Citrus Sinensis ID: 006974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
Protein Sequence
MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQCKDKGIHLA
Secondary Structure (PSIPRED)
ccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHcHHcccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccEEEEccEEEEEEcccccccccccEEEEEcccccEEEEccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHccccccEEEEcccccccccccEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccEEEEEEcHHHHHcccccEEEEccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEccccccccccEEEEEccccccEcccccccccccccccccccccccccccccccEEEccccccEcccEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccEcEEHHEEEEcccHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHccccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQsqpldlstIEDIAGILNSavsgqllspseiCAVRRTLRAVNNVWKKLTEAAeldgdslqrYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQaggidkplitKRRSRMCVGIkashkyllpdgialnvsssgatyfmepkgavefnnmevrlsnseiAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFaqwmdgvcpilssqshvsfdssiniegikhplllgsslrslsaassnsnplksdvensemtvgslskgisdfpvpidikvecETRVVvitgpntggktaSMKTLGLASLMSkaglylpaknhprlpwfdLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDeigsgtdpsegVALATSILQYLRDRVGLAVVTTHYadlsclkdkdtrFENAATEFSLETLRPTYRilwgstgdsnaLNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTStlskvdfdaipnidqckdkgihla
Flexible Loop (DISEMBL)
mghavvqkaqipfgksLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTeaaeldgdsLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFqaggidkplitkrRSRMCVGIKAshkyllpdgIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSnsnplksdvensEMTVGSLSKGISDFPVPIDIKVECETRVVvitgpntggktasMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEigsgtdpsegVALATSILQYLRDRVGLAVVTTHYadlsclkdkdtRFENaatefsletlrptyRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVerlrperqqhrkselYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTSTlskvdfdaipnidqckdkgihla
Low Complexity Region (SEG)
MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHplllgsslrslsaassnsnplksDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQCKDKGIHLA
Disordered region (IsUnstruct)
***************************************DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLL*********************************GISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQK****************************************EIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQC********
Disordered Region (DISOPRED)
MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLEL************************Q*GGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS******************************GISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV*********************************************************************************D******
Disordered Region (DISEMBL)
MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLR************************SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEE**********AASLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQCKDKGIHLA
Disordered Region (DISPRO)
*GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGS**************************GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQCKDKGIHLA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHAVVQKAQIPFGKSxxxxxxxxxxxxxxxxxxxxxPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIIxxxxxxxxxxxxxxxxxxxxxxxxxxxxVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELxxxxxxxxxxxxxxxxxxxxxHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQCKDKGIHLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	623	2.2.26 [Sep-21-2011]
P73625	822	MutS2 protein OS=Synechoc	N/A	no	0.834	0.632	0.346	7e-80
B8D298	791	MutS2 protein OS=Halother	yes	no	0.826	0.651	0.344	2e-74
A5D0W6	785	MutS2 protein OS=Pelotoma	yes	no	0.731	0.580	0.352	2e-71
A6TNX0	789	MutS2 protein OS=Alkaliph	yes	no	0.756	0.596	0.341	1e-69
A0PZP4	785	MutS2 protein OS=Clostrid	yes	no	0.815	0.647	0.346	2e-68
A3DE67	793	MutS2 protein OS=Clostrid	yes	no	0.817	0.641	0.333	3e-68
Q67QE3	793	MutS2 protein OS=Symbioba	yes	no	0.804	0.631	0.325	7e-68
C3KTI4	788	MutS2 protein OS=Clostrid	yes	no	0.794	0.628	0.333	2e-67
A9KR74	796	MutS2 protein OS=Clostrid	yes	no	0.794	0.621	0.340	2e-67
C5D5Q8	784	MutS2 protein OS=Geobacil	yes	no	0.736	0.585	0.343	2e-67

>sp|P73625|MUTS2_SYNY3 MutS2 protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mutSB PE=3 SV=1

 Score =  298 bits (764), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 205/592 (34%), Positives = 307/592 (51%), Gaps = 72/592 (12%)

Query: 18  EESQKLLNQTSAALAMMQSQP--LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAV 75
           EES++LL QT A  ++  S         I DI   L     G L++  E+ A+  TL  V
Sbjct: 49  EESRELLAQTQAVESIENSPESNWHFKGIADITEPLARVERGGLVTGLELLAIAGTLAGV 108

Query: 76  NNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI--DCKLLIILDRASE 133
             + + + E  +L+         L  L+     L ELE+ I  C+  D K   + +RAS 
Sbjct: 109 RRLRRVIEERDDLEI--------LQTLVAEVRTLPELEQAIHHCLGEDGK---VAERASP 157

Query: 134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDG 193
            L  IR + K   E +   L+K+  +  Q+  + + +IT+R  R  + IKA +K  +P G
Sbjct: 158 KLGEIRQKLKAVREQIQQKLQKIIQR--QSNALQEAVITQRGDRFVLPIKAGYKEQMP-G 214

Query: 194 IALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMD 253
           I  + S+SG T ++EP+  VE  N   +    E  EE  IL  L+ ++ +   ++++L+ 
Sbjct: 215 IVHDSSASGNTLYVEPQAIVELGNKLRQARRQEQTEEERILRQLSDQVLEVLLDLEHLLA 274

Query: 254 RVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASS 313
               +DLA AR  ++ W+    P   +      +  I +  ++HPLL   + +    A  
Sbjct: 275 IATRLDLATARVRYSFWLGAHPPQWLTPGD---EKPITLRQLRHPLLHWQAEