g~---------------~~~A~~~~~~m~~~ 570 (624)
.+.. ..+|..-|+++.+.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 3333 55666666666544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.4 Score=40.02 Aligned_cols=196 Identities=19% Similarity=0.136 Sum_probs=122.0
Q ss_pred chhHHHHHHhHhhCCHHHHHHHhccCC-----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-
Q 006955 371 TVSNAMITMYARCGNIQSALLEFSSVP-----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLS- 444 (624)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 444 (624)
.........+...+++..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 344445555566666666655555432 2233445555566666677777777777776643222 122222222
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC----CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP----RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRI 519 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 519 (624)
.+...|+++.+...+++... ..| ....+......+...++.+.+...+.+..... .. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHH
Confidence 56777888888888887744 222 22333334444566778888888888877632 22 35667777777777
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++++.|...+..+....|.....+..+...+...|..+++...+.+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888887655666677777766677888887777765543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.079 Score=42.47 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCCCcchHHHHHHHhhccCChHHHHHHHHHcccC-CCCcCHHHHHHHHHHH
Q 006955 468 LQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-GIEVSPTVWGALLGAC 517 (624)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~ 517 (624)
+.|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4555666666666666666666666665554332 3444555666555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.1 Score=40.93 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=48.4
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC----chHHHHHHHHHhcCC
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS----GVYLILTEMYLSCGR 556 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 556 (624)
++...|+.+.|++.|.+.+.. .+..+..|+.-.+++.-+|+.++|..-+++++++..... ..|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344556666666666655542 122455666666666666666666666666665442221 124455555556666
Q ss_pred hHHHHHHHHHHHHCC
Q 006955 557 REDAKRIFAQMKENG 571 (624)
Q Consensus 557 ~~~A~~~~~~m~~~~ 571 (624)
-+.|..=|+..-..|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.019 Score=48.07 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
+..+...|++++|..+.+.+... .| +...|..+|.+|...|+..+|.++|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~---dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALAL---DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33344455555555555555542 23 4555555555555555555555555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.01 Score=43.28 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=45.5
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccC----CC-CcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GI-EVS-PTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
..+++.+...|...|++++|++.+++..+. |- .|+ ..++..+..++...|++++|+++++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345677788888888888888888776532 11 122 446677778888888888888888887764
|
... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.3 Score=45.14 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=91.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHH----HHHHhhccCCh
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTC----VVDLLGRFGLI 488 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~ 488 (624)
..|+..+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++.-. ..|+...|.. +..++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346666666667776664 4445555555556677777777766666666643 3455544443 33444567777
Q ss_pred HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN----NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
++|.+..++..+.+ +-|...-.++.......|+++++.++..+-...-.. -...|-+.+-.+...+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777776632 335555566666666777777777766554432210 1223555666666677777777777
Q ss_pred HHHH
Q 006955 565 AQMK 568 (624)
Q Consensus 565 ~~m~ 568 (624)
++=.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.21 Score=40.45 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=50.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCC
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDD---ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGL 487 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 487 (624)
..+.|++++|.+.|+.+... .+.+. ..-..++.++.+.|++++|...+++.++.+.-.|+ ..|...+.+++....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 34555566666666555543 11111 23344555555555555555555555553322222 123333333322222
Q ss_pred hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
.+ ..+..+. +..-| .+....|...|+++++..|++.
T Consensus 98 ~~---~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DE---GSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hh---hHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 11 1111111 11111 2235678888888888888543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.92 Score=35.92 Aligned_cols=140 Identities=12% Similarity=0.118 Sum_probs=76.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHH
Q 006955 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEA 491 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 491 (624)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456666677776666542 233334433333333333444445555444432222 23344444
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+..+-.+- .+.......+.+...+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..++.+++.+..+.|
T Consensus 76 i~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 76 IECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44433322 2233445556667788888888888888886555589999999999999999999999999999999
Q ss_pred Cc
Q 006955 572 VK 573 (624)
Q Consensus 572 ~~ 573 (624)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 74
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.096 Score=41.98 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=51.5
Q ss_pred hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 436 DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
..++..++.++++.|+++....+++.. .|+.++...- .+. --......|+..++.+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 445666666666666666666665432 2343322110 000 1223335677777777777
Q ss_pred HHHhcCChHHHHHHHHHHHccCC--CCCchHHHHHHH
Q 006955 516 ACRIHNNIKVGEIAGERVMELEP--NNSGVYLILTEM 550 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~ 550 (624)
++...|++..|.++.+...+..| -+..++..|.+-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777777777777777666443 233445555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.48 Score=48.28 Aligned_cols=119 Identities=17% Similarity=0.061 Sum_probs=85.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHhcccChHHHHHHHHHHhhhh-cCCCC-CcchHHHHHHHhhccCChHH
Q 006955 414 HGYAEKALELFERMRLTDFKPDDITFVGVL-SACSYAGLVDQGRYYFDCMKNK-YFLQP-RSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 490 (624)
..+.+.|.++++.+.+ --|+...|...- +.+...|++++|++.+++.... ...+. ....+--++..+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4567889999999988 478877665544 3566779999999999975531 11111 34455667888899999999
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHHc
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGAC-RIHNNI-------KVGEIAGERVME 535 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~~~~ 535 (624)
|.+.+.++.+.. .-+..+|.-+..+| ...|+. ++|..+++++-.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998754 34555665555554 567777 777777777665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.65 Score=42.56 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=83.6
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
.....|+..+|...|+..... .| +...--.++++|...|+.+.|..++..+...--.........-+..+....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 456778888888888888774 34 56677788899999999999999999887532122222211222222222222
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+.. -+++-...+|.|...-..|+..|...|+.++|.+.+-.+.++.
T Consensus 220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2222 2334445788899999999999999999999999877776653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.41 E-value=1 Score=44.52 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHHHHHccCCCCC
Q 006955 525 VGEIAGERVMELEPNNS 541 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~ 541 (624)
.|.+.+.++.+.+|.-|
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46677888888777544
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.14 Score=46.29 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=63.0
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHH
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV---SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLIL 547 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 547 (624)
.|+.-+.+ .+.|++..|...|...++.. +- .+..+-.|..++...|+++.|...|..+.+-.|.. |..+.-|
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 45554443 35666777777777766531 11 12344457777778888888888887777755544 4557777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 006955 548 TEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+.+..+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77778888888888888777654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.08 E-value=4.5 Score=41.10 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=119.2
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVPIH---DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
..++...+..-.+.|+.+.+.-+|++...| -...|-..+.-....|+.+-|..++....+-.++-.+.+...-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 345556666677788888888888877643 23345555555555688888888887776643332232222222335
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHH---HHHHHcccCCCCcC--HHHHHHHHHH-HHh
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAM---NLLNEIRADGIEVS--PTVWGALLGA-CRI 519 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~--~~~~~~l~~~-~~~ 519 (624)
...|+++.|..+++.+.+. . |+ +..-..-+....+.|..+.+. +++.........+. ...+....+- +..
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 5678999999999999986 3 64 333334455566788888887 55554443222222 1122222222 456
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
.++.+.|..++.++.+..|.+-..|..++.....++
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 789999999999999999988888999998877665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.06 Score=31.40 Aligned_cols=32 Identities=31% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.|..+..++...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566666777777777777777777777743
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.7 Score=39.10 Aligned_cols=157 Identities=14% Similarity=0.103 Sum_probs=97.4
Q ss_pred hHhhCCHHHHHHHhccCCCC---C---chhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHhc---cc
Q 006955 380 YARCGNIQSALLEFSSVPIH---D---IISWNSIICGLAYHGYAEKALELFERMRLT-DFKPDDITFVGVLSACS---YA 449 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~---~~ 449 (624)
-.+.|++++|.+.|+.+... + ..+--.++.++.+.++++.|+...++.... +-.||. -|...|.+++ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 34567777777777776621 1 223444566677888888888888887763 223333 3333333222 21
Q ss_pred ----Ch---HHHHHHHHHHhhhhcCCCCCcch------------------HHHHHHHhhccCChHHHHHHHHHcccCCCC
Q 006955 450 ----GL---VDQGRYYFDCMKNKYFLQPRSAH------------------YTCVVDLLGRFGLIDEAMNLLNEIRADGIE 504 (624)
Q Consensus 450 ----g~---~~~a~~~~~~~~~~~~~~p~~~~------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 504 (624)
.+ ...|..-|+.+..++ ||+.- =..+.+.|.+.|.+..|..-+++|.+. .+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~ 198 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YP 198 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cc
Confidence 12 345556666666653 43211 123567789999999999999999876 33
Q ss_pred cCHH---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 505 VSPT---VWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 505 p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
-++. .+-.+..+|...|-.++|...-.-+....|+++
T Consensus 199 ~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 199 DTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3333 444556788999999999888766665666443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=6.2 Score=41.78 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred chHHHHHHHHHcCCChhhHHHHHhcCCCCCchh----HHHHHHHHHhCCChhHHHHHhccCCC-CCcccHHHHHHHHHcC
Q 006955 53 FTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVT----WNSMISGYVCNGLIDEALRVFHGMPL-KDVVSWNLVIGALVNC 127 (624)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~ 127 (624)
.....-+..+.+..-++-|+.+-..-. .+..+ ......-+.+.|++++|...|-+... -++ ..++.-|...
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLda 410 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDA 410 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCH
Confidence 344556677777777888887765444 23333 33344445578999999988876654 121 2345555555
Q ss_pred CChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCCCCChh--HHHHHHHHHHHcCChhHHHHHHHHc
Q 006955 128 QRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQ--AWNLMIAGYLDNGCVGVAEDLFQKM 202 (624)
Q Consensus 128 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 202 (624)
.....-..+++.+.+ .+...-+.|+.+|.+.++.++..+..+... .... -....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 566666666666665 356677888999999999999888887766 2222 2344566667777777777766655
Q ss_pred ccCCcccHHHHHHHHHcCCCHHHHHHHhhhCC
Q 006955 203 HDRDLTSWKQLINGLVNSRRIDAAISYFKQMP 234 (624)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 234 (624)
.. ...... -.+-..+++++|++.+..+.
T Consensus 490 ~~-he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 490 KK-HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred cc-CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 44 222222 22334677888888888775
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.052 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.18 Score=42.91 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=26.5
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+.+.++.|+.-..++++++|....++..-+.+|.+..++++|++=|+++.+
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445555555555555555554444444445555555555555555544443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=3.1 Score=37.67 Aligned_cols=199 Identities=14% Similarity=0.089 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCc-hhHHHHHH-
Q 006955 335 NATFTSVLTICSDLPTLDLGRQIHAQAIKI-ARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDI-ISWNSIIC- 409 (624)
Q Consensus 335 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 409 (624)
...+......+...+....+...+...... ........+......+...++...+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344445555555556666665555554442 2233334444555666666777777777776652 222 22333333
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKP----DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
.+...|+++.+...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence 68889999999999999855 344 2233333444466788999999999998874 223 36778888888999
Q ss_pred cCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 485 FGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.++++.|...+..... ..|+ ...+..+...+...|..+.+...+.+..+..|.
T Consensus 215 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999886 3444 455556666666777899999999999999985
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.2 Score=43.10 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=39.8
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCC-------CceehhhhhhHhhc---CCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 274 NVIVGYFEMGEVGSAIKVFELMTTR-------DVTVWNVMIFGLGE---NDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
.++-+|....+++..+++++.+... ....-.....++.+ .|+.++|+.++..+....-.+++.||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666666543 11111223344455 6777777777777555555666666665555
Q ss_pred HH
Q 006955 344 IC 345 (624)
Q Consensus 344 ~~ 345 (624)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.32 Score=45.01 Aligned_cols=116 Identities=12% Similarity=0.038 Sum_probs=92.6
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH----HHHHHHHHHHHhcCCh
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP----TVWGALLGACRIHNNI 523 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~ 523 (624)
..|+.-+|-..++++.+++ +.|...+..--.+|.-.|+.+.-...++++... ..||. .+...+.-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4577778888889988864 347777877778888889888888888887653 23443 3333444455789999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
++|++..+++++++|.|....-.++.++...|++.++.++..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999999999999999999999999998764
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=6.8 Score=44.02 Aligned_cols=251 Identities=11% Similarity=0.029 Sum_probs=141.1
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCCh-hHHHHHhccCCCCCcccHHH
Q 006955 41 MCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLI-DEALRVFHGMPLKDVVSWNL 119 (624)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 119 (624)
..+.+.+..+|+.+-...+..+.+.+..+....+...+..+|..+-...+.++.+.+.. .....+...+..+|+.....
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 34445555777777777777777777654434444444455555555555544443221 11111222222366666666
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhH-HHHH
Q 006955 120 VIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGV-AEDL 198 (624)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~ 198 (624)
.+.++...+..+ ...+...+..+|+..-...+.++...+..+. +......++..+-...+.++...+..+. +...
T Consensus 704 A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 704 ALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHH
Confidence 666665443221 2234455555677666667777766655433 2233445667776677777776665442 2333
Q ss_pred HHH-cccCCcccHHHHHHHHHcCCCHHHHHH-HhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHH
Q 006955 199 FQK-MHDRDLTSWKQLINGLVNSRRIDAAIS-YFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVI 276 (624)
Q Consensus 199 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 276 (624)
+.. +.++|...-...+..+...|....+.. +...+.+++...-...+.++...+..+....+...+..++..+-...+
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHH
Confidence 333 345676677777777877777655433 334444566666677777777777654444444444477777777777
Q ss_pred HHHHhcCChHHHHHHHhhc
Q 006955 277 VGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~~ 295 (624)
.++.+.+....+...+...
T Consensus 860 ~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 860 LALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHhccCCCHHHHHHHHHH
Confidence 7777753333455555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.56 E-value=7 Score=40.86 Aligned_cols=116 Identities=7% Similarity=0.055 Sum_probs=68.4
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHcCCC---hhhHHHHHhcCCC--CCchhHHHHHHHHHhCCC
Q 006955 27 MIRGYFKNGFLDNAMCLFNQMPERD---MFTYNTVIAGLMQSDN---VQGAKEVFDGMEV--RDVVTWNSMISGYVCNGL 98 (624)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 98 (624)
++.-+...+.+.-|+++-..+..|. ..+|..-..-+.+..+ -+-+..+-+++.. ..-..|..+.+.....|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 4555666777888888777776554 4455555555554422 2223333333333 344567777777778888
Q ss_pred hhHHHHHhccCCC--------CCcccHHHHHHHHHcCCChHHHHHHHHhccc
Q 006955 99 IDEALRVFHGMPL--------KDVVSWNLVIGALVNCQRMDLAESYFKEMGA 142 (624)
Q Consensus 99 ~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (624)
.+-|..+++.=.+ -+..-+...+.-+...||.+-...++-++..
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 8888887754322 1223455556666677777777766666553
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.3 Score=38.38 Aligned_cols=91 Identities=23% Similarity=0.138 Sum_probs=66.6
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH---HHHHHhc
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL---LGACRIH 520 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l---~~~~~~~ 520 (624)
+.+..|+++.|++.|.+... +-| +...||.-..++--.|+.++|++-+++..+..-.-......+. ...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 45678889999998888776 445 7888999889998899999999988887765322232222222 2346788
Q ss_pred CChHHHHHHHHHHHccCC
Q 006955 521 NNIKVGEIAGERVMELEP 538 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p 538 (624)
|+.+.|..-|+.+.++..
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 899999888888877654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.91 Score=41.63 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHccc---CCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCc-
Q 006955 163 EARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVNSRRIDAAISYFKQMPETCE- 238 (624)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 238 (624)
...++++.+..+....-..-.......|++.+|..+|..... .+...--.++.+|...|+.+.|..++..+.....
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence 344445555444332233334455667788888887777765 2344566677778888888888888887764211
Q ss_pred ---chHHHHHHHHHhcCChHHHHHHHhhcC--CCCcchhhHHHHHHHhcCChHHHHHHHhhcC
Q 006955 239 ---KTWNSIISVLIRNGLVKEAHSYLEKYP--YSNIASWTNVIVGYFEMGEVGSAIKVFELMT 296 (624)
Q Consensus 239 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 296 (624)
.....-+..+.+.....+...+-.... +.|...-..+...+...|+.+.|.+.+-.+.
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111122333444333333333333333 3455555566666667777777666554443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.42 E-value=1 Score=44.48 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=29.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+.---+..++..-.+.-++..+ +.|+..+...++ +-.....+.++.+++++..+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK 228 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH
Confidence 3333455566666666666665 566654332222 22334456677777766554
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.41 Score=43.34 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=56.1
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC-CCCc-CHHHHHHHHHHHHhcCCh
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-GIEV-SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~~~g~~ 523 (624)
...|++..|..-|..-.+.+.-.+ .+..+-.|..++...|++++|..+|..+.+. +-.| -+..+--|..+....|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344556666666666665431111 2344555677777777777777777666543 1112 134555555566677777
Q ss_pred HHHHHHHHHHHccCCCCCc
Q 006955 524 KVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~ 542 (624)
++|...++++.+..|..+.
T Consensus 232 d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 232 DEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHHCCCCHH
Confidence 7777777777777775443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.4 Score=36.67 Aligned_cols=88 Identities=20% Similarity=0.099 Sum_probs=50.0
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChH
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQPRS-AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
-.+.++.+.+..+++.+.- +.|.. ..-..-...+.+.|+|.+|+.+|+++.+. .|....-..|+..|.....-.
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCCh
Confidence 3455677777777777665 55642 22233455567788888888888887653 354444455555554332222
Q ss_pred HHHHHHHHHHccCC
Q 006955 525 VGEIAGERVMELEP 538 (624)
Q Consensus 525 ~a~~~~~~~~~~~p 538 (624)
.=..+..++++..|
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 22333444555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.84 Score=42.87 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=70.6
Q ss_pred HHHHHHhcccChHHHHHHHHHHhhhhcC--CCC--CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCcCHHHHH
Q 006955 440 VGVLSACSYAGLVDQGRYYFDCMKNKYF--LQP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVSPTVWG 511 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~ 511 (624)
.++..++...+.++++.+.|+...+-.. -.| ...++..|...|.+..|+++|.-...+..+. ++..=...|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3445566666677777777776554211 011 3456667777777777777766555443321 1111112222
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHccC--CCC----CchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 512 -----ALLGACRIHNNIKVGEIAGERVMELE--PNN----SGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 512 -----~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.+.-++...|..-.|.+..+++.++. ..| ......++++|...|+.+.|..-|++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22344566777777777777666522 112 233556677777777777766655543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=9.8 Score=40.41 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=30.4
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
++..+.+..+.+.+..+.+...+ -+|..|..++..+.+.+..+.-.+...+.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 34455566666666666666553 266667777766666665544444444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.5 Score=44.14 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=86.7
Q ss_pred HhhcCCCchHHHHHHH--HhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCH
Q 006955 309 GLGENDLGEEGLKFFV--QMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (624)
...-.++++++.+..+ ++.. .+ | ......++.-+.+.|..+.|.++-.+-. .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3455677777666654 1221 11 2 3335566666667777777776654321 234556677788
Q ss_pred HHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 387 QSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
+.|.++.++.. +...|..|.......|+++-|++.|++... |..++-.|...|+.+...++.+......
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88877776665 455788888888888888888877777543 4455555666677666666665554431
Q ss_pred CCCCCcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 467 FLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 467 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
-++....++.-.|+.++..+++.+.-
T Consensus 404 -------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 -------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13334444455577777776666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=10 Score=40.49 Aligned_cols=384 Identities=7% Similarity=-0.030 Sum_probs=177.8
Q ss_pred ChHHHHHHHhhCCC-CC-cchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCC---
Q 006955 36 FLDNAMCLFNQMPE-RD-MFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMP--- 110 (624)
Q Consensus 36 ~~~~A~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 110 (624)
..++...++++... |- ...-..-+..+++.+++......+ .-.+.+...-.....+....|+.++|......+-
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~-~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS-PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 45555555555542 21 122233344555677777777733 2224455555667777777888766655555443
Q ss_pred CCCcccHHHHHHHHHcCCCh------------------HHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCC
Q 006955 111 LKDVVSWNLVIGALVNCQRM------------------DLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP 172 (624)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~------------------~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 172 (624)
...+..++.++..+...|.+ ..|..+...+..........++..+. +...+...+....
T Consensus 160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~ 236 (644)
T PRK11619 160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG 236 (644)
T ss_pred CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC
Confidence 13345566666666544433 33333222221111111122222222 2222222222221
Q ss_pred CCChhHHHHHHHHH--HHcCChhHHHHHHHHcccCCcc-------cHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcchH
Q 006955 173 AKDVQAWNLMIAGY--LDNGCVGVAEDLFQKMHDRDLT-------SWKQLINGLVNSRRIDAAISYFKQMPE--TCEKTW 241 (624)
Q Consensus 173 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 241 (624)
++...-..++.++ ....+.+.|..++......... .+..+.......+...+|...+..... .+....
T Consensus 237 -~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~ 315 (644)
T PRK11619 237 -PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLL 315 (644)
T ss_pred -CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHH
Confidence 1111111111111 1234567788888776443221 234444333444335566666666543 244444
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchH
Q 006955 242 NSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEE 318 (624)
Q Consensus 242 ~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (624)
.--+......++++.+...+..+. .....-..=+..++...|+.++|...|+.+... ...|..|...- .|..-.
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~--Lg~~~~ 392 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQR--LGEEYP 392 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHH--cCCCCC
Confidence 555555557788887777777765 222222334566666678888888888887543 22333222111 111100
Q ss_pred -----HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHh
Q 006955 319 -----GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEF 393 (624)
Q Consensus 319 -----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (624)
.-..-..+. -.| -..-+..+...|....+...+..+... .+..-...+...-.+.|..+.++...
T Consensus 393 ~~~~~~~~~~~~~~---~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 393 LKIDKAPKPDSALT---QGP----EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred CCCCCCCchhhhhc---cCh----HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 000000000 001 112223344567777777777766653 22233344444455566666665544
Q ss_pred ccCCC------CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 006955 394 SSVPI------HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI 437 (624)
Q Consensus 394 ~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 437 (624)
..... .-+..|...+..++....++.++-.----.+.++.|+..
T Consensus 463 ~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 463 IAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred hhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 33221 112235555555555445555443333333455666543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.86 E-value=3.2 Score=34.24 Aligned_cols=126 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG 483 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 483 (624)
...++..+...+.+......++.+...+ ..+...++.++..|++.+ .+.....++. .++.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445566666666777777777776655 244556666666665543 2333333331 122333344566666
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH-NNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
+.+.++++..++.++.. +...+..+... ++.+.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 66667777777766542 12222223333 666777666664 224555655555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.44 Score=46.28 Aligned_cols=142 Identities=9% Similarity=0.086 Sum_probs=93.9
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGE 527 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 527 (624)
..|++-.|.+-+....+.. +-++.............|+++.+...+...... +.....+...+++.....|.+++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3466655554444444432 223444444444556778888888887665432 3445567788888888888888888
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCC
Q 006955 528 IAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGD 594 (624)
Q Consensus 528 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (624)
...+.++..+-.++.+....+......|-++++...|++....+.+.+.| |+-...-.+.|.+|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCcc
Confidence 88888888776677776666666667788888888888887766555555 666555666665444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.81 E-value=2.8 Score=34.54 Aligned_cols=119 Identities=11% Similarity=0.134 Sum_probs=49.8
Q ss_pred HHHHHHcCCChhhHHHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHH
Q 006955 58 VIAGLMQSDNVQGAKEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAE 134 (624)
Q Consensus 58 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (624)
++..+...+.+......++.+. ..+...++.++..|++.. ..+.++.++. ..+......+++.|.+.+-++.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 4444444444444444444433 123334455555554432 2233333331 123333444555555555555555
Q ss_pred HHHHhcccCChhHHHHHHHHHHhC-CChHHHHHHhccCCCCChhHHHHHHHHH
Q 006955 135 SYFKEMGARDVASWTIMVNGLVRE-GRIVEARKLFDKMPAKDVQAWNLMIAGY 186 (624)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 186 (624)
-++.++.. +...+..+... ++.+.|.+.+.+. .++..|..++..+
T Consensus 90 ~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 90 ELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred HHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 55544432 12222222222 4555555555432 2334444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.64 E-value=2 Score=43.20 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=86.9
Q ss_pred HHHHhCCChhHHHHHhc--cCCC-CCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHH
Q 006955 91 SGYVCNGLIDEALRVFH--GMPL-KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKL 167 (624)
Q Consensus 91 ~~~~~~g~~~~a~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 167 (624)
....-.|+++.+.+..+ ++.. -+..-.+.+++.+-+.|-.+.|.++.+ |+ ..-.+...+.|+++.|.++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHHHH
Confidence 34455677777655543 2221 123346777777777888888877653 22 2334456678888888888
Q ss_pred hccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHH
Q 006955 168 FDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISV 247 (624)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 247 (624)
.++.. +...|..|.....+.|+++-|++.|++..+ +..|+-.|...|+.+.-.++.+.....+ -++....+
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~~ 411 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQA 411 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHH
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHHH
Confidence 77654 566888888888888888888888887753 4456666666676655555544432211 23444444
Q ss_pred HHhcCChHHHHHHH
Q 006955 248 LIRNGLVKEAHSYL 261 (624)
Q Consensus 248 ~~~~~~~~~a~~~~ 261 (624)
+.-.|+.++..+++
T Consensus 412 ~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 412 ALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 44555555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.4 Score=37.68 Aligned_cols=144 Identities=12% Similarity=0.020 Sum_probs=80.1
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh------hhHHHHHHHh
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD------ITFVGVLSAC 446 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~ 446 (624)
++.....|..+|.++.|-..+++.. -.....++++|+++|++...- +..+. ..+..+-..+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHhhhHh
Confidence 3444555666665555544333221 123345677777777776542 11111 2333444456
Q ss_pred cccChHHHHHHHHHHhhhhc-CCC--CC-cchHHHHHHHhhccCChHHHHHHHHHcccC---CCCcCHHHHHHHHHHHHh
Q 006955 447 SYAGLVDQGRYYFDCMKNKY-FLQ--PR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD---GIEVSPTVWGALLGACRI 519 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~-~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~ 519 (624)
.+...+++|-..+.+-..-. .+. |+ -..|-..|-.|.-..++..|.++++.-.+. .-+-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 66677776655554322110 011 11 123555666777788999999999984432 1233566888888887 6
Q ss_pred cCChHHHHHHH
Q 006955 520 HNNIKVGEIAG 530 (624)
Q Consensus 520 ~g~~~~a~~~~ 530 (624)
.||.+++..++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 78888876664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.1 Score=34.21 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcc-hHHH--
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSA-HYTC-- 477 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~-- 477 (624)
..|...++ +++.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-....+ |-+. -...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHH
Confidence 34444443 467788999999999999876543222 2223344567889999999999998875322 3211 1112
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
-...+...|.++....-++.+...|-+.....-..|.-+-.+.|++..|.+.|+.+.+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2334567899999998888888766555666777888888899999999999999887
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.17 Score=30.06 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
++..|+.+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998854
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.32 Score=45.10 Aligned_cols=92 Identities=12% Similarity=0.013 Sum_probs=52.6
Q ss_pred HHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC
Q 006955 444 SACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN 522 (624)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (624)
.-|.+.|.+++|+..+..... +.| |+.++..-..+|.+..++..|..-....+... ..-...|..-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 345666667777766666554 345 66666666666666666666666555555321 1112233333444445566
Q ss_pred hHHHHHHHHHHHccCCC
Q 006955 523 IKVGEIAGERVMELEPN 539 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~ 539 (624)
..+|.+-++.++++.|+
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 66666666666666664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.02 E-value=15 Score=40.89 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=94.5
Q ss_pred CChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCc
Q 006955 128 QRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDL 207 (624)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 207 (624)
++++.|..-+.++. ...|.-.++.--+.|-+.+|..++..=.+.-...|.+....+.+.+.+++|.-+|+..-+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 56666666666554 334555556666777788888776544444445566666667777888888887776643
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcch---HHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCC
Q 006955 208 TSWKQLINGLVNSRRIDAAISYFKQMPETCEKT---WNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGE 284 (624)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (624)
....+.+|..+|+|.+|+.+..++..+-... -..|..-+...++.-+|-+++...... ....+..|++...
T Consensus 968 --lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 968 --LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----PEEAVALLCKAKE 1041 (1265)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----HHHHHHHHhhHhH
Confidence 2235667777888888888888776532222 255666666677666666665443311 1223344555555
Q ss_pred hHHHHHHHhhc
Q 006955 285 VGSAIKVFELM 295 (624)
Q Consensus 285 ~~~A~~~~~~~ 295 (624)
+++|.++-...
T Consensus 1042 ~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1042 WEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHhc
Confidence 66666554433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.85 E-value=8.6 Score=36.23 Aligned_cols=17 Identities=12% Similarity=-0.281 Sum_probs=10.9
Q ss_pred HHhcCChHHHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERV 533 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~ 533 (624)
+.+.++++.|...|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45666777777766644
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.23 Score=31.14 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=17.7
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.+..+...|.+.|++++|+++|+++++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666777777776666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.61 Score=43.00 Aligned_cols=61 Identities=31% Similarity=0.378 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
++..++..+...|+++.+...++++.+.+|-+...|..++.+|...|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455555666666666666666666666666666677777777777777766666666654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.69 E-value=6.5 Score=34.42 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (624)
-+..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+-+...-+. .|+...-...
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LW 172 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDPFRSLW 172 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCChHHHHH
Confidence 345778777778888888888888888877 34432 22222222445567888777665554443 2322211111
Q ss_pred HHHhhccCChHHHHHHHHH-cccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------CchHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNE-IRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN-------SGVYLILTEM 550 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~-~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~ 550 (624)
+-.-...-++.+|..-+.+ .. ..|..-|...+-.+.- |... .+.+++++.....++ ..+|..|++-
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 1112234466666654443 33 3444455544433321 1111 123344444433322 3578899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCC
Q 006955 551 YLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
|...|+.++|..+|+-....++
T Consensus 247 ~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhH
Confidence 9999999999999987766543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.60 E-value=16 Score=43.92 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 507 PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
..+|-...+.+...|.++.|....-.+.+..+ +..+...++.+...|+...|+.++++..+...+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 45888899999999999999999999988774 688999999999999999999999998876543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.57 E-value=11 Score=36.89 Aligned_cols=148 Identities=9% Similarity=-0.037 Sum_probs=78.9
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC--Ccch
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKP---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP--RSAH 474 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 474 (624)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+..+-..|+..+|...++...... +.. ++..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~-~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR-LSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcccccc
Confidence 34567778888888888888888888877643222 22333333445556677788888877776621 111 1111
Q ss_pred HHHHHHHhhccCChHHHHHHHHH-c-ccCCCCcCHHHHHHHHHHHHh------cCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNE-I-RADGIEVSPTVWGALLGACRI------HNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~-~-~~~g~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
...+...+.. ....... - .......-..++..+..-+.. .++.+.+...|..+.+..|.....+..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111111100 0000000 0 000000011222223333333 378889999999999999988888888
Q ss_pred HHHHHHhc
Q 006955 547 LTEMYLSC 554 (624)
Q Consensus 547 l~~~~~~~ 554 (624)
++..+...
T Consensus 298 ~a~~~~~~ 305 (352)
T PF02259_consen 298 WALFNDKL 305 (352)
T ss_pred HHHHHHHH
Confidence 77766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=22 Score=40.00 Aligned_cols=255 Identities=9% Similarity=-0.037 Sum_probs=157.6
Q ss_pred hHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCh-HHHHHHHHhcccCChhHH
Q 006955 70 GAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRM-DLAESYFKEMGARDVASW 148 (624)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 148 (624)
....+.+.+..+|+.+-...+..+.+.+.......+...+..++...-...+.++.+.+.. .....+...+..+|+.+-
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 3345555556788888888888888887655444444444456666666666666554322 122223333444677777
Q ss_pred HHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHH-HH
Q 006955 149 TIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDA-AI 227 (624)
Q Consensus 149 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~ 227 (624)
...+..+...+.. ....++..+..+|..+-...+..+.+.+..+ .+.....+++..+-...+.++...+..+. +.
T Consensus 702 ~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~ 777 (897)
T PRK13800 702 AAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAG 777 (897)
T ss_pred HHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhH
Confidence 7777776654322 1234445556777777777777777665443 34444556677777777777777665443 33
Q ss_pred HHhhh-CCCCCcchHHHHHHHHHhcCChHHHHH-HHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhh
Q 006955 228 SYFKQ-MPETCEKTWNSIISVLIRNGLVKEAHS-YLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNV 305 (624)
Q Consensus 228 ~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 305 (624)
..+.. +.++|+..-...+.++...|....+.. +...+..++..+-...+.++...+..+....+...+..++...-..
T Consensus 778 ~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 778 DAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHH
Confidence 43444 445788888888888888887655433 3333446676777778888888877555555555556677776667
Q ss_pred hhhHhhcCCCchHHHHHHHHhHH
Q 006955 306 MIFGLGENDLGEEGLKFFVQMKE 328 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~m~~ 328 (624)
.+.++.+......+...+....+
T Consensus 858 A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 858 AVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhccCCCHHHHHHHHHHHh
Confidence 77777665444567777776665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.5 Score=37.79 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=67.2
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC--CCCch----H
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEP--NNSGV----Y 544 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~~~~----~ 544 (624)
..+..+.+.|.+.|+.+.|.+.+.++.+....|. ...+-.++..+...|++..+.....++..... .+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566788899999999999999999887655554 33667788888889999999999888877332 22211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 006955 545 LILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
..-+-.+...|++.+|.+.|-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 1222234567899999988853
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.07 E-value=18 Score=38.19 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=81.8
Q ss_pred HHHHHcCCChhhHHHHHhcCC--CC---CchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHH
Q 006955 59 IAGLMQSDNVQGAKEVFDGME--VR---DVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLA 133 (624)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (624)
++-+.+.+.+++|+.+.+... .| -..+....+..+.-.|++++|-...-.|...+..-|..-+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 344556666777777666554 11 2345666677777777777777777777666666666666666665555433
Q ss_pred HHHHHhccc-CChhHHHHHHHHHHhCCChHHHHHHhccCC-------------C-------CChhHHHHHHHHHHHcCCh
Q 006955 134 ESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFDKMP-------------A-------KDVQAWNLMIAGYLDNGCV 192 (624)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------~-------~~~~~~~~l~~~~~~~g~~ 192 (624)
..++-.-.. -++..|..++..+.. .+...-.+...+.. + .+...-..|+..|...+++
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccCh
Confidence 333221111 144556555555544 33333222222222 0 0222334477777888888
Q ss_pred hHHHHHHHHcccCCc
Q 006955 193 GVAEDLFQKMHDRDL 207 (624)
Q Consensus 193 ~~A~~~~~~~~~~~~ 207 (624)
.+|.+++-...+.++
T Consensus 522 ~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 522 EKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHhccChHH
Confidence 888888877766543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.48 Score=41.71 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=70.0
Q ss_pred hhccCChHHHHHHHHHcccCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVSPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
|....++..|+..|.+.+. +.|+.. .|+.=+.++.+..+++.+..-..+++++.|+.......|+........+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 4445677888888877766 678764 4556666778889999999999999999998888899999999999999999
Q ss_pred HHHHHHHHH
Q 006955 561 KRIFAQMKE 569 (624)
Q Consensus 561 ~~~~~~m~~ 569 (624)
+..+.+...
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 999998843
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.29 Score=28.40 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666667777777777777777777766
|
... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.81 E-value=37 Score=41.12 Aligned_cols=363 Identities=13% Similarity=0.077 Sum_probs=187.0
Q ss_pred HHHHHHHhCCChHHHHHHhccC----CCC--ChhHHHHHHHHHHHcCChhHHHHHHHH-cccCCcccHHHHHHHHHcCCC
Q 006955 150 IMVNGLVREGRIVEARKLFDKM----PAK--DVQAWNLMIAGYLDNGCVGVAEDLFQK-MHDRDLTSWKQLINGLVNSRR 222 (624)
Q Consensus 150 ~l~~~~~~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 222 (624)
.|..+-.++|.+.+|.-.++.- .+. ...-+..+...|+.-++++...-+... ..+++ ...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4445666888888888888873 222 223445555588888888888777763 32222 2344555667889
Q ss_pred HHHHHHHhhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHH-HHHHHhcCChHHHHHHHhhc
Q 006955 223 IDAAISYFKQMPE--TC-EKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNV-IVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 223 ~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 295 (624)
+..|...|+.+.+ |+ ..+++-++......|.++......+-.. .+...-++.+ +.+..+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 9999999998886 43 5578888888878888877776655555 2222223332 334466677777666655
Q ss_pred CCCCceehhhh--hhHhhcCCCchH--HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcc
Q 006955 296 TTRDVTVWNVM--IFGLGENDLGEE--GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTT 371 (624)
Q Consensus 296 ~~~~~~~~~~l--~~~~~~~~~~~~--a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (624)
..+..+|... .....+..+-+. -.+..+-+++.-+.| +.+|+..|.+..
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~------------------ 1595 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVR------------------ 1595 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHH------------------
Confidence 4455566554 222222222221 112333333221111 112222221111
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCC-----CchhHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCC-----hhh
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIH-----DIISWNSIIC---GLAYHGYAEKALELFERMRLTDFKPD-----DIT 438 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~ 438 (624)
.|..++..+.-.. .+.-.+.+...... +..-|-.-+. .+.+..++- +.+=+.+......|+ ..+
T Consensus 1596 ~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epI--La~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1596 SYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPI--LAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHH--HHHHHHHHHHhccccccchhHHH
Confidence 1222222222111 11111111111111 1111221111 111111111 111111111112222 246
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCC-------cCHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIE-------VSPTVWG 511 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-------p~~~~~~ 511 (624)
|....+.+-..|.++.|...+-.+.+.. -+..+--.+..+...|+-..|+.++++..+...+ +.+..-+
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR----LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcc----cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 7777777777889998887776666531 2444555667778889999999998887654311 1233333
Q ss_pred HHHHH--------H-HhcCC--hHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 512 ALLGA--------C-RIHNN--IKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 512 ~l~~~--------~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
.++.. | ...|+ .+..++.|..+.++.|.....+..++.-|
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 33322 2 12333 34557788888888887777777777443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.75 E-value=25 Score=39.16 Aligned_cols=141 Identities=11% Similarity=0.000 Sum_probs=80.9
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 452 (624)
+.-.++.-.+.|-+++|+.++.--...--..|.+...-+.....+++|.-+|+..-+ ..-.+.+|..+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444444555555555554332222223455555556667777777777766432 12346677888888
Q ss_pred HHHHHHHHHhhhhcCCCCCcch--HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAH--YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
.+|..+..++... -+... -..|+..+...++.-+|-+++.+... .|.. .+..+++...+++|.+..
T Consensus 982 r~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 982 REALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred HHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHH
Confidence 8888887765531 12222 24677777888888888888887763 3321 223344455566666655
Q ss_pred HHHH
Q 006955 531 ERVM 534 (624)
Q Consensus 531 ~~~~ 534 (624)
....
T Consensus 1050 ~~~~ 1053 (1265)
T KOG1920|consen 1050 SKAK 1053 (1265)
T ss_pred Hhcc
Confidence 5444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.91 Score=41.87 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=46.8
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcc-----cCCCCcCHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIR-----ADGIEVSPTVWG 511 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~~ 511 (624)
++..++..+...|+.+.+...++++.. ..| +...|..++.+|.+.|+...|+..|+++. +.|+.|.+.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~---~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE---LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 334455555666666666666666665 345 66667777777777777777777666543 346666666555
Q ss_pred HHHHH
Q 006955 512 ALLGA 516 (624)
Q Consensus 512 ~l~~~ 516 (624)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.57 E-value=6 Score=31.57 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 405 NSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
...+..+...|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.++-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445555555555555555555442 245555555555555555655555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.35 Score=28.66 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
|..|...|...|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666777777777777777777543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.5 Score=35.83 Aligned_cols=72 Identities=10% Similarity=-0.077 Sum_probs=34.3
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGA-LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
..++.+++..+++.|.- +.|+..-... -...+...|++.+|.++++.+.+..|..|..-..++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34555555555555544 3443322221 222344555555555555555555544444444444455555543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.8 Score=35.99 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=54.4
Q ss_pred hHHHHHHHh---hccCChHHHHHHHHHcccCCCCcCHHHHHHH-HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 474 HYTCVVDLL---GRFGLIDEAMNLLNEIRADGIEVSPTVWGAL-LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 474 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
+.+.|++.. .+.++.+++..++..+.- +.|.......+ ...+...|++.+|.++++.+.+..|..+..-..++.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344444433 466778888888877765 56654443332 344567788888888888877777766766667777
Q ss_pred HHHhcCChH
Q 006955 550 MYLSCGRRE 558 (624)
Q Consensus 550 ~~~~~g~~~ 558 (624)
++...|+.+
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 777777654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.93 E-value=25 Score=37.59 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=30.4
Q ss_pred cCChHHHHHHHHHHHccC---CCCCch-H-----HHHHHHHHhcCChHHHHHHHHHHH
Q 006955 520 HNNIKVGEIAGERVMELE---PNNSGV-Y-----LILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~---p~~~~~-~-----~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.|+..+.......+.... |+.... | ..+...|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666666655533 222222 2 244455778899999988877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.2 Score=40.27 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=70.5
Q ss_pred HHHHhhcC--CCCceehhhhhhHhh-----cCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCC------------
Q 006955 289 IKVFELMT--TRDVTVWNVMIFGLG-----ENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLP------------ 349 (624)
Q Consensus 289 ~~~~~~~~--~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 349 (624)
.+.|..+. ++|-.+|-+.+..+. +.+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 345556666665543 34566667777888899999999999999998775532
Q ss_pred ----CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCH
Q 006955 350 ----TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386 (624)
Q Consensus 350 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (624)
+-.-+..++++|..+|+-||..+-..|++++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345778888899999999988888888888887643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.5 Score=36.29 Aligned_cols=100 Identities=8% Similarity=0.028 Sum_probs=67.5
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRI 519 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 519 (624)
+...|++++|..-+..+... ++|. ...|..-..++.+.+.++.|++-..+.++ +.|+ ...+..-..+|-+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 45677888888877777764 2222 23455555677788899999988888876 3443 2233333446777
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
...++.|+.-|+++.+..|.....-...++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 889999999999999999976554444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.82 E-value=3.9 Score=34.30 Aligned_cols=129 Identities=18% Similarity=0.101 Sum_probs=86.9
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH-
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL- 514 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~- 514 (624)
..|...+. +.+.+..++|..-|..+.+. |...- +-..-.........|+...|+..|+++-.. .|.|....-+.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d--t~~P~~~rd~AR 135 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD--TSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc--CCCcchhhHHHH
Confidence 34444443 45667889999999988875 22111 111122344567889999999999998763 44444443332
Q ss_pred --HH--HHhcCChHHHHHHHHHHHc-cCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 515 --GA--CRIHNNIKVGEIAGERVME-LEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 515 --~~--~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.+ +..+|.++....-.+-+.. .+|-....-..|+-+-.+.|++.+|.+.|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23 4678888887776665543 4454556677899999999999999999998754
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.5 Score=38.46 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=45.8
Q ss_pred HHHHhccCC--CCCchhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 389 ALLEFSSVP--IHDIISWNSIICGLAYH-----GYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 389 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..|..+. ++|-.+|-.++..+..+ +..+-....++.|.+-|+.-|..+|+.|+..+-+
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 345566666 56777888888777643 5667777788999999999999999999987655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.53 E-value=9.9 Score=37.28 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC----CCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELEP----NNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
....+|..+...+.+.|.++.|...+.++....+ ..+.....-++.+...|+..+|...++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3456888999999999999999999999988552 256778888999999999999999999888743
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=90.48 E-value=20 Score=35.76 Aligned_cols=228 Identities=11% Similarity=0.033 Sum_probs=117.6
Q ss_pred HHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHH
Q 006955 28 IRGYFKNGFLDNAMCLFNQMP--ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRV 105 (624)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 105 (624)
+.++...| +.+...+-... .++...+.....++....+......+.+.+..++..+-...+.++...+.......+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 55666666 45666555554 234444444444444333333355555556666666777777777777766665555
Q ss_pred hccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHH
Q 006955 106 FHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAG 185 (624)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 185 (624)
..-...+++......+.++...+ .+-...+..-+..+|...-..-+.++...|+.+..-.+..-....|..+-..-+.+
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~-~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a 201 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHR-HDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA 201 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhc-cChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 55555566665555566665433 22222233333345666666666666666654433333333335566666666666
Q ss_pred HHHcCChhHHHHHHHH-cccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006955 186 YLDNGCVGVAEDLFQK-MHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYL 261 (624)
Q Consensus 186 ~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 261 (624)
....|. ..|...+.. ..+++......+...+...|. +++.+.+..+.+. ..+-...+.++...|+.....-+.
T Consensus 202 l~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d-~~vr~~a~~AlG~lg~p~av~~L~ 275 (410)
T TIGR02270 202 GLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA-AATRREALRAVGLVGDVEAAPWCL 275 (410)
T ss_pred HHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC-hhhHHHHHHHHHHcCCcchHHHHH
Confidence 677776 555555554 334444443333333332222 2444444444331 114445555555555554444333
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.81 Score=42.56 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=60.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG 486 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 486 (624)
.+-|.+.|.+++|+..|..... +.| |.+++..-..+|.+...+..|..-...+.... ..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 3568899999999999998776 567 88888888889999888887776555544310 001222333333333345
Q ss_pred ChHHHHHHHHHcccCCCCcCH
Q 006955 487 LIDEAMNLLNEIRADGIEVSP 507 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~ 507 (624)
...+|.+-++..++ +.|..
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 56666666666555 56663
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.28 E-value=27 Score=36.96 Aligned_cols=144 Identities=14% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHhCCChHHHHHHhccCCCC-----ChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHH
Q 006955 155 LVREGRIVEARKLFDKMPAK-----DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISY 229 (624)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (624)
+.+.+.+++|..+.+..... -.......|..+.-.|++++|-...-+|...+..-|..-+..+...++......+
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 34445555555554443321 1124444555555555555555555555555555555444444444444333322
Q ss_pred hhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHhhcC--------------------CCCcchhhHHHHHHHhcCChHHH
Q 006955 230 FKQMPE-TCEKTWNSIISVLIRNGLVKEAHSYLEKYP--------------------YSNIASWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 230 ~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------------------~~~~~~~~~l~~~~~~~g~~~~A 288 (624)
+-.-.. -++..|..++-.+.. .+...-.++...-. ..+......|+..|...+++..|
T Consensus 446 lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~A 524 (846)
T KOG2066|consen 446 LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKA 524 (846)
T ss_pred CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHH
Confidence 222111 133345555554444 22211111111111 11222334477788888888888
Q ss_pred HHHHhhcCCCC
Q 006955 289 IKVFELMTTRD 299 (624)
Q Consensus 289 ~~~~~~~~~~~ 299 (624)
+.++-.+.+++
T Consensus 525 l~~ylklk~~~ 535 (846)
T KOG2066|consen 525 LPIYLKLQDKD 535 (846)
T ss_pred HHHHHhccChH
Confidence 88887776653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.49 Score=27.34 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..+..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.2 Score=29.25 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=14.9
Q ss_pred CC-CcchHHHHHHHhhccCChHHHH
Q 006955 469 QP-RSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 469 ~p-~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
.| ++..|..+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 35 5666666666666666666654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.05 E-value=14 Score=33.43 Aligned_cols=182 Identities=10% Similarity=0.018 Sum_probs=95.5
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHH---HHHHHHHHHcCCCCcHHHHHHHHHHHHh---CC--CCCcchhHHHHHHhHh
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNA---TFTSVLTICSDLPTLDLGRQIHAQAIKI---AR--NQFTTVSNAMITMYAR 382 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~ 382 (624)
.+...+++|+.-|.+..+..-.-... .+..++....+.+++++....+.++... .+ ..+....|++++.-..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 34557889999998877643222333 3445666778888888888777766542 11 2234445566665555
Q ss_pred hCCHHHHHHHhccCC-----CCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCh-------hhHHHH
Q 006955 383 CGNIQSALLEFSSVP-----IHDI----ISWNSIICGLAYHGYAEKALELFERMRLTDF----KPDD-------ITFVGV 442 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~-------~~~~~l 442 (624)
..+.+--.+.++.-. ..+. .+-..+...|...+.+.+..++++++.+.-- ..|. ..|..=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 555444443333221 1111 1233455666666677777777766654311 1111 234444
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHH----HhhccCChHHHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVD----LLGRFGLIDEAM 492 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~ 492 (624)
+..|....+-.....+++....-...-|.+.+...+-. ...+.|++++|.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 44555555555555566554433223355544443321 233556676664
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=89.85 E-value=23 Score=35.40 Aligned_cols=178 Identities=9% Similarity=-0.069 Sum_probs=95.7
Q ss_pred HHHHHcCCChhhHHHHHhcCC--CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHH
Q 006955 59 IAGLMQSDNVQGAKEVFDGME--VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESY 136 (624)
Q Consensus 59 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (624)
+.++...| +.+...+.... .++...+.....++....+......+.+.+..++......+.+++...++......+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L 122 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWL 122 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHH
Confidence 55666666 44555444443 334444444444444333333345555555556666777888888888777766666
Q ss_pred HHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHH
Q 006955 137 FKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLING 216 (624)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 216 (624)
..-+..+++......+.++...+. +....+..-+..+|..+-..-+.+++..+..+..-.+..-....|..+-..-+.+
T Consensus 123 ~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~a 201 (410)
T TIGR02270 123 EPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEA 201 (410)
T ss_pred HHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHH
Confidence 666655676666666666654432 2222222223355666666666666666654433333333334555555555666
Q ss_pred HHcCCCHHHHHHHhhh-CCCCCcch
Q 006955 217 LVNSRRIDAAISYFKQ-MPETCEKT 240 (624)
Q Consensus 217 ~~~~~~~~~A~~~~~~-~~~~~~~~ 240 (624)
....|. .+|...+.. ..+++...
T Consensus 202 l~~lG~-~~A~~~l~~~~~~~g~~~ 225 (410)
T TIGR02270 202 GLLAGS-RLAWGVCRRFQVLEGGPH 225 (410)
T ss_pred HHHcCC-HhHHHHHHHHHhccCccH
Confidence 666665 444444443 33344433
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.40 E-value=19 Score=33.89 Aligned_cols=162 Identities=9% Similarity=-0.054 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 006955 403 SWNSIICGLAYHGYA---EKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~---~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (624)
+...++.+|...+.. ++|..+++.+... -|+ +..+..-+..+.+.++.+.+.+.+.+|.... .-....+...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHHH
Confidence 455666777766654 4466666666553 333 3344455666666888888888888888753 2133444444
Q ss_pred HHHhh--ccCChHHHHHHHHHcccCCCCcCHH-HHHHHH-H-H--HHhcCC------hHHHHHHHHHHHc--cCCCCCch
Q 006955 479 VDLLG--RFGLIDEAMNLLNEIRADGIEVSPT-VWGALL-G-A--CRIHNN------IKVGEIAGERVME--LEPNNSGV 543 (624)
Q Consensus 479 ~~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~-~-~--~~~~g~------~~~a~~~~~~~~~--~~p~~~~~ 543 (624)
+..+- .......|...+..+....+.|... ....++ . . ....++ .+....+++.+.+ ..|-++.+
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44442 1233456777777766555566553 222221 1 1 112111 3444444553333 22323322
Q ss_pred ---H----HHHHHHHHhcCChHHHHHHHHHHH
Q 006955 544 ---Y----LILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 544 ---~----~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
. -.-+....+.++|++|.+.++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 223445778999999999988543
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.30 E-value=9.5 Score=36.10 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHCCCCCChh--hHHHHHHHhcccCh--HHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 006955 418 EKALELFERMRLTDFKPDDI--TFVGVLSACSYAGL--VDQGRYYFDCMKNKYFLQPRSAHYTCVVD 480 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 480 (624)
+.++.+|+.+.+.|+..+.. ....++..+..... ..++.++++.+.+. ++++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45666777777767665542 23333332222222 33566666666664 56665555554433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.67 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+|..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.65 Score=25.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=17.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677777888888888877765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.48 E-value=3.3 Score=31.18 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+..+-++.+....+-|+|.+..+.+.+|.+.+|+..|.++++-+...-.+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 45666777777778899999999999999999999999999998875554444666664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.46 E-value=2.7 Score=36.44 Aligned_cols=78 Identities=19% Similarity=0.135 Sum_probs=58.0
Q ss_pred hhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC----CCCchHHHHHHHHHhcCCh
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP----NNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~ 557 (624)
..+.|+ +.|.+.|-++...+.--++.....|. .|....|.++++.++-+++++.+ .|+..+..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 345565 77888888888776444555544444 44457799999999999998543 2688899999999999999
Q ss_pred HHHH
Q 006955 558 EDAK 561 (624)
Q Consensus 558 ~~A~ 561 (624)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.44 E-value=2.9 Score=31.07 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+.-++.+-++.+....+-|++.+..+.+.+|.+.+|+..|.++++-+...-..+...|-.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34456666777777778899999999999999999999999999987754432444555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.16 E-value=24 Score=33.46 Aligned_cols=148 Identities=9% Similarity=0.132 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHhcc--c----ChHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCC--
Q 006955 418 EKALELFERMRLTDFKPDDITFVGVLSACSY--A----GLVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGL-- 487 (624)
Q Consensus 418 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~-- 487 (624)
++.+.+++.|.+.|++-+..++.+....... . ....+|..+++.|++.+.+-- +-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566778888888888887666553322222 2 235678888888888764422 23333333322 3333
Q ss_pred --hHHHHHHHHHcccCCCCcCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHH
Q 006955 488 --IDEAMNLLNEIRADGIEVSPT--VWGALLGACRIHNN--IKVGEIAGERVMELEPN-NSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 488 --~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A 560 (624)
.+.+..+|+.+.+.|+..+.. ....++..+-...+ ..++..+++.+.+..-. ....|..++-.-.-.+..++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 355667777777777766422 33333333322211 34666677777664422 223344444333333333244
Q ss_pred HHHHHHH
Q 006955 561 KRIFAQM 567 (624)
Q Consensus 561 ~~~~~~m 567 (624)
.+-+.++
T Consensus 237 ~~~i~ev 243 (297)
T PF13170_consen 237 VEEIKEV 243 (297)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.82 E-value=21 Score=32.44 Aligned_cols=242 Identities=15% Similarity=0.111 Sum_probs=136.7
Q ss_pred cCChHHHHHHHhhcCCC-------CceehhhhhhHhhcCCCchHHHHHHHHhHH---cCC--CCCHHHHHHHHHHHcCCC
Q 006955 282 MGEVGSAIKVFELMTTR-------DVTVWNVMIFGLGENDLGEEGLKFFVQMKE---SGP--SPDNATFTSVLTICSDLP 349 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~--~p~~~~~~~ll~~~~~~~ 349 (624)
..++++|+.-|+++.+. .......++..+.+.+++++.++.|++|.. +.+ .-+....++++.-.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34677777777776532 223455678888889999999888888753 111 234556777777777777
Q ss_pred CcHHHHHHHHHHHHh-----CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--------CC-------CchhHHHHHH
Q 006955 350 TLDLGRQIHAQAIKI-----ARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--------IH-------DIISWNSIIC 409 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~-------~~~~~~~l~~ 409 (624)
+.+....+++.-.+. +-..=-.+-+.|...|...|++.+..+++.++. .. -...|..-|+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 777776666643321 111111233457777877777777777766554 01 1246777788
Q ss_pred HHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHh-----cccChHHHHHHHHHHhhhhcCC--CCC---cchHHHH
Q 006955 410 GLAYHGYAEKALELFERMRLT-DFKPDDITFVGVLSAC-----SYAGLVDQGRYYFDCMKNKYFL--QPR---SAHYTCV 478 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l 478 (624)
.|....+-.+...++++.... .--|.+.... +++-| .+.|++++|..-|=++-+.+.- .|. ---|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888888888888876652 2345544443 44444 4568888876544333332211 121 1124455
Q ss_pred HHHhhccCChHHHHHHHHH--cccCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNE--IRADGIEVSPTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~--~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
.+.+.+.|- .-|+. +.--.-.|.......|+.+|.. ++..+-++++
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 556655541 01111 1111123444566777777743 3444444333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.79 E-value=11 Score=35.82 Aligned_cols=132 Identities=17% Similarity=0.064 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC---C--ChhhHHHHHHHhcccChHHHHHHHHHHhhhh---cCCCCCcchH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFK---P--DDITFVGVLSACSYAGLVDQGRYYFDCMKNK---YFLQPRSAHY 475 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~---p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~ 475 (624)
..++..++...+.++++++.|+...+---. | ....+..+...|.+..+.++|.-+..+..+- .++..-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334555666666777777777766542111 1 1135666667777777777777666554431 1211111111
Q ss_pred -----HHHHHHhhccCChHHHHHHHHHccc----CCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 476 -----TCVVDLLGRFGLIDEAMNLLNEIRA----DGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 476 -----~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
-.+.-++-..|+...|.+..++..+ .|-.| -......+...|...||.+.|..-|+.+..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 1234455566777777777766433 33333 244667777889999999999888888776
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.16 E-value=2.2 Score=37.16 Aligned_cols=113 Identities=16% Similarity=0.090 Sum_probs=78.6
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCC
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNN 522 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 522 (624)
.|-+.|-+.-|+--|..... +.|+ +..||.|.--+...|+++.|.+.|+...+ +.|. ..+...-.-++.-.|+
T Consensus 74 lYDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCc
Confidence 46677888888888877765 6784 77788888888899999999999999887 4553 2222222233456789
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHH--hcCChHHHHHHHH
Q 006955 523 IKVGEIAGERVMELEPNNSGVYLILTEMYL--SCGRREDAKRIFA 565 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~ 565 (624)
++.|.+-+-+--+-+|+||---. +.|. ..-++.+|..-+.
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~E~k~dP~~A~tnL~ 190 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRSL---WLYLNEQKLDPKQAKTNLK 190 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHHH---HHHHHHhhCCHHHHHHHHH
Confidence 99999999888888887763322 2233 2345666665443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.16 E-value=15 Score=31.72 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHH--HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchH-----HHHHHHhhccCChHHH
Q 006955 419 KALELFERMRLTDFKPDDITFV--GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHY-----TCVVDLLGRFGLIDEA 491 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A 491 (624)
+.....+++....-.....++. .+...+...+++++|...++..... |....+ -.|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5555556665532111111222 2334577788888888888876642 322222 2456677788999999
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
++.++...+.++. +.....-..++...|+-++|...|+++++..+
T Consensus 146 L~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 9998887754322 22233344667888899999999998888765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=7 Score=36.27 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..+.|-.+|...++++.|.+..+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 445666778999999999999999999999999989999999999999999999888887764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.79 E-value=8.6 Score=40.36 Aligned_cols=155 Identities=13% Similarity=0.048 Sum_probs=84.1
Q ss_pred HHcCChHHHHHHHHHHHH-------CCCCCChhhHHHHHHHhccc----C-hHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 412 AYHGYAEKALELFERMRL-------TDFKPDDITFVGVLSACSYA----G-LVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~----g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
....+.+.|+..++.+.+ .|. ......+..+|.+. . +.+.|..++...... | .|+....-..+
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHH
Confidence 344566677777666655 442 22334444444443 2 566677777776653 2 24443333333
Q ss_pred HHhhc-cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH--HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc-C
Q 006955 480 DLLGR-FGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC--RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC-G 555 (624)
Q Consensus 480 ~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 555 (624)
..... ..+...|.++|......|. ++...+..++-.. ....+.+.|..++.++.+.++ +.+...+...+... +
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccc
Confidence 32223 2456788888888777663 3333333322222 234577888888888877773 33333333333222 7
Q ss_pred ChHHHHHHHHHHHHCCCcc
Q 006955 556 RREDAKRIFAQMKENGVKK 574 (624)
Q Consensus 556 ~~~~A~~~~~~m~~~~~~~ 574 (624)
+++.+.-.+..+.+.|.+.
T Consensus 412 ~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEV 430 (552)
T ss_pred cccHHHHHHHHHHHhhhhH
Confidence 7777777777777666543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.5 Score=26.72 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
++.|...|...|++++|+.++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.6 Score=26.63 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999998764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.99 E-value=8.7 Score=33.17 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc------ch
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS------AH 474 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 474 (624)
.+..+...|.+.|+.+.|++.|.++.+....|.. ..+..++......+++..+...+.++........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556667777777777777777777765444443 244556666666677777776666665431110011 11
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcc
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
|..+ .+...+++..|-+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 1234567777777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.60 E-value=19 Score=29.65 Aligned_cols=52 Identities=21% Similarity=0.159 Sum_probs=35.6
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
..++.+++..+++.+.- +.|+ ...-..-...+...|+|.+|+.+|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777788888777765 5563 2222334556678899999999999888743
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.48 E-value=5.6 Score=26.08 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
.+.-++.+.|+++.|.+..+.+++.+|.|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45556789999999999999999999966443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.9 Score=24.79 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999987654
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.26 E-value=1.2 Score=25.31 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++..++.+|...|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677889999999999999999998765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.84 E-value=19 Score=32.14 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHcccC--CCCcCHHHHHHHH---HHHHhcCChHHHHHHHHHHHccCCCCCch-------HHHHHHHHHh
Q 006955 486 GLIDEAMNLLNEIRAD--GIEVSPTVWGALL---GACRIHNNIKVGEIAGERVMELEPNNSGV-------YLILTEMYLS 553 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~~~~~ 553 (624)
.+++.|+..|++.-+- |-..+...-..++ ..-...+++.+|+.+|++.....-+|+-. +..-+-++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4556666666554321 1112222222333 33356789999999999988865544432 1222222223
Q ss_pred cCChHHHHHHHHHHHHC
Q 006955 554 CGRREDAKRIFAQMKEN 570 (624)
Q Consensus 554 ~g~~~~A~~~~~~m~~~ 570 (624)
.++.=.+...+++-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQEL 224 (288)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 35555556666655444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.73 E-value=1.8 Score=24.58 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
-.+..++...|++++|...++++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34556677788888888888888888774
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.56 E-value=2.1 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.05 E-value=5.7 Score=30.00 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 419 KALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+.++.+.+ +....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHH
Confidence 4555566666666788888888888888888888888888887777643 3333565554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.95 E-value=0.68 Score=43.18 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=53.6
Q ss_pred cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
.|.++.|++.+...+... +|....|..-..++.+.+....|++-+..+++++|+....|-.-..+....|+|++|.+.+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 455666666666655532 2334444444455566666666666666666666666666666666666666777776666
Q ss_pred HHHHHCCCcc
Q 006955 565 AQMKENGVKK 574 (624)
Q Consensus 565 ~~m~~~~~~~ 574 (624)
....+.+...
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 6666655433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.73 E-value=3 Score=34.50 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=34.5
Q ss_pred hhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006955 305 VMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHA 359 (624)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 359 (624)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4555666667777777777777765545556666667777777766666666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.70 E-value=3.7 Score=34.81 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 488 IDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHN-----------NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
+++|+.-|++.+. +.|+ ..++..+..++...+ -+++|...|+++...+|.| ..|..-....
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~---- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH----
Confidence 3444555555554 5565 346666665554322 3567777788888899944 4555444443
Q ss_pred ChHHHHHHHHHHHHCCCc
Q 006955 556 RREDAKRIFAQMKENGVK 573 (624)
Q Consensus 556 ~~~~A~~~~~~m~~~~~~ 573 (624)
.+|-++..++.+.+..
T Consensus 124 --~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 124 --AKAPELHMEIHKQGLG 139 (186)
T ss_dssp --HTHHHHHHHHHHSSS-
T ss_pred --HhhHHHHHHHHHHHhh
Confidence 4577788777776643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.17 E-value=3.9 Score=37.86 Aligned_cols=51 Identities=12% Similarity=-0.000 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhh
Q 006955 415 GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
-++++++.++..=.+-|+.||..+++.++..+.+.++..+|.++.-.+...
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 356788888887788888888888888888888888888887777766654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.10 E-value=53 Score=32.86 Aligned_cols=298 Identities=10% Similarity=0.071 Sum_probs=154.0
Q ss_pred HhcCChHHHHHHHhhCC---C--CC-----cchHHHHHHHHHcCC-ChhhHHHHHhcCC---CCCc----hhHHHHHHHH
Q 006955 32 FKNGFLDNAMCLFNQMP---E--RD-----MFTYNTVIAGLMQSD-NVQGAKEVFDGME---VRDV----VTWNSMISGY 93 (624)
Q Consensus 32 ~~~g~~~~A~~~~~~~~---~--~~-----~~~~~~l~~~~~~~~-~~~~A~~~~~~~~---~~~~----~~~~~l~~~~ 93 (624)
.-..|++.|..-+++.. + |+ ..+++.|...+.... .+..+..+++... +..+ .....|+...
T Consensus 58 ~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 58 RYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 34567777777777665 1 21 256777777777665 6777777777655 2222 1234566677
Q ss_pred HhCCChhHHHHHhccCCC-CCc--ccHHHHHHHHH------c---CCChHHHHHHHHhccc---CChh-------HHHH-
Q 006955 94 VCNGLIDEALRVFHGMPL-KDV--VSWNLVIGALV------N---CQRMDLAESYFKEMGA---RDVA-------SWTI- 150 (624)
Q Consensus 94 ~~~g~~~~a~~~~~~~~~-~~~--~~~~~l~~~~~------~---~~~~~~a~~~~~~~~~---~~~~-------~~~~- 150 (624)
.-..++..|.+++.--.. .|+ .+|..++..+. - ..++..+.....++.+ +|+. .|..
T Consensus 138 ~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~l 217 (629)
T KOG2300|consen 138 IIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVL 217 (629)
T ss_pred hhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 778888889888765543 222 23333332222 1 2334444444444443 2321 1211
Q ss_pred HHHHHHhCCChHHHHHHhccCC-------------------CCChh-------------HHHH-----HHHHHHHc--CC
Q 006955 151 MVNGLVREGRIVEARKLFDKMP-------------------AKDVQ-------------AWNL-----MIAGYLDN--GC 191 (624)
Q Consensus 151 l~~~~~~~g~~~~a~~~~~~~~-------------------~~~~~-------------~~~~-----l~~~~~~~--g~ 191 (624)
-+.-|.-.|+...+...++.+. .|.+. +|.. +..+|.+. ..
T Consensus 218 ql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~ 297 (629)
T KOG2300|consen 218 QLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKY 297 (629)
T ss_pred HHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHH
Confidence 1233455666665555554432 11111 1111 11222211 22
Q ss_pred hhHHHHHHHHcccCCcc----------cHHHHHHHHHcCCCHHHHHHHhhhCCC-----CCcc-------hHHHHHH-HH
Q 006955 192 VGVAEDLFQKMHDRDLT----------SWKQLINGLVNSRRIDAAISYFKQMPE-----TCEK-------TWNSIIS-VL 248 (624)
Q Consensus 192 ~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-------~~~~ll~-~~ 248 (624)
.|+|+...++.++.|.. ....++-+=.-.|++.+|++-+..|.+ |.+. ....++. .+
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 34444444555444421 122223333457888888887777764 3311 1222333 34
Q ss_pred HhcCChHHHHHHHhhcC----CCCcchh--hHHHHHHHhcCChHHHHHHHhhcCCCCceehhhh--------hhH--hhc
Q 006955 249 IRNGLVKEAHSYLEKYP----YSNIASW--TNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVM--------IFG--LGE 312 (624)
Q Consensus 249 ~~~~~~~~a~~~~~~~~----~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--------~~~--~~~ 312 (624)
...|.++.|+.-|..+. ..+...+ ..+.-.|.+.|+.+.-.++++.+..++..++..- +.+ ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55677788877766655 2222222 2345567778887777778877776655443321 111 244
Q ss_pred CCCchHHHHHHHHhHHc
Q 006955 313 NDLGEEGLKFFVQMKES 329 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~ 329 (624)
.+++.+|...+++-.+.
T Consensus 458 qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKM 474 (629)
T ss_pred hccHHHHHHHHHHHHhh
Confidence 67788888777775543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.08 E-value=75 Score=34.56 Aligned_cols=217 Identities=14% Similarity=0.076 Sum_probs=108.2
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcc-------hhHHHH-HHhHhhCCHHHHHHHhccCC--------CCCchhHHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTT-------VSNAMI-TMYARCGNIQSALLEFSSVP--------IHDIISWNSIICG 410 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~ 410 (624)
...++++|..+..++...-..|+.. .++++- ..-...|+++.|+++-+... ...+..+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 3455666666666555443232221 111111 12233567777766554332 3355667777788
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh---hHHHHH--HHhcccChHH--HHHHHHHHhhhhcCC-CC----CcchHHHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDI---TFVGVL--SACSYAGLVD--QGRYYFDCMKNKYFL-QP----RSAHYTCV 478 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll--~~~~~~g~~~--~a~~~~~~~~~~~~~-~p----~~~~~~~l 478 (624)
..-.|++++|..+.++..+..-.-+.. .|..+. ..+...|... +....+......+.- .| -..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888899999988887765532222322 222222 2355566332 233333333322111 11 12334444
Q ss_pred HHHhhccCChHHHHHHHHHcccCC--CCcCHH----HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-Cch-HH-----
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADG--IEVSPT----VWGALLGACRIHNNIKVGEIAGERVMELEPNN-SGV-YL----- 545 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~-~~----- 545 (624)
..++.+ .+.+..-.....+.| ..|.+. .+..|+......|+.++|.....++..+.-.. +.. |.
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444444 333333333322222 123222 22256677788999999999888887743222 222 11
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 006955 546 ILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~ 566 (624)
.-......+|+.+++...+.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 112223467888888887765
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.06 E-value=7.6 Score=29.00 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
.-++.+-++.+....+.|++....+.+++|-+.+++..|.++|+.++.+.+ .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 334555566666666788888888888888888888888888887775432 2333454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.5 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+...+...|+++.|...++++++..|
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33334444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.27 E-value=5.3 Score=34.98 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=58.5
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC--CCCcCHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEVSPTVWGALL 514 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~ 514 (624)
|.+..++.+.+.+.+++++...+.-.+. +| +...-..++..|+-.|+|++|..-++-.-.. ...+-...|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 4556677788889999999988887764 46 7888889999999999999999877765441 1344566888887
Q ss_pred HHH
Q 006955 515 GAC 517 (624)
Q Consensus 515 ~~~ 517 (624)
.+-
T Consensus 80 r~e 82 (273)
T COG4455 80 RCE 82 (273)
T ss_pred HHH
Confidence 663
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.22 E-value=11 Score=32.64 Aligned_cols=86 Identities=20% Similarity=0.128 Sum_probs=60.2
Q ss_pred HHHHHcCCChHHHHHHHHhccc-CChh-----HHHHHHHHHHhCCChHHHHHHhccCCCCChhH--HHHHHHHHHHcCCh
Q 006955 121 IGALVNCQRMDLAESYFKEMGA-RDVA-----SWTIMVNGLVREGRIVEARKLFDKMPAKDVQA--WNLMIAGYLDNGCV 192 (624)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~-~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 192 (624)
...+...+++++|...++.... +.-. +-..|.......|.+|.|.++++....++-.. ...-.+.+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 4556678888888888887764 3222 22344566778888888888888887764333 44456778888888
Q ss_pred hHHHHHHHHcccCC
Q 006955 193 GVAEDLFQKMHDRD 206 (624)
Q Consensus 193 ~~A~~~~~~~~~~~ 206 (624)
++|...|++....+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888877653
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.87 E-value=13 Score=34.32 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
++......|..+|.+.+|.++.++++.++|-+...+-.|+..|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455678899999999999999999999999999999999999999777777777664
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.80 E-value=56 Score=32.20 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=112.5
Q ss_pred hCCHHHHHHHhccCC----CCCchhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHhcccChHH
Q 006955 383 CGNIQSALLEFSSVP----IHDIISWNSIICG-LAYHGYAEKALELFERMRLTDFKPDDI----TFVGVLSACSYAGLVD 453 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~----~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 453 (624)
.|+..++.+.+..+. ++....|-.|+.+ .....++.+|+++|+..+- .-|... ....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 578888888888776 3345566677665 4456689999999998876 455543 3444445567889999
Q ss_pred HHHHHHHHhhhhcCCCCCcc-hHHHHHHHhhccC---ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHH
Q 006955 454 QGRYYFDCMKNKYFLQPRSA-HYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIA 529 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 529 (624)
++..+-....+++.-.|-.. .+..+...+.+.+ ..+.-..++..|.. .--...|..+.+.-...|+.+.|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 98887777777654445222 2233444444443 33344444444431 11244788888888899999999999
Q ss_pred HHHHHccCCCCCchHHHHHHHHH-----hcCChHHHHHHHHHH
Q 006955 530 GERVMELEPNNSGVYLILTEMYL-----SCGRREDAKRIFAQM 567 (624)
Q Consensus 530 ~~~~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m 567 (624)
.+++..+.. ....-...+..|. -..+++++.+.+..+
T Consensus 280 s~~A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 280 SERALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999998764 3333333444443 234566666655544
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.75 E-value=67 Score=32.40 Aligned_cols=241 Identities=11% Similarity=0.086 Sum_probs=129.0
Q ss_pred HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCC------CcHHHHHHHHHHHHhC-C-CCCcchhHHHHHHhHhhCCHHH-H
Q 006955 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLP------TLDLGRQIHAQAIKIA-R-NQFTTVSNAMITMYARCGNIQS-A 389 (624)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~-A 389 (624)
...+|++..+. -|+...+...+..|...- .+.....+++...+.+ . +.....|..+.-.++......+ |
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 34566665543 455666666666553321 2334444455444332 2 2234445555555555444333 3
Q ss_pred HHHhccCCCCCchhHHHHHHHHHHc-CChHH-HHHHHHHHHHCCCCCChhhHHHHHHHhcccCh-HHHH--HHHHHHhhh
Q 006955 390 LLEFSSVPIHDIISWNSIICGLAYH-GYAEK-ALELFERMRLTDFKPDDITFVGVLSACSYAGL-VDQG--RYYFDCMKN 464 (624)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a--~~~~~~~~~ 464 (624)
..+....-..+...|-.-++..... .+++- -.+++...+..-..+-...|+... .|+ .+.. ..++.....
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 3333344445555555544444322 12221 122233333321222223333332 111 1111 112222222
Q ss_pred hcCCCCCcchH-HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH--HhcCChHHHHHHHHHHHccCCCCC
Q 006955 465 KYFLQPRSAHY-TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC--RIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 465 ~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
. ..|+..++ +.+.+-+.+.|-..+|.+++..+.... +|+...+..+++.- ...-+..-+..+|+.+......++
T Consensus 454 ~--~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 454 V--IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred h--cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 1 33555444 567888888999999999999988742 45677777777552 233347888888988887555788
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..|......-...|..+.+-.++-+..+
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 8888887777788888888887776654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.51 E-value=17 Score=37.20 Aligned_cols=147 Identities=18% Similarity=0.113 Sum_probs=87.8
Q ss_pred hCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHH
Q 006955 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (624)
.|+++.|-.++..++++ .-+.++..+-..|-.++|+++ .||+ .-|.. ..+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHh
Confidence 45555555555555422 233444445555555555543 2332 12222 2356778877776554
Q ss_pred hhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 006955 462 MKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 462 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
. .+..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+.-..+-..+.+....|
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N- 725 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN- 725 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccc-
Confidence 3 2456688888888888888888888887764 3456666666777666555555555544433
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
.-..+|...|++++..+++.+
T Consensus 726 ----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 ----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----hHHHHHHHcCCHHHHHHHHHh
Confidence 333456677888888887753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.36 E-value=23 Score=36.31 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=65.1
Q ss_pred HcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 218 VNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTT 297 (624)
Q Consensus 218 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 297 (624)
.-.|+++.|-.++..+.+ ...+.+...+.+.|..++|.++- +|+... .....+.|+++.|.++..+..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-----~D~d~r---Felal~lgrl~iA~~la~e~~- 664 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-----TDPDQR---FELALKLGRLDIAFDLAVEAN- 664 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-----CChhhh---hhhhhhcCcHHHHHHHHHhhc-
Confidence 345566655555544432 23444555556666666665542 222211 122345566666666554332
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA 365 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 365 (624)
+..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|
T Consensus 665 -s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 665 -SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred -chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 445567777777777777777776655432 3445555555555554444444443333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.29 E-value=1.2 Score=36.87 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHH
Q 006955 341 VLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 341 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
++..+.+.+.+.....+++.+...+...+..+.+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455566677777777777777766666677777777777777666666666663332 2223345555555555555
Q ss_pred HHHHHHH
Q 006955 421 LELFERM 427 (624)
Q Consensus 421 ~~~~~~m 427 (624)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 2e-11
Identities = 80/598 (13%), Positives = 165/598 (27%), Gaps = 182/598 (30%)
Query: 5 RIQEAQNLFDKMPQRDTVTWNVMIRGYFKN--GFLDNAMCLFNQMPERDMFTYNTVIAGL 62
+ LF + + + + FL + + + P Y
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE----- 114
Query: 63 MQSDNVQGAKEVFDGMEV-RDVVTWNSMISGYVCNGLIDEALR--------VFHGMP--- 110
Q D + +VF V R + +AL + G+
Sbjct: 115 -QRDRLYNDNQVFAKYNVSRLQPYLK-----------LRQALLELRPAKNVLIDGVLGSG 162
Query: 111 --------LKDV---------VSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVN 153
+ W L + NC + +++ + +WT +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW-LNLK---NCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 154 GLVREGRIVEA-----RKLFDKMPAK-------DVQAWNLMIAGYLDNGCVGVAEDLFQK 201
+ + R+L P + +V N + C
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSC---------- 266
Query: 202 MHDRDL--TSWKQLINGLVNSRRI-------------DAAISYF--------KQMPETCE 238
+ L T +KQ+ + L + D S + +P
Sbjct: 267 ---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 239 KTWN----SIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVI---VGYFEMGEVGS---A 288
T N SII+ IR+GL + + + + N T +I + E E
Sbjct: 324 TT-NPRRLSIIAESIRDGL-----ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 289 IKVFELMTTRDV--------TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTS 340
+ VF +W +I + + V+ + P +T +
Sbjct: 378 LSVFP----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTIS- 427
Query: 341 VLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH- 399
+P++ L +K+ + +++ Y NI +P +
Sbjct: 428 -------IPSIYL-------ELKVKLENEYALHRSIVDHY----NIPKTFDSDDLIPPYL 469
Query: 400 DIISWNSIICGLAYHGYAEKALELFERMR--LTDFKPDDITFVGV------LSACSYAGL 451
D + +H + E R DF+ F+ + + +
Sbjct: 470 D----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSI 520
Query: 452 VD---QGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS 506
++ Q ++Y K ++ Y +V+ + F L NL+ D + ++
Sbjct: 521 LNTLQQLKFY------KPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTDLLRIA 571
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 1e-08
Identities = 25/257 (9%), Positives = 70/257 (27%), Gaps = 18/257 (7%)
Query: 326 MKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385
+++ SP +L +LD+ + Q + + A
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 386 IQSA---LLEFSSVPIH----DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT 438
+ A L+ + +N+++ G A G ++ + + ++ PD ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEI 498
+ L ++ L+ ++ ++ R ++ +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 499 RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558
P ++ + + ++ + P L ++ E
Sbjct: 263 SLPPQLPPP-----------VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME 311
Query: 559 DAKRIFAQMKENGVKKE 575
A R+ E
Sbjct: 312 LASRVCVVSVEKPTLPS 328
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 1e-05
Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 23/235 (9%)
Query: 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGM-------EVRDVVTWNSMISGYVCNGLIDE 101
+ +D + A + ++ + +N+++ G+ G E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 102 ALRVFHGMPLK----DVVSWNLVIGALVNC-QRMDLAESYFKEMGARDVASWTIMVNGLV 156
+ V + D++S+ + + Q E ++M + + L+
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 157 ----REGRIVEARKLFDKM----PAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLT 208
R + K+ + ++ L +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
Query: 209 SWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEK 263
KQL + +S K + E +R+ K L +
Sbjct: 304 FEKQL---HMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRE 355
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 1e-04
Identities = 11/122 (9%), Positives = 37/122 (30%), Gaps = 12/122 (9%)
Query: 1 MRNARIQEAQNLFDKMPQR-------DTVTWNVMIRGYFKNGFLDNAMCLFNQMPER--- 50
+ ++ A +L + +N ++ G+ + G + + + +
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 51 -DMFTYNTVIAGLMQSDN-VQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHG 108
D+ +Y + + + D + + M + + + L+ H
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 109 MP 110
+
Sbjct: 258 VK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 31/183 (16%)
Query: 162 VEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSR 221
K + + + + +AG L+ + + L Q S
Sbjct: 54 SGEFKALTRRLQVEPRLLSKQMAGCLE----DCTRQAPESPWEEQLARLLQE-APGKLSL 108
Query: 222 RIDAAISYFKQM--PETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGY 279
++ A S ++ + + + AH L +
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH--------------- 153
Query: 280 FEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFT 339
+ + + ++N ++ G +E + +K++G +PD ++
Sbjct: 154 HGQRQKRKLL---------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 340 SVL 342
+ L
Sbjct: 205 AAL 207
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 47/244 (19%), Positives = 81/244 (33%), Gaps = 19/244 (7%)
Query: 6 IQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQS 65
I EAQ + P+RD + R Y + ++ L
Sbjct: 19 INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH 78
Query: 66 DNVQGAKEVFD-----GMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLV 120
D ++V + S Y + D ALR H + +
Sbjct: 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG--DSLECMAMT 136
Query: 121 IGALVNCQRMDLAESYFKEMGARD---VASWTIMVNGLVREG--RIVEARKLFDKMPAK- 174
+ L+ R+DLA K+M +D + + G ++ +A +F +M K
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196
Query: 175 --DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNS----RRIDAAIS 228
+ N A ++ G AE + Q+ D+D + LIN +V S + +
Sbjct: 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256
Query: 229 YFKQ 232
Y Q
Sbjct: 257 YLSQ 260
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 51/411 (12%), Positives = 98/411 (23%), Gaps = 53/411 (12%)
Query: 55 YNTVIAGLMQSDNVQGAKEVFD---GMEVRDVVTWNSMISGYVCNGLIDEALRVF---HG 108
+ G + VQ V G+ + VV S G + L V HG
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134
Query: 109 MPLKDVVSWNLVIGALVNCQRMDLAESYFK---EMGARDVASWTIMVNGLVREGRIVEAR 165
+ + VV+ G + + + V + G +
Sbjct: 135 LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 194
Query: 166 KLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVN 219
+ + + V A G V + + H + + + G
Sbjct: 195 PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQA 254
Query: 220 SRRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHSYLEK----YPYSNIASW 272
+ + Q S V+ L + P + +
Sbjct: 255 LETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP-QQVVAI 313
Query: 273 TNVIVGYFEMGEVGSAIKVFE---LMTTRDVTVWNVMIFGLGENDLG--EEGLKFFVQMK 327
+ G + V + V +T + V G+ L + L Q
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH--DGGKQALETVQRLLPVLCQAH 371
Query: 328 ESGPSPDNATFTSVLTICSDLPTL-DLGRQIHA-----QAIKIARNQFTTVSNAMITMYA 381
+P+ + I S+ L QA + Q +++
Sbjct: 372 GL--TPEQV-----VAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS-HDGGKQ 423
Query: 382 RCGNIQSALLEFSSV----PIHDIISWNSIICGLAYH--GYAEKALELFER 426
+Q L P +++ S G L +
Sbjct: 424 ALETVQRLLPVLCQAHGLTP-QQVVAIASN--GGGRPALESIVAQLSRPDP 471
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 41/241 (17%)
Query: 86 WNSMISGYVCNGLIDEALRVFHGM----PLKDVVSWNLVIGALVNCQRMDLAESYFK--- 138
+ ++ +G ++ + + + P + V+W V + ++ A YF
Sbjct: 342 YPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSS 400
Query: 139 EMGARDVASWTIMVNGLVREGRIVEARKLFDK----MPAKDVQAWNLMIAGYLDNGCVGV 194
M + +W + EG +A + + + ++ G + +
Sbjct: 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILL 459
Query: 195 AEDLFQK---MHDRDLTSWKQLINGLVNSRRIDAAISYFKQ----------MPETCEKTW 241
A + Q + D +L N + AI++F+ + TW
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 242 NSIISVLIRNGLVKEAHSYLEK-------YP--YSNIASWTNVIVGYFEMGEVGSAIKVF 292
++ + + A L + ++ IA Y G AI
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV------YLHKKIPGLAITHL 573
Query: 293 E 293
Sbjct: 574 H 574
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 31/220 (14%), Positives = 73/220 (33%), Gaps = 26/220 (11%)
Query: 96 NGLIDEALRVFHGM----PLKDVVSWNLVIGALVNCQRMDLAESYFK---EMGARDVASW 148
G + A R + P + L+ C+R+D + + + ++
Sbjct: 12 AGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 149 TIMVNGLVREGRIVEARKLFDKM----PAKDVQAWNLMIAGYLDNGCVGVAEDLFQK--- 201
+ + N G++ EA + + P + + + A + G + A +
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 202 MHDRDLTSWKQLINGLVNSRRIDAAISYFKQM----PETCEKTWNSIISVLIRNGLVKEA 257
+ L N L R++ A + + + P W+++ V G + A
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV-AWSNLGCVFNAQGEIWLA 188
Query: 258 -HSY---LEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFE 293
H + + P + + ++ N+ E A+ +
Sbjct: 189 IHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYL 227
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 624 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.24 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.81 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.75 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.75 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.68 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.65 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.53 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.5 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.45 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.44 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.43 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.43 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.43 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.21 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.2 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.13 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.04 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.0 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.97 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.96 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.94 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.87 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.86 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.75 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.71 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.66 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.51 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.33 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.3 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.3 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.99 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.64 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.34 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.28 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.23 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 96.22 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.2 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.19 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 96.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.8 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.64 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.34 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.17 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 94.09 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.48 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.65 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.98 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 91.87 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.87 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.88 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.58 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.45 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.68 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.55 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.24 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.38 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.99 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.63 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.13 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.76 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.72 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.99 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.07 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.05 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=344.59 Aligned_cols=473 Identities=10% Similarity=0.007 Sum_probs=269.3
Q ss_pred HHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCChHHHHHHHHh
Q 006955 62 LMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--KDVVSWNLVIGALVNCQRMDLAESYFKE 139 (624)
Q Consensus 62 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (624)
+...|.+..+...+..+..++...|+.++..+.+.|++++|+.+|+++.. |+..++..++.+|.+.|++++|..++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 44566677777777777778888999999999999999999999998874 8888888899999999999999999998
Q ss_pred cc--cCChhHHHHHHHHHHhCCChHHHHHHhccCCCC-------------------ChhHHHHHHHHHHHcCChhHHHHH
Q 006955 140 MG--ARDVASWTIMVNGLVREGRIVEARKLFDKMPAK-------------------DVQAWNLMIAGYLDNGCVGVAEDL 198 (624)
Q Consensus 140 ~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~ 198 (624)
+. .+++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 84 468889999999999999999999999965543 367888888888888888888888
Q ss_pred HHHcccCCcc---cHHHHHHHHHcCCCHHHHHHH---hhhCCCC----CcchHHHHHHHHHhcCChHHHHHHHhhcCC--
Q 006955 199 FQKMHDRDLT---SWKQLINGLVNSRRIDAAISY---FKQMPET----CEKTWNSIISVLIRNGLVKEAHSYLEKYPY-- 266 (624)
Q Consensus 199 ~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~---~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 266 (624)
|+++.+.++. .+..+...+...+..+.+... +..+... ...+|..++..|.+.|++++|..+|+++..
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 302 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC
Confidence 8888764433 333343333322222211110 1111111 111233334444455555555555555542
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
++..+++.++.+|.+.|++++|..+|+++.. .+..+|+.++.++...|++++|..+++++.+.. +.+..++..+..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 4444555555555555555555555554431 234445555555555555555555555554321 223444444444
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.+.+.|++++|..+|+.+.+.. +.+..+|+.++.+|.+.|++++|+++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD--------------------------------PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444444321 22344555555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccC--
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-- 501 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 501 (624)
|+++.+.+ +++..++..++.+|.+.|++++|.++|+++.+.. +.++.+|+.++..|.+.|++++|.++|+++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 55555531 2244555555555555555555555555555421 124555555555555556666655555555443
Q ss_pred --CCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 502 --GIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 502 --g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..|+ ..+|..++.+|...|++++|...++++.+..|.++.+|..++.+|...|++++|.+.++++.+.
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33444 4555555555555566666666666555555555555556666666666666666655555543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=346.84 Aligned_cols=459 Identities=9% Similarity=-0.027 Sum_probs=338.1
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc--CChhHHHHHHHHHHhCCChHHHHHHhcc
Q 006955 93 YVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDK 170 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 170 (624)
+...|....+...+..+..+++..|+.++..+.+.|++++|..+++++.. |+..++..++.+|.+.|++++|..+|+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34556666777777777667888899999999999999999999998864 7778888899999999999999999998
Q ss_pred CC--CCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHH
Q 006955 171 MP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVL 248 (624)
Q Consensus 171 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 248 (624)
+. .+++.+++.++.+|.+.|++++|.++|+++...+... ..+...++ +..-..++..+|..++.++
T Consensus 143 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 143 EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp TCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHHHHHH
T ss_pred HhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHHHHHH
Confidence 84 5688899999999999999999999998654333000 00000000 0000011233444555555
Q ss_pred HhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHH--H-HhhcCCC----CceehhhhhhHhhcCCCchH
Q 006955 249 IRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIK--V-FELMTTR----DVTVWNVMIFGLGENDLGEE 318 (624)
Q Consensus 249 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 318 (624)
.+.|++++|..+|+++. +.+...+..+...+...+..+.+.. + +..+... ...+|+.++..|.+.|++++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 55555555555555444 2222233333332222221111110 0 1222111 23457777888999999999
Q ss_pred HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-
Q 006955 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP- 397 (624)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 397 (624)
|.++|+++.+. +++..++..++.++.+.|++++|..+|+.+.+.+ +.+..+++.++.+|.+.|++++|..+++++.
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 291 AEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999988765 5888999999999999999999999999998876 4477888999999999999999999999876
Q ss_pred --CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcch
Q 006955 398 --IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAH 474 (624)
Q Consensus 398 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 474 (624)
+.+..+|+.++..|.+.|++++|.++|+++.+. .| +..+|..++..+.+.|++++|.++|+++.+. .+++..+
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 443 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLP 443 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHH
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHH
Confidence 557889999999999999999999999999884 44 4679999999999999999999999999874 2348899
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc------CCCC-CchHHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMEL------EPNN-SGVYLIL 547 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~-~~~~~~l 547 (624)
|..++.+|.+.|++++|.++|+++.+.. +.++.+|..++..|...|++++|...++++.+. .|.+ ..++..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999998753 457889999999999999999999999999987 4533 5689999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC
Q 006955 548 TEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.+|.+.|++++|.++++++.+.+
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=231.16 Aligned_cols=364 Identities=11% Similarity=0.110 Sum_probs=248.9
Q ss_pred HHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 006955 186 YLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHS 259 (624)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~ 259 (624)
+.+.|++++|++.++.+.+. +...+..+...+...|++++|...++...+ .+..++..+...+.+.|++++|..
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 33444444444444444321 112233333344444444444444443332 233345555555555555555555
Q ss_pred HHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCC
Q 006955 260 YLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSP 333 (624)
Q Consensus 260 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 333 (624)
.|+++. +.+...+..+..++.+.|++++|...|+++.. | +...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 555554 33344556666666666666666666665542 2 33445556666667777777777777766642 23
Q ss_pred CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHH
Q 006955 334 DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICG 410 (624)
Q Consensus 334 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 410 (624)
+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|+..|++.. +.+..++..+..+
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 35666667777777777777777777777654 2345556667777777888888887777654 3456788888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLID 489 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 489 (624)
|...|++++|+..++++.+. .|+ ..++..+...+.+.|++++|...++++.+. .+++..++..++..+.+.|+++
T Consensus 247 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999884 454 567888888999999999999999998874 2347888899999999999999
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
+|.+.++++.+.. +.+..++..+..++...|++++|...++++++..|.++..+..++.++...|+
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999988742 34577888999999999999999999999999999999999999988887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-26 Score=225.24 Aligned_cols=349 Identities=14% Similarity=0.100 Sum_probs=306.3
Q ss_pred HHHHHHcCCCHHHHHHHhhhCCC--CCc-chHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChH
Q 006955 213 LINGLVNSRRIDAAISYFKQMPE--TCE-KTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVG 286 (624)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 286 (624)
+...+.+.|++++|++.+..+.+ |+. ..+..+...+...|++++|...++.+. +.+..++..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45677889999999999988864 543 456667778899999999999998877 667778999999999999999
Q ss_pred HHHHHHhhcCC--C-CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006955 287 SAIKVFELMTT--R-DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAI 362 (624)
Q Consensus 287 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 362 (624)
+|...|+++.. | +..+|..+..++...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998853 3 5567999999999999999999999999876 454 4556677788899999999999999998
Q ss_pred HhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhh
Q 006955 363 KIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DIT 438 (624)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~ 438 (624)
+.. +.+...+..+...+.+.|++++|+..|+++. +.+...|..+...+...|++++|...+++..+ ..|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHH
Confidence 864 4456778889999999999999999999886 44567889999999999999999999999988 4565 578
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
+..+..++...|++++|...++++.+. .| ++.+|..++..|.+.|++++|.+.++++.+.. ++++.++..+...+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 888999999999999999999999873 46 67889999999999999999999999998752 55788999999999
Q ss_pred HhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 518 RIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...|++++|...++++++..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=235.73 Aligned_cols=186 Identities=13% Similarity=0.102 Sum_probs=134.8
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCC---------cHHHHHHHHHHHHhCCCCCcch
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT---------LDLGRQIHAQAIKIARNQFTTV 372 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 372 (624)
.++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-- 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-- 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH--
Confidence 4677788888888888888888888888888888888888888876654 45667777777777766654
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChH
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLV 452 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 452 (624)
.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 106 -----------------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 106 -----------------------------ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp -----------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 455556666666666667777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 006955 453 DQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI 519 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (624)
++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..+..
T Consensus 157 ~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 157 DKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777654 57777777777777777777777777777777777777777777777666543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=231.09 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=139.7
Q ss_pred chhhHHHHHHHhcCChHHHHHHHhhcC----CCCceehhhhhhHhhcCCC---------chHHHHHHHHhHHcCCCCCHH
Q 006955 270 ASWTNVIVGYFEMGEVGSAIKVFELMT----TRDVTVWNVMIFGLGENDL---------GEEGLKFFVQMKESGPSPDNA 336 (624)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~~ 336 (624)
.+++.+|++|++.|++++|.++|++|. .||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 468889999999999999999999996 4799999999999987665 578999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC----CCCchhHHHHHHHHH
Q 006955 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP----IHDIISWNSIICGLA 412 (624)
Q Consensus 337 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~ 412 (624)
||++++.+|++.|+++.|..+|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998877776666666666666665555555554 455555555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
+.|++++|.+++++|++.|..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=216.23 Aligned_cols=418 Identities=10% Similarity=-0.004 Sum_probs=307.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHhccCC--CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcC
Q 006955 146 ASWTIMVNGLVREGRIVEARKLFDKMP--AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNS 220 (624)
Q Consensus 146 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 220 (624)
..+......+.+.|++++|++.|+++. .|+..++..++.++.+.|++++|+..++++.+. +..++..+..++...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 456667778888999999999988887 467888888888999999999999999888753 334677888888888
Q ss_pred CCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhcC-----CCCcchhhH--HHHHHHhcCChHHHHH
Q 006955 221 RRIDAAISYFKQMPE---TCEKTWNSIISVLIRNGLVKEAHSYLEKYP-----YSNIASWTN--VIVGYFEMGEVGSAIK 290 (624)
Q Consensus 221 ~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~--l~~~~~~~g~~~~A~~ 290 (624)
|++++|+..|+.+.+ ++......++..+........+.+.+..+. +++...... .............+..
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 888888888887764 233344444444444333333333332111 000000000 0000001111111112
Q ss_pred HHhhcCC---------C-CceehhhhhhHhh---cCCCchHHHHHHHHhHH-----cCCC--------CCHHHHHHHHHH
Q 006955 291 VFELMTT---------R-DVTVWNVMIFGLG---ENDLGEEGLKFFVQMKE-----SGPS--------PDNATFTSVLTI 344 (624)
Q Consensus 291 ~~~~~~~---------~-~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~~ll~~ 344 (624)
.+..... + +...+......+. +.|++++|+..|+++.+ .... .+...+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2222111 1 1233333344344 38999999999999887 3112 234567777888
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHH
Q 006955 345 CSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
+...|+++.|...+..+.+.... ...+..+..+|...|++++|...++++. +.+..+|..+...+...|++++|.
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999999987655 7788889999999999999999998765 446778999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 422 ELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 422 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
..++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|.+.++++.+
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999852 334578888899999999999999999999874 34 678899999999999999999999999876
Q ss_pred CCCCcC-------HHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 501 DGIEVS-------PTVWGALLGACRI---HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 501 ~g~~p~-------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
. .|+ ...+..+..++.. .|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 401 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 L--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp H--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3 333 2388889999999 999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 006955 571 G 571 (624)
Q Consensus 571 ~ 571 (624)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=211.55 Aligned_cols=415 Identities=9% Similarity=-0.003 Sum_probs=214.1
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHH
Q 006955 114 VVSWNLVIGALVNCQRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYL 187 (624)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 187 (624)
...+..+...+.+.|++++|...|+++.+ .++..+..+..+|...|++++|++.++++. +.+..++..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34566677777777888888888877764 256677777777777777777777777765 235667777777777
Q ss_pred HcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCC------CcchHHHHHHHHHhcCChHHHHHHH
Q 006955 188 DNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPET------CEKTWNSIISVLIRNGLVKEAHSYL 261 (624)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~ 261 (624)
..|++++|+..|+ ....++......+..+...+...+|+..++.+... ........+..+....+.+.+...+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 7777777777775 33333333333344455555556667666666541 1112233344444555555555555
Q ss_pred hhcCCCCcc---hhhHHHHHHHhc--------CChHHHHHHHhhcCCCCce----------ehhhhhhHhhcCCCchHHH
Q 006955 262 EKYPYSNIA---SWTNVIVGYFEM--------GEVGSAIKVFELMTTRDVT----------VWNVMIFGLGENDLGEEGL 320 (624)
Q Consensus 262 ~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~ 320 (624)
......+.. ....+...+... |++++|..+|+.+...++. ++..+...+...|++++|.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 444433332 222333222221 3455555555555432211 2334444555556666666
Q ss_pred HHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCC
Q 006955 321 KFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHD 400 (624)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (624)
..|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------~~~ 309 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--------------------------------PEY 309 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--------------------------------TTC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--------------------------------CCC
Confidence 666655553 3444455555555555555555555555555443 223
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCV 478 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 478 (624)
+.+|..+...+...|++++|...++++.+. .| +...+..+...+...|++++|...++++.+. .| +...+..+
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l 384 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFF 384 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHH
Confidence 334444555555555555555555555442 22 2234444445555555555555555555442 13 34445555
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcC-------HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVS-------PTVWGALLGACRIH----------NNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 541 (624)
...|...|++++|.+.++++.+. .|+ ...+..+..++... |++++|...++++++..|.++
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRL--EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc--CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 55555555555555555554331 110 01122223334444 555555555555555555555
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++..++.+|...|++++|.+.+++..+.
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55555555555555555555555555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-23 Score=212.11 Aligned_cols=428 Identities=11% Similarity=-0.038 Sum_probs=321.3
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHhccc--CChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHc
Q 006955 115 VSWNLVIGALVNCQRMDLAESYFKEMGA--RDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDN 189 (624)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 189 (624)
..+......+.+.|++++|...|+++.+ |++..+..+..++...|++++|.+.++++. +.+..++..++.++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999986 788899999999999999999999999876 34678999999999999
Q ss_pred CChhHHHHHHHHcccCCc---ccHHHHHHHHHcCCCHHHHHHHhhhCCC----CCcchHHHHH---HHHHhcCChHHHHH
Q 006955 190 GCVGVAEDLFQKMHDRDL---TSWKQLINGLVNSRRIDAAISYFKQMPE----TCEKTWNSII---SVLIRNGLVKEAHS 259 (624)
Q Consensus 190 g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll---~~~~~~~~~~~a~~ 259 (624)
|++++|...|+++.+.++ .....++..+........+.+.+..+.. |+...+..-. ..............
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 999999999999976443 3344445544444333333333322211 1111000000 00011111111111
Q ss_pred HHhhcC----------CCCcchhhHHHHHHHh---cCChHHHHHHHhhcCC----------------C-CceehhhhhhH
Q 006955 260 YLEKYP----------YSNIASWTNVIVGYFE---MGEVGSAIKVFELMTT----------------R-DVTVWNVMIFG 309 (624)
Q Consensus 260 ~~~~~~----------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~ 309 (624)
.+.... +.+...+......+.. .|++++|...|+++.. + +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 222111 1223344444444544 8899999999887654 1 34567788889
Q ss_pred hhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH
Q 006955 310 LGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (624)
+...|++++|...|+++.+.. |+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998864 447788888899999999999999999988764 44567788899999999999999
Q ss_pred HHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc
Q 006955 390 LLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY 466 (624)
Q Consensus 390 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 466 (624)
...++++. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 99998865 4567789999999999999999999999998842 3345788888999999999999999999988742
Q ss_pred CCCCC----cchHHHHHHHhhc---cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 467 FLQPR----SAHYTCVVDLLGR---FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 467 ~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
.-.|+ ...+..+...|.. .|++++|.+.++++.+.. +.++.++..+..++...|++++|...+++++++.|.
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 11122 2388899999999 999999999999988742 346778899999999999999999999999999998
Q ss_pred CCchHHHH
Q 006955 540 NSGVYLIL 547 (624)
Q Consensus 540 ~~~~~~~l 547 (624)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 87777666
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-22 Score=207.17 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=311.9
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCChHHHHHHHHhccc--C-ChhHHHHHHHHH
Q 006955 82 DVVTWNSMISGYVCNGLIDEALRVFHGMPL--K-DVVSWNLVIGALVNCQRMDLAESYFKEMGA--R-DVASWTIMVNGL 155 (624)
Q Consensus 82 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 155 (624)
....+..+...+.+.|++++|+..|+++.+ | ++.++..+..++...|++++|...++++.+ | ++..+..+..++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 456788999999999999999999999875 4 667889999999999999999999999875 3 667888999999
Q ss_pred HhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC------CcccHHHHHHHHHcCCCHHHHHHH
Q 006955 156 VREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------DLTSWKQLINGLVNSRRIDAAISY 229 (624)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~ 229 (624)
...|++++|.+.|+.+ ..++......+..+...+....|...++++... ........+..+....+.+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999999643 333333344455666677788999999999763 223456777788888999999988
Q ss_pred hhhCCCCCcc---hHHHHHHHHH--------hcCChHHHHHHHhhcCC---CCcc-------hhhHHHHHHHhcCChHHH
Q 006955 230 FKQMPETCEK---TWNSIISVLI--------RNGLVKEAHSYLEKYPY---SNIA-------SWTNVIVGYFEMGEVGSA 288 (624)
Q Consensus 230 ~~~~~~~~~~---~~~~ll~~~~--------~~~~~~~a~~~~~~~~~---~~~~-------~~~~l~~~~~~~g~~~~A 288 (624)
+......+.. ....+...+. ..|++++|..+++.+.. .+.. ++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 8888765544 2333332222 22578899999988873 2222 466677888999999999
Q ss_pred HHHHhhcCC--CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 006955 289 IKVFELMTT--RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR 366 (624)
Q Consensus 289 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 366 (624)
...|+.+.. |+...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 999998863 456778888899999999999999999988763 3345667666667777777777777776666543
Q ss_pred CCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 367 NQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
+.+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 341 -------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 341 -------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEIL 388 (537)
T ss_dssp -------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 1234456667777778888888888888877742 23345777777778
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhcc----------CChHHHHHHHHHcccCCCCcCHHHHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRF----------GLIDEAMNLLNEIRADGIEVSPTVWGA 512 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (624)
...|++++|...++++.+...-.++ ...+..+...|.+. |++++|...++++.+.. +.++..+..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 8888888888888887664211111 11233445666666 99999999999887742 335778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+..++...|++++|...+++++++.|.++....
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 889999999999999999999999987665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-22 Score=202.68 Aligned_cols=355 Identities=10% Similarity=0.042 Sum_probs=244.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcC
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGEN 313 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 313 (624)
.+..+...+.+.|++++|..+|+++. +.+..++..+..+|...|++++|...|+.+.+ .+..++..+...|...
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 107 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 34444445555555555555555444 33444555555555555555555555555432 2344555566666666
Q ss_pred CCchHHHHHHHHhHHcCCCCCH----HHHHHH------------HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHH
Q 006955 314 DLGEEGLKFFVQMKESGPSPDN----ATFTSV------------LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377 (624)
Q Consensus 314 ~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (624)
|++++|...|+++.+. .|+. ..+..+ ...+...|+++.|...++.+.+.. +.+..++..++
T Consensus 108 g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 6666666666666543 3332 222222 334666777888888887777653 34566677788
Q ss_pred HHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHH-----------
Q 006955 378 TMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI-TFVGV----------- 442 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l----------- 442 (624)
.+|.+.|++++|+..|+++. +.++.+|..+...|...|++++|+..++++.+ ..|+.. .+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888775 45778899999999999999999999999987 456554 33333
Q ss_pred -HHHhcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 443 -LSACSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 443 -l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
...+...|++++|..+++++.+. .|+ ...+..++.++.+.|++++|++.++++.+.. +.++..|..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 67889999999999999999874 454 3478889999999999999999999988742 3468899999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHH------------HHHhcC-----ChHHHHHHHHHH-HHCCCccCCce
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTE------------MYLSCG-----RREDAKRIFAQM-KENGVKKEPGC 578 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~m-~~~~~~~~~~~ 578 (624)
|...|++++|...+++++++.|.++..+..++. .|...| +.+++.+.++++ .+......++
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~- 417 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN- 417 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS-
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC-
Confidence 999999999999999999999999999999984 455556 566777777763 3332111111
Q ss_pred eEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhhh
Q 006955 579 SWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREIL 619 (624)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (624)
+...+...+....+.+....++..+.
T Consensus 418 ---------------~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 418 ---------------EEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred ---------------chHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 00012355666677777777665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=196.45 Aligned_cols=358 Identities=13% Similarity=0.024 Sum_probs=237.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHccc---CCcccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHH
Q 006955 175 DVQAWNLMIAGYLDNGCVGVAEDLFQKMHD---RDLTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVL 248 (624)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~ 248 (624)
++..+..++..+.+.|++++|+.+|+++.+ .+..++..+..++...|++++|+..|+.+.+ | +..++..+..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 567788888889999999999999988875 3445677778888888888888888887764 3 344666677777
Q ss_pred HhcCChHHHHHHHhhcCCC---Cc---chhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHH
Q 006955 249 IRNGLVKEAHSYLEKYPYS---NI---ASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
...|++++|...++++... +. ..+..++..+...+ +..+...+...|++++|+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777776622 22 34444433311110 11122234455556666666
Q ss_pred HHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CC
Q 006955 323 FVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IH 399 (624)
Q Consensus 323 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 399 (624)
|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..++.+|...|++++|+..|+++. +.
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 65555432 2344455555555566666666666666555542 2334555556666666666666666666554 22
Q ss_pred CchhHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHh
Q 006955 400 DIISWNSI------------ICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCM 462 (624)
Q Consensus 400 ~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~ 462 (624)
+...+..+ ...+...|++++|...|+++.+ ..|+. ..+..+..++.+.|++++|...++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333333 7888899999999999999988 45653 36777888899999999999999998
Q ss_pred hhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHH------------HHhcC-----Ch
Q 006955 463 KNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGA------------CRIHN-----NI 523 (624)
Q Consensus 463 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~------------~~~~g-----~~ 523 (624)
.+. .| +...|..+..+|...|++++|.+.++++.+ +.|+ +..+..+..+ |...| +.
T Consensus 322 ~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 322 LQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 874 35 688899999999999999999999999987 4564 5666666633 33334 66
Q ss_pred HHHHHHHHH-HHccCCCCCc----------hHHHHHHHHHhcCChHHH
Q 006955 524 KVGEIAGER-VMELEPNNSG----------VYLILTEMYLSCGRREDA 560 (624)
Q Consensus 524 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 560 (624)
+++.+.+++ +++..|++.. .+..+..+|...|+.+++
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777888886 6777775322 455666666666665543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-17 Score=174.37 Aligned_cols=412 Identities=14% Similarity=0.156 Sum_probs=316.4
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHhccc-C-----ChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHH
Q 006955 113 DVVSWNLVIGALVNCQRMDLAESYFKEMGA-R-----DVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGY 186 (624)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 186 (624)
++.--....++|...|++.+|.++++++.. + +....+.++.+..+. +..+..+..+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 444556678888899999999999999873 2 235556677666665 5566666666555333 34477888
Q ss_pred HHcCChhHHHHHHHHcccCCcccHHHHHHHHH-cCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC
Q 006955 187 LDNGCVGVAEDLFQKMHDRDLTSWKQLINGLV-NSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP 265 (624)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (624)
...|.+++|..+|++... +...+..+. ..+++++|.++.++.. ++.+|..+..++...|++++|...|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 899999999999999742 222223333 7889999999999773 4668889999999999999999999775
Q ss_pred CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC--CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 266 YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT--RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
.+...|..++.++.+.|++++|.+.+....+ +++...+.++.+|++.+++++...+. . .|+...|..+..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 6777888899999999999999999987654 34445556899999999888544332 2 556677888999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.|...|+++.|..+|..+ ..|..++.+|.+.|+++.|.+.+++.. ++.+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999985 367889999999999999999999885 567899999999999999888876
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc--CChHHHHHHHHHccc
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF--GLIDEAMNLLNEIRA 500 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 500 (624)
... +..+...+..++..|.+.|.+++|+.+++.... +.| ....|+-|..+|.+. ++..++.+.|..-..
T Consensus 1273 gl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1273 GLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 654 444556677889999999999999999987764 445 566777777777654 577777777775443
Q ss_pred CCCCc------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc------------cCCCCCchHHHHHHHHHhcC-------
Q 006955 501 DGIEV------SPTVWGALLGACRIHNNIKVGEIAGERVME------------LEPNNSGVYLILTEMYLSCG------- 555 (624)
Q Consensus 501 ~g~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g------- 555 (624)
++| +...|..++-.|.+.|+++.|....-.-.. ..+.|+..|...+..|...+
T Consensus 1345 --i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndL 1422 (1630)
T 1xi4_A 1345 --IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDL 1422 (1630)
T ss_pred --cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHH
Confidence 333 466899999999999999999843222211 24668888998888888877
Q ss_pred --------ChHHHHHHHH
Q 006955 556 --------RREDAKRIFA 565 (624)
Q Consensus 556 --------~~~~A~~~~~ 565 (624)
+++.+.+++.
T Consensus 1423 l~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1423 LMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHhhhcCChHHHHHHHH
Confidence 7777777776
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-16 Score=171.98 Aligned_cols=374 Identities=12% Similarity=0.168 Sum_probs=251.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCC-CCC-----cchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHH
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMP-ERD-----MFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISG 92 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 92 (624)
.||.--...+++|...|.+.+|+.+|+++. +++ ....+.++....+. +.....+..+....-+ ...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 466666778888999999999999999987 332 24455555555555 4455555444443222 4557778
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHH-cCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccC
Q 006955 93 YVCNGLIDEALRVFHGMPLKDVVSWNLVIGALV-NCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKM 171 (624)
Q Consensus 93 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 171 (624)
+...|.+++|..+|++... +...+..+. ..+++++|.++.++. .++.+|..+..++...|++++|++.|.+
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiK- 1130 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIK- 1130 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHh-
Confidence 8888888999888888742 222222233 667888888888866 3567788888888888888888888855
Q ss_pred CCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC--CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHH
Q 006955 172 PAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR--DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLI 249 (624)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 249 (624)
..|...|..++..+.+.|++++|.+.|....+. +....+.++.+|.+.+++++..... ..++...+..+...|.
T Consensus 1131 -AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1131 -ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCY 1206 (1630)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 367778888888888888888888888776653 3334556888888888888544443 3456667777888888
Q ss_pred hcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHc
Q 006955 250 RNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKES 329 (624)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 329 (624)
..|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++.. +..+|..+..+|...|++..|......
T Consensus 1207 ~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~--n~~aWkev~~acve~~Ef~LA~~cgl~---- 1275 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH---- 1275 (1630)
T ss_pred hcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC--CHHHHHHHHHHHhhhhHHHHHHHHHHh----
Confidence 888888888888764 478888888888888888888888763 456677666677777776666655432
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHh--hCCHHHHHHHhccCC-C-------C
Q 006955 330 GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR--CGNIQSALLEFSSVP-I-------H 399 (624)
Q Consensus 330 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~-~-------~ 399 (624)
+..+...+..++..|.+.|.+++|..+++...... +-....++-+..+|++ -+++.++.+.|..-. . .
T Consensus 1276 -Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e 1353 (1630)
T 1xi4_A 1276 -IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 1353 (1630)
T ss_pred -hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH
Confidence 23344455566666677777777777776555433 3334445445455444 234445555554332 1 1
Q ss_pred CchhHHHHHHHHHHcCChHHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKAL 421 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~ 421 (624)
+...|.-+...|.+.|+++.|.
T Consensus 1354 ~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1354 QAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhcccHHHHH
Confidence 3445666666666666666666
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=170.10 Aligned_cols=302 Identities=12% Similarity=0.032 Sum_probs=220.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhh
Q 006955 238 EKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLG 311 (624)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 311 (624)
+..+..+...+...|++++|...++++. +.+..++..+...+...|++++|...|+++.. .+...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 3456667777888888888888887776 55566777777788888888888888877643 24566777777777
Q ss_pred cCCCchHHHHHHHHhHHcCCCC---CH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 312 ENDLGEEGLKFFVQMKESGPSP---DN-ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 312 ~~~~~~~a~~~~~~m~~~~~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
..|++++|...|++..+. .| +. ..+..+.... . ......+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 888888888888777654 44 22 2222221100 0 001122456677778888
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+|+..++++. +.++..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888877765 4466778888888888889999998888888742 33456777888888888899999988888887
Q ss_pred hcCCCC-CcchHH------------HHHHHhhccCChHHHHHHHHHcccCCCCcC-HH----HHHHHHHHHHhcCChHHH
Q 006955 465 KYFLQP-RSAHYT------------CVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PT----VWGALLGACRIHNNIKVG 526 (624)
Q Consensus 465 ~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~----~~~~l~~~~~~~g~~~~a 526 (624)
. .| +...+. .+...+.+.|++++|.+.++++.+. .|+ +. .+..+..++...|++++|
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 4 34 333332 2366788899999999999998763 343 32 344567788899999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...++++.+..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=173.79 Aligned_cols=279 Identities=12% Similarity=0.149 Sum_probs=132.9
Q ss_pred CCCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCC--
Q 006955 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME-- 79 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 79 (624)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 467899999999999554 58999999999999999999999765 566789999999999999999999887666
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCC
Q 006955 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREG 159 (624)
Q Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 159 (624)
.+++.+.+.|+.+|.+.|++.++.++++. |+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 162 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTT
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhc
Confidence 45678899999999999999998887753 78889999999999999999999999987 48999999999999
Q ss_pred ChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcc
Q 006955 160 RIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEK 239 (624)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 239 (624)
++++|++.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.+++....-+..
T Consensus 163 ~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 163 EYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp CHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred cHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 999999999988 488999999999999999999977776654 44444567888999999999999999988764322
Q ss_pred ---hHHHHHHHHHh--cCChHHHHHHHhhcC---C-----CCcchhhHHHHHHHhcCChHHHHHHHhhc
Q 006955 240 ---TWNSIISVLIR--NGLVKEAHSYLEKYP---Y-----SNIASWTNVIVGYFEMGEVGSAIKVFELM 295 (624)
Q Consensus 240 ---~~~~ll~~~~~--~~~~~~a~~~~~~~~---~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 295 (624)
.|+-+.-++++ .+++.+..+.|..-. + .+...|..++..|..-++++.|....-.-
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 45555545543 455566666655444 2 46777888888888888888887755443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=170.55 Aligned_cols=318 Identities=11% Similarity=0.041 Sum_probs=236.1
Q ss_pred cccHHHHHHHHHcCCCHHHHHHHhhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHH
Q 006955 207 LTSWKQLINGLVNSRRIDAAISYFKQMPE--T-CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYF 280 (624)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 280 (624)
+..+..+...+...|++++|+..|+.+.+ | +..++..+...+...|++++|...++++. +.+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34577888899999999999999999875 3 45688889999999999999999999987 556778999999999
Q ss_pred hcCChHHHHHHHhhcCCCCc------eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHH
Q 006955 281 EMGEVGSAIKVFELMTTRDV------TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLG 354 (624)
Q Consensus 281 ~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 354 (624)
..|++++|...|+.+...++ ..+..+... . ....+..+...+...|+++.|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA-----------------D------EMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHccCHHHH
Confidence 99999999999998865433 223222100 0 001122233344445555555
Q ss_pred HHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 355 RQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
...+..+.+.. +.+..++..+...+...|++++|...++++. +.++.+|..+...+...|++++|...+++..+.
T Consensus 140 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 217 (359)
T 3ieg_A 140 ITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 217 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 55555554442 2334455556666777777777777776554 345667888888888889999999999888873
Q ss_pred CCCChh-hHH------------HHHHHhcccChHHHHHHHHHHhhhhcCCCCC-c----chHHHHHHHhhccCChHHHHH
Q 006955 432 FKPDDI-TFV------------GVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-S----AHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 432 ~~p~~~-~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~ 493 (624)
.|+.. .+. .+...+...|++++|...++++.+. .|+ . ..+..+...|...|++++|++
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 218 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 44432 222 2255688899999999999999874 353 2 235567889999999999999
Q ss_pred HHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 494 LLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 494 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
.++++.+.. +.++.++..+..++...|++++|...+++++++.|.++.....+..++...
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999988742 336889999999999999999999999999999999988888887776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-18 Score=164.26 Aligned_cols=288 Identities=10% Similarity=0.010 Sum_probs=203.5
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
.+..++..++..+...|++++|..+|+.+.. .+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444455555555555556666655555532 133344445555666666666666666665542 223445555556
Q ss_pred HHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHH
Q 006955 344 ICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEK 419 (624)
Q Consensus 344 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 419 (624)
.+...| +++.|...+..+.+.. +.+...+..+...+...|++++|+..++++. +.+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 6666666666666543 2345556667777778888888888777665 3345677778888899999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcC-------CCCCcchHHHHHHHhhccCChHHHH
Q 006955 420 ALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYF-------LQPRSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988742 33456778888888899999999999988876421 0224678889999999999999999
Q ss_pred HHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH-HhcCChH
Q 006955 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY-LSCGRRE 558 (624)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 558 (624)
+.++++.+.. +.++..+..+..++...|++++|...+++++++.|.++..+..++.++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999988742 335778888999999999999999999999999999999999999988 4556554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=159.69 Aligned_cols=276 Identities=14% Similarity=0.165 Sum_probs=135.9
Q ss_pred HhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCC
Q 006955 32 FKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPL 111 (624)
Q Consensus 32 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 111 (624)
-+.|++++|.++++++..| .+|+.++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|++.++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3678899999999999655 48999999999999999999999764 6888999999999999999999998877765
Q ss_pred --CCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHc
Q 006955 112 --KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDN 189 (624)
Q Consensus 112 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (624)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.
T Consensus 90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~L 161 (449)
T 1b89_A 90 KARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHL 161 (449)
T ss_dssp -------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTT
T ss_pred hCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHh
Confidence 567888999999999999999888875 477789999999999999999999999977 5899999999999
Q ss_pred CChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCC--
Q 006955 190 GCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYS-- 267 (624)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 267 (624)
|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|.++++..+++.....
T Consensus 162 g~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 162 GEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp TCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred ccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 9999999999999 478899999999999999999988887765 44444567888999999999999999998833
Q ss_pred -CcchhhHHHHHHHh--cCChHHHHHHHhhcCC--------CCceehhhhhhHhhcCCCchHHHHH
Q 006955 268 -NIASWTNVIVGYFE--MGEVGSAIKVFELMTT--------RDVTVWNVMIFGLGENDLGEEGLKF 322 (624)
Q Consensus 268 -~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (624)
....|+-+.-+|++ -+++.+.++.|..-.. .+...|..+...|...++++.|...
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 34456777666765 3456666666653332 2577899999999999999998874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-18 Score=169.25 Aligned_cols=293 Identities=10% Similarity=-0.008 Sum_probs=191.3
Q ss_pred hcCChHHHHH-HHhhcC---CC----CcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchH
Q 006955 250 RNGLVKEAHS-YLEKYP---YS----NIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEE 318 (624)
Q Consensus 250 ~~~~~~~a~~-~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 318 (624)
..|++++|.. .+.+.. +. +...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455666665 555444 11 133455555666666666666666655532 234455555555666666666
Q ss_pred HHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC
Q 006955 319 GLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI 398 (624)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (624)
|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+...... ..+..+.. ... ...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~-------~~~-------~~~ 180 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPAEE-------GAG-------GAG 180 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH-------Hhh-------hhc
Confidence 666666555542 22444555555555555555555555555555332111 11100000 000 000
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-Ccch
Q 006955 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD---DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAH 474 (624)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 474 (624)
+ ...+.. +..+...|++++|...++++.+. .|+ ..++..+...+...|++++|...++++.+. .| +...
T Consensus 181 ~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~ 253 (368)
T 1fch_A 181 L-GPSKRI-LGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLL 253 (368)
T ss_dssp ------CT-THHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred c-cHHHHH-HHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHH
Confidence 0 001112 23333889999999999999884 444 678888899999999999999999999874 35 6788
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------Cch
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN-----------SGV 543 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~ 543 (624)
+..++..|...|++++|++.++++.+.. +.++..+..+..++...|++++|...+++++++.|.+ +.+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 9999999999999999999999988742 3457899999999999999999999999999988877 788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 006955 544 YLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
+..++.+|...|++++|..++.+
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999999999998764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=163.23 Aligned_cols=365 Identities=9% Similarity=-0.009 Sum_probs=244.5
Q ss_pred CChhHHHHHHHHHHh----CCChHHHHHHhccCCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHcccC-CcccHHH
Q 006955 143 RDVASWTIMVNGLVR----EGRIVEARKLFDKMPA-KDVQAWNLMIAGYLD----NGCVGVAEDLFQKMHDR-DLTSWKQ 212 (624)
Q Consensus 143 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ 212 (624)
.++..+..+...|.. .+++++|...|+...+ .++..+..|...|.. .+++++|.+.|++..+. +...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 466666666666666 6777777777766543 356666667777766 66777777777766553 3334555
Q ss_pred HHHHHHc----CCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh----cCC
Q 006955 213 LINGLVN----SRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE----MGE 284 (624)
Q Consensus 213 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 284 (624)
|...|.. .+++++|++.|+...++ .++..+..+...|.. .++
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ------------------------------GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHcCCCCCCC
Confidence 5555555 55666666666554432 222333344444443 445
Q ss_pred hHHHHHHHhhcCC-CCceehhhhhhHhhc----CCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC----CCCcHHHH
Q 006955 285 VGSAIKVFELMTT-RDVTVWNVMIFGLGE----NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD----LPTLDLGR 355 (624)
Q Consensus 285 ~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 355 (624)
.++|...|++..+ .+...+..+...|.. .+++++|...|++..+.| +...+..+...+.. .++.++|.
T Consensus 167 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 167 YVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 5555555554432 244455555555554 566777777777666543 33344444444443 56777777
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhHh----hCCHHHHHHHhccCC-CCCchhHHHHHHHHHHc-----CChHHHHHHHH
Q 006955 356 QIHAQAIKIARNQFTTVSNAMITMYAR----CGNIQSALLEFSSVP-IHDIISWNSIICGLAYH-----GYAEKALELFE 425 (624)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~ 425 (624)
..++...+.| +...+..+..+|.. .++.++|+..|++.. ..++..+..+...|... +++++|...++
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 7777666543 23344456666666 788888888888765 34566777788888877 89999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhcccC---hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHc
Q 006955 426 RMRLTDFKPDDITFVGVLSACSYAG---LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEI 498 (624)
Q Consensus 426 ~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 498 (624)
+..+.| +...+..+...+...| +.++|.+++++..+. .++..+..|...|.. .+++++|.+++++.
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 998865 3456666666666656 889999999998874 367788888888888 89999999999998
Q ss_pred ccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC---CCchHHHHHHHHHh
Q 006955 499 RADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPN---NSGVYLILTEMYLS 553 (624)
Q Consensus 499 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 553 (624)
.+.| ++..+..|...|.. .++.++|...++++.+..|+ ++.....|+.++..
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8754 56778888888877 89999999999999998854 66667777666554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=160.56 Aligned_cols=267 Identities=11% Similarity=-0.010 Sum_probs=227.9
Q ss_pred CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHH
Q 006955 298 RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMI 377 (624)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (624)
.++..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366677788888999999999999999998763 3334455567778888999999999999998864 44667788899
Q ss_pred HHhHhhC-CHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH
Q 006955 378 TMYARCG-NIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD 453 (624)
Q Consensus 378 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 453 (624)
..+...| ++++|...|++.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999998865 4467789999999999999999999999999852 334567777888999999999
Q ss_pred HHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC--------CCcCHHHHHHHHHHHHhcCChH
Q 006955 454 QGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG--------IEVSPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~ 524 (624)
+|...++++.+. .| +...+..+...|...|++++|.+.++++.+.. .+..+.++..+..++...|+++
T Consensus 177 ~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999874 35 67889999999999999999999999876521 1234578899999999999999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 525 VGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+|...++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999876543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-16 Score=161.08 Aligned_cols=401 Identities=12% Similarity=0.119 Sum_probs=258.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC--CcccHHHHHHHH-
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR--DLTSWKQLINGL- 217 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~- 217 (624)
|...|..++. +...|++++|..+|+.+.+ .+...|..++..+.+.|++++|..+|+++... ++..|..++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5667777776 3667788888888877763 25567777777777888888888888887763 333344444322
Q ss_pred HcCCCHHHHHH----HhhhCCC------CCcchHHHHHHHHHh---------cCChHHHHHHHhhcCC-CCc---chhhH
Q 006955 218 VNSRRIDAAIS----YFKQMPE------TCEKTWNSIISVLIR---------NGLVKEAHSYLEKYPY-SNI---ASWTN 274 (624)
Q Consensus 218 ~~~~~~~~A~~----~~~~~~~------~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~~~~ 274 (624)
...|+.++|.+ +|+.... ++...|...+....+ .|+++.|..+|+++.. |.. ..|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 23455554443 4443321 122344444444333 4555555555555552 111 01111
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhH------HcC---CCCCH--------HH
Q 006955 275 VIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMK------ESG---PSPDN--------AT 337 (624)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~~ 337 (624)
........|. ..+..++. ...+++..|..++.++. +.. ++|+. ..
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 1110000000 00000000 12345566666665521 111 24431 23
Q ss_pred HHHHHHHHcC----CCCc----HHHHHHHHHHHHhCCCCCcchhHHHHHHhHh-------hCCHH-------HHHHHhcc
Q 006955 338 FTSVLTICSD----LPTL----DLGRQIHAQAIKIARNQFTTVSNAMITMYAR-------CGNIQ-------SALLEFSS 395 (624)
Q Consensus 338 ~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~ 395 (624)
|...+..... .++. +.+..+++.+.... +.++.++..++..+.+ .|+++ +|..+|++
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 3333322211 2333 36667888877763 4566777777777765 68877 89999987
Q ss_pred CC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCC
Q 006955 396 VP----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD--ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ 469 (624)
Q Consensus 396 ~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 469 (624)
.. +.+...|..++..+...|++++|..+|+++.+ +.|+. ..|..++..+.+.|+.++|+.+|++..+. .
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~ 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---A 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---T
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---c
Confidence 65 23577899999999999999999999999998 46654 47888888888899999999999999874 3
Q ss_pred C-CcchHHHHHHH-hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc----
Q 006955 470 P-RSAHYTCVVDL-LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG---- 542 (624)
Q Consensus 470 p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 542 (624)
| +...|...+.. +...|+.++|.++|++..+. .| ++..|..++..+...|+.++|..+|++++...|.++.
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 4 33334333322 33689999999999998873 45 5889999999999999999999999999998876665
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67778888889999999999999987753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-16 Score=150.31 Aligned_cols=243 Identities=10% Similarity=-0.035 Sum_probs=174.7
Q ss_pred hhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC-CCCcchhHHHHHHhHhhC
Q 006955 306 MIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIAR-NQFTTVSNAMITMYARCG 384 (624)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 384 (624)
+..+|...|+++.|+..++.. -+|+..++..+...+...++.+.|...++.+...+. |.+...+..+..++...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 344455555555555433321 234444555555555555555555555555555443 223344455678888999
Q ss_pred CHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH---HHHHHhcccChHHHHHHHHHH
Q 006955 385 NIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV---GVLSACSYAGLVDQGRYYFDC 461 (624)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~ 461 (624)
++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+. .|+..... ..+..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 567788999999999999999999999999985 56653221 233444566999999999999
Q ss_pred hhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHH-HHHHHHHHHccCCC
Q 006955 462 MKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKV-GEIAGERVMELEPN 539 (624)
Q Consensus 462 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~ 539 (624)
+.+. .+.++..++.+..++.+.|++++|.+.++++.+. .| ++.++..++..+...|+..+ +.+++++++++.|.
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9985 3347888999999999999999999999998874 45 68899999999999999876 67899999999998
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 540 NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
++.+.. ...+.+.++++..-|
T Consensus 268 ~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 268 HPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHH----HHHHHHHHHHHHHHH
T ss_pred ChHHHH----HHHHHHHHHHHHHHc
Confidence 876543 344555555555433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-15 Score=155.82 Aligned_cols=351 Identities=14% Similarity=0.030 Sum_probs=263.9
Q ss_pred CChhHHHHHHHHHHH----cCChhHHHHHHHHcccC-CcccHHHHHHHHHc----CCCHHHHHHHhhhCCCCCcchHHHH
Q 006955 174 KDVQAWNLMIAGYLD----NGCVGVAEDLFQKMHDR-DLTSWKQLINGLVN----SRRIDAAISYFKQMPETCEKTWNSI 244 (624)
Q Consensus 174 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~l 244 (624)
.++.++..+...|.. .+++++|+..|++..+. +...+..|...|.. .+++++|+++|++..+
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--------- 107 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL--------- 107 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------
Confidence 355666666666665 56666666666665443 23344444444444 4445555544444332
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHh----cCChHHHHHHHhhcCCC-CceehhhhhhHhhc----CCC
Q 006955 245 ISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFE----MGEVGSAIKVFELMTTR-DVTVWNVMIFGLGE----NDL 315 (624)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~ 315 (624)
..++..+..|...|.. .+++++|...|++.... ++..+..+...|.. .++
T Consensus 108 ---------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 108 ---------------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred ---------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 2334445556666666 67788888888776543 56667777777776 789
Q ss_pred chHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHh----hCCHH
Q 006955 316 GEEGLKFFVQMKESGPSPDNATFTSVLTICSD----LPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR----CGNIQ 387 (624)
Q Consensus 316 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 387 (624)
+++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| ++.....+...|.. .++.+
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998864 55666667777765 799999999999998865 44566677778876 78999
Q ss_pred HHHHHhccCC-CCCchhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc-----ChHHHHHH
Q 006955 388 SALLEFSSVP-IHDIISWNSIICGLAY----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA-----GLVDQGRY 457 (624)
Q Consensus 388 ~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~ 457 (624)
+|..+|++.. ..++..+..+...|.. .+++++|..+|++..+.| +...+..+...+... ++.++|..
T Consensus 241 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 241 QSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999999876 4466677788888887 899999999999998764 445666666666665 89999999
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHH
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAG 530 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~ 530 (624)
++++..+. .++..+..+...|...| +.++|++++++..+. .++..+..|...|.. .+++++|...+
T Consensus 318 ~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 318 WYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998874 24567778888887766 889999999999875 367788888888887 89999999999
Q ss_pred HHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 531 ERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 531 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
+++.+.. ++..+..|+.+|.. .+++++|...+++..+.+.
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998864 67899999999998 8999999999999988873
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-16 Score=146.86 Aligned_cols=248 Identities=9% Similarity=0.026 Sum_probs=202.5
Q ss_pred hHhhcCCCchHHHHHHHHhHHcCCCCCH--HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC
Q 006955 308 FGLGENDLGEEGLKFFVQMKESGPSPDN--ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN 385 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (624)
......|++..|+..++..... .|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3456678999999988776443 4554 3445677899999999999876644 245566777888999999999
Q ss_pred HHHHHHHhccCC-----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 386 IQSALLEFSSVP-----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 386 ~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
.++|++.++++. +.++..+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999998764 23566777788899999999999999987 4566788888999999999999999999
Q ss_pred HhhhhcCCCCCcchH---HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 461 CMKNKYFLQPRSAHY---TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++...|++++|+..++++++.+
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99874 4654322 22345555669999999999999886 35678899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHH-HHHHHHHHHHCC
Q 006955 538 PNNSGVYLILTEMYLSCGRRED-AKRIFAQMKENG 571 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 571 (624)
|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 568988887753
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=161.36 Aligned_cols=289 Identities=10% Similarity=0.005 Sum_probs=191.4
Q ss_pred HhcCChHHHHH-HHhhcCCC-------CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCc
Q 006955 280 FEMGEVGSAIK-VFELMTTR-------DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTL 351 (624)
Q Consensus 280 ~~~g~~~~A~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 351 (624)
...|++++|.. .|++.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33456666665 55544321 23445555666666666666666666665542 22333444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
+.|...+..+.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 115 ~~A~~~~~~al~~~--------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 161 (368)
T 1fch_A 115 LLAISALRRCLELK--------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRY- 161 (368)
T ss_dssp HHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcC--------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 44444444443332 335566777778888888888888888888774
Q ss_pred CCCChh-hHHH---------------HHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 432 FKPDDI-TFVG---------------VLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 432 ~~p~~~-~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
.|+.. .+.. .+..+...|++++|...++++.+...-.++..++..+...|...|++++|++.+
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 162 -TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp -STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33332 2211 233334889999999999999985321124788899999999999999999999
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccC
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKE 575 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 575 (624)
+++.+.. +.++.++..+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.++++.+.....
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 318 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS- 318 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-
Confidence 9988742 34578999999999999999999999999999999999999999999999999999999999987753211
Q ss_pred CceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhhh
Q 006955 576 PGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREIL 619 (624)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (624)
.+ . ....+|....++..+..+...+++...
T Consensus 319 ~~-~-------------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 319 RG-P-------------RGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp --------------------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred CC-c-------------cccccchhhHHHHHHHHHHHHhCChHh
Confidence 00 0 012356667777777777766665443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=161.42 Aligned_cols=268 Identities=10% Similarity=-0.011 Sum_probs=182.4
Q ss_pred cchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHH
Q 006955 269 IASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTIC 345 (624)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 345 (624)
...+..+...+.+.|++++|...|+.+.. .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 33455566666666666666666665542 244555566666666666666666666655542 22344455555555
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 006955 346 SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
...|+++.|...++.+.+..........+ + ......+..+...+...|++++|...++
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKN-K---------------------KGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-----------------------------------------CCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhh-h---------------------ccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 55555555555555544432110000000 0 0012234456778889999999999999
Q ss_pred HHHHCCCCC---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC
Q 006955 426 RMRLTDFKP---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501 (624)
Q Consensus 426 ~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (624)
++.+. .| +..++..+...+...|++++|...++++.+. .| +..++..+..+|...|++++|++.++++.+.
T Consensus 202 ~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 202 EAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99885 44 4678888999999999999999999999874 35 6888999999999999999999999998874
Q ss_pred CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------------CCchHHHHHHHHHhcCChHHHHHHHHH
Q 006955 502 GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN------------NSGVYLILTEMYLSCGRREDAKRIFAQ 566 (624)
Q Consensus 502 g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (624)
.| ++.++..+..+|...|++++|...+++++++.|. +..++..|+.++...|+.+.+..+.++
T Consensus 277 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 277 --QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred --CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 45 5889999999999999999999999999998875 367799999999999999999887754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-16 Score=160.25 Aligned_cols=366 Identities=12% Similarity=0.037 Sum_probs=190.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHcccC------------CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHH
Q 006955 175 DVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------------DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWN 242 (624)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 242 (624)
....|+.|...+...|++++|++.|++..+- ...+|..+..+|...|++++|+..+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 3567888888899999999999888876431 123466666666666766666666554432
Q ss_pred HHHHHHHhcCChHHHHHHHhhcC----CCCcchhhHHHHHHHhc--CChHHHHHHHhhcCC--C-CceehhhhhhH---h
Q 006955 243 SIISVLIRNGLVKEAHSYLEKYP----YSNIASWTNVIVGYFEM--GEVGSAIKVFELMTT--R-DVTVWNVMIFG---L 310 (624)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~ 310 (624)
+..... .....++..+..++... +++++|+..|++... | ++..+..+... +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 000000 00111222222222222 234455555544432 1 22223222222 2
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHH----cCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCH
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNATFTSVLTIC----SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNI 386 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (624)
...++.++|++.+++..+.. +.+...+..+...+ ...++.+.|...++...... +.+..++..+...|...|++
T Consensus 186 ~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred cCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 23445555555555554432 12222332222222 22344555555555555443 22334445555666666666
Q ss_pred HHHHHHhccCC---CCCchhHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006955 387 QSALLEFSSVP---IHDIISWNSIICGLAY-------------------HGYAEKALELFERMRLTDFKPDDITFVGVLS 444 (624)
Q Consensus 387 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 444 (624)
++|+..+++.. +.+..++..+..+|.. .+.++.|...+++..+.. +.+..++..+..
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 66666665544 2233344444433321 223567777888777632 233457777888
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCCCcc----hHHHHHH-HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQPRSA----HYTCVVD-LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI 519 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (624)
.+...|++++|...|+++.+. .|+.. .+..+.. .+...|+.++|++.+++..+ +.|+.....
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~-------- 409 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE-------- 409 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH--------
T ss_pred HHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH--------
Confidence 888999999999999888763 34322 2223332 23467889999999988876 556543322
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEE
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWI 581 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 581 (624)
+....+..++++.++.+|.++.++..|+.+|...|++++|.+.+++..+.+.......+|+
T Consensus 410 -~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 -KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234556777888889999999999999999999999999999999988774433333443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=154.01 Aligned_cols=273 Identities=9% Similarity=0.007 Sum_probs=184.3
Q ss_pred chhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHc
Q 006955 270 ASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICS 346 (624)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 346 (624)
..+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3345555566666666666666655532 234455555555666666666666666655542 223444555555555
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHH-HH-HHHHcCChHHHHHHH
Q 006955 347 DLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSI-IC-GLAYHGYAEKALELF 424 (624)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~ 424 (624)
..|+++.|...+..+.+..... ...+..+.... ++......+ .. .+...|++++|...+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQY-EQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT-TTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 5555555555555554432211 11111110000 000001111 22 366778899999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCC
Q 006955 425 ERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 425 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (624)
+++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|.+.++++.+..
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 9988752 335678888888999999999999999998874 35 67889999999999999999999999988742
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN------------NSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
+.++..+..+..++...|++++|...++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345788999999999999999999999999999998 6888999999999999999999988744
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-15 Score=152.94 Aligned_cols=402 Identities=12% Similarity=0.104 Sum_probs=279.4
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHhccc--C-ChhHHHHHHHHHHhCCChHHHHHHhccCCC--CChhHHHHHHHHH-
Q 006955 113 DVVSWNLVIGALVNCQRMDLAESYFKEMGA--R-DVASWTIMVNGLVREGRIVEARKLFDKMPA--KDVQAWNLMIAGY- 186 (624)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~- 186 (624)
+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|++... |++..|..++...
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5567888888 4778999999999999987 3 567889999999999999999999999874 5677777777533
Q ss_pred HHcCChhHHHH----HHHHccc------CCcccHHHHHHHHHc---------CCCHHHHHHHhhhCCC-CCcc---hHHH
Q 006955 187 LDNGCVGVAED----LFQKMHD------RDLTSWKQLINGLVN---------SRRIDAAISYFKQMPE-TCEK---TWNS 243 (624)
Q Consensus 187 ~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~~---~~~~ 243 (624)
...|+.+.|.+ +|++... .+...|...+..... .|++++|..+|++..+ |... .|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 45688877665 6766643 233456677766554 6889999999999876 3321 2222
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhh-------cC------CCC--------cee
Q 006955 244 IISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFEL-------MT------TRD--------VTV 302 (624)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~--------~~~ 302 (624)
........|. ..+..++. .+.+++..|..++.. +. .|+ ...
T Consensus 171 ~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 171 YNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 2211111111 11111111 012334444443332 11 111 123
Q ss_pred hhhhhhHhhcC----CCc----hHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC-------CCCcH-------HHHHHHHH
Q 006955 303 WNVMIFGLGEN----DLG----EEGLKFFVQMKESGPSPDNATFTSVLTICSD-------LPTLD-------LGRQIHAQ 360 (624)
Q Consensus 303 ~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~ 360 (624)
|...+...... ++. .++..+|++..... +-+...|......+.. .|+++ .|..+++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 33333222211 222 36778888877652 3345666666666553 78887 88888888
Q ss_pred HHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--CC-Cc-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 006955 361 AIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--IH-DI-ISWNSIICGLAYHGYAEKALELFERMRLTDFKPD- 435 (624)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~- 435 (624)
..+.-.+.+..++..++..+.+.|++++|..+|+++. .| ++ ..|..++..+.+.|++++|..+|++..+. .|+
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~ 389 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTR 389 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCc
Confidence 8763345567788889999999999999999999876 33 33 47888999899999999999999999874 343
Q ss_pred hhhHHHHHHH-hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC-CCcC--HHHH
Q 006955 436 DITFVGVLSA-CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEVS--PTVW 510 (624)
Q Consensus 436 ~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~ 510 (624)
...+...... +...|+.++|..+|++..+. .| ++..|..++..+.+.|+.++|..+|++....+ ..|+ ...|
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2333322222 33589999999999999885 36 68889999999999999999999999988753 2332 4488
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
...+......|+.+.+..+..++.+..|.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88888888899999999999999998884
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-16 Score=154.21 Aligned_cols=236 Identities=8% Similarity=-0.042 Sum_probs=173.6
Q ss_pred ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHH
Q 006955 300 VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITM 379 (624)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (624)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------------- 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3446666667777777777777777766542 2234444444444444444444444444443321
Q ss_pred hHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----------hhHHHHHHHhcc
Q 006955 380 YARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----------ITFVGVLSACSY 448 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~ 448 (624)
+.+..+|..+..+|...|++++|+..++++.+. .|+. ..+..+...+..
T Consensus 130 ------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 130 ------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------C
T ss_pred ------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhh
Confidence 234567888888888999999999999988873 3432 122345778899
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.|++++|..+++++.+...-.+++.++..+...|...|++++|++.++++.+.. +.++.+|..+..+|...|++++|..
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999853221257889999999999999999999999988742 4468899999999999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 529 AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++++++..|.++.++..++.+|...|++++|...++++.+..
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=155.90 Aligned_cols=374 Identities=11% Similarity=-0.014 Sum_probs=215.1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCC------------CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC------
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMP------------AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------ 205 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 205 (624)
....|+.|...+...|++++|++.|++.. .....+|+.+..+|...|++++|...+++..+-
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35678999999999999999999987653 124568999999999999999999999887531
Q ss_pred -----CcccHHHHHHHHHc--CCCHHHHHHHhhhCCC--CCc-chHHHHHHH---HHhcCChHHHHHHHhhcC---CCCc
Q 006955 206 -----DLTSWKQLINGLVN--SRRIDAAISYFKQMPE--TCE-KTWNSIISV---LIRNGLVKEAHSYLEKYP---YSNI 269 (624)
Q Consensus 206 -----~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~---~~~~ 269 (624)
...++..+..++.. .+++++|++.|++..+ |+. ..+..+..+ +...++.++|.+.++++. +.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 11234444444443 4568888888887764 432 333333333 334566666776666655 4444
Q ss_pred chhhHHHHHHHh----cCChHHHHHHHhhcCC---CCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHH
Q 006955 270 ASWTNVIVGYFE----MGEVGSAIKVFELMTT---RDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSV 341 (624)
Q Consensus 270 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 341 (624)
.++..+...+.. .|+.++|.+.+++... .+..++..+...|...|++++|+..+++..+. .|+ ...+..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 445544444433 3456667777665532 24455666667777777777777777776654 333 3333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChH
Q 006955 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAE 418 (624)
Q Consensus 342 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 418 (624)
..++...+ . ..... . ...........+..+.|...+++.. +.+..++..+...|...|+++
T Consensus 288 g~~y~~~~-----~----~~~~~-~------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKV-----F----QVMNL-R------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHH-----H----HHHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHH-----H----HhhhH-H------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 33221100 0 00000 0 0001111112234566777776654 456678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChh--hHHHHHH-HhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 419 KALELFERMRLTDFKPDDI--TFVGVLS-ACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+|+..|++..+....|... .+..+.. .....|+.++|+..+++..+ +.|+...... ....+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHHHHH
Confidence 9999999998853333221 2222222 34577999999999999887 5565433222 223445566
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
++..+.. +.++.+|..|..+|...|++++|+..|++++++.|.+|.....++
T Consensus 420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 6655432 446789999999999999999999999999999998888776654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-16 Score=139.46 Aligned_cols=195 Identities=15% Similarity=0.063 Sum_probs=159.1
Q ss_pred CCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 006955 367 NQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGV 442 (624)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 442 (624)
|++...+..+...+.+.|++++|+..|++.. +.++..|..+..++...|++++|+..+++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566677778888889999999999998765 446778899999999999999999999999984 5654 677888
Q ss_pred HHHhccc-----------ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHH
Q 006955 443 LSACSYA-----------GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVW 510 (624)
Q Consensus 443 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (624)
..++... |++++|...+++..+. .| +...+..+..+|...|++++|+..|+++.+.. .++..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 8888888 9999999999999984 57 67889999999999999999999999998866 788899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
..+..++...|++++|...++++++..|.++..+..++.++...|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999987653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=145.85 Aligned_cols=272 Identities=11% Similarity=0.006 Sum_probs=207.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCC---CCceehhhhhhHh
Q 006955 237 CEKTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTT---RDVTVWNVMIFGL 310 (624)
Q Consensus 237 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 310 (624)
+...+......+...|++++|..+++++. +.+...+..+...+...|++++|...|+++.. .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 44567888899999999999999999987 56677888999999999999999999998753 3667888899999
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHH-HH-HhHhhCCHH
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNA-TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAM-IT-MYARCGNIQ 387 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~ 387 (624)
...|++++|...++++.+. .|+.. .+..+... .++......+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 9999999999999999876 33322 12111100 0111111122 12 366677777
Q ss_pred HHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 388 SALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 388 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
+|...++++. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777655 3456778888888999999999999999988742 33456788888889999999999999999887
Q ss_pred hcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-------------HHHHHHHHHHHHhcCChHHHHHHH
Q 006955 465 KYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-------------PTVWGALLGACRIHNNIKVGEIAG 530 (624)
Q Consensus 465 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~ 530 (624)
. .| +...+..+...|...|++++|.+.++++.+. .|+ +..|..+..++...|++++|...+
T Consensus 235 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 235 I---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred c---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4 35 6778889999999999999999999988763 343 678888999999999999999998
Q ss_pred HHHHccCC
Q 006955 531 ERVMELEP 538 (624)
Q Consensus 531 ~~~~~~~p 538 (624)
+++++..|
T Consensus 310 ~~~l~~~~ 317 (327)
T 3cv0_A 310 AQNVEPFA 317 (327)
T ss_dssp TCCSHHHH
T ss_pred HHHHHhcc
Confidence 87776544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-15 Score=137.53 Aligned_cols=217 Identities=10% Similarity=-0.004 Sum_probs=164.3
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--C----C----chhHHHHHH
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--H----D----IISWNSIIC 409 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~ 409 (624)
.+...+...|+++.|..++..+.+.. .+...+..+..+|...|++++|+..+++... | + +.+|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33334444444444444444444443 3344444455555555555555555554431 1 1 457888889
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCCh
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 488 (624)
.+...|++++|...++++.+ ..|+.. .+...|++++|...++++... .| +...+..+...+...|++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999988 456533 355668899999999998873 45 677888999999999999
Q ss_pred HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
++|++.++++.+.. +.++.++..+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988743 44688899999999999999999999999999999999999999999999999999999999987
Q ss_pred HCC
Q 006955 569 ENG 571 (624)
Q Consensus 569 ~~~ 571 (624)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=134.99 Aligned_cols=247 Identities=15% Similarity=-0.035 Sum_probs=195.7
Q ss_pred hhHhhcCCCchHHHHHHHHhHHcCCC--C-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 307 IFGLGENDLGEEGLKFFVQMKESGPS--P-DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
.......|++++|+..|+++.+.... | +...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 33455678899999999998876321 1 34567778888889999999999999988875 34567788899999999
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
|++++|+..|+++. +.+..+|..+...|...|++++|...++++.+ ..|+.......+..+...|++++|...++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999998876 44678899999999999999999999999998 46666655555566677799999999998
Q ss_pred HhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 461 CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-----PTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.... .+++...+ .++..+...++.++|.+.+++..+. .|+ ..++..+..++...|++++|...++++++
T Consensus 169 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88875 23344444 4777888888999999999998863 332 56888899999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006955 536 LEPNNSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 536 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
..|.+...+ ..++...|++++|.+.+
T Consensus 244 ~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred CCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 999765443 66788889999988776
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=135.30 Aligned_cols=233 Identities=9% Similarity=-0.044 Sum_probs=170.2
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC--C----cchhHHH
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ--F----TTVSNAM 376 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l 376 (624)
|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+..... + ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4445555666666666666666665554 555566666666666666666666666655543221 1 3556667
Q ss_pred HHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHH
Q 006955 377 ITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVD 453 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 453 (624)
...|...|++++|...|++.. .|+ ...+...|++++|...++++... .|+ ...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 777777777777777777665 233 23466678889999999998873 444 357777888899999999
Q ss_pred HHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 454 QGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
+|...++++.+.. +.+...+..+...|...|++++|++.++++.+.. +.++..+..+..++...|++++|...++++
T Consensus 157 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998742 2367888999999999999999999999988742 345788999999999999999999999999
Q ss_pred HccC------CCCCchHHHHHH
Q 006955 534 MELE------PNNSGVYLILTE 549 (624)
Q Consensus 534 ~~~~------p~~~~~~~~l~~ 549 (624)
+++. |.+...+..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 9988 766666665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-16 Score=160.52 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRL---TDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCV 478 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 478 (624)
.+||++|++|++.|+.++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+. |+.||..+|+++
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHHH
Confidence 5899999999999999999999988764 578999999999999999999999999999999876 799999999999
Q ss_pred HHHhhccCCh-HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCC-----CCchHHHHHHHH
Q 006955 479 VDLLGRFGLI-DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME-LEPN-----NSGVYLILTEMY 551 (624)
Q Consensus 479 ~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~-----~~~~~~~l~~~~ 551 (624)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. ..++..+++.. ..|+ ...+...|-+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999975 78899999999999999999999888655433 22333333321 2221 123444566667
Q ss_pred HhcC
Q 006955 552 LSCG 555 (624)
Q Consensus 552 ~~~g 555 (624)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-16 Score=161.59 Aligned_cols=147 Identities=9% Similarity=0.063 Sum_probs=124.6
Q ss_pred cchhhHHHHHHHhcCChHHHHHHHhhcC-------CCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHH
Q 006955 269 IASWTNVIVGYFEMGEVGSAIKVFELMT-------TRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSV 341 (624)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 341 (624)
..+|+++|++||+.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3469999999999999999999997653 579999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCc-HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC-----CchhHHHHHHHHHHcC
Q 006955 342 LTICSDLPTL-DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH-----DIISWNSIICGLAYHG 415 (624)
Q Consensus 342 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 415 (624)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++......+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998888876666666665555421 2344555666666544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=134.18 Aligned_cols=176 Identities=11% Similarity=0.003 Sum_probs=104.5
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhccc
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYA 449 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 449 (624)
..+...|...|++++|+..|++.. +.+..+|..+...|...|++++|...+++..+. .|+. ..+..+...+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHH
Confidence 334444555555555555554443 234456666666677777777777777766653 3433 3444444233344
Q ss_pred ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC---hHHHHHHHHHcccCC-CCcC------HHHHHHHHHHHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADG-IEVS------PTVWGALLGACR 518 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~ 518 (624)
+++++|...++++.+. .| +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|.
T Consensus 156 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5777777777777663 34 45566666677766666 666777776655421 1133 246666777778
Q ss_pred hcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
..|++++|...++++++++|.++.+...+.......
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 888888888888888888887777777666555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-14 Score=141.87 Aligned_cols=379 Identities=11% Similarity=0.012 Sum_probs=188.1
Q ss_pred HHHHHHcCCChHHHHHHHHhcccC-ChhHHHHHHHHHHhCCCh---HHHHHHhccCCCCChhHHHHHHHHHHHcC-----
Q 006955 120 VIGALVNCQRMDLAESYFKEMGAR-DVASWTIMVNGLVREGRI---VEARKLFDKMPAKDVQAWNLMIAGYLDNG----- 190 (624)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g----- 190 (624)
+...+.+.|++++|.++|++..++ ++..+..|...|...|+. ++|.+.|+...+.++..+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 444555566666666666666542 444444555555555555 66666666665555555555555444443
Q ss_pred ChhHHHHHHHHcccCC-cccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcC-CCC
Q 006955 191 CVGVAEDLFQKMHDRD-LTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYP-YSN 268 (624)
Q Consensus 191 ~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~ 268 (624)
++++|+..|++..+++ ...+..|...|...+..+++.+ +.+.+.... ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~----------------------------a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN----------------------------AQQQISQWQAAGY 140 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC----------------------------HHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH----------------------------HHHHHHHHHHCCC
Confidence 4556666666655432 2344444444443332221111 111111111 122
Q ss_pred cchhhHHHHHHHhcCC----hHHHHHHHhhcCCCCceehhhhhhHhhcCC---CchHHHHHHHHhHHcCCCCCHHHHHHH
Q 006955 269 IASWTNVIVGYFEMGE----VGSAIKVFELMTTRDVTVWNVMIFGLGEND---LGEEGLKFFVQMKESGPSPDNATFTSV 341 (624)
Q Consensus 269 ~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l 341 (624)
+.....+...|...+. .+.+..+++.....++..+..|...|...| ++++|+..|++..+.| .++...+..+
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 3334444444444442 333444445444445556666666666666 6666666666666654 3333333333
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHH-H--HHcCChH
Q 006955 342 LTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICG-L--AYHGYAE 418 (624)
Q Consensus 342 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~ 418 (624)
...+... ....++.++|...|++..+.++..+..+... + ...++++
T Consensus 220 g~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 220 ARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHH
T ss_pred HHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 3333222 0011344455555544442244455555555 3 3567788
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccC-----hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChH
Q 006955 419 KALELFERMRLTDFKPDDITFVGVLSACSYAG-----LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLID 489 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 489 (624)
+|..+|++..+.| +...+..+...|. .| +.++|..+|++.. . -++..+..|...|.. ..+.+
T Consensus 269 ~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~ 339 (452)
T 3e4b_A 269 QMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQ 339 (452)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHH
Confidence 8888888877765 4455555555554 44 7888888887765 1 255666667766655 34888
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
+|.++|++..+.|. +.....|...|.. ..|.++|...++++.+..+.+.......+......++..+|..+.+
T Consensus 340 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 340 KALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88888888877652 3344455555542 4588888888888887665333322222222233456667777777
Q ss_pred HHHHC
Q 006955 566 QMKEN 570 (624)
Q Consensus 566 ~m~~~ 570 (624)
+.++.
T Consensus 417 ~~~~~ 421 (452)
T 3e4b_A 417 QELAA 421 (452)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=125.92 Aligned_cols=196 Identities=10% Similarity=-0.055 Sum_probs=150.2
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA 449 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 449 (624)
+..+...+...|++++|...|+++. +.+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 3445556666666666666666554 3355677778888888888888888888887742 23456777777888888
Q ss_pred ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 119 g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888876 22335 56677788888888899999999888877642 3357788888888888899999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 529 AGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999888888888888888888889999999999888887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=135.69 Aligned_cols=343 Identities=11% Similarity=-0.015 Sum_probs=223.7
Q ss_pred HHHHHHHcCCCHHHHHHHhhhCCC-CCcchHHHHHHHHHhcCCh---HHHHHHHhhcCCCCcchhhHHHHHHHhcC----
Q 006955 212 QLINGLVNSRRIDAAISYFKQMPE-TCEKTWNSIISVLIRNGLV---KEAHSYLEKYPYSNIASWTNVIVGYFEMG---- 283 (624)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g---- 283 (624)
.+...+.+.|++++|+++|++..+ .++..+..+...+...|+. ++|...|++....++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 466778889999999999998766 3555666666777777877 89999998888667777888888565555
Q ss_pred -ChHHHHHHHhhcCCC-CceehhhhhhHhhcCCCch---HHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHH
Q 006955 284 -EVGSAIKVFELMTTR-DVTVWNVMIFGLGENDLGE---EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIH 358 (624)
Q Consensus 284 -~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 358 (624)
+.++|...|++...+ +...+..|...|...+..+ ++.+.+......|. | .....+...+...+.++.+....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~--~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-P--EAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-T--THHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-H--HHHHHHHHHHHcCCCcccCHHHH
Confidence 678899999887654 5567777877777665543 45555555555443 2 23344555555556555555544
Q ss_pred HHHHHhCCCCCcchhHHHHHHhHhhC---CHHHHHHHhccCC---CCCchhHHHHHHHHHHc----CChHHHHHHHHHHH
Q 006955 359 AQAIKIARNQFTTVSNAMITMYARCG---NIQSALLEFSSVP---IHDIISWNSIICGLAYH----GYAEKALELFERMR 428 (624)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~ 428 (624)
....+.-...++..+..|..+|...| +.++|+..|++.. .++...+..+...|... +++++|..+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 44444434445557778888888888 8889999988776 33333446677776554 68899999999987
Q ss_pred HCCCCCChhhHHHHHHH-h--cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC-----ChHHHHHHHHHccc
Q 006955 429 LTDFKPDDITFVGVLSA-C--SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG-----LIDEAMNLLNEIRA 500 (624)
Q Consensus 429 ~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 500 (624)
.| +...+..+... + ...++.++|..+|++..+. -++..+..|...|. .| ++++|+++|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 33444445444 3 4588999999999988763 26677777887776 55 9999999999888
Q ss_pred CCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 501 DGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 501 ~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
.| ++..+..|...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|..+++...+.|.
T Consensus 315 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 33 55666677766654 34899999999998774 467888899998885 4589999999998888874
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-13 Score=122.15 Aligned_cols=197 Identities=13% Similarity=0.000 Sum_probs=153.3
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..+...+...|++++|...|+++. +.+...|..+...|...|++++|...++++.+.. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 34455666666666666666666554 3355677888888888899999999998888742 3345677778888888
Q ss_pred c-ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 449 A-GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 449 ~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
. |++++|...++++.+ .+..| +...+..+...+...|++++|++.++++.+.. +.++..+..+..++...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 8 999999999988887 22334 36677888888999999999999999887632 33577888888889999999999
Q ss_pred HHHHHHHHccCC-CCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 527 EIAGERVMELEP-NNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 527 ~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
...++++.+..| .++..+..++..+...|+.++|..+++.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999888 888888888888899999999999988886543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=126.69 Aligned_cols=198 Identities=12% Similarity=0.079 Sum_probs=145.7
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
...+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 3445556667777777777777777654 3356678888888888999999999999888742 33456777788888
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.++..+..+...+...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999888742 2367778888888999999999999999887642 34677888888888999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999888889999999999999999999999887754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-14 Score=132.71 Aligned_cols=229 Identities=11% Similarity=-0.060 Sum_probs=164.3
Q ss_pred CCCChhHHHHHHhhCCCC-------CcchHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCChhhH
Q 006955 2 RNARIQEAQNLFDKMPQR-------DTVTWNVMIRGYFKNGFLDNAMCLFNQMP---ERDMFTYNTVIAGLMQSDNVQGA 71 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 71 (624)
+.|++++|...|+++.+. ++.++..+...+...|++++|+..|+++. +.+..++..+...+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 457888888888877752 34567777888888888888888888876 34567888888888888888888
Q ss_pred HHHHhcCC---CCCchhHHHHHHHHHhCCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCChHHHHHHHHhccc--CC
Q 006955 72 KEVFDGME---VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL--KDVVSWNLVIGALVNCQRMDLAESYFKEMGA--RD 144 (624)
Q Consensus 72 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 144 (624)
...|+... +.+..++..+..++...|++++|...|+++.+ |+.......+..+...|++++|...+++... ++
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 88888776 44677888888888888888888888888874 5554444455555666888888888876654 32
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHhccCCCCC-------hhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHH
Q 006955 145 VASWTIMVNGLVREGRIVEARKLFDKMPAKD-------VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGL 217 (624)
Q Consensus 145 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 217 (624)
......++..+...++.++|.+.++...+.+ ..++..+...|.+.|++++|...|+++.+.++..+.....++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 256 (275)
T 1xnf_A 177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 256 (275)
T ss_dssp CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 2233346666777777788888887776442 366777777888888888888888888776665555555566
Q ss_pred HcCCCHHHHHHHh
Q 006955 218 VNSRRIDAAISYF 230 (624)
Q Consensus 218 ~~~~~~~~A~~~~ 230 (624)
...|++++|++.+
T Consensus 257 ~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 257 LELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHhhHHHH
Confidence 6666666666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=121.65 Aligned_cols=197 Identities=11% Similarity=0.005 Sum_probs=143.5
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
.+...|+++.|...++.+.+.. +.+...+..+...|...|++++|.+.++++. +.+...|..+...|...|++++|
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHH
Confidence 3333344444444444333332 1223334445555555566666655555543 33556788888889999999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHc
Q 006955 421 LELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEI 498 (624)
Q Consensus 421 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (624)
...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .| +...+..++..|...|++++|...++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999887444554 357777888899999999999999998874 35 6788889999999999999999999998
Q ss_pred ccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 499 RADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 499 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
.+.. +.+...+..+...+...|++++|...++++.+..|.++....
T Consensus 202 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 202 AQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8742 446778888889999999999999999999999997765543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-12 Score=119.73 Aligned_cols=178 Identities=12% Similarity=-0.021 Sum_probs=131.2
Q ss_pred hCCHHHHHHHhccCC-CCCchhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc----cChHH
Q 006955 383 CGNIQSALLEFSSVP-IHDIISWNSIICGLAY----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSY----AGLVD 453 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~ 453 (624)
.+++++|...|++.. ..++.++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHH
Confidence 455555555554443 2245566677777777 788888888888887754 55667777777777 78888
Q ss_pred HHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHH
Q 006955 454 QGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKV 525 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 525 (624)
+|...+++..+.. +...+..+...|.. .+++++|++.+++..+.+ ++..+..+...+.. .+++++
T Consensus 132 ~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 8888888877631 45666677777776 788888888888887643 45667777777877 888888
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.|.
T Consensus 205 A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 205 ALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888888765 6678888888888 8888888888888877663
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=125.89 Aligned_cols=220 Identities=9% Similarity=0.011 Sum_probs=148.3
Q ss_pred CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHH
Q 006955 299 DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378 (624)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (624)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------- 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD------------- 87 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------
Confidence 34456666667777777777777777766532 2234444444445555555555555554444331
Q ss_pred HhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHH
Q 006955 379 MYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 88 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 88 -------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred -------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 2345667788888899999999999999988752 33556788888889999999999999
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 459 FDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.++.++..+..++...|++++|...++++++..|
T Consensus 148 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 148 LQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99988742 2367888899999999999999999999988742 34578899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcC
Q 006955 539 NNSGVYLILTEMYLSCG 555 (624)
Q Consensus 539 ~~~~~~~~l~~~~~~~g 555 (624)
.++..+..+.......|
T Consensus 225 ~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TCHHHHHHHTC------
T ss_pred chHHHHHHHHHHHhhcc
Confidence 98888887766555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=122.37 Aligned_cols=222 Identities=7% Similarity=-0.073 Sum_probs=167.3
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC--CCc----hhHHHHHHHHHHcCC
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI--HDI----ISWNSIICGLAYHGY 416 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~ 416 (624)
..+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|+..+++... ++. .+|..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 34445555555555555554432 22334555566677777777777777665542 222 248889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+++|+..+++..+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...+...+++++|++.+
T Consensus 90 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999842 334468888999999999999999999998873 46 6777777873444456999999999
Q ss_pred HHcccCCCCc-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccC---CCC-----CchHHHHHHHHHhcCChHHHHHH
Q 006955 496 NEIRADGIEV-SPTVWGALLGACRIHNN---IKVGEIAGERVMELE---PNN-----SGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 496 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
+++.+ ..| +...+..+..++...|+ +++|...++++++.. |.. ..+|..++.+|...|++++|.+.
T Consensus 166 ~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99987 345 47788888888888888 888999999999865 431 25788999999999999999999
Q ss_pred HHHHHHCC
Q 006955 564 FAQMKENG 571 (624)
Q Consensus 564 ~~~m~~~~ 571 (624)
+++..+..
T Consensus 244 ~~~al~~~ 251 (272)
T 3u4t_A 244 WKNILALD 251 (272)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=115.14 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=144.8
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTC 477 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 477 (624)
++.+|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|++++|...++.+... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4567888999999999999999999999884 554 467888888999999999999999998874 35 6777888
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
+...+...++++.|.+.+.+..... +.+...+..+..++...|++++|+..++++++.+|.++.++..++.+|...|++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8889999999999999999987732 345778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCC
Q 006955 558 EDAKRIFAQMKENG 571 (624)
Q Consensus 558 ~~A~~~~~~m~~~~ 571 (624)
++|.+.+++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999988764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=8.5e-13 Score=128.99 Aligned_cols=244 Identities=12% Similarity=0.083 Sum_probs=184.2
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCCCcchhHHHHHH
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPT-LDLGRQIHAQAIKIARNQFTTVSNAMITM 379 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (624)
..|+.+...+...|++++|+..+++..+.. +-+...|..+..++...|+ +++|...++.+++.. +.+...+..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 345666666777777888888887777652 2234566666677777775 888888887777765 3355666777888
Q ss_pred hHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcc-cChHHH
Q 006955 380 YARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSY-AGLVDQ 454 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~~~~ 454 (624)
+...|++++|+..|+++. +.+..+|..+..++...|++++|+..++++.+. .|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888776 456778888999999999999999999999884 554 4678888888877 555466
Q ss_pred H-----HHHHHHhhhhcCCCC-CcchHHHHHHHhhccC--ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-----
Q 006955 455 G-----RYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG--LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN----- 521 (624)
Q Consensus 455 a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----- 521 (624)
| +..++++.+ +.| +...|..+..++...| ++++|++.+.++ +. .+.++..+..+..++...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 6 577888776 457 6778888888888888 689999999888 32 2445778888888887764
Q ss_pred ---C-hHHHHHHHHHH-HccCCCCCchHHHHHHHHHh
Q 006955 522 ---N-IKVGEIAGERV-MELEPNNSGVYLILTEMYLS 553 (624)
Q Consensus 522 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 553 (624)
+ .++|..+++++ .+++|.....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 89999888888888776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=117.09 Aligned_cols=204 Identities=10% Similarity=-0.015 Sum_probs=148.3
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHc-
Q 006955 339 TSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYH- 414 (624)
Q Consensus 339 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~- 414 (624)
..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...++++. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 333334444444444444444444432 2223344455555666666666666665544 33556788888899999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHH
Q 006955 415 GYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .| +...+..++..+...|++++|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988433444 357778888999999999999999999874 35 5788889999999999999999
Q ss_pred HHHHHcccCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 493 NLLNEIRADGIE-VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 493 ~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+.++++.+.. + .++..+..+...+...|+.+.+..+++.+.+..|.++.....+
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999988742 3 4567777777788999999999999999999999777665444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.4e-12 Score=118.55 Aligned_cols=221 Identities=12% Similarity=-0.044 Sum_probs=153.9
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhCCCCCcchhHHHHH
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD----LPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (624)
+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ ++..+..+..
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 333444444445555555555544441 122333344444444 555555555555555443 3444445555
Q ss_pred HhHh----hCCHHHHHHHhccCC-CCCchhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc-
Q 006955 379 MYAR----CGNIQSALLEFSSVP-IHDIISWNSIICGLAY----HGYAEKALELFERMRLTDFKPDDITFVGVLSACSY- 448 (624)
Q Consensus 379 ~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 448 (624)
.|.. .+++++|+..|++.. ..++.++..+...|.. .+++++|+..+++..+.+ +...+..+...+..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC
Confidence 5665 666666666666554 2356678888888888 899999999999998865 45566667777776
Q ss_pred ---cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh--
Q 006955 449 ---AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI-- 519 (624)
Q Consensus 449 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-- 519 (624)
.+++++|...+++..+. .++..+..+...|.. .+++++|++.+++..+.+ | +..+..+...+..
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGE 232 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCC
Confidence 89999999999998874 256778888899988 999999999999988753 2 6677888888888
Q ss_pred --cCChHHHHHHHHHHHccCCC
Q 006955 520 --HNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 520 --~g~~~~a~~~~~~~~~~~p~ 539 (624)
.+++++|...++++.+..|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CcccCHHHHHHHHHHHHHcCCH
Confidence 89999999999999999884
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=136.73 Aligned_cols=199 Identities=9% Similarity=-0.056 Sum_probs=138.9
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCC---------CCchhHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPI---------HDIISWNSIICGLAYHGY-----------------AEKALELFE 425 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 425 (624)
++..+...|...|++++|...+++... ....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 334455555555555555555544330 122356677777777888 888888877
Q ss_pred HHHHC----CCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHH
Q 006955 426 RMRLT----DFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLN 496 (624)
Q Consensus 426 ~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (624)
+..+. +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11111 236667777888899999999999888764211111 2377888999999999999999998
Q ss_pred HcccCC----CC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHH
Q 006955 497 EIRADG----IE-VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN------SGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 497 ~~~~~g----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
+..+.. .. ....++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 876521 11 114577788888999999999999999998865432 3478899999999999999999999
Q ss_pred HHHHC
Q 006955 566 QMKEN 570 (624)
Q Consensus 566 ~m~~~ 570 (624)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=137.20 Aligned_cols=183 Identities=7% Similarity=-0.057 Sum_probs=152.6
Q ss_pred HHHHhHhhCCH-HHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhccc--
Q 006955 376 MITMYARCGNI-QSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYA-- 449 (624)
Q Consensus 376 l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 449 (624)
+...|...|++ ++|+..|++.. +.+...|..+..+|...|++++|...|++..+ ..|+...+..+...+...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSMVLRQLQT 185 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHhcc
Confidence 33333344444 44444443332 23456788889999999999999999999998 468878888888999999
Q ss_pred -------ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc--------CChHHHHHHHHHcccCCCCc----CHHH
Q 006955 450 -------GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF--------GLIDEAMNLLNEIRADGIEV----SPTV 509 (624)
Q Consensus 450 -------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p----~~~~ 509 (624)
|++++|...++++.+. .| +...|..+..+|... |++++|++.|++..+. .| ++..
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 260 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL 260 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred CChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence 9999999999999984 46 688899999999988 9999999999999873 45 6889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 565 (624)
|..+..++...|++++|...+++++++.|.++..+..++.++...|++++|.+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999997543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=128.39 Aligned_cols=230 Identities=10% Similarity=0.058 Sum_probs=195.2
Q ss_pred CCCH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCC-HHHHHHHhccCC---CCCchhHHH
Q 006955 332 SPDN-ATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGN-IQSALLEFSSVP---IHDIISWNS 406 (624)
Q Consensus 332 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~ 406 (624)
.|+. ..|..+...+...|+++.|...++.+++.. +.+..+++.+..++...|+ +++|+..|+++. +.+...|+.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4443 456667777888999999999999999875 3456777889999999997 999999999887 457789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR 484 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (624)
+..++...|++++|+..|+++.+ +.|+ ...|..+..++...|++++|+..++++.+. .| +...|+.+..+|..
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 4564 468888999999999999999999999984 56 78899999999998
Q ss_pred -cCChHHH-----HHHHHHcccCCCCc-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 485 -FGLIDEA-----MNLLNEIRADGIEV-SPTVWGALLGACRIHN--NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 485 -~g~~~~A-----~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
.|..++| ++.+++.+. +.| +...|..+..++...| ++++|...++++ +..|.++..+..|+.+|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 6665777 588888887 456 5778999999888887 689999999998 889999999999999999875
Q ss_pred ---------ChHHHHHHHHHH-HHC
Q 006955 556 ---------RREDAKRIFAQM-KEN 570 (624)
Q Consensus 556 ---------~~~~A~~~~~~m-~~~ 570 (624)
.+++|.++++++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 358999999988 454
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=118.28 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHH
Q 006955 415 GYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
|++++|+..+++..+ ..|+ ...+..+..++...|++++|+..++++.+.. .++..+..+..+|...|++++|+.
T Consensus 98 g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444 2332 2334444444444455555555554444421 334444444445555555555555
Q ss_pred HHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 494 LLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 494 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
.++++.+. .| ++..+..+..++...|++++|...+++
T Consensus 173 ~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 173 QYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55544432 22 344444444444455555555544444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.2e-13 Score=129.03 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHh----CCC-CCcchhHHHHHHhHhhCCHHHHHHHhccCC-----CCC----chh
Q 006955 338 FTSVLTICSDLPTLDLGRQIHAQAIKI----ARN-QFTTVSNAMITMYARCGNIQSALLEFSSVP-----IHD----IIS 403 (624)
Q Consensus 338 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~ 403 (624)
+..+...+...|+++.|...+..+.+. +.+ ....++..+...|...|++++|...+++.. .++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444444554444444443322 111 112334445555666666666666555543 111 235
Q ss_pred HHHHHHHHHHcCC--------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhcccChHHHHHHH
Q 006955 404 WNSIICGLAYHGY--------------------AEKALELFERMRLT----DFKPD-DITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 404 ~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
+..+...+...|+ +++|...+++..+. +..|. ..++..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6667777777777 88888888776542 11111 23666777788889999999999
Q ss_pred HHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHH
Q 006955 459 FDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIA 529 (624)
Q Consensus 459 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 529 (624)
+++..+...-.++ ..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9887753211111 337788899999999999999999987642 1111 145777888889999999999999
Q ss_pred HHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 530 GERVMELEPNN------SGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 530 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++++++..|.. ..++..++.+|...|++++|.+.+++..+..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99998865433 3478899999999999999999999987753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-13 Score=132.74 Aligned_cols=271 Identities=9% Similarity=-0.011 Sum_probs=134.9
Q ss_pred hhHHHHHHHhcCChHHHHHHHhhcCC--C-C----ceehhhhhhHhhcCCCchHHHHHHHHhHHc----CCCCC-HHHHH
Q 006955 272 WTNVIVGYFEMGEVGSAIKVFELMTT--R-D----VTVWNVMIFGLGENDLGEEGLKFFVQMKES----GPSPD-NATFT 339 (624)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 339 (624)
+......+...|++++|...|+++.. + + ..+|..+...+...|++++|...+++.... +-.|. ...+.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34445556666666666666655532 1 1 124455555566666666666666554322 11111 22334
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCC-CCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCC--
Q 006955 340 SVLTICSDLPTLDLGRQIHAQAIKIARN-QFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGY-- 416 (624)
Q Consensus 340 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 416 (624)
.+...+...|+++.|...+..+.+.... ++.. ....++..+...|...|+
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------GEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc---------------------------chHHHHHHHHHHHHHcCCcc
Confidence 4444445555555555555544332110 0000 002244455555555555
Q ss_pred ------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--
Q 006955 417 ------------------AEKALELFERMRLT----DFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-- 471 (624)
Q Consensus 417 ------------------~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-- 471 (624)
+++|...+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 55555555554331 11111 124455555566666666666666665542110111
Q ss_pred --cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC----
Q 006955 472 --SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---- 540 (624)
Q Consensus 472 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---- 540 (624)
..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...++++.+..+..
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 225556666666666666666666665431 11111 3355556666666666666666666666643322
Q ss_pred --CchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 541 --SGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 541 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+.++..++.+|...|++++|.+.+++..+
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33566666666666666666666666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=112.18 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=141.8
Q ss_pred CcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 006955 369 FTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLS 444 (624)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 444 (624)
++.+|..+...|...|++++|+..|++.. +.++.+|..+..+|...|++++|...++..... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 45567778888888999999988888776 456778999999999999999999999999874 444 456677777
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
.+...++++.+...+.+..+. .| +...+..+...|.+.|++++|++.|++..+.. +.++.+|..+..++...|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 888999999999999998874 45 67888999999999999999999999988742 33678999999999999999
Q ss_pred HHHHHHHHHHHccCCCC
Q 006955 524 KVGEIAGERVMELEPNN 540 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~ 540 (624)
++|...++++++++|.+
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 99999999999999954
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-13 Score=132.29 Aligned_cols=293 Identities=11% Similarity=0.009 Sum_probs=206.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhcC---CCC----cchhhHHHHHHHhcCChHHHHHHHhhcCC-----C----Cce
Q 006955 238 EKTWNSIISVLIRNGLVKEAHSYLEKYP---YSN----IASWTNVIVGYFEMGEVGSAIKVFELMTT-----R----DVT 301 (624)
Q Consensus 238 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~ 301 (624)
...+......+...|++++|...++++. +.+ ..++..+...|...|++++|...+++... . ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3456677788999999999999999988 333 24677888999999999999999887642 1 245
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCC-CCC----HHHHHHHHHHHcCCCC--------------------cHHHHH
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGP-SPD----NATFTSVLTICSDLPT--------------------LDLGRQ 356 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~ 356 (624)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677888899999999999999998765310 111 2244444455555555 444444
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 006955 357 IHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIH--DIISWNSIICGLAYHGYAEKALELFERMRLTDF-K 433 (624)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~ 433 (624)
.+....+ ++.....+ ...++..+...|...|++++|...+++..+... .
T Consensus 169 ~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 169 FYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 4433322 11111100 123577778888888999999998888765210 1
Q ss_pred CC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----
Q 006955 434 PD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD---- 501 (624)
Q Consensus 434 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 501 (624)
++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++..+.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 22 136777788888999999999999987753211111 557788999999999999999999987652
Q ss_pred CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC------CCCchHHHHHHHHHhcCChH
Q 006955 502 GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP------NNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 502 g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 558 (624)
+..+ ...++..+..++...|++++|...+++++++.+ ....++..++.++...|+..
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1111 155778888899999999999999999998643 23456888888888888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6e-12 Score=132.98 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=147.3
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHH
Q 006955 400 DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTC 477 (624)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 477 (624)
+..+|+.+...|...|++++|+..|++..+ +.|+. ..+..+..++.+.|++++|+..|+++.+ +.| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788999999999999999999999998 46664 6888899999999999999999999987 457 6888999
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
+..+|...|++++|++.|++.++ +.| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999887 456 577999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 006955 557 REDAKRIFAQMKE 569 (624)
Q Consensus 557 ~~~A~~~~~~m~~ 569 (624)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-11 Score=112.73 Aligned_cols=221 Identities=9% Similarity=-0.007 Sum_probs=145.4
Q ss_pred hHHHHHHHHhHHcCCCCCHHHHHHHHHHHc-------CCCCc-------HHHHHHHHHHHHhCCCCCcchhHHHHHHhHh
Q 006955 317 EEGLKFFVQMKESGPSPDNATFTSVLTICS-------DLPTL-------DLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (624)
++|...|++..... +-+...|..+...+. ..|++ ++|..+++...+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665531 223344444444332 34554 6666666666663223344456667777777
Q ss_pred hCCHHHHHHHhccCC--CC-Cch-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh-cccChHHHHHH
Q 006955 383 CGNIQSALLEFSSVP--IH-DII-SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC-SYAGLVDQGRY 457 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~--~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 457 (624)
.|++++|..+|+++. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777655 22 333 67788888888888888888888887742 22333443333222 23688888888
Q ss_pred HHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCC-CCc--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 458 YFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEV--SPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 458 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
+|++..+. .| ++..|..++..+.+.|+.++|..+|+++.+.. ++| ....|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888774 24 67777888888888888888888888887652 354 3567777788778888888888888888
Q ss_pred HccCCCCCc
Q 006955 534 MELEPNNSG 542 (624)
Q Consensus 534 ~~~~p~~~~ 542 (624)
.+..|.++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 888886543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=131.01 Aligned_cols=202 Identities=9% Similarity=-0.028 Sum_probs=137.9
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhC-----CCCCcchhHHHHHHhHhhCC-----------------HHHHHHHhc
Q 006955 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIA-----RNQFTTVSNAMITMYARCGN-----------------IQSALLEFS 394 (624)
Q Consensus 337 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 394 (624)
.+..+...+...|+++.|...+..+.+.. .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 34444444555555555555555443321 11122344556666666777 666666665
Q ss_pred cCC-------C--CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhcccChHHHHHHHHH
Q 006955 395 SVP-------I--HDIISWNSIICGLAYHGYAEKALELFERMRLTDF-KPD----DITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 395 ~~~-------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+.. . ....++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 543 1 1234677888889999999999999998876311 112 1267788889999999999999999
Q ss_pred HhhhhcCCCC----CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 006955 461 CMKNKYFLQP----RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 461 ~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
+..+...-.. ...++..+...|...|++++|.+.+++..+. +..+ ...++..+..++...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8876421011 1567788999999999999999999987652 1111 13477788889999999999999999
Q ss_pred HHHccCC
Q 006955 532 RVMELEP 538 (624)
Q Consensus 532 ~~~~~~p 538 (624)
++.++.+
T Consensus 368 ~al~~~~ 374 (411)
T 4a1s_A 368 QHLQLAX 374 (411)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-11 Score=105.15 Aligned_cols=165 Identities=19% Similarity=0.069 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34555566666777777777777665531 2234566666667777777777777777776631 22566777778888
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
...|++++|.+.++++.+.. +.++..+..+..++...|++++|...++++.+..|.++..+..++.++...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888877642 34567777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHCC
Q 006955 563 IFAQMKENG 571 (624)
Q Consensus 563 ~~~~m~~~~ 571 (624)
.+++..+..
T Consensus 166 ~~~~~~~~~ 174 (186)
T 3as5_A 166 HFKKANELD 174 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888876643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-12 Score=123.91 Aligned_cols=227 Identities=11% Similarity=-0.026 Sum_probs=157.6
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCC--C--C-CcchhHHHHHHhHhhCCHHHHHHHhccCC-----CC-----CchhHHHH
Q 006955 343 TICSDLPTLDLGRQIHAQAIKIAR--N--Q-FTTVSNAMITMYARCGNIQSALLEFSSVP-----IH-----DIISWNSI 407 (624)
Q Consensus 343 ~~~~~~~~~~~a~~~~~~~~~~~~--~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-----~~~~~~~l 407 (624)
..+...|+++.|...+..+.+.-. + + ...++..+...|...|+++.|+..+++.. .+ ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 344556666666666666654311 1 1 12345566667777777777766665544 11 12467788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC-CCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCC-CcchHHHH
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDF-KPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQP-RSAHYTCV 478 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l 478 (624)
...|...|++++|+..+++..+... .++. .++..+...+...|++++|...+++..+.. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 8889999999999999988775311 1121 367778888999999999999999887621 1213 46678889
Q ss_pred HHHhhccCChHHHHHHHHHcccCCC---Cc-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGI---EV-SPTVWGALLGACRIHNN---IKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~---~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...|.+.|++++|.+.+++..+..- .| ....+..+...+...|+ .++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 9999999999999999998765210 12 12235667777888888 77888888776 33344566788999999
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 006955 552 LSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~ 570 (624)
...|++++|.+.+++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=124.48 Aligned_cols=246 Identities=13% Similarity=0.083 Sum_probs=146.5
Q ss_pred eehhhhhhHhhcCCCchHHHHHHHHhHHc-------CCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchh
Q 006955 301 TVWNVMIFGLGENDLGEEGLKFFVQMKES-------GPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVS 373 (624)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (624)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|+++.|...+..+.+....
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------ 101 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK------ 101 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------
Confidence 45666667777777777777777776552 11222334445555555556666655555544432100
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHh
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT------DFKPD-DITFVGVLSAC 446 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~ 446 (624)
.+..-......++..+...|...|++++|...++++.+. +-.|+ ...+..+...+
T Consensus 102 ------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 102 ------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp ------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 000000112345667777788888888888888877653 22222 24566777788
Q ss_pred cccChHHHHHHHHHHhhhhc-----CCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC-------CCCcCH------
Q 006955 447 SYAGLVDQGRYYFDCMKNKY-----FLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-------GIEVSP------ 507 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~------ 507 (624)
...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.++++.+. ...+..
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 88899999988888877631 1123 3556778888899999999999998887752 111111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 508 -TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 508 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..+...+...+.+.++...++++....|.++.++..++.+|...|++++|.+++++..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 122222233445667777777888888888888889999999999999999999999987653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=111.69 Aligned_cols=213 Identities=10% Similarity=0.024 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhH-------hhCCH-------HHHHHHhccCC----CCCchhHHHHHHHHHH
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYA-------RCGNI-------QSALLEFSSVP----IHDIISWNSIICGLAY 413 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 413 (624)
+.|..+|+.+.... +.++.++..++..+. +.|++ ++|..+|++.. +.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887753 456666766776665 35886 89999998765 2355689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhh-ccCChH
Q 006955 414 HGYAEKALELFERMRLTDFKPDDI--TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLG-RFGLID 489 (624)
Q Consensus 414 ~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 489 (624)
.|++++|..+|+++.+ +.|+.. .|..+...+.+.|++++|..+|+++.+. .| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 566543 7888888899999999999999999873 34 4555544443322 369999
Q ss_pred HHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc---CCC-CCchHHHHHHHHHhcCChHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMEL---EPN-NSGVYLILTEMYLSCGRREDAKRIF 564 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (624)
+|.++|+++.+. .| ++..|..++..+...|++++|..+|+++++. .|. ....+..++..+...|+.++|..++
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998873 44 6789999999999999999999999999995 442 4567888999999999999999999
Q ss_pred HHHHHCCC
Q 006955 565 AQMKENGV 572 (624)
Q Consensus 565 ~~m~~~~~ 572 (624)
+++.+...
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99987653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-12 Score=121.44 Aligned_cols=237 Identities=11% Similarity=-0.008 Sum_probs=149.3
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHc----CCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC-C----cch
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKES----GPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ-F----TTV 372 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~ 372 (624)
+..+...+...|++++|...+++.... +-.|. ...+..+...+...|+++.|...+....+..... + ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444445555555555555443221 11111 2334444455555556666655555544321111 1 224
Q ss_pred hHHHHHHhHhhCC--------------------HHHHHHHhccCC-----CC----CchhHHHHHHHHHHcCChHHHHHH
Q 006955 373 SNAMITMYARCGN--------------------IQSALLEFSSVP-----IH----DIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 373 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~-----~~----~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
+..+...|...|+ +++|...+++.. .+ ...++..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4556666666666 677766665543 01 234677788888999999999999
Q ss_pred HHHHHHCCC-CCC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHH
Q 006955 424 FERMRLTDF-KPD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNL 494 (624)
Q Consensus 424 ~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 494 (624)
+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 998765310 111 136777788889999999999999988763211111 56778889999999999999999
Q ss_pred HHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 495 LNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 495 ~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
++++.+. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9987652 1111 1447778888999999999999999999987763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.8e-11 Score=108.61 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVD 480 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 480 (624)
..|......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+ ..| +...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444555555555555555554432113334444444445555555555555555444 223 3344444555
Q ss_pred HhhccCChHHHHHHHHHcccCCCCc-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CCchHHHHHHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEV-SP-------TVWGALLGACRIHNNIKVGEIAGERVMELEPN--NSGVYLILTEM 550 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 550 (624)
+|...|++++|++.+++..+ ..| ++ ..|..+...+...|++++|+..++++++..|. ++..+..++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 55555555555555555444 222 22 22444444444555555555555555555554 44555555555
Q ss_pred HHhcCCh---------------------------HHHHHHHHHHHHCC
Q 006955 551 YLSCGRR---------------------------EDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~---------------------------~~A~~~~~~m~~~~ 571 (624)
|...|+. ++|...+++..+..
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5555444 99999999887753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-11 Score=121.34 Aligned_cols=180 Identities=11% Similarity=-0.019 Sum_probs=157.1
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHH
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGYA-EKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+++++..++... +.+...|..+...+...|++ ++|+..|++..+. .|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443 34667888899999999999 9999999999984 555 5788899999999999999999999
Q ss_pred HhhhhcCCCCCcchHHHHHHHhhcc---------CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc--------CCh
Q 006955 461 CMKNKYFLQPRSAHYTCVVDLLGRF---------GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH--------NNI 523 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g~~ 523 (624)
++.+ +.|+...+..+..+|... |++++|++.++++.+.. +.+...|..+..++... |++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9987 468888899999999999 99999999999998742 33588999999999888 999
Q ss_pred HHHHHHHHHHHccCC---CCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 524 KVGEIAGERVMELEP---NNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++|...++++++++| .++..+..++.+|...|++++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=105.85 Aligned_cols=206 Identities=8% Similarity=0.035 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHH
Q 006955 333 PDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIIC 409 (624)
Q Consensus 333 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~ 409 (624)
.|+..+......+...|++++|...|..+.+...+++...+..+..++...|++++|+..|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566666677777778888888888877776654555555556777777777777777776654 224456666667
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC---cchHHHH
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPDD--------ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR---SAHYTCV 478 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 478 (624)
+|...|++++|+..+++..+. .|+. ..+..+...+...|++++|...++++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 777777777777777776663 3432 2345555566666777777777776665 3343 3455555
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..+|...| ...++++...+ ..+...+.... ....+.+++|...+++++++.|.++.+...+..+.
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 55554333 33334443322 22233333322 23345569999999999999999888777776554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-10 Score=100.39 Aligned_cols=168 Identities=13% Similarity=-0.041 Sum_probs=143.2
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY 448 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 448 (624)
.+..+...+...|++++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34557778889999999999999887 3466788889999999999999999999998852 3355678888889999
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+.. +.++..+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999875 22367888899999999999999999999988743 4467889999999999999999999
Q ss_pred HHHHHHccCCCCCch
Q 006955 529 AGERVMELEPNNSGV 543 (624)
Q Consensus 529 ~~~~~~~~~p~~~~~ 543 (624)
.++++.+..|.++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999988866543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-09 Score=107.99 Aligned_cols=197 Identities=15% Similarity=0.055 Sum_probs=121.7
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC-------C---C-CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chhh
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP-------I---H-DIISWNSIICGLAYHGYAEKALELFERMRLTDFK--P--DDIT 438 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~ 438 (624)
..+...+...|++++|...+++.. . | ....+..+...+...|++++|...+++....... | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 344555566666666665555443 1 1 1224555667777888888888888877653211 1 1134
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHH-----HHHHHhhccCChHHHHHHHHHcccCCCCc---CHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYT-----CVVDLLGRFGLIDEAMNLLNEIRADGIEV---SPTVW 510 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~ 510 (624)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55666677778888888888887765321111111121 23344667888888888888877543211 12245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNN------SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..++...|++++|...++++....+.. ...+..++.++...|++++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666677788888888888888877643321 135667788888888888888888877653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=118.21 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=155.8
Q ss_pred hHhhcCCCchHHHHHHHHhHHc----CCCC-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCC------cchhHHH
Q 006955 308 FGLGENDLGEEGLKFFVQMKES----GPSP-DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQF------TTVSNAM 376 (624)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 376 (624)
..+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.....+ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3455566666666666665432 1111 123455555566666666666666666554321111 2345666
Q ss_pred HHHhHhhCCHHHHHHHhccCC-----CCC----chhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHH
Q 006955 377 ITMYARCGNIQSALLEFSSVP-----IHD----IISWNSIICGLAYHGYAEKALELFERMRLT----DFKPD-DITFVGV 442 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l 442 (624)
...|...|++++|+..|++.. .++ ..++..+...|...|++++|+..+++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 777777788887777776654 111 136788889999999999999999988762 22233 3578888
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCC--CC-CcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCcC-HHHHHHHHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFL--QP-RSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEVS-PTVWGALLG 515 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 515 (624)
...+...|++++|...+++..+...- .| ....+..+...|...|+ +++|+.++++.. ..|+ ...+..+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHH
Confidence 88999999999999999988763211 11 22335678889999999 888888888874 3443 457778889
Q ss_pred HHHhcCChHHHHHHHHHHHccCC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
.|...|++++|...++++.++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-09 Score=111.76 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCC---hhHHHHHHHHcccC-----CcccHHH
Q 006955 144 DVASWTIMVNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGC---VGVAEDLFQKMHDR-----DLTSWKQ 212 (624)
Q Consensus 144 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-----~~~~~~~ 212 (624)
|...|..++..+.+.+.++.+..+|+.+.. .....|...+..-.+.|+ ++.+..+|++.... ++..|..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 778899999988888999999999988873 366778888888888888 99999999998763 3345555
Q ss_pred HHHHHHcCCCH--------HHHHHHhhhCC------CCC-cchHHHHHHHHH---------hcCChHHHHHHHhhcC
Q 006955 213 LINGLVNSRRI--------DAAISYFKQMP------ETC-EKTWNSIISVLI---------RNGLVKEAHSYLEKYP 265 (624)
Q Consensus 213 l~~~~~~~~~~--------~~A~~~~~~~~------~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 265 (624)
.+......++. +...++|+... +++ ...|...+.... ..+..+.+..+|..+.
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 55544444432 22335555432 222 235555554433 2334566777777777
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-09 Score=108.05 Aligned_cols=220 Identities=6% Similarity=-0.073 Sum_probs=154.2
Q ss_pred HHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccC
Q 006955 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGR-QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396 (624)
Q Consensus 318 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (624)
.+..+|++.... ++-....|.....-+...|+.+.|. .++...... .|.+..++-..+....+.|+++.|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567666554 2334555555555566667778886 888888763 3455556666777888888888888888876
Q ss_pred CC-------------CC------------chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcc-cC
Q 006955 397 PI-------------HD------------IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSY-AG 450 (624)
Q Consensus 397 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g 450 (624)
.. |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 52 21 235777888888889999999999999875111122333322222222 35
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChHHHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
+.+.|..+|+...+.. +-+...+...++.....|+.+.|..+|++.......+ ....|...+.--...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5899999999998863 2356667788888888899999999999988753212 34577777777788999999999
Q ss_pred HHHHHHccCCCCC
Q 006955 529 AGERVMELEPNNS 541 (624)
Q Consensus 529 ~~~~~~~~~p~~~ 541 (624)
+.+++.+..|+++
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999999999654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=118.42 Aligned_cols=247 Identities=11% Similarity=0.084 Sum_probs=156.2
Q ss_pred CcchhhHHHHHHHhcCChHHHHHHHhhcCC--------C---CceehhhhhhHhhcCCCchHHHHHHHHhHHc------C
Q 006955 268 NIASWTNVIVGYFEMGEVGSAIKVFELMTT--------R---DVTVWNVMIFGLGENDLGEEGLKFFVQMKES------G 330 (624)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 330 (624)
+..++..+...+...|++++|...|+++.. . ...++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345688889999999999999999988764 2 2456788889999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHH
Q 006955 331 PSP-DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIIC 409 (624)
Q Consensus 331 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 409 (624)
-.| ....+..+...+...|+++.|...+..+.+..... +..-......++..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------------------LGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------------HCTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------------------cCCCChHHHHHHHHHHH
Confidence 223 24566677777788888888888887765531000 00000002234666667
Q ss_pred HHHHcCChHHHHHHHHHHHHC------CCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhc------CCCC-CcchH
Q 006955 410 GLAYHGYAEKALELFERMRLT------DFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKY------FLQP-RSAHY 475 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~------g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~ 475 (624)
.+...|++++|+..++++.+. +..|.. .++..+...+...|++++|...++++.+.. ...| ....+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 777777777777777776653 112222 356667777788888888888888776521 1112 12222
Q ss_pred ------HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 476 ------TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 476 ------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..+...+...+.+.+|...++...... +....++..+..+|...|++++|...+++++++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222333444556666666777666421 335668889999999999999999999999998773
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=112.68 Aligned_cols=225 Identities=11% Similarity=-0.039 Sum_probs=153.4
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCC-C----CcchhHHHHHHhHhhCCHHHHHHHhccCC-----CC-----CchhHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARN-Q----FTTVSNAMITMYARCGNIQSALLEFSSVP-----IH-----DIISWNSII 408 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-----~~~~~~~l~ 408 (624)
.+...|+++.|...+..+.+.... + ...++..+...|...|+++.|...+++.. .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 345566666666666665543211 1 12345556667777777777766665543 11 134677888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCCCcchHHHHHH
Q 006955 409 CGLAYHGYAEKALELFERMRLTDF-KPD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQPRSAHYTCVVD 480 (624)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~ 480 (624)
..|...|++++|++.+++..+..- .++ ..++..+..++...|++++|...+++..+.. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 889999999999999988765210 112 2366777888899999999999999887621 11123667788899
Q ss_pred HhhccCChHHHHHHHHHcccCCC---CcC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGI---EVS-PTVWGALLGACRIHNN---IKVGEIAGERVMELEPNNSGVYLILTEMYLS 553 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 553 (624)
+|.+.|++++|.+.+++..+..- .|. ...+..+...+...|+ ..+|...+++.. ..|.....+..++..|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHH
Confidence 99999999999999998765311 222 3355556666777788 777777777632 233345678889999999
Q ss_pred cCChHHHHHHHHHHHH
Q 006955 554 CGRREDAKRIFAQMKE 569 (624)
Q Consensus 554 ~g~~~~A~~~~~~m~~ 569 (624)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.8e-10 Score=102.19 Aligned_cols=188 Identities=10% Similarity=0.024 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-SAHYTC 477 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 477 (624)
.+..+...+...|++++|...|+++.+. .|+ ...+..+..++...|++++|...|+++.+...-.|. ...+..
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3333444444555555555555555442 222 223344444445555555555555554443110111 223334
Q ss_pred HHHHhhc--------cCChHHHHHHHHHcccCCCCcC-HHH-----------------HHHHHHHHHhcCChHHHHHHHH
Q 006955 478 VVDLLGR--------FGLIDEAMNLLNEIRADGIEVS-PTV-----------------WGALLGACRIHNNIKVGEIAGE 531 (624)
Q Consensus 478 l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~-~~~-----------------~~~l~~~~~~~g~~~~a~~~~~ 531 (624)
+..++.. .|++++|+..|+++++. .|+ +.. +..+...+...|++++|+..++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444 55555555555554432 221 112 3566778899999999999999
Q ss_pred HHHccCCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCc
Q 006955 532 RVMELEPNNS---GVYLILTEMYLSC----------GRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHP 598 (624)
Q Consensus 532 ~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (624)
++++..|.++ ..+..++.+|... |++++|...++++.+.. | .+|
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p-------------------~~~ 229 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P-------------------DSP 229 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-------------------TCT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-------------------CCh
Confidence 9999999744 4789999999977 89999999999987753 2 266
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 006955 599 KFHRLRYLLNLLHTEIERE 617 (624)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~ 617 (624)
...+....+..+...++..
T Consensus 230 ~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777777776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-09 Score=97.51 Aligned_cols=176 Identities=12% Similarity=-0.013 Sum_probs=115.7
Q ss_pred HHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 389 ALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-DDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 389 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
|+..|++.. .++..++..+..++...|++++|++++.+....|-.+ +...+..++..+.+.|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2344455566677777888888888888776544322 335666677778888888888888888776
Q ss_pred hcCCCC-----CcchHHHHHHH--hhccC--ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 465 KYFLQP-----RSAHYTCVVDL--LGRFG--LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 465 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
..| +..+...|+.+ ....| +..+|..+|+++.+ ..|+...-..++.++...|++++|+..++.+.+
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345 24444555544 33334 78888888888765 245533333444467778888888888887766
Q ss_pred c----------CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 536 L----------EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 536 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
. +|.|+.++..++.+....|+ +|.+++.++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5 47777888777777777776 7778888777653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=120.50 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=136.8
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSA 445 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 445 (624)
...++.|..+|.+.|++++|++.|++.. +.+..+|+.+..+|.+.|++++|+..|++..+ +.|+. ..+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4455667777777888888888777765 34567889999999999999999999999988 46654 688889999
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 523 (624)
+...|++++|++.++++.+ +.| +...|..+..+|...|++++|++.|++.++ +.| ++..+..+..++...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999987 457 678899999999999999999999999887 456 477899999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 006955 524 KVGEIAGERVMELEP 538 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p 538 (624)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999887544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-09 Score=105.73 Aligned_cols=226 Identities=10% Similarity=0.034 Sum_probs=149.8
Q ss_pred HhhcCCCchHHHHHHHHhHHcC-CCCC----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCC------CcchhHHHH
Q 006955 309 GLGENDLGEEGLKFFVQMKESG-PSPD----NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQ------FTTVSNAMI 377 (624)
Q Consensus 309 ~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 377 (624)
.+...|++++|+..|++..+.. -.++ ...+..+...+...|+++.|...+....+..... ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3455666666666666554321 0121 2344555556666666666666666555432111 123445666
Q ss_pred HHhHhhCCHHHHHHHhccCCC-----CC----chhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChhhHHHHHH
Q 006955 378 TMYARCGNIQSALLEFSSVPI-----HD----IISWNSIICGLAYHGYAEKALELFERMRLT----DFKPDDITFVGVLS 444 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 444 (624)
..|...|++++|+..|++... ++ ..+++.+..+|...|++++|+..+++..+. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 777777777777777665541 11 246777888899999999999999988761 11222467778888
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCcC-HHHHHHHHHHH
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQPR---SAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEVS-PTVWGALLGAC 517 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 517 (624)
.+...|++++|...+++..+...-.++ ...+..+...|...|+ +.+|+..+++.. ..|+ ...+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHH
Confidence 999999999999999998874322112 3345667777888888 888888888743 3443 44667788889
Q ss_pred HhcCChHHHHHHHHHHHccC
Q 006955 518 RIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~ 537 (624)
...|++++|...++++.+..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999987643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-11 Score=98.44 Aligned_cols=140 Identities=12% Similarity=-0.025 Sum_probs=95.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC
Q 006955 410 GLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL 487 (624)
Q Consensus 410 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 487 (624)
.+...|++++|+..++.... ..|+. ..+..+...|.+.|++++|++.|+++.+ +.| ++..|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 33445566666666666544 23332 3445566667777777777777777766 345 56777777778888888
Q ss_pred hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 488 IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEI-AGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
+++|+..|++..+ +.| ++..|..+...+...|++++|.+ +++++++++|.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887776 445 46677777777777777766554 4578888888888888777777777664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.9e-10 Score=104.38 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=143.1
Q ss_pred cCCCCcHHHHHHHHHHHHh-------CCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC-------C----CchhHHHH
Q 006955 346 SDLPTLDLGRQIHAQAIKI-------ARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI-------H----DIISWNSI 407 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 407 (624)
...|+++.|...+++..+. ..+....++..+...|...|++++|+..++++.. + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877653 1122355667778888888888888887776541 1 23467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhc-----CCCC-Ccch
Q 006955 408 ICGLAYHGYAEKALELFERMRLT------DFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKY-----FLQP-RSAH 474 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 474 (624)
...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...++++.+.. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77888888888888888887653 11122 3466677777888888888888888877630 0123 3556
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccC-------CCCcC-HHHHHHHHHHHHhcCC------hHHHHHHHHHHHccCCCC
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRAD-------GIEVS-PTVWGALLGACRIHNN------IKVGEIAGERVMELEPNN 540 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 540 (624)
+..+..+|...|++++|.+.++++.+. ...+. ...|..+...+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 777788888888888888888876642 11222 2233333333332222 233333333333344555
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 541 SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..+..++.+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667999999999999999999999987653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.9e-10 Score=118.51 Aligned_cols=147 Identities=13% Similarity=-0.086 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHH
Q 006955 401 IISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCV 478 (624)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 478 (624)
...|..+..++...|++++|+..+++..+. .|+ ...+..+..++...|++++|...|+++.+ +.| +...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 334444445555555555555555555442 232 23444444455555555555555555544 223 34445555
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
..+|.+.|++++ ++.|+++.+ +.| +...|..+..++...|++++|...++++++++|.++..+..++.++...|
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 555555555555 555555444 222 34445555555555555555555555555555555555555555554433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-09 Score=88.21 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=86.3
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACR 518 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (624)
+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|.+.++++...+ +.++..+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3444455555566666666666655431 1245556666666777777777777777766532 334566667777777
Q ss_pred hcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 519 IHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 519 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7778888888888777777777777777888888888888888887777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-09 Score=94.61 Aligned_cols=62 Identities=8% Similarity=0.055 Sum_probs=54.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNNS---GVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
.+...+...|+++.|...++++++..|.++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 455668899999999999999999999775 56999999999999999999999999887643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=99.89 Aligned_cols=181 Identities=11% Similarity=-0.040 Sum_probs=130.9
Q ss_pred chhHHHHHHhHhhCCHHHHHHHhccCC--CC-C---chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhhHH
Q 006955 371 TVSNAMITMYARCGNIQSALLEFSSVP--IH-D---IISWNSIICGLAYHGYAEKALELFERMRLTDFKPD----DITFV 440 (624)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~ 440 (624)
..+-.+...+.+.|++++|+..|+++. .| + ...+..+..+|...|++++|+..|++..+. .|+ ...+.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHHH
Confidence 334445666777778888887777765 22 3 456777788888889999999999888874 332 23555
Q ss_pred HHHHHhcc--------cChHHHHHHHHHHhhhhcCCCC-CcchH-----------------HHHHHHhhccCChHHHHHH
Q 006955 441 GVLSACSY--------AGLVDQGRYYFDCMKNKYFLQP-RSAHY-----------------TCVVDLLGRFGLIDEAMNL 494 (624)
Q Consensus 441 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p-~~~~~-----------------~~l~~~~~~~g~~~~A~~~ 494 (624)
.+..++.. .|++++|...|+++.+.. | +.... ..+...|.+.|++++|+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66667777 889999999999888753 5 33333 4568889999999999999
Q ss_pred HHHcccCCCCcC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCCch---HHHHHHHHHhcCCh
Q 006955 495 LNEIRADGIEVS----PTVWGALLGACRIH----------NNIKVGEIAGERVMELEPNNSGV---YLILTEMYLSCGRR 557 (624)
Q Consensus 495 ~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~ 557 (624)
|+++++. .|+ +..+..+..++... |++++|...++++++..|+++.. ...+..++...|++
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 9998863 343 45677777788765 89999999999999999977643 44455455444444
Q ss_pred H
Q 006955 558 E 558 (624)
Q Consensus 558 ~ 558 (624)
+
T Consensus 249 ~ 249 (261)
T 3qky_A 249 E 249 (261)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.7e-09 Score=100.86 Aligned_cols=131 Identities=10% Similarity=-0.073 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-------hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc-c
Q 006955 403 SWNSIICGLAYH-GYAEKALELFERMRLTDFKPD-------DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS-A 473 (624)
Q Consensus 403 ~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~ 473 (624)
+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|++++|...++++.+. .|+. .
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~ 193 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCc
Confidence 455666667764 7777777777776652 111 234566666677777777777777776653 2321 1
Q ss_pred -------hHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHccCC
Q 006955 474 -------HYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT------VWGALLGACR--IHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 474 -------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p 538 (624)
.|..+..++...|++++|+..+++..+ +.|+.. .+..++.++. ..+++++|...|+++..++|
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 345566667777777777777777665 334321 2333444443 34566777777766666666
Q ss_pred CC
Q 006955 539 NN 540 (624)
Q Consensus 539 ~~ 540 (624)
..
T Consensus 272 ~~ 273 (292)
T 1qqe_A 272 WK 273 (292)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-10 Score=104.02 Aligned_cols=200 Identities=9% Similarity=-0.029 Sum_probs=143.9
Q ss_pred CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC-------CC--CchhHHHHHHHHHHcCChHHH
Q 006955 350 TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP-------IH--DIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a 420 (624)
+++.|...+..+ ...|...|++++|...|++.. .+ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366776666554 345677788888877776654 11 135788899999999999999
Q ss_pred HHHHHHHHHCCCC-CC----hhhHHHHHHHhccc-ChHHHHHHHHHHhhhhcCCCCC-------cchHHHHHHHhhccCC
Q 006955 421 LELFERMRLTDFK-PD----DITFVGVLSACSYA-GLVDQGRYYFDCMKNKYFLQPR-------SAHYTCVVDLLGRFGL 487 (624)
Q Consensus 421 ~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 487 (624)
+..+++..+.... .+ ..++..+...|... |++++|+..+++..+. .|+ ..++..+...|.+.|+
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~---~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW---YAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH---HHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 9999988763111 11 24777888889986 9999999999998874 231 3568889999999999
Q ss_pred hHHHHHHHHHcccCCCCcCH------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch-----HHHHHHHHH--hc
Q 006955 488 IDEAMNLLNEIRADGIEVSP------TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV-----YLILTEMYL--SC 554 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 554 (624)
+++|+..+++..+....... ..+..+..++...|++++|...+++++++.|..+.. +..++.++. ..
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 99999999998874321111 156777788899999999999999999999975543 445666664 45
Q ss_pred CChHHHHHHHHHH
Q 006955 555 GRREDAKRIFAQM 567 (624)
Q Consensus 555 g~~~~A~~~~~~m 567 (624)
+++++|+..++++
T Consensus 254 ~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 254 EQLSEHCKEFDNF 266 (292)
T ss_dssp TTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccC
Confidence 6788888887544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=6.4e-09 Score=96.16 Aligned_cols=184 Identities=11% Similarity=0.050 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCC-----CCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006955 354 GRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPI-----HDIISWNSIICGLAYHGYAEKALELFERMR 428 (624)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 428 (624)
+...+++....+ +++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 34444445778888889999999999988742 244577788899999999999999999998
Q ss_pred HCCCCC-----ChhhHHHHHHH--hcc--cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcc
Q 006955 429 LTDFKP-----DDITFVGVLSA--CSY--AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIR 499 (624)
Q Consensus 429 ~~g~~p-----~~~~~~~ll~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (624)
+ ..| +..+...+..+ ... .++.++|..+|+++...+ |+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 577 35666666655 332 348999999999998753 553333445558899999999999999766
Q ss_pred cC-----CC---Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 500 AD-----GI---EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 500 ~~-----g~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+. .. .| ++.++..++......|+ .|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 52 00 24 56677677766666787 889999999999998875543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-10 Score=103.76 Aligned_cols=227 Identities=11% Similarity=0.049 Sum_probs=160.1
Q ss_pred hhcCCCchHHHHHHHHhHHc-----C-CCC-CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh------CC-CCCcchhHH
Q 006955 310 LGENDLGEEGLKFFVQMKES-----G-PSP-DNATFTSVLTICSDLPTLDLGRQIHAQAIKI------AR-NQFTTVSNA 375 (624)
Q Consensus 310 ~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 375 (624)
....|++++|+.+|++..+. + -.| ....+..+...+...|+++.|...+..+.+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45679999999999997663 1 112 3457778888999999999999999988765 22 233557788
Q ss_pred HHHHhHhhCCHHHHHHHhccCCC-------C----CchhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hh
Q 006955 376 MITMYARCGNIQSALLEFSSVPI-------H----DIISWNSIICGLAYHGYAEKALELFERMRLT------DFKPD-DI 437 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~ 437 (624)
+...|...|++++|...+++... + ...++..+...|...|++++|...++++.+. +-.|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987651 2 2457888899999999999999999999984 11332 35
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhc------CCCC-CcchHHHHHHHhhcc------CChHHHHHHHHHcccCCCC
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKY------FLQP-RSAHYTCVVDLLGRF------GLIDEAMNLLNEIRADGIE 504 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~g~~ 504 (624)
++..+...+...|++++|..+++++.+.. ...| ....+..+...+... ..+..+...++..... .+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence 77788889999999999999999988641 1123 233444444433332 2344455555544431 12
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
....++..+..+|...|++++|...++++++..
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 245678889999999999999999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=91.85 Aligned_cols=124 Identities=12% Similarity=0.022 Sum_probs=105.6
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHh
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRI 519 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 519 (624)
|...+...|++++|+..++.... ..| ++..+..+...|.+.|++++|++.|++.++ +.| ++.+|..+..++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44566778999999999998776 345 566677899999999999999999999987 455 68899999999999
Q ss_pred cCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH-HHHHHHC
Q 006955 520 HNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRI-FAQMKEN 570 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 570 (624)
.|++++|+..++++++++|.++.++..++.+|...|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999877665 5777664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.8e-09 Score=97.75 Aligned_cols=178 Identities=6% Similarity=-0.098 Sum_probs=144.1
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 386 IQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
.+.....+....+.+...+..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34455555555555666777888889999999999999999988 4564 46778888899999999999999999887
Q ss_pred hcCCCCCcchHHH-HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--C
Q 006955 465 KYFLQPRSAHYTC-VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN--S 541 (624)
Q Consensus 465 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 541 (624)
. .|+...... ....+...++.++|+..+++..+.. +.++..+..+..++...|++++|...++++++.+|.+ +
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 4 465443332 2333667788888999999988742 4467899999999999999999999999999999987 7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+..|+.+|...|+.++|...+++...
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8899999999999999999998887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-08 Score=88.42 Aligned_cols=164 Identities=10% Similarity=-0.074 Sum_probs=137.1
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccC----hHHHHHHHHHHhhhhcCCCCCcch
Q 006955 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAG----LVDQGRYYFDCMKNKYFLQPRSAH 474 (624)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 474 (624)
.++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + +.++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 366778888888888999999999999998865 55667777777777 6 899999999998763 26777
Q ss_pred HHHHHHHhhc----cCChHHHHHHHHHcccCCCC-cCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCCchHH
Q 006955 475 YTCVVDLLGR----FGLIDEAMNLLNEIRADGIE-VSPTVWGALLGACRI----HNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 475 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+..|...|.. .+++++|+++|++..+.|.. ..+..+..|...|.. .+++++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888887 88999999999999985521 126788888888877 78999999999999998 55888999
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 006955 546 ILTEMYLSC-G-----RREDAKRIFAQMKENG 571 (624)
Q Consensus 546 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~ 571 (624)
.|+.+|... | ++++|.+.+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999864 3 8999999999998887
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-08 Score=97.70 Aligned_cols=197 Identities=13% Similarity=0.011 Sum_probs=137.9
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC-----CCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC--CCh-h
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP-----IHDI----ISWNSIICGLAYHGYAEKALELFERMRLT----DFK--PDD-I 437 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~--p~~-~ 437 (624)
+.+...+...|++++|...+++.. ..+. .++..+...+...|++++|...+++..+. +.. |.. .
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 334455566666666666665543 1111 23566778889999999999999987653 222 322 3
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcC-CCC--CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHH--
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYF-LQP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWG-- 511 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~-- 511 (624)
.+..+...+...|++++|...+++...... ..| ....+..+...+...|++++|...+++.....-.+ .+..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 556677788999999999999999876421 111 13457788889999999999999999876431111 111222
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHHccCCCCCc----hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 512 ---ALLGACRIHNNIKVGEIAGERVMELEPNNSG----VYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 512 ---~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..+...|++++|...++++....|.++. .+..++.++...|++++|...+++....
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334477899999999999999987764322 4678899999999999999999987653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=83.02 Aligned_cols=133 Identities=15% Similarity=0.160 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.... +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46778888889999999999999988753 3345677778888889999999999999988742 23677788899999
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999988742 346778888999999999999999999999998884
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-09 Score=87.75 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=93.3
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+.| +...+..+...+.+.|++++|++.|+++.+ +.| ++..|..+..++...|++++|...|+++++++|.++..+.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 556 577788899999999999999999999987 455 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 546 ILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++.+|...|++++|...|++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.9e-09 Score=90.18 Aligned_cols=159 Identities=7% Similarity=-0.030 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHH-
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL- 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~- 481 (624)
+......+...|++++|...+++..+ ..|+ ...+..+...+...|++++|...++++.+. .|++..+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 44445556666667777766666655 2333 345556666666677777777777666553 2332222222111
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--CchHHHHHHHHHhcCChH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN--SGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~ 558 (624)
+...+...+|++.+++..+ ..| ++..+..+..++...|++++|...++++++..|.. +..+..++.++...|+.+
T Consensus 84 ~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1122233346788888776 455 57788888899999999999999999999999864 558999999999999999
Q ss_pred HHHHHHHHHHH
Q 006955 559 DAKRIFAQMKE 569 (624)
Q Consensus 559 ~A~~~~~~m~~ 569 (624)
+|...+++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-08 Score=91.36 Aligned_cols=122 Identities=12% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHh
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRI 519 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 519 (624)
+..++...|++++|...+++..+. .| ++..+..+..+|...|++++|+..|++.++ +.| ++..|..+..++..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 444555555566665555555542 34 455555555555555666666666655554 233 34455555555443
Q ss_pred cCC--hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 520 HNN--IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 520 ~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.|+ .+.+...++++....| ....+..++.++...|++++|...|++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 332 2333344444332222 112334445555555566666666555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=106.82 Aligned_cols=160 Identities=11% Similarity=0.029 Sum_probs=126.1
Q ss_pred hCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHH
Q 006955 383 CGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
.|++++|+..+++.. +.+...|..+...+...|++++|.+.+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999877 345678899999999999999999999999984 554 56888888899999999999999
Q ss_pred HHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHH
Q 006955 459 FDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH---NNIKVGEIAGERVM 534 (624)
Q Consensus 459 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 534 (624)
+++..+. .| +...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|...+++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999884 46 67889999999999999999999999988742 33577888999999999 99999999999999
Q ss_pred ccCCCCCchHHHHH
Q 006955 535 ELEPNNSGVYLILT 548 (624)
Q Consensus 535 ~~~p~~~~~~~~l~ 548 (624)
+.+|.+...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99998888888776
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-08 Score=90.28 Aligned_cols=127 Identities=6% Similarity=-0.055 Sum_probs=99.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhh
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLG 483 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 483 (624)
.+..+|...|++++|+..+++..+. .|+ ...+..+..++...|++++|...|+++.+ +.| ++..+..+..+|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3888999999999999999999984 564 46888888899999999999999999998 457 6888888988887
Q ss_pred ccCC--hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 484 RFGL--IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 484 ~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..|+ .+.+...++.... ..|....+..+..++...|++++|+..+++++++.|.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6654 4456666666552 2333334455566677889999999999999999994
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-09 Score=83.62 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=59.0
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+......+.+.|++++|++.|++..+. .| ++..|..+..+|.+.|++++|++.+++.++.. +.++..|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3444445555555555555555555542 23 45555555556666666666666666555421 2234455555555
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
+...|++++|...|+++++++|.++.++..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 666666666666666666666655555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.6e-09 Score=87.16 Aligned_cols=103 Identities=8% Similarity=-0.018 Sum_probs=88.6
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+.| +...+..+...+...|++++|+..|++..... +.++..|..+..++...|++++|...++++++++|.++..+..
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 445 56677788888999999999999999987732 3467888888899999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|.+.+++..+..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=95.05 Aligned_cols=159 Identities=13% Similarity=-0.010 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCC--C--Cc
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDF---KPD--DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ--P--RS 472 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p--~~ 472 (624)
.+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+..+++..+...-. + ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 3577778888888999999998888765211 121 2467777788888 99999999999887642100 0 14
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch----
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV---- 543 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---- 543 (624)
.++..+..+|.+.|++++|++.+++..+. +..+. ...+..++.++...|++++|...+++++ ..|.....
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 57788999999999999999999987752 11121 2256666677788899999999999999 88865543
Q ss_pred -HHHHHHHHHhcCChHHHHHH
Q 006955 544 -YLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 544 -~~~l~~~~~~~g~~~~A~~~ 563 (624)
...++.++ ..|+.+.+.++
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHHH
Confidence 44555555 56777766663
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=82.41 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=92.6
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+.| ....+......|.+.|++++|++.|++.++.. +.++..|..+..++...|++++|+..++++++++|.++..|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 556 35667788999999999999999999988742 3468899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|.+.|++..+..
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=86.74 Aligned_cols=156 Identities=12% Similarity=-0.051 Sum_probs=120.7
Q ss_pred hHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-hcc
Q 006955 373 SNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA-CSY 448 (624)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 448 (624)
...+...+.+.|++++|+..|++.. +.+...+..+...+...|++++|+..+++..+. .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 4456778889999999999999988 456778899999999999999999999998763 4443332222111 112
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC---HHHHHHHHHHHHhcCChH
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS---PTVWGALLGACRIHNNIK 524 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~ 524 (624)
.+....|...+++..+ ..| ++..+..+..++...|++++|+..++++.+. .|+ +..+..+..++...|+.+
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCCC
Confidence 2222346888888877 346 6888999999999999999999999998874 454 558889999999999999
Q ss_pred HHHHHHHHHHc
Q 006955 525 VGEIAGERVME 535 (624)
Q Consensus 525 ~a~~~~~~~~~ 535 (624)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=103.45 Aligned_cols=146 Identities=9% Similarity=-0.079 Sum_probs=74.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHH
Q 006955 349 PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFE 425 (624)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (624)
|++++|...++++.+.. +.+...+..+...|...|++++|++.+++.. +.+...|..+..+|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45556666666555432 2234455556666666666666666665544 2234455566666666666666666666
Q ss_pred HHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc---CChHHHHHHHHHccc
Q 006955 426 RMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF---GLIDEAMNLLNEIRA 500 (624)
Q Consensus 426 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 500 (624)
+..+. .|+ ...+..+..++...|++++|.+.++++.+. .| +...+..+...+... |+.++|.+.+++..+
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 66553 333 345555556666666666666666666553 23 455555666666666 666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-08 Score=85.39 Aligned_cols=122 Identities=7% Similarity=0.020 Sum_probs=95.9
Q ss_pred hcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH-HHhcCCh
Q 006955 446 CSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA-CRIHNNI 523 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~ 523 (624)
+...|++++|...+++..+. .| +...+..+...|...|++++|+..++++.+.. +.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 45667888888888887764 34 67788888888889999999999998887632 2356677778777 7788888
Q ss_pred --HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 524 --KVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 524 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++|...++++++..|.++..+..++.+|...|++++|...+++..+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999888889999999999999999999998887764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-08 Score=81.59 Aligned_cols=103 Identities=11% Similarity=-0.024 Sum_probs=88.9
Q ss_pred CCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 468 LQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+.| +...+..+...+.+.|++++|+..|++..... +.++..|..+..++...|++++|...++++++++|.++..+..
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 445 45666778888899999999999999988742 3467888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|.+.+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.5e-08 Score=86.10 Aligned_cols=131 Identities=13% Similarity=-0.032 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL 481 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 481 (624)
.+..+...+...|++++|...+++. +.|+...+..+..++...|++++|...+++..+. .| +...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 3556677788889999999888876 3667778888888888889999999988888874 34 67778888888
Q ss_pred hhccCChHHHHHHHHHcccCC--------------CCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 482 LGRFGLIDEAMNLLNEIRADG--------------IEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g--------------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
|...|++++|++.++++.+.. ..| ....+..+..++...|++++|...++++++..|.+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888899999998888877642 111 12677778888888889999999988888888854
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.4e-08 Score=102.88 Aligned_cols=189 Identities=11% Similarity=-0.012 Sum_probs=146.4
Q ss_pred cCCCCcHHHHHHHHHHHH-------hCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcC
Q 006955 346 SDLPTLDLGRQIHAQAIK-------IARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHG 415 (624)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 415 (624)
...|++++|...++.+.+ ...+.+...+..+...|...|++++|+..|+++. +.+...|..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 677888888888888771 1224456677788889999999999999998877 457778999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHH
Q 006955 416 YAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
++++|+..|++..+ ..|+ ...+..+..++...|++++ .+.++++.+. .| +...|..+..+|.+.|++++|++
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 4564 4678888889999999999 9999999873 46 67889999999999999999999
Q ss_pred HHHHcccCCCCcC-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHHccCCCCCc
Q 006955 494 LLNEIRADGIEVS-PTVWGALLGACRIHNN-----IKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 494 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 542 (624)
.|+++.+ +.|+ ...+..+..++...|+ .+...+..+...+..+.++.
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9999987 5675 5677777777766555 23334444444445454444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-07 Score=86.72 Aligned_cols=164 Identities=8% Similarity=-0.028 Sum_probs=125.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHH
Q 006955 406 SIICGLAYHGYAEKALELFERMRLTD-FKPDDI----TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYT 476 (624)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 476 (624)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667889999999999999988742 122211 2334666777888999999999999873211223 23688
Q ss_pred HHHHHhhccCChHHHHHHHHHccc----C-CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRA----D-GIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN------SGVY 544 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 544 (624)
.+..+|...|++++|+..++++.+ . +..+. ..++..+..+|...|++++|...+++++++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999873 1 12332 3478889999999999999999999999865432 5679
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHH
Q 006955 545 LILTEMYLSCGR-REDAKRIFAQMKE 569 (624)
Q Consensus 545 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 569 (624)
..++.+|...|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-08 Score=93.81 Aligned_cols=174 Identities=9% Similarity=-0.005 Sum_probs=129.4
Q ss_pred hCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC-C-hhhHHHHHHHhcccChHHHHHH
Q 006955 383 CGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDF---KP-D-DITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p-~-~~~~~~ll~~~~~~g~~~~a~~ 457 (624)
.++++.|...|+ .....|...|++++|...+.+..+... .+ . ..++..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 356666666543 345667778888888888877655211 11 1 2467778888999999999999
Q ss_pred HHHHhhhhcCC--CC--CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHH
Q 006955 458 YFDCMKNKYFL--QP--RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEI 528 (624)
Q Consensus 458 ~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~ 528 (624)
.+++..+...- .| ...++..+..+|.. |++++|++.+++..+. |..+ ...++..+...+...|++++|..
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987763210 11 24567888999988 9999999999987652 1111 14578888899999999999999
Q ss_pred HHHHHHccCCCCC------chHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 529 AGERVMELEPNNS------GVYLILTEMYLSCGRREDAKRIFAQMK 568 (624)
Q Consensus 529 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 568 (624)
.+++++++.|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999776543 267778888889999999999999887
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.1e-08 Score=90.32 Aligned_cols=132 Identities=8% Similarity=-0.024 Sum_probs=113.8
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
+...+..+...+...|++++|...++++.+. .| +...+..+...|.+.|++++|...++++.. ..|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHH
Confidence 3456677778889999999999999999884 46 678899999999999999999999999987 46776544433
Q ss_pred HH-HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 514 LG-ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 514 ~~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.. .+...++.+.|...++++++..|.++..+..++.+|...|++++|...+.++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 33 36778889999999999999999999999999999999999999999999998864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.6e-08 Score=82.05 Aligned_cols=128 Identities=9% Similarity=-0.058 Sum_probs=103.4
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+..+...+...|++++|...+++..+. .| +...+..+..++...|++++|++.+++..+.. +.++..+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4555666677788888888888887763 34 67778888888999999999999999887742 3457788888899
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhcCChHHHHHHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM--YLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 569 (624)
+...|++++|...++++++..|.++..+..+..+ +...|++++|.+.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999888887555554 8888999999999887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-07 Score=83.96 Aligned_cols=159 Identities=11% Similarity=-0.019 Sum_probs=99.6
Q ss_pred HHHhHhhCCHHHHHHHhccCC--CCC----chhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHh
Q 006955 377 ITMYARCGNIQSALLEFSSVP--IHD----IISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDI----TFVGVLSAC 446 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~ 446 (624)
...+.+.|++++|+..|+++. .|+ ...+..+..+|...|++++|+..|+++.+. .|+.. .+..+..++
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHH
Confidence 344445555555555555443 121 123444555555666666666666665552 23221 222222222
Q ss_pred ------------------cccChHHHHHHHHHHhhhhcCCCCC-cchH-----------------HHHHHHhhccCChHH
Q 006955 447 ------------------SYAGLVDQGRYYFDCMKNKYFLQPR-SAHY-----------------TCVVDLLGRFGLIDE 490 (624)
Q Consensus 447 ------------------~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~ 490 (624)
...|+.++|...|+++.+. .|+ ...+ ..+...|.+.|++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 2356788888888887764 253 2222 245677889999999
Q ss_pred HHHHHHHcccCCCCcC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 491 AMNLLNEIRADGIEVS-P---TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
|+..|+++++. .|+ + ..+..+..++...|+.++|...++++....|.+..
T Consensus 166 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 166 VVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 99999998873 443 2 46788889999999999999999999988886543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-07 Score=87.01 Aligned_cols=167 Identities=7% Similarity=-0.043 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 473 (624)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3455667788899999999999888774322111 12334555677889999999999988753211112 34
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC----CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------CC
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN------NS 541 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 541 (624)
+++.+...|...|++++|+..++++.+. +..+ ...++..+..+|...|++++|...+++++++.+. -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999987621 1111 1258888999999999999999999999986532 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDA-KRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 569 (624)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.7e-08 Score=78.09 Aligned_cols=116 Identities=8% Similarity=-0.029 Sum_probs=80.9
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
..+..+...+...|++++|...++++.+. .| +...+..+...|...|++++|++.++++.+.. +.+...+..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555555666666666666666666552 24 55666777777777777777777777766532 335667777777
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 556 (624)
++...|++++|...++++++..|.++..+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 78888888888888888888888777778888777776653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=74.45 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=86.3
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CCchHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN--NSGVYLILT 548 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 548 (624)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++..|. ++..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 56677788888899999999999999887642 345778888888899999999999999999999998 888999999
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCC
Q 006955 549 EMYLSC-GRREDAKRIFAQMKENG 571 (624)
Q Consensus 549 ~~~~~~-g~~~~A~~~~~~m~~~~ 571 (624)
.+|... |++++|.+.+++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999999887665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-06 Score=80.43 Aligned_cols=219 Identities=14% Similarity=0.138 Sum_probs=101.7
Q ss_pred cCCCc-hHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCC--CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHH
Q 006955 312 ENDLG-EEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLP--TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQ 387 (624)
Q Consensus 312 ~~~~~-~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (624)
+.|.+ ++|+.++..++.. .|+. ..++.--..+...+ +++++...+..+.....+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-------------------- 101 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-------------------- 101 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc--------------------
Confidence 33433 4677777777664 4443 33444444444455 566666666665554322
Q ss_pred HHHHHhccCCCCCchhHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH--HHHHH
Q 006955 388 SALLEFSSVPIHDIISWNSIICGL----AYH---GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD--QGRYY 458 (624)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~ 458 (624)
+..+|+.-...+ ... +++++++.+++++.+.. +-|..+|+.-...+...|.++ ++.+.
T Consensus 102 ------------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 102 ------------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 223333322222 222 44455555555555421 122334443333333444444 55555
Q ss_pred HHHhhhhcCCCC-CcchHHHHHHHhhccCC------hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHH
Q 006955 459 FDCMKNKYFLQP-RSAHYTCVVDLLGRFGL------IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI-KVGEIAG 530 (624)
Q Consensus 459 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~ 530 (624)
++++.+. .| |-..|+.-..++...|+ ++++++.+++++... +-|...|+.+...+...|.. +....++
T Consensus 169 ~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 169 VDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 5555542 23 44444444444444443 455555555544421 22444555554444444432 2233444
Q ss_pred HHHHccC---CCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 531 ERVMELE---PNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 531 ~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+++.++. |.++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4444443 44455555555555555555555555555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.7e-07 Score=78.67 Aligned_cols=160 Identities=7% Similarity=-0.201 Sum_probs=117.6
Q ss_pred cchhHHHHHHhHhhCCHHHHHHHhccCC-CCCchhHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006955 370 TTVSNAMITMYARCGNIQSALLEFSSVP-IHDIISWNSIICGLAYHG----YAEKALELFERMRLTDFKPDDITFVGVLS 444 (624)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 444 (624)
+..+..+...|...+++++|+..|++.. ..++..+..+...|.. + ++++|..+|++..+.| +...+..+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3344445566666666777766666655 3355667777777766 5 8899999999988754 4566667777
Q ss_pred Hhcc----cChHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 445 ACSY----AGLVDQGRYYFDCMKNKYFLQPR---SAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 445 ~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
.|.. .+++++|..++++..+. .|+ +..+..|...|.. .+++++|+++|++..+. ..++..+..|
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 7766 78999999999998863 342 6788888888887 78999999999998874 3445567777
Q ss_pred HHHHHhc-C-----ChHHHHHHHHHHHccCC
Q 006955 514 LGACRIH-N-----NIKVGEIAGERVMELEP 538 (624)
Q Consensus 514 ~~~~~~~-g-----~~~~a~~~~~~~~~~~p 538 (624)
...|... | +.++|...++++.+...
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7777543 3 89999999999988764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-07 Score=74.94 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=87.5
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 455666667777777777777777776631 2256677778888888888888888888877642 3456778888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888889999999999888888888888888887776554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.7e-07 Score=80.27 Aligned_cols=123 Identities=13% Similarity=-0.060 Sum_probs=86.7
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH
Q 006955 374 NAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD 453 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 453 (624)
..+...+...|++++|+..|++...++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3456667777777777777777776677777777777777777777777777777642 223456666777777777777
Q ss_pred HHHHHHHHhhhhcCCCC-Cc----------------chHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 454 QGRYYFDCMKNKYFLQP-RS----------------AHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
+|...++++.+. .| +. ..+..+..+|...|++++|.+.++++.+
T Consensus 89 ~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ---LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT---TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777763 23 22 5666777777777777777777777766
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=3e-08 Score=92.97 Aligned_cols=187 Identities=9% Similarity=-0.077 Sum_probs=125.2
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhc
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACS 447 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 447 (624)
.+..+...+.+.|++++|+..|++.. +.+...|..+..+|...|++++|+..+++..+. .|+ ...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34455666777777777777777655 336677888888888999999999999888873 454 457777888888
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
..|++++|...++++.+. .| +...+...+....+.......... .. ...++++.....+... ..|+.++|
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNSI-EE---RRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHHH-HH---TCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHHH-HH---HHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 899999999999888763 34 222222233322222211111111 11 1234444444444332 36899999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSC-GRREDAKRIFAQMKE 569 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 569 (624)
...++++.+..|.+......+...+... +++++|.++|.+..+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998777777777777766 778899999987755
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=76.07 Aligned_cols=117 Identities=10% Similarity=0.010 Sum_probs=93.7
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLG 515 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (624)
..+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.+++..+.. +.++..+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45556666777778888888888877764 24 66777888888888899999999988877642 335778888888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 516 ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
++...|++++|...++++.+..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 899999999999999999999998888899999988888875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=91.62 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=117.3
Q ss_pred CCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+++++|+..++... +.+...|..+...|...|++++|+..|++..+. .|+...+ .. +.+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~~--~~~~~--- 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SN--EEAQK--- 190 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CS--HHHHH---
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC---------Ch--HHHHH---
Confidence 44445555554443 123456667777777777777777777777763 3332110 00 11110
Q ss_pred HhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 461 CMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 461 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+.| ....|..+..+|.+.|++++|+..++++++.. +.++..|..+..++...|++++|...+++++++.|.
T Consensus 191 -------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 191 -------AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred -------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 011 25678889999999999999999999988742 336789999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHH-HHHHHHHH
Q 006955 540 NSGVYLILTEMYLSCGRREDA-KRIFAQMK 568 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 568 (624)
++.++..++.++...|++++| ...++.|.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 44666664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=76.13 Aligned_cols=99 Identities=8% Similarity=-0.013 Sum_probs=81.0
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...+..+...+.+.|++++|+..|++..+.. +.++..|..+..++...|++++|...++++++++|.++..+..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456667778888888888888888877632 335778888888888889999999999999999998888899999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999888876653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=78.12 Aligned_cols=104 Identities=9% Similarity=-0.077 Sum_probs=89.0
Q ss_pred CCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHH
Q 006955 432 FKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPT 508 (624)
Q Consensus 432 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~ 508 (624)
+.|+. ..+..+...+.+.|++++|...|+++.+ +.| ++..|..+..+|...|++++|+..|+++.+ +.| ++.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~ 105 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYT 105 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcH
Confidence 44544 4667777888999999999999999987 456 788899999999999999999999999887 455 577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.|..+..++...|++++|...|++++++.|++
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 88999999999999999999999999999854
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.3e-06 Score=77.06 Aligned_cols=239 Identities=11% Similarity=0.054 Sum_probs=164.5
Q ss_pred HHHHhcCC-hHHHHHHHhhcCCC---CceehhhhhhHhhcCC--CchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCC
Q 006955 277 VGYFEMGE-VGSAIKVFELMTTR---DVTVWNVMIFGLGEND--LGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLP 349 (624)
Q Consensus 277 ~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~ 349 (624)
.+..+.|. .++|+.+++.+..- +..+|+.--..+...+ ++++++..++.+.... |.. ..++.--..+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL---- 113 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLII---- 113 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHH----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHH----
Confidence 33445555 46899999888643 4456777777777777 9999999999998763 332 2332211111
Q ss_pred CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChH--HHHHHH
Q 006955 350 TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAE--KALELF 424 (624)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~a~~~~ 424 (624)
..+ +......+++++++.+++++. +.+..+|+.-...+...|.++ ++++.+
T Consensus 114 ---------~~~---------------~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 114 ---------GQI---------------MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ---------HHH---------------HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ---------HHH---------------HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 000 000000134555555555554 446677887777778888888 999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHhcccCh------HHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHH-HHHHHH
Q 006955 425 ERMRLTDFKPDDITFVGVLSACSYAGL------VDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDE-AMNLLN 496 (624)
Q Consensus 425 ~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~ 496 (624)
+++.+.. .-|...|+.-...+...|. ++++++.++++... .| |...|+.+...+.+.|+... +..+..
T Consensus 170 ~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 170 DKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999853 3344567655555556565 88999999998874 46 88899999888888887544 566777
Q ss_pred HcccCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCCchHHHHHH
Q 006955 497 EIRADG--IEVSPTVWGALLGACRIHNNIKVGEIAGERVME-LEPNNSGVYLILTE 549 (624)
Q Consensus 497 ~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 549 (624)
++.+.+ -..++..+..+..++...|+.++|.++++.+.+ .+|.....+...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 777632 134678899999999999999999999999996 79977666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=79.26 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=92.2
Q ss_pred HHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC
Q 006955 424 FERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD 501 (624)
Q Consensus 424 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (624)
++++.. +.|+. ..+..+...+...|++++|...|+++... .| ++..|..+..+|...|++++|++.|+++.+
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 83 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV- 83 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 444443 34543 45666777888899999999999988874 46 778888899999999999999999999887
Q ss_pred CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 502 GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 502 g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
+.| ++..+..+..++...|++++|...+++++++.|.++....
T Consensus 84 -l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 84 -MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp -HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred -cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 345 5778888899999999999999999999999997776543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=75.03 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=84.4
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..+..+...+.+.|++++|+..+++.++ ..| ++..|..+..++...|++++|+..++++++++|.++..+..++.+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455677788899999999999999887 345 6778888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-07 Score=80.90 Aligned_cols=156 Identities=8% Similarity=-0.057 Sum_probs=90.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCC-CcchHHHHHHHhhccCCh
Q 006955 413 YHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQP-RSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~ 488 (624)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666643333221 11123455555556666666666666666555421 1112 345566677777777777
Q ss_pred HHHHHHHHHcccC----CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CC----chHHHHHHHHHhcCC
Q 006955 489 DEAMNLLNEIRAD----GIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN--NS----GVYLILTEMYLSCGR 556 (624)
Q Consensus 489 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~ 556 (624)
++|.+.+++..+. +-.| ....+..+...+...|++++|...++++++..+. ++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777765542 1111 1335666667777788888888888877764321 21 235677888888888
Q ss_pred hHHHHHHHHHHHH
Q 006955 557 REDAKRIFAQMKE 569 (624)
Q Consensus 557 ~~~A~~~~~~m~~ 569 (624)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-07 Score=73.99 Aligned_cols=100 Identities=9% Similarity=-0.050 Sum_probs=87.1
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|+..+++..+.. +.++..|..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 57778888889999999999999999887742 33577888888899999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-06 Score=87.05 Aligned_cols=354 Identities=8% Similarity=-0.056 Sum_probs=172.4
Q ss_pred HcC-ChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC--CCcchHHHHHHHHHhcCC-hHHHHHHHhh
Q 006955 188 DNG-CVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE--TCEKTWNSIISVLIRNGL-VKEAHSYLEK 263 (624)
Q Consensus 188 ~~g-~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~ 263 (624)
+.| +++.|..+|+.+...=+ .|+++.+..+|+.... |+...|...+....+.++ .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P------------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYM------------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHHHHHH------------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCC------------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 345 37777777777654111 1889999999999886 777788888777766653 3444555555
Q ss_pred cC------CCCcchhhHHHHHHH----hcCChHHHHHHHhhcCCCCceehhhhhhHhhc---C--------------CCc
Q 006955 264 YP------YSNIASWTNVIVGYF----EMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE---N--------------DLG 316 (624)
Q Consensus 264 ~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~--------------~~~ 316 (624)
+. +.+...|...+..+. ..++++.+.++|++...--...+..+-..|.. . +.+
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 44 334566777666544 24567788888887754211111122111111 0 111
Q ss_pred hHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCC--CC-----cHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH
Q 006955 317 EEGLKFFVQMKESGPSPDNATFTSVLTICSDL--PT-----LDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389 (624)
Q Consensus 317 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (624)
..|..+++++...--..+...|...+.--... +- .+.+..+++.++... +....++-..+..+.+.|+++.|
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 22233333322110001122232222221111 11 123445566555532 33344555555556666666666
Q ss_pred HHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---hhhHHHHHHHhcccChHHHH
Q 006955 390 LLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTD---------FKPD---DITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 390 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~p~---~~~~~~ll~~~~~~g~~~~a 455 (624)
..++++.. +.+...|. .|+...+.++. ++.+.+.- ..+. ...|...+....+.++.+.|
T Consensus 233 r~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 233 KKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 66665443 11222221 12221111111 22222110 0011 12344444444455667777
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHhhccC-ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG-LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
+.+|+++ +.. .++...|...+..-...+ +.+.|.++|+...+. .+-++..|...+.-....|+.+.|..+++++
T Consensus 306 R~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~- 380 (493)
T 2uy1_A 306 RKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL- 380 (493)
T ss_dssp HHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-
T ss_pred HHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 7777776 321 112233332222222223 577777777776653 2223445555565556677777777777776
Q ss_pred ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 535 ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 535 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
+.....+...+..-...|+.+.+.++++++..
T Consensus 381 ---~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 ---EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22344566666656666777777777777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.52 E-value=6.2e-06 Score=83.52 Aligned_cols=201 Identities=9% Similarity=-0.034 Sum_probs=127.5
Q ss_pred HHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH-HHHhccC
Q 006955 318 EGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA-LLEFSSV 396 (624)
Q Consensus 318 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 396 (624)
.+..+|+++.... +.+...|...+.-+...|+++.|..++...... |.+...+. .|+...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 4566777766542 334555555555666677777888888777776 33332222 12221111111 1111111
Q ss_pred C------------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh-cccChHHHHHHHHHHhh
Q 006955 397 P------------IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC-SYAGLVDQGRYYFDCMK 463 (624)
Q Consensus 397 ~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~ 463 (624)
. ......|...+..+.+.++.+.|..+|++. .. ..++...|......- ...++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 111245777777777788899999999999 32 122333443222211 12346999999999999
Q ss_pred hhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 464 NKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 464 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.. | ++..+...++.....|+.+.|..+|+++.. ....|...+.--...|+.+.+..++++..+
T Consensus 348 ~~~---~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKH---PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 864 4 455667788888899999999999999842 467888888777788999999999988885
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4e-07 Score=77.44 Aligned_cols=107 Identities=12% Similarity=-0.046 Sum_probs=84.8
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALL 514 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 514 (624)
..+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..+++.++. .| +...|..+.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 46667777888888888888888888874 35 6777888888888888888888888888773 44 477888888
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
.++...|++++|...+++++++.|.++..+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 8888888888888888888888888877655444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.6e-07 Score=73.10 Aligned_cols=97 Identities=6% Similarity=-0.055 Sum_probs=82.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-------h
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG-------V 543 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~ 543 (624)
...+..+...+.+.|++++|++.|++.++ +.| ++..|..+..+|...|++++|+..+++++++.|.++. +
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34566788899999999999999999887 455 5778889999999999999999999999998886654 5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 544 YLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|..++.+|...|++++|++.+++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777888899999999999999987764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-07 Score=77.77 Aligned_cols=128 Identities=9% Similarity=0.011 Sum_probs=100.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH-hhccCCh-
Q 006955 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL-LGRFGLI- 488 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 488 (624)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34677888888888887742 334567888888889999999999999998874 35 67778888888 7788998
Q ss_pred -HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 489 -DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 489 -~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
++|.+.++++.+.. +.++..+..+..++...|++++|...++++++..|.++...
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999988742 33577888899999999999999999999999999776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-07 Score=75.77 Aligned_cols=106 Identities=9% Similarity=-0.049 Sum_probs=84.3
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+..+...+...|++++|...|+++... .| +...|..+..+|.+.|++++|+..+++..+.. +.++..+..+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 4555666777888888888888888773 45 67778888889999999999999999988742 3356778888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+...|++++|...+++++++.|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8999999999999999999998777665444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.3e-07 Score=72.10 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=90.5
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 46678889999999999999999999988742 33678899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999987753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.5e-07 Score=70.18 Aligned_cols=109 Identities=13% Similarity=0.011 Sum_probs=60.7
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGA 516 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (624)
.+..+...+...|++++|...+++.... .| +...+..+...+...|++++|...+++..+.. +.++..+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3344444555555555555555555542 23 45555555666666666666666666655421 2235555566666
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...|++++|...++++.+..|.++..+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6666666666666666666666555555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-06 Score=78.27 Aligned_cols=161 Identities=7% Similarity=-0.106 Sum_probs=121.0
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCC---Cc------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVPIH---DI------ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-----ITFVG 441 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ 441 (624)
.+..+...|++++|...+++.... ++ ..+..+...+...+++++|+..+++..+.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999998876521 11 12334666677778999999999999884332222 26888
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhc----CCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccC----CCCcC-HHHHH
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKY----FLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEVS-PTVWG 511 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 511 (624)
+..+|...|++++|..+++++.+.. +..| ...++..+...|.+.|++++|++.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999988521 1112 2457888999999999999999999987642 22222 56888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHcc
Q 006955 512 ALLGACRIHNN-IKVGEIAGERVMEL 536 (624)
Q Consensus 512 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 536 (624)
.+..++...|+ +++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999999873
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.8e-07 Score=72.47 Aligned_cols=109 Identities=7% Similarity=-0.089 Sum_probs=84.2
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLG 515 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 515 (624)
.+......+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++..+. .| ++..|..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4555566677778888888888887763 35 6777888888888888888888888888773 44 5778888888
Q ss_pred HHHhcCChHHHHHHHHHHHccC------CCCCchHHHHHHHH
Q 006955 516 ACRIHNNIKVGEIAGERVMELE------PNNSGVYLILTEMY 551 (624)
Q Consensus 516 ~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 551 (624)
++...|++++|...+++++++. |.++.....+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888999999999999999888 76666666665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=5e-07 Score=79.61 Aligned_cols=171 Identities=7% Similarity=-0.092 Sum_probs=106.8
Q ss_pred HhHhhCCHHHHHHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHH
Q 006955 379 MYARCGNIQSALLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 455 (624)
.....|+++.+.+.++.... .....+..+...+...|++++|+..|++..+. .|+...+... ....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~- 81 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD- 81 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH-
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH-
Confidence 34445555666555554331 13345666667777777888888877777763 3332111000 0000
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 456 RYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 456 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
-... .....+..+..+|...|++++|+..+++..+.. +.++..+..+..++...|++++|...++++++
T Consensus 82 ------~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 ------KKKN----IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ------HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0000 013567788889999999999999999988742 34677888999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChHHHH-HHHHHHHHCC
Q 006955 536 LEPNNSGVYLILTEMYLSCGRREDAK-RIFAQMKENG 571 (624)
Q Consensus 536 ~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 571 (624)
+.|.++.++..+..++...|+.+++. ..+..|...+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988888777 5566555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=8e-07 Score=70.34 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=88.7
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...+..++..+...|++++|.+.+++..+.. +.++..+..+..++...|++++|...++++.+..|.++..+..++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567778889999999999999999988742 346788899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.6e-07 Score=81.21 Aligned_cols=124 Identities=7% Similarity=-0.092 Sum_probs=75.2
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCH----HHHHHHHHHH
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSP----TVWGALLGAC 517 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~ 517 (624)
+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+.... .|++ ..+..+..++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHHHHHHHHHHHH
Confidence 344556667777777777666542 24222444555566677777777777765543 2222 2455566666
Q ss_pred HhcCChHHHHHHHHHHHccC--CC-CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 518 RIHNNIKVGEIAGERVMELE--PN-NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 518 ~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.+..
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777776432 32 33456667777777777777777777776653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=70.51 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=89.5
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5677888999999999999999999988742 346778899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 006955 552 LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~~~~ 571 (624)
...|++++|...++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999987753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=74.77 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=45.4
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
..+..+...+.+.|++++|++.|++.++. .| ++..|..+..++...|++++|+..++++++++|.++..+..++.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33444444444555555555555544432 22 3444444444445555555555555555555554444555555555
Q ss_pred HhcCChHHHHHHHHHHH
Q 006955 552 LSCGRREDAKRIFAQMK 568 (624)
Q Consensus 552 ~~~g~~~~A~~~~~~m~ 568 (624)
...|++++|.+.+++..
T Consensus 90 ~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 55555555555444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-06 Score=80.50 Aligned_cols=163 Identities=7% Similarity=-0.114 Sum_probs=120.2
Q ss_pred HHHHHHhHhhCCHHHHHHHhccCC---CCCc------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hhhH
Q 006955 374 NAMITMYARCGNIQSALLEFSSVP---IHDI------ISWNSIICGLAYHGYAEKALELFERMRLTDFK---PD--DITF 439 (624)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~---p~--~~~~ 439 (624)
...+..+...|++++|.+.+++.. +... ..+..+...+...|++++|+..+++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 345677888899999988886543 1111 22344556677889999999999998763211 11 2477
Q ss_pred HHHHHHhcccChHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHhhccCChHHHHHHHHHcccCC----CCc-CHHH
Q 006955 440 VGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADG----IEV-SPTV 509 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~ 509 (624)
+.+...|...|++++|...++++.+.....|+ ..++..+...|...|++++|++.+++..+.. ... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888999999999999999998732111232 2578889999999999999999999876521 111 1668
Q ss_pred HHHHHHHHHhcCChHHH-HHHHHHHHcc
Q 006955 510 WGALLGACRIHNNIKVG-EIAGERVMEL 536 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 536 (624)
+..+..++...|++++| ...++++..+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88899999999999999 8889988763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-07 Score=72.33 Aligned_cols=101 Identities=9% Similarity=0.008 Sum_probs=61.6
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--------HHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--------PTV 509 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~ 509 (624)
+..+...+.+.|++++|+..|+++.+ +.| +...|..+..+|...|++++|++.+++.++ +.|+ ..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHH
Confidence 34455555666666666666666655 234 455566666666666666666666666554 2221 124
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHH
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYL 545 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 545 (624)
|..+..++...|++++|+..|+++++..| ++....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 55566667777788888888887777776 444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=71.12 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=61.3
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---CchHHHHHH
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVS-P---TVWGALLGACRIHNNIKVGEIAGERVMELEPNN---SGVYLILTE 549 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 549 (624)
.+...+...|++++|.+.++++.+. .|+ + ..+..+..++...|++++|...++++++..|.+ +..+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3455566677777777777766552 232 2 355666666777777777777777777777766 555777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 006955 550 MYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 550 ~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+|...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=71.25 Aligned_cols=109 Identities=10% Similarity=-0.054 Sum_probs=59.7
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
.+..+...+...|++++|...+++..+ ..|+ ...+..+...|...|++++|++.+++..+.. +.++..+..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 334444444555555555555555443 2233 3445555556666666666666666655421 2245555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
..++...|++++|...++++++..|.++..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 6666666666666666666666666555555554444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-06 Score=73.18 Aligned_cols=97 Identities=9% Similarity=0.058 Sum_probs=74.7
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC--------C--------CCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD--------G--------IEV-SPTVWGALLGACRIHNNIKVGEIAGERVMEL 536 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 536 (624)
.+......+.+.|++++|+..|.+.++. . ..| +...|..+..++...|++++|...+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445556666667777777666665542 0 022 2457778888888999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 537 EPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 537 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+|.++..|..++.+|...|++++|...+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888775
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-06 Score=71.56 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=90.1
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLI 546 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 546 (624)
+...+..+...+...|++++|++.+++..+ ..|+ ...+..+..++...|++++|...++++++..|.++..+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 566788889999999999999999999887 4566 6788888899999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 547 LTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 547 l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.+|...|++++|...+++..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999987753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-07 Score=72.74 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=57.7
Q ss_pred cCChHHHHHHHHHcccCCC-Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006955 485 FGLIDEAMNLLNEIRADGI-EV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 562 (624)
.|++++|+..|++.++.+. .| ++..+..+..++...|++++|...++++++..|.++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777766321 13 345666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHC
Q 006955 563 IFAQMKEN 570 (624)
Q Consensus 563 ~~~~m~~~ 570 (624)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=70.38 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=90.1
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|.+.+++..... +.++..+..+..++...|++++|...++++.+..|.++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 56677888999999999999999999988742 34678888999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|++++|.+.+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999987763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=71.47 Aligned_cols=101 Identities=8% Similarity=-0.107 Sum_probs=79.4
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGAL 513 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (624)
+...+..+...+...|++++|...+++..+. .| +...+..+..+|...|++++|+..+++..+.. +.++..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4456677777778888888888888887764 34 56778888888888888888888888887642 3357788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 514 LGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 514 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
..++...|++++|...++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888889999999999999888876
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=71.49 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=70.0
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHcc-------C
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVS-------------PTVWGALLGACRIHNNIKVGEIAGERVMEL-------E 537 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 537 (624)
....+...|++++|+..|++.++ +.|+ ...|..+..++...|++++|+..+++++++ +
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444455555555555555443 2232 338888888889999999999999999998 9
Q ss_pred CCCCchH----HHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 538 PNNSGVY----LILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 538 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|+++..| ...+.++...|++++|+..|++..+.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998899 99999999999999999999988765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=77.48 Aligned_cols=139 Identities=14% Similarity=-0.037 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC--cchHHHHHHH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR--SAHYTCVVDL 481 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 481 (624)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 344566778889999999999888763 455544445555788899999999999866542 1121 2367778889
Q ss_pred hhccCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLIL 547 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 547 (624)
+...|++++|+..|++.......|. +..+.....++...|+.++|...|+++...+|. +.....|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9999999999999999875333253 346677777888999999999999999999995 5545444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-06 Score=70.96 Aligned_cols=129 Identities=6% Similarity=-0.122 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVD 480 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 480 (624)
..|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 357777888899999999999999988742 334567888888899999999999999998874 35 6778889999
Q ss_pred HhhccCChHHHHHHHHHcccCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHc
Q 006955 481 LLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALL--GACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~ 535 (624)
++...|++++|.+.++++.+.. +.+...+..+. ..+...|++++|...+++...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999988742 22455554333 347788999999999888765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=8.5e-07 Score=78.14 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=89.4
Q ss_pred cccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----------------HHHH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----------------PTVW 510 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~ 510 (624)
...|+++.+.+.++..... .......+..+...+...|++++|++.|++..+.. +.+ ...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHH
Confidence 3345555555554432221 01134556677778888888888888888877631 112 2678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..+..++...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999998775
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=9.2e-07 Score=89.45 Aligned_cols=119 Identities=9% Similarity=-0.056 Sum_probs=100.0
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH 520 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 520 (624)
...+.+.|++++|.+.++++.+. .| +...|..+..+|.+.|++++|++.+++..+. .| ++..+..+..++...
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34567789999999999998874 46 6888999999999999999999999998874 45 577899999999999
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEM--YLSCGRREDAKRIFAQ 566 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 566 (624)
|++++|...++++++..|.++..+..++.+ +...|++++|.+.+++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999888 8889999999999873
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.31 E-value=4e-06 Score=65.43 Aligned_cols=101 Identities=19% Similarity=0.065 Sum_probs=78.3
Q ss_pred hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc--CHHHHHHH
Q 006955 437 ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV--SPTVWGAL 513 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l 513 (624)
..+..+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45566666777788888888888887764 24 56677788888888889999998888887642 23 47788888
Q ss_pred HHHHHhc-CChHHHHHHHHHHHccCCCCC
Q 006955 514 LGACRIH-NNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 514 ~~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 541 (624)
..++... |++++|...++++.+..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 999999999999988888654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=75.76 Aligned_cols=156 Identities=14% Similarity=0.015 Sum_probs=109.9
Q ss_pred hhCCHHHHHH---HhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhcccChHH
Q 006955 382 RCGNIQSALL---EFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLT----DFKPD-DITFVGVLSACSYAGLVD 453 (624)
Q Consensus 382 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~ 453 (624)
..|++++|.+ .+.........++..+...+...|++++|...+++..+. |..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777776 554433334567788888888999999999999887652 22222 246677777888999999
Q ss_pred HHHHHHHHhhhhcCCCC-C----cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCCh
Q 006955 454 QGRYYFDCMKNKYFLQP-R----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~ 523 (624)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++..+. +..+ ...++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99999988776421122 2 345778888999999999999999887642 2111 123567788889999999
Q ss_pred HHHHHHHHHHHccC
Q 006955 524 KVGEIAGERVMELE 537 (624)
Q Consensus 524 ~~a~~~~~~~~~~~ 537 (624)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=68.50 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=72.0
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGA 516 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 516 (624)
+..+...+.+.|++++|...++++.+. .| +...|..+..++...|++++|+..+++..+ +.| ++..+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 444555677778888888888887763 45 677778888888888888888888888777 445 56677888888
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCC
Q 006955 517 CRIHNNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 517 ~~~~g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+...|++++|...++++++..|.++
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888888543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=69.21 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=83.9
Q ss_pred cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------CchH
Q 006955 472 SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN-------SGVY 544 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~ 544 (624)
...+..+...+...|++++|...+++..+.. +.++..+..+...+...|++++|...++++.+..|.+ +.++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456778888888999999999999887642 3467788888888999999999999999999987765 7789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 545 LILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..++.+|...|++++|.+.+++..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999887753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=84.72 Aligned_cols=163 Identities=10% Similarity=0.015 Sum_probs=110.9
Q ss_pred CCHHHHHHHhccCCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHH
Q 006955 384 GNIQSALLEFSSVPI---HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFD 460 (624)
Q Consensus 384 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (624)
+++++|+..|+.... .....|..+...+.+.|++++|+..|++..+. .|+...+ .+ +...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~~-~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------SE-KESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------CH-HHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------Ch-HHHH----
Confidence 344445544444331 13345666667777777777777777777662 3332110 00 0000
Q ss_pred HhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 461 CMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 461 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
+... -....|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++++|.+
T Consensus 311 ~~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 311 ASES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 0000 125678889999999999999999999988742 3367889999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 006955 541 SGVYLILTEMYLSCGRREDAKR-IFAQMKE 569 (624)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 569 (624)
..++..++.++...|+++++.+ .+..|..
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998875 5555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=5.6e-06 Score=79.58 Aligned_cols=142 Identities=8% Similarity=-0.020 Sum_probs=82.7
Q ss_pred CcchhHHHHHHhHhhCCHHHHHHHhccCC--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 006955 369 FTTVSNAMITMYARCGNIQSALLEFSSVP--IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSAC 446 (624)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 446 (624)
+...+..+...|.+.|++++|+..|++.. .|+...+ ..+.+..+ ..+ ....+..+..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~-~~~-------~~~~~~nla~~~ 206 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA-QAL-------RLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-HHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-HHH-------HHHHHHHHHHHH
Confidence 34567778899999999999999998776 2222000 00111100 000 013444555555
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChH
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 524 (624)
...|++++|+..++++.+. .| +...+..+..+|...|++++|+..|+++.+ +.| +...+..+..++...|+.+
T Consensus 207 ~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665552 34 556666666667777777777777776665 334 4556666666666666666
Q ss_pred HH-HHHHHHHH
Q 006955 525 VG-EIAGERVM 534 (624)
Q Consensus 525 ~a-~~~~~~~~ 534 (624)
+| ...++++.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66 33455544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-06 Score=72.15 Aligned_cols=132 Identities=8% Similarity=-0.035 Sum_probs=86.9
Q ss_pred HHHHHHHhcccChHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHH
Q 006955 439 FVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTV 509 (624)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~ 509 (624)
+..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++..+. +..+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444555555566665555555442100011 235667777888888888888888776542 1111 1446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCC------CCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 510 WGALLGACRIHNNIKVGEIAGERVMELEPN------NSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..+..++...|++++|...++++++..+. .+..+..++.+|...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 677777888899999999999888875321 2356888899999999999999999887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=83.06 Aligned_cols=148 Identities=12% Similarity=0.045 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 006955 402 ISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDL 481 (624)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 481 (624)
..+..+...+...|++++|...|++... ..|+... +...|+.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3455666667777888888888888776 3454332 233444444433221 2367889999
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH-HhcCChHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY-LSCGRRED 559 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 559 (624)
|.+.|++++|+..+++.++. .| +...|..+..++...|++++|...+++++++.|.++.++..|..+. ...+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998873 45 6788999999999999999999999999999999999999988884 45577888
Q ss_pred HHHHHHHHHHCC
Q 006955 560 AKRIFAQMKENG 571 (624)
Q Consensus 560 A~~~~~~m~~~~ 571 (624)
+...+.+|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888888886654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.8e-06 Score=65.89 Aligned_cols=104 Identities=9% Similarity=-0.074 Sum_probs=74.8
Q ss_pred HHHHHhcccChHHHHHHHHHHhhhhcCCCCC-c---chHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHH
Q 006955 441 GVLSACSYAGLVDQGRYYFDCMKNKYFLQPR-S---AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGA 512 (624)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ 512 (624)
.+...+...|++++|...++++.+. .|+ . ..+..+..+|...|++++|+..++++.+. .|+ +..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 3445566777777777777777764 243 3 46677788888888888888888887763 343 556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
+..++...|++++|...++++++..|.++........
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 7888888899999999999998888866655444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.3e-06 Score=68.17 Aligned_cols=112 Identities=8% Similarity=-0.088 Sum_probs=70.4
Q ss_pred hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCC--CcC----HHHHH
Q 006955 438 TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGI--EVS----PTVWG 511 (624)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~~ 511 (624)
.+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+..- .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34445555566666666666666665531 12455666667777777777777777776655210 111 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.+..++...|++++|...++++.+..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777777788888888888888888777 5666665555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=7.7e-05 Score=70.48 Aligned_cols=181 Identities=11% Similarity=0.053 Sum_probs=109.9
Q ss_pred CHHHHHHHhccCC---CCCchhHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHH------
Q 006955 385 NIQSALLEFSSVP---IHDIISWNSIICGLAYH-G-YAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVD------ 453 (624)
Q Consensus 385 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~------ 453 (624)
.+++++..++.+. +.+..+|+.-...+... + ++++++++++++.+.. +-|...|+.-...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 3566666665554 33445666655555554 5 6777777777777632 223445554444444444444
Q ss_pred --HHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC-------hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 454 --QGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL-------IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 454 --~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
++.+.++++.+. .| |...|+....++.+.++ ++++++.+++++... +-|...|+-+-..+...|..
T Consensus 183 ~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 183 WGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 777777777764 34 67777777777766665 677888887777632 33566776666666555443
Q ss_pred --------------------HHHHHHHHHHHccC------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 524 --------------------KVGEIAGERVMELE------PNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 524 --------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.........+.... +..+..+..|+.+|...|+.++|.++++.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22223333332222 345667889999999999999999999988654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=6.6e-06 Score=76.87 Aligned_cols=113 Identities=8% Similarity=-0.132 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHH
Q 006955 435 DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGA 512 (624)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 512 (624)
+...+..+...+...|++++|...++++.+. .| +...|..+..+|.+.|++++|++.+++..+. .| +...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3456777778888899999999999988874 45 6778888899999999999999999988873 44 5778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
+..++...|++++|...+++++++.|.++..+...++...
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 8888899999999999999999988877655544444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-06 Score=69.58 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=71.8
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (624)
..|++++|+..|+++.+...-.| +...+..+..+|...|++++|++.+++..+.. +-++..+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777888888888776310024 56778888899999999999999999988742 33577888888889999999999
Q ss_pred HHHHHHHHccCCCCCchH
Q 006955 527 EIAGERVMELEPNNSGVY 544 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~ 544 (624)
...++++++..|.++...
T Consensus 81 ~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHH
Confidence 999999999998776553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00025 Score=67.00 Aligned_cols=229 Identities=10% Similarity=0.066 Sum_probs=149.4
Q ss_pred CCCchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh-C-CHHH
Q 006955 313 NDLGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC-G-NIQS 388 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 388 (624)
.+..++|++++.++... .|+. ..++.--..+...+ .++++..++..+..... -+..+++.-.-++.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHH
Confidence 34445677777777765 4443 33444444444455 47777777777776543 3334444444444444 5 7788
Q ss_pred HHHHhccCC---CCCchhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh------
Q 006955 389 ALLEFSSVP---IHDIISWNSIICGLAYHGYAE--------KALELFERMRLTDFKPDDITFVGVLSACSYAGL------ 451 (624)
Q Consensus 389 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------ 451 (624)
++++++++. +.|..+|+.-...+...+.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 888888877 345567776655555555555 8999999999853 3355677777766666665
Q ss_pred -HHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCCh--------------------HHHHHHHHHcccCC-----CC
Q 006955 452 -VDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLI--------------------DEAMNLLNEIRADG-----IE 504 (624)
Q Consensus 452 -~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~ 504 (624)
++++++.++++... .| |...|+.+-..+.+.|+. ....+...++...+ -.
T Consensus 223 ~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 223 SLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 78889998888873 46 788888877777776653 44455555555432 13
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHH-ccCCCCCchHHHHH
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVM-ELEPNNSGVYLILT 548 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 548 (624)
+++..+..|+..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 578899999999999999999999999987 57785444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.9e-06 Score=71.79 Aligned_cols=78 Identities=13% Similarity=0.000 Sum_probs=65.2
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC-chHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS-GVYLILT 548 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 548 (624)
+...|..+..+|.+.|++++|+..+++.++. .| ++..|..+..++...|++++|...++++++++|.++ .+...+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4567888999999999999999999998874 45 577899999999999999999999999999999877 4444444
Q ss_pred HH
Q 006955 549 EM 550 (624)
Q Consensus 549 ~~ 550 (624)
.+
T Consensus 140 ~~ 141 (162)
T 3rkv_A 140 IV 141 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.2e-06 Score=79.39 Aligned_cols=136 Identities=9% Similarity=-0.045 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDL 481 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 481 (624)
.|..+...+.+.|++++|+..|++..+. .|... .....+...+ ..| +...|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~-----------------~~~~~~~~~~---~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR-----------------AAAEDADGAK---LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH-----------------HHSCHHHHGG---GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc-----------------cccChHHHHH---HHHHHHHHHHHHHHH
Confidence 4555666667777777777777766541 11000 0000111111 234 56788899999
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
|.+.|++++|++.++++++. .| ++..+..+..++...|++++|...+++++++.|.++..+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 45 5788999999999999999999999999999999999999999999998888877
Q ss_pred HH
Q 006955 561 KR 562 (624)
Q Consensus 561 ~~ 562 (624)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00029 Score=66.20 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=117.4
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh-HHHHHHHH
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHG--YAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL-VDQGRYYF 459 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 459 (624)
+++++.+++.+. +.+..+|+.-...+...+ .+++++..++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555554 446667777666666666 3778888888888742 3344566655555556666 57888888
Q ss_pred HHhhhhcCCCC-CcchHHHHHHHhhcc--------------CChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc---
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDLLGRF--------------GLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH--- 520 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~--- 520 (624)
+++.+. .| |...|+....++... +.++++++.+.+... ..| |...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCc
Confidence 887774 35 666776655555443 457788888888776 344 566776555554433
Q ss_pred --------CChHHHHHHHHHHHccCCCCCchHHHHHHHH---HhcCChHHHHHHHHHHHHCC
Q 006955 521 --------NNIKVGEIAGERVMELEPNNSGVYLILTEMY---LSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 521 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~ 571 (624)
+.++++++.+++++++.|++...+..++... ...|..++....+.++.+..
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578888899999999997755544443322 24677788888888887654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=4.4e-06 Score=68.60 Aligned_cols=76 Identities=12% Similarity=0.000 Sum_probs=63.1
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccC-----CCCcC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----GIEVS-PTVW----GALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
..|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++++++.|.+..
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 37888888999999999999999888872 01675 5578 88899999999999999999999999998877
Q ss_pred hHHHHH
Q 006955 543 VYLILT 548 (624)
Q Consensus 543 ~~~~l~ 548 (624)
....+.
T Consensus 138 ~~~~~~ 143 (159)
T 2hr2_A 138 ETPGKE 143 (159)
T ss_dssp CCTTHH
T ss_pred HHHHHH
Confidence 655543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.7e-05 Score=78.01 Aligned_cols=167 Identities=8% Similarity=-0.110 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhc---CCCC-Ccc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLT-DFKPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKY---FLQP-RSA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~ 473 (624)
++..+...|...|++++|.+.+.++.+. +..++. .+.+.+...+...|+.+.+..+++...... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3667888899999999999999887652 111222 123333445667789999999888766431 1112 245
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCC----C
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELE---PNN----S 541 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 541 (624)
++..++..|...|++++|..++++.... +-.| ...++..++..|...|++++|...++++.... |.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6778999999999999999999876432 1122 24577888899999999999999999998743 222 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3467778888899999999988877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00021 Score=67.16 Aligned_cols=193 Identities=8% Similarity=-0.032 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhC--CHHHHHHHhccCC---CCCchhHHHHHHHHHHcCC-hHHHHHHHH
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCG--NIQSALLEFSSVP---IHDIISWNSIICGLAYHGY-AEKALELFE 425 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 425 (624)
+.+..++..+.... |-+..+++.-.-++.+.| .+++++.+++++. +.|..+|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 44555555555543 223334443334444445 4677777777776 4567788877777777887 589999999
Q ss_pred HHHHCCCCCChhhHHHHHHHhccc--------------ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhcc-----
Q 006955 426 RMRLTDFKPDDITFVGVLSACSYA--------------GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRF----- 485 (624)
Q Consensus 426 ~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----- 485 (624)
++.+.. +-|...|+.....+... +.++++.+.++.... ..| |...|+.+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccc
Confidence 998853 23445555444333322 568889999998887 457 778887666666555
Q ss_pred ------CChHHHHHHHHHcccCCCCcCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006955 486 ------GLIDEAMNLLNEIRADGIEVSP-TVWGALLGA---CRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551 (624)
Q Consensus 486 ------g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 551 (624)
+.++++++.++++.+ +.||. .++.+++.. ....|..++....+.++.+++|....-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 457899999999987 56764 233332221 22467888999999999999997766676665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.8e-06 Score=64.55 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=77.8
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------CchH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN------SGVY 544 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 544 (624)
+...+..+...+...|++++|++.+++..+.. +.++..+..+..++...|++++|...+++++++.|.+ +..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45567778888999999999999999988742 3367888889999999999999999999999999987 6778
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 006955 545 LILTEMYLSCGRREDAKRIFA 565 (624)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~ 565 (624)
..++.++...|++++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 888888888887777766554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=80.29 Aligned_cols=115 Identities=9% Similarity=-0.018 Sum_probs=53.1
Q ss_pred HHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChH
Q 006955 377 ITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLV 452 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 452 (624)
...+.+.|++++|++.+++.. +.+..+|..+..+|...|++++|+..+++..+. .|+ ...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 334455555555555555443 223445555555555555555555555555552 232 23444444555555555
Q ss_pred HHHHHHHHHhhhhcCCCC-CcchHHHHHHH--hhccCChHHHHHHHH
Q 006955 453 DQGRYYFDCMKNKYFLQP-RSAHYTCVVDL--LGRFGLIDEAMNLLN 496 (624)
Q Consensus 453 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 496 (624)
++|.+.++++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555442 23 23333333333 444455555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=62.60 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=60.7
Q ss_pred HHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 490 EAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.|++.+++..+.. +.++..+..+..++...|++++|...++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677766532 335667777778888888888888888888888888888888888888888888888888887765
Q ss_pred C
Q 006955 570 N 570 (624)
Q Consensus 570 ~ 570 (624)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.5e-05 Score=74.87 Aligned_cols=97 Identities=6% Similarity=-0.023 Sum_probs=79.7
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccC--------------CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRAD--------------GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+..+...+.+.|++++|++.|++.++. ...| +..+|..+..++...|++++|+..+++++++.|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 455566666777777777777666541 0223 4568888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 540 NSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++.++..++.+|...|++++|.+.+++..+..
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999987753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.1e-07 Score=86.11 Aligned_cols=256 Identities=13% Similarity=0.157 Sum_probs=170.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCC--CCCchhHHHHHHHHHhC
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGME--VRDVVTWNSMISGYVCN 96 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~ 96 (624)
..+.+|+.|.++..+.|.+.+|+..|=+. .|+..|..++.+..+.|.+++-.+.+...+ ..++.+=+.|+-+|++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 35678888999998889888888765444 455568888899999999999999887666 45666778899999999
Q ss_pred CChhHHHHHhccCCC-CCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCC
Q 006955 97 GLIDEALRVFHGMPL-KDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKD 175 (624)
Q Consensus 97 g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 175 (624)
++..+- ++... ||..-...+..-|...|.++.|.-+|..+. .|.-|..++.+.|++..|.+.-++ ..+
T Consensus 130 ~rL~el----Eefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--Ans 198 (624)
T 3lvg_A 130 NRLAEL----EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--ANS 198 (624)
T ss_dssp CSSSTT----TSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CCS
T ss_pred CcHHHH----HHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cCC
Confidence 887663 33332 777777888888888888888877776554 445556667777777777655432 347
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC---CCcchHHHHHHHHHhcC
Q 006955 176 VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE---TCEKTWNSIISVLIRNG 252 (624)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 252 (624)
+.||..+..+|...+++.-|--.--.+.- ...-...++..|-..|.+++-+.+++.... ...-.|+-|.-.|++-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 78888888899988888766544333321 111123456667777888877777776653 2333566666566554
Q ss_pred ChHHHHHHHhhcC-----------CCCcchhhHHHHHHHhcCChHHHH
Q 006955 253 LVKEAHSYLEKYP-----------YSNIASWTNVIVGYFEMGEVGSAI 289 (624)
Q Consensus 253 ~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~ 289 (624)
..++..+.++..- ......|.-++-.|..-.++|.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3333333333222 123344666666676666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=9.5e-05 Score=76.10 Aligned_cols=168 Identities=10% Similarity=-0.060 Sum_probs=132.3
Q ss_pred HHHHHHHhccCC---CCCchhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcccC-
Q 006955 386 IQSALLEFSSVP---IHDIISWNSIICGLAYHGY----------AEKALELFERMRLTDFKP-DDITFVGVLSACSYAG- 450 (624)
Q Consensus 386 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g- 450 (624)
.++|++.++++. +.+..+|+.-..++...++ ++++++.++++.+. .| +..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 355666666665 3344567766666666666 89999999999884 45 4467877777777888
Q ss_pred -hHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC-ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc-------
Q 006955 451 -LVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG-LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH------- 520 (624)
Q Consensus 451 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~------- 520 (624)
+++++.+.++++.+. .| +...|+.-..++.+.| .++++++.++++++.. +-+...|+....++...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 779999999999984 46 7888888888888888 8999999999998843 33677887777766542
Q ss_pred -------CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006955 521 -------NNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRED 559 (624)
Q Consensus 521 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 559 (624)
+.++++.+.+.+++..+|.|..+|..+...+...|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.99 E-value=9.5e-06 Score=78.03 Aligned_cols=150 Identities=5% Similarity=-0.051 Sum_probs=80.9
Q ss_pred hhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh
Q 006955 372 VSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451 (624)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 451 (624)
.+..+...+.+.|++++|+..|++....++... .+...++..++...+. ...+..+..++.+.|+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLKR 245 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCC
Confidence 356678888999999999999988662221111 1222333333332221 1367778888899999
Q ss_pred HHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHHHHHH-HhcCChHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGALLGAC-RIHNNIKVGEI 528 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~-~~~g~~~~a~~ 528 (624)
+++|+..++++.+. .| +...|..+..+|...|++++|...|+++.+ +.|+ ...+..+.... ...+..+.+..
T Consensus 246 ~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 246 YDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp CHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998874 46 678888999999999999999999999887 4564 44555555552 45677888889
Q ss_pred HHHHHHccCCCCC
Q 006955 529 AGERVMELEPNNS 541 (624)
Q Consensus 529 ~~~~~~~~~p~~~ 541 (624)
.|.++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999888654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.4e-05 Score=58.81 Aligned_cols=65 Identities=28% Similarity=0.301 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
++..+..+..++...|++++|+..++++++.+|.++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888999999999999999999988889999999999999999999988887654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-05 Score=58.06 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=68.8
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
+...+..+...+...|++++|++.+++..+.. +.++..+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35567778888888999999999998887632 33577888888888999999999999999999999888888888888
Q ss_pred HHhcC
Q 006955 551 YLSCG 555 (624)
Q Consensus 551 ~~~~g 555 (624)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-05 Score=77.63 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=86.0
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----------------PTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
....+..+...|.+.|++++|+..|+++++ +.|+ ...|..+..++...|++++|+..+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 355667777888888888888888888776 3333 4788899999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 535 ELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 535 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+++|.++..|..++.+|...|++++|...|++..+..
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.94 E-value=5.5e-06 Score=79.22 Aligned_cols=411 Identities=10% Similarity=0.085 Sum_probs=244.1
Q ss_pred CCCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHcCCChhhHHHHHhcCC
Q 006955 2 RNARIQEAQNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPE--RDMFTYNTVIAGLMQSDNVQGAKEVFDGME 79 (624)
Q Consensus 2 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 79 (624)
+.|++.+|++.|= ...|+..|..++.+..+.|.+++-++.+.-..+ .++.+-+.|+-+|++.++..+-++++ .
T Consensus 66 ~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl---~ 140 (624)
T 3lvg_A 66 QKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---N 140 (624)
T ss_dssp TSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT---S
T ss_pred ccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH---c
Confidence 3455566665552 236888899999999999999999999988873 67788889999999999988766543 3
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHhccCCC------------------------CCcccHHHHHHHHHcCCChHHHHH
Q 006955 80 VRDVVTWNSMISGYVCNGLIDEALRVFHGMPL------------------------KDVVSWNLVIGALVNCQRMDLAES 135 (624)
Q Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~l~~~~~~~~~~~~a~~ 135 (624)
.||..-...++.-+...|.++.|.-+|..+.. .++.||-.+-.+|...+++.-|.-
T Consensus 141 ~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 141 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHH
Confidence 57777778899999999999999888877641 466678777778887777766654
Q ss_pred HHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC-------
Q 006955 136 YFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR------- 205 (624)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 205 (624)
.--.++- .+.-...++..|-..|.+++.+.+++.-. +...-.|+-|.-.|++- ++++..+.++..-.+
T Consensus 221 cGLniIv-hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 221 CGLHIVV-HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HHHHHHC-CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred hcchhcc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 4333321 11122334556667777777666666554 23556777777777765 566666666554432
Q ss_pred ----CcccHHHHHHHHHcCCCHHHHHHHhhhC-------------CC--CCcchHHHHHHHHHhcCChHHHHHHHhhcCC
Q 006955 206 ----DLTSWKQLINGLVNSRRIDAAISYFKQM-------------PE--TCEKTWNSIISVLIRNGLVKEAHSYLEKYPY 266 (624)
Q Consensus 206 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------------~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (624)
....|..++-.|.+-.+++.|....-.- .. +|...|...+..|..
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~---------------- 362 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE---------------- 362 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTT----------------
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHH----------------
Confidence 3345777777777777777665332111 00 233344444444432
Q ss_pred CCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhc---CCCchHHHHHHHHhHHcCCCCCHHHHHHHHH
Q 006955 267 SNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE---NDLGEEGLKFFVQMKESGPSPDNATFTSVLT 343 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 343 (624)
..+...+-|+......=+...+.++|.+... -.|+.-|.. ..+...+-+.+.++.-. .-|-.++..-+.
T Consensus 363 e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~------LpLIkpYL~~Vq~~N~~aVNeAln~L~IE--EEDy~~LR~SId 434 (624)
T 3lvg_A 363 FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ------LPLVKPYLRSVQNHNNKSVNESLNNLFIT--EEDYQALRTSID 434 (624)
T ss_dssp SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTC------GGGGTGGGTSCCCSCCHHHHHHHHHHHHH--TTCCHHHHHTTS
T ss_pred hChHHHHHHHHhccccCChHHHHHHHHhcCC------chhhHHHHHHHHHhhHHHHHHHHHHHHhh--hhhHHHHHHHHH
Confidence 2333444555554444444555555544321 112222211 11222222333332211 122233333333
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 006955 344 ICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALEL 423 (624)
Q Consensus 344 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 423 (624)
.|-+-..+..|.++-. .+-...-..-...|.+.++|.+++++.++=. .|.-.|...+..|+.+-|+++
T Consensus 435 ~ydNFD~i~LA~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeL 502 (624)
T 3lvg_A 435 AYDNFDNISLAQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEEL 502 (624)
T ss_dssp SCCCSCTTHHHHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHH
T ss_pred HhccccHHHHHHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444321 0111112234556778888888877665433 122234455667888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHH
Q 006955 424 FERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 424 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
++-..+.| +...|...+-.|...=++|.+.++
T Consensus 503 L~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 503 LQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 88888755 556788888888887777766654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.1e-05 Score=65.05 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC----Ccc
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFK-PDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP----RSA 473 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 473 (624)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++..+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4666777788888888888888877653111 111 3666777788888999999988888765321111 145
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHcccC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRAD----GIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++++++.+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999886642 2112 244677788889999999999999999987554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=8.9e-06 Score=66.59 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=69.3
Q ss_pred hccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNN----------IKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.+.+.+++|++.+++..+.. +.++..|..+..++...|+ +++|+..|+++++++|+++.+|..++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556777777777776632 3356667666666666554 569999999999999999999999999999
Q ss_pred hcC-----------ChHHHHHHHHHHHHCC
Q 006955 553 SCG-----------RREDAKRIFAQMKENG 571 (624)
Q Consensus 553 ~~g-----------~~~~A~~~~~~m~~~~ 571 (624)
..| ++++|.+.|++..+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 875 8999999999998764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00013 Score=73.01 Aligned_cols=162 Identities=10% Similarity=0.010 Sum_probs=119.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc
Q 006955 409 CGLAYHGYAEKALELFERMRLTDFKPDD----------------ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS 472 (624)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 472 (624)
..+...|++++|++.|.++.+....... ..+..+...|...|++++|.+++..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4466778888999988888774222111 136778889999999999999999887643222221
Q ss_pred ----chHHHHHHHhhccCChHHHHHHHHHccc----CCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC------
Q 006955 473 ----AHYTCVVDLLGRFGLIDEAMNLLNEIRA----DGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELE------ 537 (624)
Q Consensus 473 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 537 (624)
.+.+.+...+...|+.+.|.+++++... .+..+. ..++..|...+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2344555666778999999999887643 222333 5578889999999999999999999988632
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 538 PNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|....++..++.+|...|++++|..++++.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 222457899999999999999999999987653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00011 Score=54.82 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=61.4
Q ss_pred CcCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCCc
Q 006955 504 EVSPTVWGALLGACRIHNN---IKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGVK 573 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 573 (624)
++++..+..+..++...++ .++|..+++++++.+|.++.....++..+...|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577888888888755444 799999999999999999999999999999999999999999999887643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.8e-05 Score=74.42 Aligned_cols=126 Identities=10% Similarity=-0.006 Sum_probs=95.8
Q ss_pred hcccChHHHHHHHHHHhhhhc--CCCC----CcchHHHHHHHhhccCChHHHHHHHHHcccC-----C-CCcC-HHHHHH
Q 006955 446 CSYAGLVDQGRYYFDCMKNKY--FLQP----RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----G-IEVS-PTVWGA 512 (624)
Q Consensus 446 ~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~~~ 512 (624)
+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456788888887777765431 1223 2456888999999999999999988876532 1 1232 447888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHc-----cCCCCCch---HHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 513 LLGACRIHNNIKVGEIAGERVME-----LEPNNSGV---YLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|...|...|++++|+.+++++++ +.|++|.+ ...|..++...|++++|..++.+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999987 56766655 5678888889999999999999998754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=9e-05 Score=74.33 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=93.2
Q ss_pred HhhccCChHHHHHHHHHcccC---CCCc---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCc---hHH
Q 006955 481 LLGRFGLIDEAMNLLNEIRAD---GIEV---S-PTVWGALLGACRIHNNIKVGEIAGERVME-----LEPNNSG---VYL 545 (624)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~---g~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 545 (624)
.+...|++++|+.++++.++. -+.| + ..+++.|..+|...|++++|+.+++++++ +.|++|. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999998876542 1222 2 45888999999999999999999999987 4565554 488
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHHHhh
Q 006955 546 ILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIEREI 618 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (624)
.|+.+|..+|++++|..++++..+.-. . .-+..||.+.++...+.....+++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-V-----------------THGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-H-----------------HhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876421 1 124679999999988888877666543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=2.2e-05 Score=64.25 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=66.9
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC----------hHHHHHHHHHcccCCCCc-CHHHHHHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL----------IDEAMNLLNEIRADGIEV-SPTVWGALLG 515 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 515 (624)
+.+.+++|.+.++...+. .| +...|..+..++...++ +++|+..|++.++ +.| +...|..+..
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 345667777777777763 45 66777777777776655 4588888888887 556 4668888888
Q ss_pred HHHhc-----------CChHHHHHHHHHHHccCCCCC
Q 006955 516 ACRIH-----------NNIKVGEIAGERVMELEPNNS 541 (624)
Q Consensus 516 ~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 541 (624)
+|... |++++|+..|+++++++|.++
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 88766 589999999999999999654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=71.80 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=92.7
Q ss_pred HHHhhccCChHHHHHHHHHcccC---CCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCc---h
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRAD---GIEVS----PTVWGALLGACRIHNNIKVGEIAGERVME-----LEPNNSG---V 543 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~ 543 (624)
+..+...|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455778999999999887643 12332 34788899999999999999999999987 4455554 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 006955 544 YLILTEMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLNLLHTEIE 615 (624)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (624)
+..|+.+|..+|++++|..++++..+.-. . .-+..||...+++..|.+...++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999876421 1 124679999999999988887765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.001 Score=54.06 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKV 525 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 525 (624)
++.++|.++|++..+.. ++... |...|...+..++|+++|++..+.| ++..+..|...|.. .+|+++
T Consensus 9 ~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45666777777666532 22222 6666666667777777777776543 45566666666665 677788
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 526 GEIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 526 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
|...++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|.
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888877765 366777788888877 7788888888887777763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=55.98 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=61.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
++...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788888999999999999999999999999999999999999999999999999999987764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=57.10 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006955 454 QGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGER 532 (624)
Q Consensus 454 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 532 (624)
.+...++++.+ ..| +...+..+...|...|++++|++.+++..+.. +.+...|..+..++...|++++|...+++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566666665 335 67778888888888899999999988887632 33567888888888889999999999999
Q ss_pred HHccCCC
Q 006955 533 VMELEPN 539 (624)
Q Consensus 533 ~~~~~p~ 539 (624)
+++..|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887774
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=72.56 Aligned_cols=107 Identities=10% Similarity=0.185 Sum_probs=81.4
Q ss_pred ccCChHHHHHHHHHcccC---CCCcC----HHHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCc---hHHHHH
Q 006955 484 RFGLIDEAMNLLNEIRAD---GIEVS----PTVWGALLGACRIHNNIKVGEIAGERVME-----LEPNNSG---VYLILT 548 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~ 548 (624)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|++|. .+..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357888888888775431 12232 35788899999999999999999999987 4555554 489999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCccCCceeEEEEcCeEEEEeeCCCCCcchHHHHHHHH
Q 006955 549 EMYLSCGRREDAKRIFAQMKENGVKKEPGCSWIQINDGGHVFLSGDSSHPKFHRLRYLLN 608 (624)
Q Consensus 549 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (624)
.+|..+|++++|..++++..+.-. . .-+..||.+.+++..|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME-V-----------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH-H-----------------HcCCCChHHHHHHHHHh
Confidence 999999999999999999876421 1 12467999998887665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.001 Score=68.47 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=123.1
Q ss_pred HcC-ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccCh----------HHHHHHHHHHhhhhcCCCC-CcchHHHHH
Q 006955 413 YHG-YAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGL----------VDQGRYYFDCMKNKYFLQP-RSAHYTCVV 479 (624)
Q Consensus 413 ~~~-~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 479 (624)
..| ..++|++.++++.. +.|+. ..|+.--.++...|+ ++++.+.++.+.+. .| +..+|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 444 45788999999998 56765 456555455555555 89999999999984 46 788888888
Q ss_pred HHhhccC--ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc--
Q 006955 480 DLLGRFG--LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN-NIKVGEIAGERVMELEPNNSGVYLILTEMYLSC-- 554 (624)
Q Consensus 480 ~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 554 (624)
.++.+.| +++++++.++++.+.. +-+...|+.-..+....| .++++.+.++++++.+|.|..+|...+.++...
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 8888999 7799999999999843 336778888888888888 899999999999999999999999999998874
Q ss_pred ------------CChHHHHHHHHHHHHC
Q 006955 555 ------------GRREDAKRIFAQMKEN 570 (624)
Q Consensus 555 ------------g~~~~A~~~~~~m~~~ 570 (624)
++++++.+.+++....
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHHhh
Confidence 5578898888887753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00035 Score=51.71 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788888899999999999999999999999999999999999999999999999999987753
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0003 Score=53.42 Aligned_cols=66 Identities=8% Similarity=-0.060 Sum_probs=50.5
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
++..+..+..+|...|++++|++.|++..+. .| ++..|..+..++...|++++|...+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5667777888888888888888888887763 34 466777788888888888888888888887655
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.11 Score=53.43 Aligned_cols=116 Identities=10% Similarity=-0.068 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHH
Q 006955 416 YAEKALELFERMRLTD-FKPDDI--TFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAM 492 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 492 (624)
+.+.|...+....+.+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677777777765432 222111 2223333444445344445555543321 133333344444445667777777
Q ss_pred HHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 493 NLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
+.|+.|.... ...+...--+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777776521 11233333444555667777777777777754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0048 Score=49.94 Aligned_cols=112 Identities=9% Similarity=-0.109 Sum_probs=91.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHH
Q 006955 415 GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDE 490 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 490 (624)
+++++|..+|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 33333 667777888888999999998874 367778888888887 889999
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 538 (624)
|.++|++..+.| ++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998754 56677778888877 8999999999999988753
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0012 Score=53.45 Aligned_cols=90 Identities=14% Similarity=-0.039 Sum_probs=61.2
Q ss_pred cChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCCh
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNI 523 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~ 523 (624)
.+....+++.+.+..... .++..+...+.+++++.+ +.++++.++++..+.. .| ....+-.|.-+|.+.|++
T Consensus 11 ~~~l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH
Confidence 345666666666665532 256777777777888777 5668888888877643 24 244555666677788888
Q ss_pred HHHHHHHHHHHccCCCCC
Q 006955 524 KVGEIAGERVMELEPNNS 541 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~ 541 (624)
++|.++++++++.+|.|.
T Consensus 88 ~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCCCCH
Confidence 888888888888888553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0076 Score=56.85 Aligned_cols=139 Identities=15% Similarity=-0.023 Sum_probs=81.6
Q ss_pred CCCchhHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcc--------cChHHHHHHHHHHhh
Q 006955 398 IHDIISWNSIICGLA--YHG---YAEKALELFERMRLTDFKPDD-ITFVGVLSACSY--------AGLVDQGRYYFDCMK 463 (624)
Q Consensus 398 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~--------~g~~~~a~~~~~~~~ 463 (624)
+.+...|...+.+.. ..+ ...+|..+|++..+ ..|+. ..+..+..++.. ..........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 335566666665532 222 34678888888887 56764 333333333211 001111112222211
Q ss_pred hhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 464 NKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.....+.++.+|..+...+...|++++|...+++++.. .|+...|..+...+...|++++|...+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11111236667777766666678888888888888774 4776677667777778888888888888888888844
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=49.33 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCc-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEV-SPT-VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
....+.+.|++++|++.++++.+. .| ++. .+..+..++...|++++|...++++++..|.++..+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 455677889999999999988773 44 566 78888888889999999999999999999988776632 4
Q ss_pred ChHHHHHHHHH
Q 006955 556 RREDAKRIFAQ 566 (624)
Q Consensus 556 ~~~~A~~~~~~ 566 (624)
.+.++...+++
T Consensus 76 ~~~~a~~~~~~ 86 (99)
T 2kc7_A 76 MVMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 45555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0033 Score=59.31 Aligned_cols=136 Identities=9% Similarity=0.025 Sum_probs=95.1
Q ss_pred CCCChhhHHHHHHHhcc-----cChHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHhhc---cC-----ChHHHHHHHHH
Q 006955 432 FKPDDITFVGVLSACSY-----AGLVDQGRYYFDCMKNKYFLQPR-SAHYTCVVDLLGR---FG-----LIDEAMNLLNE 497 (624)
Q Consensus 432 ~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-----~~~~A~~~~~~ 497 (624)
.+.+...|..++.+... .....+|+.+|+++.+ +.|+ ...|..+..+|.. .+ ........++.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45566788877765432 2446889999999998 4674 4555555444431 11 11111111222
Q ss_pred cccC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 498 IRAD-GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 498 ~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.... ..+.++.++..+...+...|++++|...+++++.++| +...|..+++++...|++++|.+.+++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1111 1255788888888888888999999999999999997 67778899999999999999999999887764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0014 Score=49.43 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCc-hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSG-VYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
....+...|++++|...++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999998764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0029 Score=57.07 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHcccCCCCcC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHccCCCC-CchHHHHHHHHHhc-CC
Q 006955 487 LIDEAMNLLNEIRADGIEVS---PTVWGALLGACRI-----HNNIKVGEIAGERVMELEPNN-SGVYLILTEMYLSC-GR 556 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~ 556 (624)
....|..++++.++ +.|+ ...|..|...|.. -|+.++|.++|+++++++|+. ..++...++.++.. |+
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 35678888888877 6676 5578888888877 499999999999999999974 99999999999885 99
Q ss_pred hHHHHHHHHHHHHCCCccCCc
Q 006955 557 REDAKRIFAQMKENGVKKEPG 577 (624)
Q Consensus 557 ~~~A~~~~~~m~~~~~~~~~~ 577 (624)
.++|.+.+++........+|+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999987655565
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0043 Score=47.25 Aligned_cols=78 Identities=9% Similarity=-0.014 Sum_probs=59.7
Q ss_pred CcchHHHHHHHhhccCChHHHHHHHHHcccC------CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 471 RSAHYTCVVDLLGRFGLIDEAMNLLNEIRAD------GIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
+..-+-.+...+...|++..|..+++++.+. +-.+.+.++..|..++.+.|+++.|...+++++++.|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344456777788888888888888776542 0124567888999999999999999999999999999887765
Q ss_pred HHHH
Q 006955 545 LILT 548 (624)
Q Consensus 545 ~~l~ 548 (624)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.017 Score=46.61 Aligned_cols=79 Identities=9% Similarity=-0.038 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhcccC---hHHHHHHHHHHhhhhcCCCC--CcchHHHHHHHhhccCChHHHHH
Q 006955 419 KALELFERMRLTDFKPDDITFVGVLSACSYAG---LVDQGRYYFDCMKNKYFLQP--RSAHYTCVVDLLGRFGLIDEAMN 493 (624)
Q Consensus 419 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 493 (624)
.+.+.|.+..+.|. ++..+.-.+..++.+.+ ++++++.+++.+.+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444444444332 33333334444444444 4445555555554431 12 12333334444455555555555
Q ss_pred HHHHccc
Q 006955 494 LLNEIRA 500 (624)
Q Consensus 494 ~~~~~~~ 500 (624)
.++.+++
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.17 Score=39.30 Aligned_cols=141 Identities=9% Similarity=0.075 Sum_probs=91.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 490 (624)
+.-.|..++..++..+..+ ..+..-+|.++--....-+-+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 3445666777777766654 223334444443333334444455555554443222 23455555
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
....+-.+- .+.......+.....+|.-++-.+++..++.-+|.+|..+..++.+|.+.|+..+|.+++.+..++
T Consensus 80 Vi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 555554433 233445566677778999999999999976666669999999999999999999999999999999
Q ss_pred CCc
Q 006955 571 GVK 573 (624)
Q Consensus 571 ~~~ 573 (624)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 975
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.022 Score=42.08 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=51.9
Q ss_pred CCcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 470 PRSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 470 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
+++..+..+..++...++ .++|..++++.++ ..| ++..+..+...+...|++++|...|+++++..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366777777777754444 6888888888877 455 4667777778888888888888888888888886
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=57.09 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=70.8
Q ss_pred ccChHHHHHHHHHHhhhhc--CCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC-----C-CCcC-HHHHHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKY--FLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----G-IEVS-PTVWGALL 514 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~~~l~ 514 (624)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467888888887765531 12232 456888999999999999999998886532 2 1233 44788899
Q ss_pred HHHHhcCChHHHHHHHHHHHc-----cCCCCCchH
Q 006955 515 GACRIHNNIKVGEIAGERVME-----LEPNNSGVY 544 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 544 (624)
..|...|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 557665443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.27 Score=42.81 Aligned_cols=148 Identities=9% Similarity=0.013 Sum_probs=73.5
Q ss_pred HhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHH
Q 006955 44 FNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGA 123 (624)
Q Consensus 44 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 123 (624)
.+.+..++...-...+..+++.|..+....+.+.+..+|..+-...+.++...|+.+....+.+.+..+++..-...+.+
T Consensus 25 ~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~a 104 (211)
T 3ltm_A 25 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 104 (211)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33333455555555555555555544444444444455555555555555555554443333344444555555555555
Q ss_pred HHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCC
Q 006955 124 LVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (624)
+.+.++.+....+.+.+..++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.+.
T Consensus 105 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 105 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 55555544443444433345555555555555555554433333333334455555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.022 Score=56.11 Aligned_cols=102 Identities=9% Similarity=-0.112 Sum_probs=72.2
Q ss_pred HHhcccChHHHHHHHHHHhhhhc--CCCCC----cchHHHHHHHhhccCChHHHHHHHHHcccC-----C-CCcC-HHHH
Q 006955 444 SACSYAGLVDQGRYYFDCMKNKY--FLQPR----SAHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----G-IEVS-PTVW 510 (624)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~ 510 (624)
..+.+.|++++|...+++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++++. | ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33456677888888877766431 12232 456788888899999999999888876532 1 1232 4477
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCCchHH
Q 006955 511 GALLGACRIHNNIKVGEIAGERVME-----LEPNNSGVYL 545 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 545 (624)
+.|...|...|++++|+.+++++++ +.|++|.+-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 8888899999999999999999987 5676665543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.2 Score=43.65 Aligned_cols=157 Identities=11% Similarity=-0.012 Sum_probs=92.4
Q ss_pred CChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCCh
Q 006955 66 DNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDV 145 (624)
Q Consensus 66 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 145 (624)
++.+....+++.+..++..+-...+..+...|..+....+.+.+..++...-...+.++.+.++.+....+.+.+..+|+
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 95 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDG 95 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 34444455555555667766666677777777655555555555556666666667777776665555555555555676
Q ss_pred hHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccCCcccHHHHHHHHHcCCC
Q 006955 146 ASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTSWKQLINGLVNSRR 222 (624)
Q Consensus 146 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (624)
..-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.|+.+....+.+.+.+++..+-...+.++...+.
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 66667777777777655555555555566666666666666666665433334343334444444444555544444
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.26 Score=42.52 Aligned_cols=143 Identities=10% Similarity=0.002 Sum_probs=64.9
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 006955 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQ 128 (624)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (624)
.++...-...+.++.+.++.+....+.+.+..++..+-...+.++...|..+....+.+.+..+++......+.++.+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444443333333333334444444444444444444433333333333455555555555555555
Q ss_pred ChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCC
Q 006955 129 RMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGC 191 (624)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (624)
+.+....+.+.+..++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.|.
T Consensus 105 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 444333333333344555555555555555544333333333334455555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.062 Score=58.35 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=74.5
Q ss_pred HHHHhcCChHHHHH-HHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhc
Q 006955 29 RGYFKNGFLDNAMC-LFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFH 107 (624)
Q Consensus 29 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 107 (624)
......++++.|.+ ++..+. +......++..+.+.|.++.|..+.+. . ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 34456778888877 553333 122236667777778888888776532 1 111334566788888888877
Q ss_pred cCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHH
Q 006955 108 GMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEAR 165 (624)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 165 (624)
.+ .+...|..+...+.+.++++.|++.|.++.. +..+...+...|+.+...
T Consensus 677 ~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 677 DE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp TC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHH
T ss_pred hh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHH
Confidence 66 4556788888888888888888887776642 333444444455554433
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.21 Score=43.08 Aligned_cols=176 Identities=11% Similarity=0.012 Sum_probs=121.3
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHH
Q 006955 10 QNLFDKMPQRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSM 89 (624)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 89 (624)
..+++.+..+|+.+-...+.++.+.|..+..-.+.+.+..++..+-...+.+++..++.+....+.+.+..++..+-...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a 96 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 96 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 34555566688888888888888888766666666666678887777888888888877666666666668888888888
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhc
Q 006955 90 ISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFD 169 (624)
Q Consensus 90 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 169 (624)
+.++.+.|+.+....+.+.+..++...-...+.++.+.++......+.+.+..++..+-...+.++.+.|+.+ +...+.
T Consensus 97 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~-~~~~L~ 175 (201)
T 3ltj_A 97 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGER-VRAAME 175 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHH-HHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 8888888887666666666656888777888888888887665555555555577777777788888777644 333333
Q ss_pred cCC-CCChhHHHHHHHHH
Q 006955 170 KMP-AKDVQAWNLMIAGY 186 (624)
Q Consensus 170 ~~~-~~~~~~~~~l~~~~ 186 (624)
.+. .++..+-...+.+.
T Consensus 176 ~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 176 KLAETGTGFARKVAVNYL 193 (201)
T ss_dssp HHHHHCCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 322 34444433333333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.12 Score=39.95 Aligned_cols=92 Identities=14% Similarity=-0.038 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHH---HHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDE---AMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIK 524 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~ 524 (624)
..+..+.+.+.+.... + .|+..+-..+.+++.+..+... ++.++++....+ .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3445555556555443 2 2677777778888888886666 899999988754 34 2335556667789999999
Q ss_pred HHHHHHHHHHccCCCCCchH
Q 006955 525 VGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 525 ~a~~~~~~~~~~~p~~~~~~ 544 (624)
+|.+.++.+++..|.|..+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999775543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.15 Score=55.24 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHHHcCCChHHHHH-HHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 006955 121 IGALVNCQRMDLAES-YFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLF 199 (624)
Q Consensus 121 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 199 (624)
.......++++.|.+ ++..+. +......++..+.+.|..+.|.++.+. .. .-.......|+++.|.++.
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHH
Confidence 344455677777776 543322 122336666677777777777776642 11 1133445667888887776
Q ss_pred HHcccCCcccHHHHHHHHHcCCCHHHHHHHhhhCCC
Q 006955 200 QKMHDRDLTSWKQLINGLVNSRRIDAAISYFKQMPE 235 (624)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 235 (624)
+.+ .+...|..+...+.+.++++.|.+.|..+.+
T Consensus 676 ~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 676 TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 655 3445677777777777777777777777644
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.015 Score=52.44 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhcCCCCC---cchHHHHHHHhhc-----cCChHHHHHHHHHcccCCCCcC--HHHHHHHHHHHHh-c
Q 006955 452 VDQGRYYFDCMKNKYFLQPR---SAHYTCVVDLLGR-----FGLIDEAMNLLNEIRADGIEVS--PTVWGALLGACRI-H 520 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~-~ 520 (624)
...|...++++.+ +.|+ ...|..+...|.. -|+.++|.+.|++.++ +.|+ ..++......++. .
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 4556666666665 4554 4467777777776 3788888888887776 5563 5566666666655 4
Q ss_pred CChHHHHHHHHHHHccCCC
Q 006955 521 NNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~ 539 (624)
|+.+.+.+.+++++...|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7788888888888776664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.035 Score=42.05 Aligned_cols=66 Identities=12% Similarity=-0.015 Sum_probs=55.8
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 505 VSPTVWGALLGACRIHNNIKVGEIAGERVMELE-------PNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 505 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.++...-.+...+...|++..|...++++++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566778888999999999999999999843 234567999999999999999999999998765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.062 Score=41.64 Aligned_cols=84 Identities=11% Similarity=-0.034 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHH---HHHHHHHHHccC-C-CCCchHHHHHHHHHhcCChHHH
Q 006955 486 GLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKV---GEIAGERVMELE-P-NNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A 560 (624)
.....+.+-+.+....| .|+..+--.+.+++.+..+... ++.+++.+.... | ..-...+.|+-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455666666655544 4788888888888887776655 888888888876 4 3556789999999999999999
Q ss_pred HHHHHHHHHC
Q 006955 561 KRIFAQMKEN 570 (624)
Q Consensus 561 ~~~~~~m~~~ 570 (624)
.++++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999876
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.031 Score=44.42 Aligned_cols=101 Identities=11% Similarity=0.036 Sum_probs=54.1
Q ss_pred hhHHHHHHHhcccChH------HHHHHHHHHhhhhcCCCCCc-chHHHHHHHh------hccCChHHHHHHHHHcccCCC
Q 006955 437 ITFVGVLSACSYAGLV------DQGRYYFDCMKNKYFLQPRS-AHYTCVVDLL------GRFGLIDEAMNLLNEIRADGI 503 (624)
Q Consensus 437 ~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~------~~~g~~~~A~~~~~~~~~~g~ 503 (624)
.+|-..+....+.|+. ++.+++|+++... ++|+. ..|...|... ...++.++|.++|+.+++.+-
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 4565556655555666 6666777766663 55532 1222222211 233566666666666644311
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 504 EVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 504 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
+ =..+|.....--.++|+...|.+++.+++.+.|.+
T Consensus 92 k-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 92 K-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp T-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1 14455444444456666666666666666666643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.87 Score=37.72 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHH
Q 006955 412 AYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEA 491 (624)
Q Consensus 412 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 491 (624)
...|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 4556666666666554 2455666666666666777777766665443 33444555556666665
Q ss_pred HHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 492 MNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 492 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
.++-+.....| -++.....+...|+++++.+++.+.-+.. .-+......|-.+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~--------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP--------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH--------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH--------HHHHHHHHcCcHHHHHHHHHHh
Confidence 55555444333 23444445556677777777665542211 1111122245566666666544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=1 Score=37.30 Aligned_cols=129 Identities=14% Similarity=0.108 Sum_probs=85.6
Q ss_pred HHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHH
Q 006955 378 TMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRY 457 (624)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (624)
+.....|+++.|.++.+.+ .+...|..+.......|+++-|++.|++... +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455678888888777665 3567899999999999999999999888653 3344444556677766665
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 458 YFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 458 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
+-+....+. -++.-...+.-.|++++++++|.+.-. -|... ......|-.+.|.++.+.+
T Consensus 82 la~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 554444321 234445556678999999999877652 23221 1223467778888887765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.16 Score=40.44 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=63.0
Q ss_pred CCCchhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCChh-hHHHHHHH------hcccChHHHHHHHHHHhhh
Q 006955 398 IHDIISWNSIICGLAYHGYA------EKALELFERMRLTDFKPDDI-TFVGVLSA------CSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~ll~~------~~~~g~~~~a~~~~~~~~~ 464 (624)
+.|+.+|-..+...-..|++ ++..++|++.... ++|+.. .+...+.. +...+++++|+++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777777666777 7777777777664 555532 22222221 2234667777777777765
Q ss_pred hcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCC
Q 006955 465 KYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG 502 (624)
Q Consensus 465 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (624)
.+ -.- ...|-.....-.+.|+...|.+++.+.+..+
T Consensus 89 ~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred Hh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 32 112 5556666666677788888888887777654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=94.09 E-value=3.1 Score=37.84 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=7.6
Q ss_pred CCcchhhHHHHHHHhcCC
Q 006955 267 SNIASWTNVIVGYFEMGE 284 (624)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~ 284 (624)
++..+-...+.+..+.|+
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 333344444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.26 Score=51.60 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred HHHHHHhcccCh-HHHHHHHHHHhhhhcCCCCCcchH--HHHHHHhhccC-ChHHHHHHHHHcccC------CCCc-CH-
Q 006955 440 VGVLSACSYAGL-VDQGRYYFDCMKNKYFLQPRSAHY--TCVVDLLGRFG-LIDEAMNLLNEIRAD------GIEV-SP- 507 (624)
Q Consensus 440 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~~------g~~p-~~- 507 (624)
..++..+...|+ .+.|..+++++.+. .|....+ ..++..+...+ +--+|++++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 344554555555 57788888877764 2432222 22333333332 233455555544321 0111 11
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 508 ---------TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 508 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
..+..-..-|...|+++.|..+.+++....|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222234678899999999999999999999999999999999999999999999877
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=1.9 Score=34.06 Aligned_cols=74 Identities=12% Similarity=-0.030 Sum_probs=53.5
Q ss_pred CCCcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 006955 469 QPRSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSG 542 (624)
Q Consensus 469 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 542 (624)
.|+..+--.+.+++.+..+ ..+++.++++....+-.-.....--|.-++.+.|++++|.++.+.+++.+|.|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4666666677778877764 4568888888776321112335556667789999999999999999999996643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.48 Score=38.56 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKRIFAQM 567 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~m 567 (624)
..-+.++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46678999999999999999999754
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=91.87 E-value=7.2 Score=35.36 Aligned_cols=183 Identities=7% Similarity=-0.087 Sum_probs=77.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhh----HHHHHhc--CCCCCchhHHHHHH
Q 006955 18 QRDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQG----AKEVFDG--MEVRDVVTWNSMIS 91 (624)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~--~~~~~~~~~~~l~~ 91 (624)
.+|+.+-..-+.++.+.|..+..-.+.+.+..++...-...+.++++.|.... ...++.. ...++..+-...+.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~ 113 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIE 113 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34554444455555555543333333333334555555555556655553222 2223321 12445544444444
Q ss_pred HHHhCCC-----hhHHHHHhccC-CCCCcccHHHHHHHHHcCCChHHHHHHHHhcccCChhHHHHHHHHHHhCC--ChHH
Q 006955 92 GYVCNGL-----IDEALRVFHGM-PLKDVVSWNLVIGALVNCQRMDLAESYFKEMGARDVASWTIMVNGLVREG--RIVE 163 (624)
Q Consensus 92 ~~~~~g~-----~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~ 163 (624)
++...|. ...+...+... ..+++..-...+.++...++.+....+.+.+..++...-...+.++...| ...-
T Consensus 114 aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 193 (280)
T 1oyz_A 114 STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI 193 (280)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHH
Confidence 4444331 22333333222 23555555555566666555433333333333445544444444444443 2222
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 006955 164 ARKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQ 200 (624)
Q Consensus 164 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 200 (624)
...+...+..++..+-...+.++.+.|+......+..
T Consensus 194 ~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~ 230 (280)
T 1oyz_A 194 RDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCD 230 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHH
Confidence 2222233334455555555555555554433333333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.87 E-value=0.74 Score=35.82 Aligned_cols=72 Identities=14% Similarity=-0.003 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHhhccCC---hHHHHHHHHHcccCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch
Q 006955 470 PRSAHYTCVVDLLGRFGL---IDEAMNLLNEIRADGIEV--SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV 543 (624)
Q Consensus 470 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 543 (624)
|++.+--.+.+++.+..+ ..+++.++++....+ | ....+--|.-++.+.|+++.|.++.+.+++..|.|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 566666666777776654 456788888877643 4 24455666677888899999999999998888866433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.28 E-value=4.5 Score=31.91 Aligned_cols=82 Identities=11% Similarity=-0.020 Sum_probs=60.4
Q ss_pred hHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHHHHH
Q 006955 488 IDEAMNLLNEIRADGIEVSPTVWGALLGACRIHN---NIKVGEIAGERVMELEPN-NSGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
+....+-|.+-. +-.|++.+--.+.+++.+.. +..+++.+++.+....|. .....+.|+-++.+.|++++|.++
T Consensus 22 L~~lr~qY~~E~--~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 22 LEILRQQVVSEG--GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHTT--STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444331 22577777777777776654 556888999999988874 456688999999999999999999
Q ss_pred HHHHHHCC
Q 006955 564 FAQMKENG 571 (624)
Q Consensus 564 ~~~m~~~~ 571 (624)
.+.+++..
T Consensus 100 ~d~lL~~e 107 (144)
T 1y8m_A 100 VDTLFEHE 107 (144)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99998863
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.88 E-value=2.5 Score=32.88 Aligned_cols=68 Identities=12% Similarity=-0.029 Sum_probs=55.2
Q ss_pred CCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 503 IEVSPTVWGALLGACRIHN---NIKVGEIAGERVMELEPN-NSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 503 ~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
-.|++.+--.+.+++.+.. +..+++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3677777777777776654 556788999999988874 4667899999999999999999999998775
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.58 E-value=5.1 Score=31.27 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHH
Q 006955 240 TWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVF 292 (624)
Q Consensus 240 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (624)
-....++.+...|..++-.+++..+. ++++...-.+..+|.+.|+..+|.+++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 33444445555555555555544422 333344444444444444444443333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.45 E-value=2.8 Score=30.59 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+.-+..+-++.+....+-|+|.+..+.+.+|.+.+|+..|.++++-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 55567777888777778999999999999999999999999999998875544555676664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.28 E-value=4.2 Score=39.98 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=67.9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccC--CCCcC---HHHHHHHHHHHHhcCChHHHHHHHHHHHc---cCCCCC----c
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRAD--GIEVS---PTVWGALLGACRIHNNIKVGEIAGERVME---LEPNNS----G 542 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~----~ 542 (624)
...|...|...|++.+|.+++.++... |..+. ...+..-++.|...+|+.+|..++.++.. ..+.++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356788888999999999999886532 22221 23555666778899999999999988753 223233 3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006955 543 VYLILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.+...+..+...++|.+|.+.|.+...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 477888888889999988887776643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.73 E-value=25 Score=37.90 Aligned_cols=402 Identities=11% Similarity=0.031 Sum_probs=192.9
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc-CChhHHHHHHHHHHhCCChHHHHHHhc----------
Q 006955 101 EALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA-RDVASWTIMVNGLVREGRIVEARKLFD---------- 169 (624)
Q Consensus 101 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~---------- 169 (624)
-+.++|.++..| -|..++++..+.++.+.+.++|..+.. .|...---+.-.+.+.+.-.-..++.+
T Consensus 220 ~l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~k 296 (963)
T 4ady_A 220 KSFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPA 296 (963)
T ss_dssp HHHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHH
Confidence 355555554322 466777888888899999999988753 333222222222233222111111111
Q ss_pred --cCCCCChhHHHHHHHHHHHcCC--hhHHHHHHHHccc-CCcc--cHHHHHHHHHcCCCHHHH-HHHh-hhCCC-CCcc
Q 006955 170 --KMPAKDVQAWNLMIAGYLDNGC--VGVAEDLFQKMHD-RDLT--SWKQLINGLVNSRRIDAA-ISYF-KQMPE-TCEK 239 (624)
Q Consensus 170 --~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~A-~~~~-~~~~~-~~~~ 239 (624)
++.. +..+-..-...+.+.+. +..-.. ++...+ ++.. +-.++.+++...|-..+. +... +++.+ .+..
T Consensus 297 L~~ILs-g~~~~~Lyl~FL~~~n~~d~~~l~~-~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~ 374 (963)
T 4ady_A 297 LLNILS-GLPTCDYYNTFLLNNKNIDIGLLNK-SKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWA 374 (963)
T ss_dssp HHHHTT-SHHHHHHHHHHHHHHCCCCHHHHHH-HHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHH
T ss_pred HHHHhC-CCChHHHHHHHHHhccccchhhHHH-HHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHH
Confidence 1111 21111222222223332 222222 222222 1211 334566777777644322 1111 11111 1222
Q ss_pred hHHHHH-HHHHhcCChHHHHHHHhhcCCC---C-cch--hhHHHHHHHhcCChHHHHHHHhhcCC-CC--------c--e
Q 006955 240 TWNSII-SVLIRNGLVKEAHSYLEKYPYS---N-IAS--WTNVIVGYFEMGEVGSAIKVFELMTT-RD--------V--T 301 (624)
Q Consensus 240 ~~~~ll-~~~~~~~~~~~a~~~~~~~~~~---~-~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~--~ 301 (624)
-+.++. -+....|+.+++..++....+. + ..+ -..+.-+...+|...++...+..... .+ . .
T Consensus 375 k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHH
Confidence 233333 2566788888888888877752 1 111 22233345555655566665554332 22 1 1
Q ss_pred ehhhhhhHhhcCCC-chHHHHHHHHhHHcCCCCCHHHHH--HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHH
Q 006955 302 VWNVMIFGLGENDL-GEEGLKFFVQMKESGPSPDNATFT--SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMIT 378 (624)
Q Consensus 302 ~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (624)
.-.++.-+.+..|. -+++.+.+..+.... .+...... .+...+.-.|+.+....++..+.+.. +..+...++.
T Consensus 455 ~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aal 530 (963)
T 4ady_A 455 HGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAV 530 (963)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHH
Confidence 11222223333333 246677777766532 11111122 22234556777777777877766521 2233333333
Q ss_pred H--hHhhCCHHHHHHHhccCC-CCCch-hHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccCh
Q 006955 379 M--YARCGNIQSALLEFSSVP-IHDII-SWN---SIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGL 451 (624)
Q Consensus 379 ~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 451 (624)
+ +.-.|+.+.+..+++.+. ..++. -|. ++..+|+..|+.....+++..+.+. ...+......+.-++...|+
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSS
T ss_pred HHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCC
Confidence 3 335677777666666554 23332 232 2344677888887777788888864 12222222233334445566
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCCh-HHHHHHHHHcccCCCCcCHHHHHHHHHHH
Q 006955 452 VDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLI-DEAMNLLNEIRADGIEVSPTVWGALLGAC 517 (624)
Q Consensus 452 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (624)
.+.+.++++.+.+. ..|.+..-..+.-+....|.. .+++.++..+.. .+|..+-...+.+.
T Consensus 610 ~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 610 YTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp CSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 66667777666553 234444333444444444433 678888888873 66666655555444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=0.92 Score=43.84 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCccCCc
Q 006955 509 VWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE-----NGVKKEPG 577 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 577 (624)
+...++.++...|++.++...+..+...+|-+...+..|+.+|.+.|+..+|.+.|++..+ .|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455667777889999999988998889998888899999999999999999988888654 47655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.68 E-value=29 Score=37.35 Aligned_cols=251 Identities=8% Similarity=-0.042 Sum_probs=128.6
Q ss_pred HHHhcCChHHHHHHHhhcCCC----Ccee--hhhhhhHhhcCCCchHHHHHHHHhHHcCC--C-----CCHHHHHHHHHH
Q 006955 278 GYFEMGEVGSAIKVFELMTTR----DVTV--WNVMIFGLGENDLGEEGLKFFVQMKESGP--S-----PDNATFTSVLTI 344 (624)
Q Consensus 278 ~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~~ 344 (624)
+....|+.++++.+++..... +..+ =..+.-+....|..+++..++.......- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456678888898888877642 2111 12233344555655678887777654321 0 111112222223
Q ss_pred HcCCCC-cHHHHHHHHHHHHhCCCC-CcchhHHHHHHhHhhCCHHHHHHHhccCC-CCCchhHHHHHH--HHHHcCChHH
Q 006955 345 CSDLPT-LDLGRQIHAQAIKIARNQ-FTTVSNAMITMYARCGNIQSALLEFSSVP-IHDIISWNSIIC--GLAYHGYAEK 419 (624)
Q Consensus 345 ~~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~--~~~~~~~~~~ 419 (624)
....|. -+.+...+..+....-.. .....-+|...+...|+.+....++..+. ..+......+.. ++...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 333332 234445555444422110 00111234445556677777666665443 222222222333 3446788888
Q ss_pred HHHHHHHHHHCCCCCCh-hhHH---HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHH
Q 006955 420 ALELFERMRLTDFKPDD-ITFV---GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLL 495 (624)
Q Consensus 420 a~~~~~~m~~~g~~p~~-~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (624)
+..+++.+... ++. .-|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-+....|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888763 233 2232 3344788889988888888887764 2223333333444444567666677777
Q ss_pred HHcccCCCCcCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 006955 496 NEIRADGIEVSPTVWGALLGACRIHNNI-KVGEIAGERVM 534 (624)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 534 (624)
..+.+.+ .|....-..+.-+....|+. ..+...+..+.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7666533 33332222222222333333 55666666664
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.55 E-value=9.6 Score=36.49 Aligned_cols=91 Identities=13% Similarity=-0.053 Sum_probs=54.9
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCCCch----H
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEVS-----PTVWGALLGACRIHNNIKVGEIAGERVMELE---PNNSGV----Y 544 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~----~ 544 (624)
.++..|...|++.+|.+++.++.+.=-+.| ..++..-+..|...|++.++...+.++.... +.+|.. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567778888888888777776654211111 1233444456777788888888887776522 123322 3
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHH
Q 006955 545 LILTEMYL-SCGRREDAKRIFAQM 567 (624)
Q Consensus 545 ~~l~~~~~-~~g~~~~A~~~~~~m 567 (624)
..-+..+. ..++|.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 34444555 678888887766554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.24 E-value=3.4 Score=30.19 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 417 AEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 417 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
.-+..+-++.+....+.|++....+.+.+|-+.+++..|.++|+.++.+.+ +...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHH
Confidence 345555666666666777777777777777777777777777777776532 3344555554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.38 E-value=7.4 Score=30.20 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
|.-+..+-++.+....+-|++.+....+.+|.+.+|+..|.++++-+...-.+...+|-.++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34456677777777778999999999999999999999999999998875544555677664
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.99 E-value=2.3 Score=37.77 Aligned_cols=111 Identities=15% Similarity=0.081 Sum_probs=70.3
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC----HHHHHHHHHHHHh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS----PTVWGALLGACRI 519 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~ 519 (624)
...+.|.+++++..+..-.+. .| |...-..|+..+|-.|+|+.|.+-++...+ +.|+ ...|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHH--
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHHH--
Confidence 456778888888887777764 35 777778888888888888888888887765 4454 23455555442
Q ss_pred cCChHHHHHHHHHHHc--c---CCC-CCchHHHHHHHHH--hcCChHHHHHHHHHHHHC
Q 006955 520 HNNIKVGEIAGERVME--L---EPN-NSGVYLILTEMYL--SCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~--~---~p~-~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 570 (624)
..=++... . .+. .+.-...|+.+.. ..|+.++|.++-.++.+.
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11122222 1 111 2234455555544 458888888888888654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.96 E-value=6.6 Score=41.24 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=35.2
Q ss_pred HHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERV 533 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 533 (624)
++.+...|+++.|+++.++... ..| +..+|..|..+|...|+++.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4445566777777777777665 345 3667777777777777777777665554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.63 E-value=24 Score=32.38 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=105.4
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHH--
Q 006955 245 ISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKF-- 322 (624)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 322 (624)
+......|++=+|.+.+ .++..=|.+.+++++|++++..- ...+.+.|+...|-++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence 34556678888887774 56677788888888888886432 2334556776655554
Q ss_pred --HHHhHHcCCCCCHHHHHHHHHHHcCCCCcH-HHHHHHHHHHH----hCC--CCCcchhHHHHHHhHhhCCHHHHHHHh
Q 006955 323 --FVQMKESGPSPDNATFTSVLTICSDLPTLD-LGRQIHAQAIK----IAR--NQFTTVSNAMITMYARCGNIQSALLEF 393 (624)
Q Consensus 323 --~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (624)
++-..+.+++++......++..+......+ .-..+.+.+++ .|. .-++.....+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 445566688999888888887776543211 22334444433 332 235667777888888888888887765
Q ss_pred ccCCCCCchhHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhh
Q 006955 394 SSVPIHDIISWNSIICGLAYH---GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKN 464 (624)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 464 (624)
-.-...++..+..++.-+... |...++-- . ....+-.|...|+...|..+++...+
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------F-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------H-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------H-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 422222333444443333222 22222111 1 11122234456788888887776554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.13 E-value=33 Score=33.56 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh---hhHHHHHHHhcccChHHHHHHHHHHhhhhc-CCCCC----cc
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLT--DFKPDD---ITFVGVLSACSYAGLVDQGRYYFDCMKNKY-FLQPR----SA 473 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~ 473 (624)
...|...|...|++.+|..++.++... |..+.. ..+...++.|...+++..|..++.++.... ...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888999999999999998753 322221 355666778899999999999999875321 11122 34
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 474 HYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.+...+..+...+++.+|-+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 567788888899999999988887653
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.76 E-value=9.6 Score=27.67 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=46.4
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 440 (624)
+..+...|++++|..+.+....||...|.++-. .+.|-.+++...+.++..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445667899999999999999999988877654 57788888888887887765 45444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.72 E-value=1.6 Score=42.12 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=33.8
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc-----CCCCcCHH
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA-----DGIEVSPT 508 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~ 508 (624)
+.++...|+.+++...+..+... .| +...+..+|.+|.+.|+..+|++.|++..+ .|+.|++.
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33444555566665555555542 23 555566666666666666666666555322 25555544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.99 E-value=10 Score=27.55 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=44.3
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFV 440 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 440 (624)
+..+...|++++|..+.+....||...|.++-. .+.|-.+++...+.++...| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445667889999999998888888888877654 46677778887777777665 44444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.07 E-value=14 Score=41.49 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=104.2
Q ss_pred HHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--------------------
Q 006955 375 AMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKP-------------------- 434 (624)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-------------------- 434 (624)
.++..+...+..+-+.++..-. +.++..--.+..+|...|++++|.+.|++... |+.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 3444445555555554433222 22333333444556666666666666655321 1110
Q ss_pred ---ChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-C--cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHH
Q 006955 435 ---DDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-R--SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPT 508 (624)
Q Consensus 435 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (624)
-..-|..++..+.+.+..+.+.++-+.+.+..+-.+ + ...|..+.+.+...|++++|-..+..+.... --..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~ 972 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKS 972 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHH
Confidence 112355666777777888888877776665421111 1 1257778888889999999988888777533 2355
Q ss_pred HHHHHHHHHHhcCCh------------HHHHHHHH-HHHcc-CCCC-CchHHHHHHHHHhcCChHHHHH-HHHHHH
Q 006955 509 VWGALLGACRIHNNI------------KVGEIAGE-RVMEL-EPNN-SGVYLILTEMYLSCGRREDAKR-IFAQMK 568 (624)
Q Consensus 509 ~~~~l~~~~~~~g~~------------~~a~~~~~-~~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 568 (624)
.+..|+...+..|.. ++...++. ++... .+.+ |..|..|-..+...|++..|.. +|+.+.
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 677777666555544 33333333 23332 3333 3345555555667777776665 455443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.05 E-value=9.2 Score=31.12 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=13.6
Q ss_pred HHHHhhccCChHHHHHHHHHccc
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
+..+|.+.|++++|+.+++.+..
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHCCHHHHHHHHhcCCc
Confidence 45555666666666666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 624 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 5e-06
Identities = 36/409 (8%), Positives = 103/409 (25%), Gaps = 42/409 (10%)
Query: 153 NGLVREGRIVEARKLFDKMPAKD---VQAWNLMIAGYLDNGCVGVAEDLFQKMHDRDLTS 209
+ + G A + ++ ++ L+ + + + + ++
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 210 WKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNI 269
+ N Y ++ L + + + ++
Sbjct: 67 AEAYSN---------LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 270 ASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKES 329
V + ++ + + +K
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK---------------ACYLKAI 162
Query: 330 GPSPDNATFTSVLTIC-SDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS 388
P+ A S L + + L +A+ + N N + +
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN-LGNVLKEARIFDR 221
Query: 389 ALLEF---SSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSA 445
A+ + S+ + + ++ C G + A++ + R + +P L A
Sbjct: 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNL-A 278
Query: 446 CSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV 505
+ + + ++ G I+EA+ L + +EV
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA----LEV 334
Query: 506 SPTVWGALLG---ACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMY 551
P A + ++ + + + + P + Y +
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 5e-05
Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 12/167 (7%)
Query: 78 MEVRDVVTWNSMISGYVCNGLIDEALRVF---HGMPLKDVVSWNLVIGALVNCQRMDLAE 134
++ + + ++ + + D A+ + + V + +DLA
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257
Query: 135 SYFK---EMGARDVASWTIMVNGLVREGRIVEARKLFDK---MPAKDVQAWNLMIAGYLD 188
++ E+ ++ + N L +G + EA ++ + + N + +
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317
Query: 189 NGCVGVAEDLFQK---MHDRDLTSWKQLINGLVNSRRIDAAISYFKQ 232
G + A L++K + + L + L ++ A+ ++K+
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 624 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.94 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.94 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.19 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.11 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.07 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.0 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.76 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.67 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.24 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.05 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.41 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.13 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.51 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.29 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.57 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.83 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.3e-21 Score=188.78 Aligned_cols=369 Identities=10% Similarity=0.102 Sum_probs=248.8
Q ss_pred HHHHHhCCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHH
Q 006955 152 VNGLVREGRIVEARKLFDKMPA---KDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDA 225 (624)
Q Consensus 152 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 225 (624)
...+.+.|++++|++.++++.+ .++.++..+...|.+.|++++|+..|+++.+. +..++..+..+|...|++++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 4455566666666666666542 24556666666666666666666666666542 22345555555555555555
Q ss_pred HHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhc---CCCCcee
Q 006955 226 AISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELM---TTRDVTV 302 (624)
Q Consensus 226 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~ 302 (624)
|++.+....+.+ +.+..............+....+....... .......
T Consensus 86 A~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (388)
T d1w3ba_ 86 AIEHYRHALRLK----------------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137 (388)
T ss_dssp HHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH
T ss_pred cccccccccccc----------------------------cccccccccccccccccccccccccccccccccccccccc
Confidence 555555544311 111111222222222222222222222211 1122233
Q ss_pred hhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHh
Q 006955 303 WNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYAR 382 (624)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (624)
...........+....+...+.+..... +-+...+..+...+...|+.+.|...+....+.. +.+...+..+...+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 215 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKE 215 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhc
Confidence 3334444455556666666666555442 2334555566666777777777777777766653 3344566667777888
Q ss_pred hCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHH
Q 006955 383 CGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYY 458 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 458 (624)
.|++++|+..+++.. +.+...+..+...+...|++++|+..|++..+ +.|+ ..++..+...+...|++++|.+.
T Consensus 216 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 293 (388)
T d1w3ba_ 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888777655 44566788888899999999999999999988 4555 46788888899999999999999
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 459 FDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
++..... .+.+...+..+...+...|++++|++.+++..+ +.| ++.++..+..++...|++++|...++++++++
T Consensus 294 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 294 YNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998874 334778888999999999999999999999887 455 57788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCC
Q 006955 538 PNNSGVYLILTEMYLSCGR 556 (624)
Q Consensus 538 p~~~~~~~~l~~~~~~~g~ 556 (624)
|.++.++..|+.+|.+.||
T Consensus 370 P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.4e-20 Score=185.10 Aligned_cols=325 Identities=13% Similarity=0.081 Sum_probs=252.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhcC---CCCcchhhHHHHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhhc
Q 006955 239 KTWNSIISVLIRNGLVKEAHSYLEKYP---YSNIASWTNVIVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGE 312 (624)
Q Consensus 239 ~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~ 312 (624)
..+..+..++.+.|++++|...++++. |.+..++..+..+|.+.|++++|+..+...... +...+.........
T Consensus 34 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (388)
T d1w3ba_ 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence 345555555666666666666666554 445566777778888888888888888776542 33334444445555
Q ss_pred CCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHH
Q 006955 313 NDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLE 392 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (624)
.+....+........... .................+....+...+....... +.....+..+...+...|+++.|...
T Consensus 114 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 191 (388)
T d1w3ba_ 114 AGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHH
Confidence 666666666666555543 3333444455556667777777777777766654 34456677788899999999999999
Q ss_pred hccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCC
Q 006955 393 FSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQ 469 (624)
Q Consensus 393 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 469 (624)
+++.. +.++.+|..+...+...|++++|...+++....+ ..+...+..+...+...|++++|...++++.+ +.
T Consensus 192 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~ 267 (388)
T d1w3ba_ 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQ 267 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TC
T ss_pred HHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC
Confidence 98765 4466788999999999999999999999998853 34456777788899999999999999999987 45
Q ss_pred C-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 470 P-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 470 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
| ++..+..+...+...|++++|++.++...... +.+...+..+...+...|++++|+..++++++..|.++.++..++
T Consensus 268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 346 (388)
T d1w3ba_ 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6 67889999999999999999999999987642 557888899999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 006955 549 EMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 549 ~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
.+|...|++++|.+.+++..+.
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.9e-14 Score=133.40 Aligned_cols=228 Identities=11% Similarity=0.035 Sum_probs=163.2
Q ss_pred hhhhHhhcCCCchHHHHHHHHhHHcCCCCC-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhh
Q 006955 305 VMIFGLGENDLGEEGLKFFVQMKESGPSPD-NATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARC 383 (624)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (624)
.....+.+.|++++|+..|++..+. .|+ ...|..+..++...|+++.|...+..+.+...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------------- 84 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP----------------- 84 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-----------------
Confidence 3455677888888888888887765 343 45566666666666666666666666655431
Q ss_pred CCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh----------------HHHHHHHhc
Q 006955 384 GNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDIT----------------FVGVLSACS 447 (624)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----------------~~~ll~~~~ 447 (624)
.+...|..+..+|...|++++|.+.+++.... .|+... ....+..+.
T Consensus 85 ---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
T d1fcha_ 85 ---------------DNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147 (323)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHH
T ss_pred ---------------ccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHH
Confidence 23334555555555666666666666655542 222110 001112233
Q ss_pred ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVG 526 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a 526 (624)
..+...++...+.++.+...-.++...+..+...+...|++++|+..+++.... .| ++..|..+..++...|++++|
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhH
Confidence 446678888888887764322235667888899999999999999999998763 45 577899999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
...++++++++|.++.++..++.+|...|++++|.+.|++..+.
T Consensus 226 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998774
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.6e-13 Score=127.82 Aligned_cols=268 Identities=11% Similarity=0.029 Sum_probs=196.4
Q ss_pred hhHHHHHHHhcCChHHHHHHHhhcCCC---CceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCC
Q 006955 272 WTNVIVGYFEMGEVGSAIKVFELMTTR---DVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDL 348 (624)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 348 (624)
.-.....+.+.|++++|+..|+.+.+. ++.+|..+..++...|++++|+..|.+..+.. +-+...+..+...+...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345677889999999999999998643 56788999999999999999999999988753 33456777788888999
Q ss_pred CCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 006955 349 PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMR 428 (624)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 428 (624)
|+++.|...+..+......... ......... ...+.......+..+...+.+.+|...+.+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAH-LVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGG-GCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHH-HHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999988775422111 000000000 00011111112233445566788888888877
Q ss_pred HCC-CCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-
Q 006955 429 LTD-FKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV- 505 (624)
Q Consensus 429 ~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 505 (624)
+.. -.++...+..+...+...|++++|...+++.... .| +...|..+...|...|++++|++.++++.+ +.|
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 238 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPG 238 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHH--Hhhc
Confidence 632 1234456777888899999999999999998874 46 678889999999999999999999999887 455
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch-----------HHHHHHHHHhcCChHHHHH
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV-----------YLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~ 562 (624)
++.+|..+..+|...|++++|+..|++++++.|.+... +..+..++...|+.+.+..
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 57789999999999999999999999999988876543 4556677777777765544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=4.5e-09 Score=100.28 Aligned_cols=166 Identities=16% Similarity=0.068 Sum_probs=100.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-----Ccch
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPD----DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-----RSAH 474 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~ 474 (624)
+..+...+...|+++.+...+........... ..++......+...++...+...+.+......-.. ....
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 44455666677777777777777665321111 12333444455566677766666665544211111 1233
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHc------cCCCCCchHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEV---SPTVWGALLGACRIHNNIKVGEIAGERVME------LEPNNSGVYL 545 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~ 545 (624)
+..+...+...|++++|...+++........ ....+..+..++...|++++|...+++++. ..|....++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 4555666777788888888877766532211 233455566777778888888888777764 2343455677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 006955 546 ILTEMYLSCGRREDAKRIFAQMKE 569 (624)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~m~~ 569 (624)
.++.+|...|++++|.+.+++..+
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888888888888887777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=5.5e-10 Score=104.27 Aligned_cols=223 Identities=9% Similarity=0.099 Sum_probs=126.4
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhC-CHHHHHHHhccCC---CCCchhHHHHHHHHH
Q 006955 337 TFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCG-NIQSALLEFSSVP---IHDIISWNSIICGLA 412 (624)
Q Consensus 337 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 412 (624)
.++.+...+.+.+..++|...++.+++.. |.+...++....++...| ++++|+..++++. +.+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 44445555666677777777777777753 233344455555555544 3666666666654 335556666666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCC---
Q 006955 413 YHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGL--- 487 (624)
Q Consensus 413 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--- 487 (624)
..|++++|+..++++.+ +.|+ ...|..+...+...|++++|...++++.+ +.| +...|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred hhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccch
Confidence 66777777777766666 3333 45666666666666666666666666665 334 45556555555444333
Q ss_pred ---hHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC--chHHHHHHHHHhc--CChHH
Q 006955 488 ---IDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNS--GVYLILTEMYLSC--GRRED 559 (624)
Q Consensus 488 ---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~ 559 (624)
+++|++.+.++++ ..| +...|..+...+.. ...+++...++.+.++.|... ..+..++.+|... +..+.
T Consensus 199 ~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence 4566666666555 233 45555555544433 334556666666666555432 2344455555432 44555
Q ss_pred HHHHHHHHH
Q 006955 560 AKRIFAQMK 568 (624)
Q Consensus 560 A~~~~~~m~ 568 (624)
+...+++..
T Consensus 276 ~~~~~~ka~ 284 (315)
T d2h6fa1 276 KEDILNKAL 284 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.6e-09 Score=98.37 Aligned_cols=223 Identities=13% Similarity=-0.013 Sum_probs=136.8
Q ss_pred CCCchHHHHHHHHhHHcCC-CC--CHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHH
Q 006955 313 NDLGEEGLKFFVQMKESGP-SP--DNATFTSVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSA 389 (624)
Q Consensus 313 ~~~~~~a~~~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (624)
..+.+.++.-+++...... .+ ...+|..+..++.+.|+++.|...|...++.. |.++.+++.+..+|.+.|++++|
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHh
Confidence 3445566666666654321 11 12345555667777888888888888777764 34566677788888888888888
Q ss_pred HHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhh
Q 006955 390 LLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 390 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
+..|+++. +.+..+|..+..+|...|++++|...+++..+. .|+. .....+..++...+..+....+......
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 167 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-
Confidence 88888776 335667888888888999999999999988874 4443 3333333444555555555555554443
Q ss_pred cCCCCCcchHHHHHHHhhccCC----hHHHHHHHHHcccCCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 466 YFLQPRSAHYTCVVDLLGRFGL----IDEAMNLLNEIRADGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 466 ~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
..+....++ ++..+..... .+.+...+..... ..|+ ..+|..+...+...|++++|...+++++..+|.+
T Consensus 168 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 168 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred --cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 223333332 2233322222 2222222221111 2232 3466677788888999999999999999988866
Q ss_pred CchH
Q 006955 541 SGVY 544 (624)
Q Consensus 541 ~~~~ 544 (624)
...|
T Consensus 243 ~~~~ 246 (259)
T d1xnfa_ 243 FVEH 246 (259)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 4433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3.9e-08 Score=93.52 Aligned_cols=159 Identities=8% Similarity=-0.034 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh----hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC--CcchH
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLT--DFKPDD----ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP--RSAHY 475 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~ 475 (624)
+......+...++...+...+.+.... ...... ..+..+...+...|+++.|...++.......-.+ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 334445566667777777666655431 111111 2344455567778888888888887765321111 12344
Q ss_pred HHHHHHhhccCChHHHHHHHHHccc----CCCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---------C
Q 006955 476 TCVVDLLGRFGLIDEAMNLLNEIRA----DGIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN---------S 541 (624)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---------~ 541 (624)
..+...+...|++++|.+.++++.. .+..|+ ...+..+..++...|++++|...+++++++.+.. .
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 5677888889999999998887653 234454 4467777888899999999999999988754422 1
Q ss_pred chHHHHHHHHHhcCChHHHHH
Q 006955 542 GVYLILTEMYLSCGRREDAKR 562 (624)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~ 562 (624)
..+..+...+...++.+++..
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHH
Confidence 223444555556666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=3.6e-10 Score=107.14 Aligned_cols=233 Identities=12% Similarity=0.006 Sum_probs=161.1
Q ss_pred hcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHH
Q 006955 311 GENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDL--PTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQS 388 (624)
Q Consensus 311 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (624)
...|++++|+.+++...+.. +-+...+.....++... ++.+.+...+..+.+...+.....+......+...++.+.
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 34455677888888776652 22334444444444444 4467788888887776443333333445567777899999
Q ss_pred HHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhh
Q 006955 389 ALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNK 465 (624)
Q Consensus 389 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 465 (624)
|+..++.+. +.+..+|+.+..++...|++++|...+++..+ +.|+.. .+...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 999998887 34567888888888898888877665554443 122221 1222233445556666766666653
Q ss_pred cCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 466 YFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 466 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
-+++...+..++..+...|+.++|...+.+... ..| +...+..+..++...|++++|...++++++++|.+...|
T Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 233666677788888889999999999999886 345 466888888999999999999999999999999888888
Q ss_pred HHHHHHHHh
Q 006955 545 LILTEMYLS 553 (624)
Q Consensus 545 ~~l~~~~~~ 553 (624)
..|...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888777664
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=7.9e-09 Score=96.22 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=143.2
Q ss_pred ehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCH-HHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCCCcchhHHHHHH
Q 006955 302 VWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDN-ATFTSVLTICSDLP-TLDLGRQIHAQAIKIARNQFTTVSNAMITM 379 (624)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (624)
.++.+...+.+.+.+++|+.+++++.+. .|+. ..|+....++...| ++++|...++.+.+.. +-+..++..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4555666677888889999999888875 4554 45566666666665 4788888888888765 3456677777888
Q ss_pred hHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhc------cc
Q 006955 380 YARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACS------YA 449 (624)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~------~~ 449 (624)
+.+.|++++|+..++++. +.+...|..+...+...|++++|++.++++.+ +.|+ ...|+.+...+. ..
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchh
Confidence 888899999998888876 45677888888888888999999999998888 4554 345654444332 33
Q ss_pred ChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHH
Q 006955 450 GLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGAC 517 (624)
Q Consensus 450 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 517 (624)
+.+++|.+.+.++.+. .| +...|..+...+...| .+++.+.++...+....+ ++..+..++..|
T Consensus 200 ~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 4577888888887763 46 6777777766655444 566777776665522121 344555555444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1.5e-09 Score=98.47 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=139.8
Q ss_pred chhHHHHHHhHhhCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHh
Q 006955 371 TVSNAMITMYARCGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSAC 446 (624)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 446 (624)
.++..+..+|.+.|++++|+..|++.. +.++.+|+.+..+|...|++++|+..|+++.+ +.|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 355567889999999999999999876 55778999999999999999999999999998 4555 45788888899
Q ss_pred cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHH----hcC
Q 006955 447 SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACR----IHN 521 (624)
Q Consensus 447 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g 521 (624)
...|++++|...+++..+. .| +......+...+.+.+..+.+..+....... .++...+. ++..+. ..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHH
Confidence 9999999999999999874 35 4444444455555666655555555544432 22222222 222222 223
Q ss_pred ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 522 NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 522 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
..+.+...+.......|....++..++.+|...|++++|.+.+++..+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 34444444444455667667789999999999999999999999887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=2.2e-08 Score=93.10 Aligned_cols=184 Identities=10% Similarity=0.042 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCC--CC-C-chhHHHHHHHHHHcCChHHHHHHHHHH
Q 006955 352 DLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVP--IH-D-IISWNSIICGLAYHGYAEKALELFERM 427 (624)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 427 (624)
+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+++. .| + ...|...+..+.+.|+.+.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3444444444443333333344444444444555555555544432 11 1 123444444444555555555555554
Q ss_pred HHCCCCCChhhHHHHHH-HhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCC-CCc
Q 006955 428 RLTDFKPDDITFVGVLS-ACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADG-IEV 505 (624)
Q Consensus 428 ~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p 505 (624)
.+.+ +.+...|..... -+...|+.+.|..+|+.+.+.. +.++..|...+..+...|+.+.|..+|++..... .+|
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4421 111122221111 1222344455555555544431 1134444444555555555555555555443321 122
Q ss_pred C--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 006955 506 S--PTVWGALLGACRIHNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 506 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 538 (624)
+ ...|...+.--...|+.+.+..+++++.+..|
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 22444444444444555555555555544444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=2.8e-08 Score=92.42 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=145.7
Q ss_pred CCHHHHHHHhccCC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHH
Q 006955 384 GNIQSALLEFSSVP----IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 384 g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
+..++|..+|++.. +.+...|...+..+...|+++.|..+++++.+.........|...+..+.+.|+.+.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45577777777643 34566788888999999999999999999987432222347888889999999999999999
Q ss_pred HHhhhhcCCCC-CcchHHHHHHH-hhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDL-LGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELE 537 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 537 (624)
+++.+. .| +...|...+.. +...|+.+.|.++|+.+... .+.++..|..++......|+++.|..+|+++++..
T Consensus 158 ~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 998874 34 45555554443 34468999999999998874 24467899999999999999999999999999987
Q ss_pred CCCCc----hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 538 PNNSG----VYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 538 p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
|.++. .|...+..-...|+.+.+.++++++.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76554 5777788778889999999999998765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=4.9e-08 Score=75.46 Aligned_cols=101 Identities=13% Similarity=0.016 Sum_probs=55.3
Q ss_pred HhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCCh
Q 006955 445 ACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNI 523 (624)
Q Consensus 445 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (624)
.+...|++++|+..|+++.+. .| ++..|..+..+|...|++++|+..+.+..+.+ +.++..|..+..++...|++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 344555555555555555542 24 45555555555555666666666665555432 23455555555555556666
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHH
Q 006955 524 KVGEIAGERVMELEPNNSGVYLILTE 549 (624)
Q Consensus 524 ~~a~~~~~~~~~~~p~~~~~~~~l~~ 549 (624)
++|+..++++++..|.++..+..+..
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66666666666666655555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=3.7e-08 Score=85.09 Aligned_cols=115 Identities=9% Similarity=-0.088 Sum_probs=76.1
Q ss_pred CChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHH
Q 006955 434 PDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWG 511 (624)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 511 (624)
|+...+......+.+.|++++|+..|+++.+. .| ++..|..+..+|.+.|++++|+..|+++++ +.| ++..|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHH
Confidence 55556666666777777777777777776663 35 566677777777777777777777777665 445 355667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006955 512 ALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLS 553 (624)
Q Consensus 512 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 553 (624)
.+..++...|++++|...+++++++.|.+...+...+..+..
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777777777777777777777666555554444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=4.8e-08 Score=75.50 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=84.6
Q ss_pred HHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006955 478 VVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRR 557 (624)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 557 (624)
-...+...|++++|+..|++.++.. +.++..|..+..++...|++++|+..++++++++|.++..|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 4567889999999999999998742 446889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCC
Q 006955 558 EDAKRIFAQMKENG 571 (624)
Q Consensus 558 ~~A~~~~~~m~~~~ 571 (624)
++|...+++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=2.2e-08 Score=94.43 Aligned_cols=229 Identities=6% Similarity=-0.032 Sum_probs=155.5
Q ss_pred cCChHHHHHHHhhcCC---CCceehhhhhhHhhcCC--CchHHHHHHHHhHHcCCCCCHHHHH-HHHHHHcCCCCcHHHH
Q 006955 282 MGEVGSAIKVFELMTT---RDVTVWNVMIFGLGEND--LGEEGLKFFVQMKESGPSPDNATFT-SVLTICSDLPTLDLGR 355 (624)
Q Consensus 282 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~ 355 (624)
.|++++|+.+++.+.. .+...|..+..++...+ ++++|+..+.++.+.. +++...+. .....+...+..+.|.
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 3446667777766643 24555665655554444 4678888888877653 23344433 3445666778888888
Q ss_pred HHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006955 356 QIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD 435 (624)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 435 (624)
..++.+.+.. +.+...++.+..++.+.|++++|...++....-.+... .....+...+..+++...+....... +++
T Consensus 165 ~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~ 241 (334)
T d1dcea1 165 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEP 241 (334)
T ss_dssp HHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cch
Confidence 8887776654 34556677788888999998888777766553222222 22334455677777888888877742 334
Q ss_pred hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-HHHHHHH
Q 006955 436 DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-PTVWGAL 513 (624)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 513 (624)
...+..+...+...|+.++|...+.+.... .| +...+..++..|...|++++|++.++++.+ +.|+ ...|..|
T Consensus 242 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L 316 (334)
T d1dcea1 242 LFRCELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL 316 (334)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHH
Confidence 445556666777788999999999887763 45 677888899999999999999999999987 5674 5577777
Q ss_pred HHHHHh
Q 006955 514 LGACRI 519 (624)
Q Consensus 514 ~~~~~~ 519 (624)
...+..
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=3.2e-07 Score=77.96 Aligned_cols=125 Identities=13% Similarity=-0.059 Sum_probs=92.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC
Q 006955 408 ICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG 486 (624)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 486 (624)
...+...|++++|++.|.++ .+|+..++..+..++...|++++|.+.|++..+ +.| ++..|..+..+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhc
Confidence 45567788888888888764 356667777788888888888888888888887 446 6777888888888888
Q ss_pred ChHHHHHHHHHcccCCCC--------------cC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 006955 487 LIDEAMNLLNEIRADGIE--------------VS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPN 539 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~--------------p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 539 (624)
++++|++.|++.+...-. ++ ..++..+..++...|++++|.+.+++++++.|.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 888888888876643100 11 234556667777888888888888888888774
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.63 E-value=4.7e-08 Score=74.83 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=83.1
Q ss_pred HHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006955 476 TCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSC 554 (624)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 554 (624)
-.+...+.+.|++++|+..+++.+. ..| ++..|..+..++...|++++|+..++++++++|.++.++..|+.+|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 3467778899999999999999887 456 5889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHH
Q 006955 555 GRREDAKRIFAQMK 568 (624)
Q Consensus 555 g~~~~A~~~~~~m~ 568 (624)
|++++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.1e-07 Score=78.24 Aligned_cols=116 Identities=9% Similarity=-0.061 Sum_probs=96.6
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH 520 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 520 (624)
...|.+.|++++|...|+++.+. .| +...|..+..+|...|++++|++.|+++++. .| +...|..++.++...
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHc
Confidence 44677889999999999998874 46 7888899999999999999999999999874 45 567999999999999
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHH--hcCChHHHHHH
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEMYL--SCGRREDAKRI 563 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 563 (624)
|++++|...++++.++.|.++..+..+..+.. ..+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999988887776643 44556666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=4.9e-08 Score=84.28 Aligned_cols=97 Identities=10% Similarity=-0.080 Sum_probs=77.8
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHH
Q 006955 399 HDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYT 476 (624)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 476 (624)
|+...+......|...|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|+..++++.+ +.| ++..|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHH
Confidence 44555666777888889999999999888874 444 45777888888889999999999988876 567 577888
Q ss_pred HHHHHhhccCChHHHHHHHHHccc
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.+..+|.+.|++++|+..|+++.+
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888889999999999998888765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.1e-07 Score=73.56 Aligned_cols=108 Identities=14% Similarity=-0.029 Sum_probs=85.4
Q ss_pred HHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCcC-HHHHHHHH
Q 006955 440 VGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEVS-PTVWGALL 514 (624)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 514 (624)
..++..+...+++++|.+.|++.... .| ++.++..+..++.+.+ ++++|+++++++....-.|+ ..+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 45677778889999999999999874 45 7788888999998755 45579999999887432333 23678888
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 515 GACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 515 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
.+|...|++++|+..|+++++++|.+..+...+..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 999999999999999999999999887666555433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=7.5e-07 Score=75.57 Aligned_cols=145 Identities=13% Similarity=-0.030 Sum_probs=113.5
Q ss_pred HHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHH
Q 006955 377 ITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQG 455 (624)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 455 (624)
...+...|+++.|++.|+++.++++.+|..+..+|...|++++|+..|++..+ +.|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 44567889999999999999999999999999999999999999999999998 45654 6888888899999999999
Q ss_pred HHHHHHhhhhcCCCCC----------------cchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh
Q 006955 456 RYYFDCMKNKYFLQPR----------------SAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI 519 (624)
Q Consensus 456 ~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (624)
...|++..... +++ ..++..+..+|.+.|++++|.+.+...... .|++ .
T Consensus 90 ~~~~~kAl~~~--~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~-----------~ 154 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP-----------R 154 (192)
T ss_dssp HHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG-----------G
T ss_pred HHHHHHHHHhC--ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc-----------c
Confidence 99999887531 111 234556788899999999999999998873 4442 3
Q ss_pred cCChHHHHHHHHHHHccCC
Q 006955 520 HNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 520 ~g~~~~a~~~~~~~~~~~p 538 (624)
++..+.|+..+.+.....|
T Consensus 155 ~~~~~~Al~~~~~~~~~~~ 173 (192)
T d1hh8a_ 155 HSKIDKAMECVWKQKLYEP 173 (192)
T ss_dssp GGHHHHHHHHHHTTCCCCC
T ss_pred hHHHHHHHHHHHhhhhCCc
Confidence 3444555555555544444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=6.3e-07 Score=73.59 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=84.8
Q ss_pred HHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006955 477 CVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCG 555 (624)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 555 (624)
.....|.+.|++++|+..|+++++. .| +...|..+..+|...|++++|...|+++++++|.++.+|..++.+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3456788999999999999999884 45 67889999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCC
Q 006955 556 RREDAKRIFAQMKENG 571 (624)
Q Consensus 556 ~~~~A~~~~~~m~~~~ 571 (624)
++++|...+++.....
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999987763
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=9.4e-07 Score=80.90 Aligned_cols=132 Identities=11% Similarity=-0.056 Sum_probs=60.3
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCc-----
Q 006955 404 WNSIICGLAY-HGYAEKALELFERMRLT----DFKPD-DITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRS----- 472 (624)
Q Consensus 404 ~~~l~~~~~~-~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----- 472 (624)
+..+...|.. .|++++|++.+++..+. +..+. ..++..+...+...|++++|...++++.....-.+..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 3344444433 46666666666655431 11111 1244555556666666666666666655431111100
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCcC------HHHHHHHHHHHHh--cCChHHHHHHHHHHHccC
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS------PTVWGALLGACRI--HNNIKVGEIAGERVMELE 537 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~ 537 (624)
..+...+..+...|+++.|.+.+++..+. .|+ ......++.++.. .+.+++|...|+++.+++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 11223344445566666666666666542 221 1233444444432 233555555555444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.8e-07 Score=72.32 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=80.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHccCCCC--CchHHHHHHH
Q 006955 476 TCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH---NNIKVGEIAGERVMELEPNN--SGVYLILTEM 550 (624)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 550 (624)
..+++.+...+++++|.+.|++....+ +.++.++..+..++... +++++|+.+++++++.+|.+ ..++..|+.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457788889999999999999998853 45788999999988764 56668999999999988754 3478999999
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 006955 551 YLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~~~~A~~~~~~m~~~~ 571 (624)
|.+.|++++|.+.|+++.+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 999999999999999998853
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=8.5e-07 Score=81.20 Aligned_cols=191 Identities=9% Similarity=-0.047 Sum_probs=125.4
Q ss_pred HHHHhHhhCCHHHHHHHhccCC-----CCC----chhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHH
Q 006955 376 MITMYARCGNIQSALLEFSSVP-----IHD----IISWNSIICGLAYHGYAEKALELFERMRLTDF---KPD--DITFVG 441 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~ 441 (624)
....|...|++++|.+.|.+.. ..+ ..+|..+..+|.+.|++++|.+.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 3455666677777766666543 111 24678888889999999999999887655211 111 235555
Q ss_pred HHHHhc-ccChHHHHHHHHHHhhhhc---CCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCC-----cCH-HHH
Q 006955 442 VLSACS-YAGLVDQGRYYFDCMKNKY---FLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIE-----VSP-TVW 510 (624)
Q Consensus 442 ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-----p~~-~~~ 510 (624)
+...|. ..|++++|.+.+++..+-. +..+ ...++..++..|...|++++|++.++++...... ... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999999876531 1111 2445778899999999999999999997653211 111 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCCc-----hHHHHHHHHHh--cCChHHHHHHHHH
Q 006955 511 GALLGACRIHNNIKVGEIAGERVMELEPNNSG-----VYLILTEMYLS--CGRREDAKRIFAQ 566 (624)
Q Consensus 511 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~ 566 (624)
...+..+...|++..|...++++.+..|..+. .+..|+.++.. .+.+++|+..|++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555677899999999999999999885433 34556666655 3457888887753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2.3e-06 Score=70.90 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhh
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLG 483 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 483 (624)
+......+.+.|++++|+..|++.... .|....+ ..... .....+ ...+|+.+..+|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~---------~~~~~---~~~~~~--------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SNEEA---QKAQAL--------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CSHHH---HHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc---------chHHH---hhhchh--------HHHHHHHHHHHHH
Confidence 444556677788888888888877652 1111000 00000 000000 1235677888999
Q ss_pred ccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006955 484 RFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDA 560 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 560 (624)
+.|++++|+..+++.++ +.| ++..|..+..++...|++++|...|+++++++|.|+.+...+..+....+...+.
T Consensus 74 k~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhh--ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 455 6889999999999999999999999999999999999999998887766655544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2.2e-06 Score=67.03 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=78.6
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCch-------HHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGV-------YLIL 547 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l 547 (624)
+..+...+.+.|++++|++.|++.++.+ +.++.++..+..+|...|+++.|+..++++++++|.++.. |..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3456778889999999999999988843 3468888999999999999999999999999998877664 5556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC
Q 006955 548 TEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+..+...+++++|++.+++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66778888999999999877553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=5.1e-06 Score=68.70 Aligned_cols=64 Identities=16% Similarity=0.005 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+|..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3567788889999999999999999999999999999999999999999999999999987753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.19 E-value=1.5e-05 Score=64.43 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++..+..+|...|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4667788888999999999999999999999999999999999999999999999999887753
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.13 E-value=1.5e-05 Score=65.65 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=77.8
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.+|+.+..+|.+.|++++|+..+++.+... +.+...|..+..++...|++++|...++++++++|.++.+...+..+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456678888999999999999999988742 4467889999999999999999999999999999999999888888877
Q ss_pred hcCChH-HHHHHHHHHH
Q 006955 553 SCGRRE-DAKRIFAQMK 568 (624)
Q Consensus 553 ~~g~~~-~A~~~~~~m~ 568 (624)
..+... ...+++..|-
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 666554 3445555553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=1.2e-05 Score=66.41 Aligned_cols=131 Identities=10% Similarity=-0.036 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHh
Q 006955 404 WNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLL 482 (624)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 482 (624)
+......+...|++++|+..|+++.+. .+.. ... ... .... .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~-------~~~---~~~-------~~~~---~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS-------RAA---AED-------ADGA---KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH-------HHH---SCH-------HHHG---GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh-------hhh---hhh-------HHHH---HhChhhHHHHHHHHHHH
Confidence 334456677888888888888876541 0000 000 000 0001 1234 566778889999
Q ss_pred hccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRRE 558 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 558 (624)
.+.|++++|+..++++++ +.| ++..|..+..++...|+++.|+..|+++++++|.++.+...+..+........
T Consensus 88 ~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 445 57899999999999999999999999999999999988888887765544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=1.1e-05 Score=66.61 Aligned_cols=66 Identities=8% Similarity=-0.010 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 506 SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
....+..+..++...|++++|+..+.++++++|.++.+|..++.+|...|++++|.+.|++..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 345677788889999999999999999999999999999999999999999999999999998753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.11 E-value=0.00023 Score=63.41 Aligned_cols=227 Identities=11% Similarity=-0.024 Sum_probs=138.8
Q ss_pred ceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhCCCCCcchhHH
Q 006955 300 VTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSD----LPTLDLGRQIHAQAIKIARNQFTTVSNA 375 (624)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (624)
+..+..|...+...+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3345556666667777888888887776655 22223223333322 233444444444433322
Q ss_pred HHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHhcccC
Q 006955 376 MITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAY----HGYAEKALELFERMRLTDFKPDDITFV-GVLSACSYAG 450 (624)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g 450 (624)
++.....+...+.. ..+.+.|...++...+.|..+....+. ..........
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR 124 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccc
Confidence 23333333333332 456777888888877765322221111 1111223345
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCC
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNN 522 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~ 522 (624)
....+...+...... .+...+..|...|.. ..+...+...++...+.| ++.....|...+.. ..+
T Consensus 125 ~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC
T ss_pred hhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccc
Confidence 667777777765542 356666677777764 457788888888887644 45555556555543 568
Q ss_pred hHHHHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 523 IKVGEIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 523 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
.+.|...|+++.+.. ++..+..|+.+|.. ..++++|.++|++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999999998875 57788899999986 4489999999999988874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.07 E-value=1e-05 Score=65.43 Aligned_cols=127 Identities=9% Similarity=-0.128 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHh
Q 006955 403 SWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLL 482 (624)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 482 (624)
.+......+.+.|++.+|+..|++.... .|.... ....... .... .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~---~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILL---DKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHH---HHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHH---Hhhh-----hHHHHHHhhHHHHH
Confidence 4555666778888888888888887763 111100 0000000 0000 01234677889999
Q ss_pred hccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006955 483 GRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYL 552 (624)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 552 (624)
.+.|++++|++.++++++ +.| +..+|..+..++...|++++|...|+++++++|.|+.+...+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999887 445 67899999999999999999999999999999999888777765543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.8e-06 Score=85.56 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHH-HHHHHHHHcCChHHHHHHHHHHHHCC
Q 006955 353 LGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWN-SIICGLAYHGYAEKALELFERMRLTD 431 (624)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g 431 (624)
+|.++++++.+..... ...+..+..+|...|++++| ++++...|+.... .-+....-...+..+.+.++...+..
T Consensus 4 eA~q~~~qA~~l~p~~-a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~ 79 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADM-TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR 79 (497)
T ss_dssp HHHHHHHHHHHHHGGG-TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHcCCCC-HHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455555555432211 22233355666666666665 3333311221000 00011111112445666666666544
Q ss_pred CCCChhhHHHHHHHh--cccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC-H
Q 006955 432 FKPDDITFVGVLSAC--SYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS-P 507 (624)
Q Consensus 432 ~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~ 507 (624)
..++.......+..+ ...+.++.+...++... ++.| +...+..+...+.+.|+.++|...++.... ++ .
T Consensus 80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~~ 152 (497)
T d1ya0a1 80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQ 152 (497)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHHHH----HHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC----CCHH
Confidence 444443322222211 12344445544444332 3445 566677788888888888888887766552 32 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.++..+...+...|++++|...|+++.++.|.++..|..|+.+|...|+..+|...|.+.....
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 4677788888889999999999999999999999999999999999999999998888776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.00061 Score=61.94 Aligned_cols=141 Identities=10% Similarity=0.050 Sum_probs=82.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCC
Q 006955 19 RDTVTWNVMIRGYFKNGFLDNAMCLFNQMPERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGL 98 (624)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 98 (624)
||..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+...+.....
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcH
Confidence 565556666677778888888888887554 35557777778888888888776553 55677777777777766
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHcCCChHHHHHHHHhccc---CChhHHHHHHHHHHhCCChHHHHHHh
Q 006955 99 IDEALRVFHGMPLKDVVSWNLVIGALVNCQRMDLAESYFKEMGA---RDVASWTIMVNGLVREGRIVEARKLF 168 (624)
Q Consensus 99 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 168 (624)
..-+.- .......++.....++..|-..|.++....+++.... .+...++.++..|++.+ .++..+.+
T Consensus 85 ~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 85 FRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp HHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 655432 2222234444556677888888888888888886643 35566777777777754 34444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.01 E-value=7.4e-06 Score=62.13 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=53.7
Q ss_pred HHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhc
Q 006955 443 LSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIH 520 (624)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 520 (624)
...+.+.|++++|...++++.+. .| ++..|..+..++.+.|++++|+..+++..+ +.| ++..|..+..+|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHC
Confidence 34455566666666666666653 34 466666666666666666666666666665 334 355666666666666
Q ss_pred CChHHHHHHHHHH
Q 006955 521 NNIKVGEIAGERV 533 (624)
Q Consensus 521 g~~~~a~~~~~~~ 533 (624)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0021 Score=58.27 Aligned_cols=292 Identities=9% Similarity=0.046 Sum_probs=149.0
Q ss_pred CCCcchHHHHHHHHHcCCChhhHHHHHhcCCCCCchhHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHcCC
Q 006955 49 ERDMFTYNTVIAGLMQSDNVQGAKEVFDGMEVRDVVTWNSMISGYVCNGLIDEALRVFHGMPLKDVVSWNLVIGALVNCQ 128 (624)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (624)
.++..--..++..|-+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+. .++.+|..+...+....
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCc
Confidence 3455555566777778888888888887554 3677778888888888888877655 45667888888888776
Q ss_pred ChHHHHHHHHhcccCChhHHHHHHHHHHhCCChHHHHHHhccCC---CCChhHHHHHHHHHHHcCChhHHHHHHHHcccC
Q 006955 129 RMDLAESYFKEMGARDVASWTIMVNGLVREGRIVEARKLFDKMP---AKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR 205 (624)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 205 (624)
....+.- .......++.....++..|-..|.++....+++... ..+...++-++..|++.+ .++-.+.++.. .
T Consensus 84 e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--s 159 (336)
T d1b89a_ 84 EFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--W 159 (336)
T ss_dssp CHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--S
T ss_pred HHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--c
Confidence 6654422 122222355556678888888888888888887654 346667788888887764 33333333332 2
Q ss_pred CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchHHHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCCh
Q 006955 206 DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTWNSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEV 285 (624)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (624)
+......++..|.+.+-+.++.-++..+ |.++.|..+.-.- +++..-....+..+.+.++.
T Consensus 160 ~~y~~~k~~~~c~~~~l~~elv~Ly~~~------------------~~~~~A~~~~i~~-~~~~~~~~~f~e~~~k~~N~ 220 (336)
T d1b89a_ 160 SRVNIPKVLRAAEQAHLWAELVFLYDKY------------------EEYDNAIITMMNH-PTDAWKEGQFKDIITKVANV 220 (336)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHT------------------TCHHHHHHHHHHS-TTTTCCHHHHHHHHHHCSST
T ss_pred ccCCHHHHHHHHHHcCChHHHHHHHHhc------------------CCHHHHHHHHHHc-chhhhhHHHHHHHHHccCCh
Confidence 2233344455555555554444444443 3333332221110 11222223334444444444
Q ss_pred HHHHHHHhhcCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 006955 286 GSAIKVFELMTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIA 365 (624)
Q Consensus 286 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 365 (624)
+...++.....+.++...+.++......-++.++++.++ +.+++.....++......|
T Consensus 221 e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~----------------------k~~~l~li~p~Le~v~~~n 278 (336)
T d1b89a_ 221 ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS----------------------KVKQLPLVKPYLRSVQNHN 278 (336)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHH----------------------HTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHH----------------------hcCCcHHHHHHHHHHHHcC
Confidence 433333222221123333444444444444444444332 2334444445555544433
Q ss_pred CCCCcchhHHHHHHhHhhCCHHHHHHHhcc
Q 006955 366 RNQFTTVSNAMITMYARCGNIQSALLEFSS 395 (624)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (624)
+..+.+++...|...++.+.-....+.
T Consensus 279 ---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 279 ---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 235677788888888876554444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.00 E-value=2.2e-05 Score=64.62 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 508 TVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 508 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
.+|..+..+|...|++++|+..++++++++|.++.+|..++.+|...|++++|.+.|++..+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566677888999999999999999999999999999999999999999999999999988763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.97 E-value=6.9e-06 Score=65.64 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=73.3
Q ss_pred ccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhc----------cCChHHHHHHHHHcccCCCCc-CHHHHHHHHH
Q 006955 448 YAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGR----------FGLIDEAMNLLNEIRADGIEV-SPTVWGALLG 515 (624)
Q Consensus 448 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 515 (624)
+.+.+++|+..++...+ +.| ++..+..+..+|.. .+.+++|++.|+++++ +.| ++.+|..+..
T Consensus 9 r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 34456666666666655 234 45555555555543 2345667777777766 344 4567777776
Q ss_pred HHHhcC-----------ChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 006955 516 ACRIHN-----------NIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 516 ~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 572 (624)
+|...| .+++|...|+++++++|.+...+..|... .+|.+++.+..+.|+
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 665543 46889999999999999887766666544 566777777777664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.97 E-value=2e-05 Score=65.28 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=84.7
Q ss_pred HHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhc
Q 006955 441 GVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIH 520 (624)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (624)
.........|++++|.+.|.....-+ +....- . + ..+.|-. ..-..+. ......+..+..++...
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~----~-~-~~~~w~~--~~r~~l~----~~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVLD----D-L-RDFQFVE--PFATALV----EDKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTTG----G-G-TTSTTHH--HHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---cccccc----c-C-cchHHHH--HHHHHHH----HHHHHHHHHHHHHHHHC
Confidence 33446677888999988888887642 322100 0 0 0111111 1111111 11234677888999999
Q ss_pred CChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCccCC
Q 006955 521 NNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKE-----NGVKKEP 576 (624)
Q Consensus 521 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 576 (624)
|++++|...++++++.+|.+...|..++.+|...|++++|++.|+++.+ .|+.+.+
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 9999999999999999999999999999999999999999999999854 5665443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.4e-05 Score=62.35 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=58.4
Q ss_pred HHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcC--------HHHHHH
Q 006955 442 VLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVS--------PTVWGA 512 (624)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~~~~ 512 (624)
+...+...|++++|+..|.+..+. .| ++..+..+..+|.+.|++++|++.++++++ +.|+ ..+|..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH
Confidence 444555666666666666666652 34 456666666666667777777766666554 2221 124455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 513 LLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 513 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
+...+...+++++|...+++.+...| ++...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~ 115 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL 115 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHH
Confidence 55666667777777777777776665 34333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.76 E-value=5.2e-05 Score=61.35 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=66.7
Q ss_pred HHHhhccCChHHHHHHHHHcccCCC-Cc----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------
Q 006955 479 VDLLGRFGLIDEAMNLLNEIRADGI-EV----------SPTVWGALLGACRIHNNIKVGEIAGERVMELEPNN------- 540 (624)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~-~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------- 540 (624)
...+...|++++|++.|++.++..- .| ...+|+.+..+|...|++++|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 4445566777777777777654100 01 13567788888899999999999999888754321
Q ss_pred ----CchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 541 ----SGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 541 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
..++..++.+|...|++++|.+.|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225788899999999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=4.3e-05 Score=55.59 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=60.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHcccC-----CCCcC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 475 YTCVVDLLGRFGLIDEAMNLLNEIRAD-----GIEVS-PTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+-.+...+.+.|++++|+..|++..+. ...++ ..++..|..++.+.|++++|...++++++++|.++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345777888889999998888876542 11222 568888999999999999999999999999999998888875
Q ss_pred HH
Q 006955 549 EM 550 (624)
Q Consensus 549 ~~ 550 (624)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.66 E-value=0.0051 Score=54.20 Aligned_cols=230 Identities=10% Similarity=-0.048 Sum_probs=130.9
Q ss_pred CcchhhHHHHHHHhcCChHHHHHHHhhcCCC-CceehhhhhhHhhc----CCCchHHHHHHHHhHHcCCCCCHHHHHHHH
Q 006955 268 NIASWTNVIVGYFEMGEVGSAIKVFELMTTR-DVTVWNVMIFGLGE----NDLGEEGLKFFVQMKESGPSPDNATFTSVL 342 (624)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 342 (624)
|+..+..|...+...+++++|++.|++..+. +..++..|...|.. ..+...+...+......+ .|........+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~a~~~l~~~ 79 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNL 79 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccchhhccccc
Confidence 4566778888888999999999999988643 56666666666655 567788888888877655 22222111111
Q ss_pred --HHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccCCCCCchhHHHHHHHHHHcCChHHH
Q 006955 343 --TICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSVPIHDIISWNSIICGLAYHGYAEKA 420 (624)
Q Consensus 343 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 420 (624)
.......+.+.+...++...+.|.... ...+...+.. ..........+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~---------------------------~~~~~~~~~~a 129 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHD---------------------------GKVVTRDFKKA 129 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHH---------------------------CSSSCCCHHHH
T ss_pred cccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccC---------------------------CCcccchhHHH
Confidence 112234556677777776665543211 1111111110 00012233444
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhc----ccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHHHH
Q 006955 421 LELFERMRLTDFKPDDITFVGVLSACS----YAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDEAM 492 (624)
Q Consensus 421 ~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 492 (624)
...+...... .+...+..+...+. ...+...+..+++...+. .++.....+...|.. ..+.++|+
T Consensus 130 ~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 130 VEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhh
Confidence 4444444432 22333333333333 234556666666665542 244455555555543 56788888
Q ss_pred HHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCC
Q 006955 493 NLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 538 (624)
.+|++..+.| ++..+..|...|.. ..+.++|.+.|+++.+..+
T Consensus 203 ~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 203 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8888887765 34455566666643 3478888888888887765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=2e-05 Score=77.83 Aligned_cols=129 Identities=13% Similarity=-0.004 Sum_probs=54.7
Q ss_pred hCCHHHHHHHhccCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHH
Q 006955 383 CGNIQSALLEFSSVP---IHDIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYF 459 (624)
Q Consensus 383 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (624)
.+.++.++..+.... .++...+..+...+...|+.++|...++..... .| ..++..+...+...|++++|...+
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 344455554444433 223344555555555566666655555444321 11 134445555566666666666666
Q ss_pred HHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHH
Q 006955 460 DCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACR 518 (624)
Q Consensus 460 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (624)
+++.+ +.| +...|+.|...|...|+..+|+..|.+.+... +|-+..+..|...+.
T Consensus 176 ~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 176 RHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 66665 335 45566666666666666666666666655532 445555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.55 E-value=3e-05 Score=61.75 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=72.0
Q ss_pred hhccCChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHh----------cCChHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006955 482 LGRFGLIDEAMNLLNEIRADGIEV-SPTVWGALLGACRI----------HNNIKVGEIAGERVMELEPNNSGVYLILTEM 550 (624)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 550 (624)
|-+.+.+++|++.++...+ +.| ++.++..+..++.. .+.+++|+..++++++++|.++.+|..++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence 4566779999999999988 455 67788888888764 3556889999999999999999999999999
Q ss_pred HHhcCC-----------hHHHHHHHHHHHHCC
Q 006955 551 YLSCGR-----------REDAKRIFAQMKENG 571 (624)
Q Consensus 551 ~~~~g~-----------~~~A~~~~~~m~~~~ 571 (624)
|...|+ +++|.+.|++..+..
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 987764 678888888776653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.54 E-value=7e-05 Score=66.22 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=22.2
Q ss_pred cChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCChHHHHHHHHHccc
Q 006955 449 AGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLIDEAMNLLNEIRA 500 (624)
Q Consensus 449 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (624)
.|++++|+..+++..+. .| +...+..++..|+..|++++|.+.++...+
T Consensus 9 ~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444444442 23 344444444444444444444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=0.00033 Score=57.63 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=60.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccC
Q 006955 407 IICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFG 486 (624)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 486 (624)
........|++++|.+.|.+.... .+.... ..+. .+.+ +...-..+.. .....+..++..+.+.|
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~~~~-~~~w--~~~~r~~l~~-----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----DDLR-DFQF--VEPFATALVE-----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----GGGT-TSTT--HHHHHHHHHH-----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----ccCc-chHH--HHHHHHHHHH-----HHHHHHHHHHHHHHHCC
Confidence 345567778888888888887763 222110 0000 0110 0011111111 02344556666677777
Q ss_pred ChHHHHHHHHHcccCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEV-SPTVWGALLGACRIHNNIKVGEIAGERVM 534 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 534 (624)
++++|+..++++.+ +.| +...|..++.++...|+..+|.+.|+++.
T Consensus 82 ~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 82 RASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777777665 334 56667777777777777777777776663
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.34 E-value=9e-05 Score=65.47 Aligned_cols=129 Identities=12% Similarity=0.001 Sum_probs=91.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHhhccCCh
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDD-ITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RSAHYTCVVDLLGRFGLI 488 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 488 (624)
..+.|++++|+..+++..+. .|+. ..+..+...++..|++++|...++...+ +.| +...+..+...+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhcccc
Confidence 34679999999999999984 5654 7888899999999999999999999987 457 455555555555555555
Q ss_pred HHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchH
Q 006955 489 DEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVY 544 (624)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 544 (624)
+++..-.......+-+++...+......+...|+.++|...++++.+..|..+..+
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44433333322222122233444445567788999999999999999999776654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00078 Score=48.57 Aligned_cols=65 Identities=12% Similarity=-0.042 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------CchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 006955 507 PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN-------SGVYLILTEMYLSCGRREDAKRIFAQMKENG 571 (624)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 571 (624)
+..+-.+...+...|++++|...+++++++.|.+ +.++..|+.+|.+.|++++|.+.++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3444567888999999999999999999866543 3468999999999999999999999998763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.11 Score=49.31 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=39.3
Q ss_pred ccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH
Q 006955 484 RFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRI 563 (624)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 563 (624)
..+..+.+..++......+ .+.......+......+++..+...+..+.......+...+.+++++...|+.++|..+
T Consensus 264 ~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp STTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 3444555555555444322 22333333333344455555555555544332222334455566666666666666655
Q ss_pred HHHH
Q 006955 564 FAQM 567 (624)
Q Consensus 564 ~~~m 567 (624)
+...
T Consensus 342 ~~~~ 345 (450)
T d1qsaa1 342 LHQL 345 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.05 E-value=0.00053 Score=55.11 Aligned_cols=68 Identities=10% Similarity=-0.058 Sum_probs=50.7
Q ss_pred chHHHHHHHhhccCChHHHHHHHHHcccC-----CCCcC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 473 AHYTCVVDLLGRFGLIDEAMNLLNEIRAD-----GIEVS-----PTVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
.+|+.+..+|...|++++|++.+++.++. ...++ ...+..+..+|...|++++|...|++++++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45777888888888888888888776531 11121 2256777888999999999999999999876644
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.88 E-value=0.11 Score=39.40 Aligned_cols=111 Identities=11% Similarity=-0.014 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHH
Q 006955 451 LVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVG 526 (624)
Q Consensus 451 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a 526 (624)
+.++|.++|++..+. + ++.....|. .....+.++|++++++..+.| ++.....|...|.. ..|.++|
T Consensus 8 d~~~A~~~~~kaa~~-g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-N---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHT-T---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHC-C---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 455555555555442 1 222222222 223356677777777766654 23333344444432 4567888
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 006955 527 EIAGERVMELEPNNSGVYLILTEMYLS----CGRREDAKRIFAQMKENGV 572 (624)
Q Consensus 527 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 572 (624)
.++++++.+.. ++.....|+.+|.. ..+.++|.+++++..+.|.
T Consensus 79 ~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 88888887654 46677778877776 3578888888888877774
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.04 Score=40.66 Aligned_cols=68 Identities=15% Similarity=0.006 Sum_probs=33.7
Q ss_pred cchHHHHHHHhhccC---ChHHHHHHHHHcccCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 006955 472 SAHYTCVVDLLGRFG---LIDEAMNLLNEIRADGIEVSP-TVWGALLGACRIHNNIKVGEIAGERVMELEPNN 540 (624)
Q Consensus 472 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 540 (624)
+.+--...+++++.. +.++++.++++....+ +.+. ..+-.|.-+|.+.|++++|.+.++++++++|.+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 333334444444332 3445556665555421 1222 244445555556666666666666666666644
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.039 Score=40.75 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=27.7
Q ss_pred ChHHHHHHHHHHHccCCCCC-chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 522 NIKVGEIAGERVMELEPNNS-GVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 522 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
+.++++.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+++.
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44555666666655555443 34555666666666666666666655543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.13 E-value=0.37 Score=34.97 Aligned_cols=141 Identities=9% Similarity=0.069 Sum_probs=89.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhccCChHH
Q 006955 411 LAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGRFGLIDE 490 (624)
Q Consensus 411 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 490 (624)
+...|..++..+++.+... ..+..-++.++--....-+-+-..++++.+-+-+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 3445667777777776655 22334444444444444455555566665554433333 333333
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILTEMYLSCGRREDAKRIFAQMKEN 570 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 570 (624)
....+-.+- .+.......+.....+|.-++-.+++..+.+.+..+|..+..++.+|.+.|...++.+++.+..+.
T Consensus 75 vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 75 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 333333322 222344555666778888888888988877766558999999999999999999999999999999
Q ss_pred CCc
Q 006955 571 GVK 573 (624)
Q Consensus 571 ~~~ 573 (624)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 874
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.90 E-value=0.48 Score=35.58 Aligned_cols=112 Identities=9% Similarity=-0.095 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHHHHhhc----cCChHH
Q 006955 415 GYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVVDLLGR----FGLIDE 490 (624)
Q Consensus 415 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 490 (624)
.++++|.++|++..+.|. ......+. .....+.++|.+++++..+. | ++.....|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 367888888888888762 22222232 34456788899998887764 2 45555556666543 457899
Q ss_pred HHHHHHHcccCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCC
Q 006955 491 AMNLLNEIRADGIEVSPTVWGALLGACRI----HNNIKVGEIAGERVMELEP 538 (624)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 538 (624)
|.++|++..+.| ++.....|...|.. ..|.++|..+++++.+...
T Consensus 78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 999999988766 23344445555543 4689999999999887664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.51 E-value=0.98 Score=32.72 Aligned_cols=139 Identities=10% Similarity=0.040 Sum_probs=76.6
Q ss_pred HHcCCCHHHHHHHhhhCCCC-CcchHHHHHHHHHhcCChHHHHHHHhhcC-CCCcchhhHHHHHHHhcCChHHHHHHHhh
Q 006955 217 LVNSRRIDAAISYFKQMPET-CEKTWNSIISVLIRNGLVKEAHSYLEKYP-YSNIASWTNVIVGYFEMGEVGSAIKVFEL 294 (624)
Q Consensus 217 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (624)
+.-.|.+++..+++.+...+ +..-|+-++--....-+-+-..+.++.+- .-|. ..++++......+-.
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl----------s~C~Nlk~vv~C~~~ 81 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVI 81 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhhcCc----------hhhhcHHHHHHHHHH
Confidence 34456666666666665542 22234444443444444444444443332 0111 112222222222222
Q ss_pred cCCCCceehhhhhhHhhcCCCchHHHHHHHHhHHcCCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 006955 295 MTTRDVTVWNVMIFGLGENDLGEEGLKFFVQMKESGPSPDNATFTSVLTICSDLPTLDLGRQIHAQAIKIARN 367 (624)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (624)
+-. +....+..+.....+|+-++-.++++.+.+.+ .|++.....+..+|.+.|...++..++.++-+.|.+
T Consensus 82 ~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 82 NNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp TTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 211 22334455666777888888888888866643 777777778888888888888888888887777643
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.29 E-value=1.4 Score=30.10 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCchHHHHH
Q 006955 487 LIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVMELEPNNSGVYLILT 548 (624)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 548 (624)
+.-+..+-++.+....+-|+|.+..+.+.+|.+.+|+..|.++++-+...--.+...|-.+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 55567777788777778999999999999999999999999999988875433555666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.57 E-value=1.9 Score=29.56 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 006955 416 YAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQPRSAHYTCVV 479 (624)
Q Consensus 416 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 479 (624)
+.-++.+-++.+....+.|++....+.+.+|-+.+++..|.++|+.++.+.+ ++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence 3345555666666666777777777777788777788888887777776532 3444555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.83 E-value=18 Score=33.20 Aligned_cols=407 Identities=11% Similarity=-0.032 Sum_probs=220.9
Q ss_pred HHHHHhCCChhHHHHHhccCCC-CCcccHHHHHHHHH--cCCChHHHHHHHHhcccC--ChhHHHHHHHHHHhCCChHHH
Q 006955 90 ISGYVCNGLIDEALRVFHGMPL-KDVVSWNLVIGALV--NCQRMDLAESYFKEMGAR--DVASWTIMVNGLVREGRIVEA 164 (624)
Q Consensus 90 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 164 (624)
+.-..+.|+...+.++...+.. | ...|...-..-. ......+...++++-... ........+..+.+.+++...
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dyp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~ 91 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDYP-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTST-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhcCCC-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHH
Confidence 3445677788887777777753 3 333433322222 233455555555443221 111223345566778888877
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHcCChhHHHHHHHHcccC---CcccHHHHHHHHHcCCCHHHHHHHhhhCCCCCcchH
Q 006955 165 RKLFDKMPAKDVQAWNLMIAGYLDNGCVGVAEDLFQKMHDR---DLTSWKQLINGLVNSRRIDAAISYFKQMPETCEKTW 241 (624)
Q Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 241 (624)
.+.+..- ..+...-.....+....|+.++|...+..+-.. .+..+..+...+...|.. +...+
T Consensus 92 ~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~l-------------t~~~~ 157 (450)
T d1qsaa1 92 LAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ-------------DPLAY 157 (450)
T ss_dssp HHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS-------------CHHHH
T ss_pred HHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCC-------------CHHHH
Confidence 7766432 224555556667777888888888777766432 233445555544443322 22233
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcchhhHHHHHHHhcCChHHHHHHHhhcCCCCceehhhhhhHhhc--CCCchHH
Q 006955 242 NSIISVLIRNGLVKEAHSYLEKYPYSNIASWTNVIVGYFEMGEVGSAIKVFELMTTRDVTVWNVMIFGLGE--NDLGEEG 319 (624)
Q Consensus 242 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a 319 (624)
-.-+......|+...|..+...+...........+.....- ..+....... ..+......+..++.+ ..+.+.+
T Consensus 158 ~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~~-~~~~~~~~~~~~~l~rla~~d~~~a 233 (450)
T d1qsaa1 158 LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVARQDAENA 233 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhcC-CCChhhhHHHHHHHHHHhccChhHH
Confidence 33444555667777777776655433333344444433322 2222222221 1222222222233222 3467778
Q ss_pred HHHHHHhHHcC-CCCCHH-HHH-HHHHHHcCCCCcHHHHHHHHHHHHhCCCCCcchhHHHHHHhHhhCCHHHHHHHhccC
Q 006955 320 LKFFVQMKESG-PSPDNA-TFT-SVLTICSDLPTLDLGRQIHAQAIKIARNQFTTVSNAMITMYARCGNIQSALLEFSSV 396 (624)
Q Consensus 320 ~~~~~~m~~~~-~~p~~~-~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (624)
..++....... ..++.. ... .+.......+..+.+...+......+ .+.......+......+++..+...+..+
T Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l 311 (450)
T d1qsaa1 234 RLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARL 311 (450)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhc
Confidence 88887765543 222221 111 22223344566777777766655443 33344445566667789999999999988
Q ss_pred CCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHhcccChHHHHHHHHHHhhhhcCCCC-Cc
Q 006955 397 PIH---DIISWNSIICGLAYHGYAEKALELFERMRLTDFKPDDITFVGVLSACSYAGLVDQGRYYFDCMKNKYFLQP-RS 472 (624)
Q Consensus 397 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~ 472 (624)
... .....-=+..++...|+.+.|...|..... .++ |...+.+- +.|..- .+. ...+++ ..
T Consensus 312 ~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~-~Lg~~~-------~~~-~~~~~~~~~ 376 (450)
T d1qsaa1 312 PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAAQ-RIGEEY-------ELK-IDKAPQNVD 376 (450)
T ss_dssp CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHHH-HTTCCC-------CCC-CCCCCSCCC
T ss_pred CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHHH-HcCCCC-------CCC-cCCCCccHH
Confidence 732 122223356788899999999999999864 233 44333321 111100 000 000000 11
Q ss_pred ch-----HHHHHHHhhccCChHHHHHHHHHcccCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 006955 473 AH-----YTCVVDLLGRFGLIDEAMNLLNEIRADGIEVSPTVWGALLGACRIHNNIKVGEIAGERVME 535 (624)
Q Consensus 473 ~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 535 (624)
.. -..-+..+...|+...|...+..+.. ..++.....+.....+.|.++.|+....++..
T Consensus 377 ~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~---~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVK---SKSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 11 11235567788999999999988874 33566677777888899999999988887744
|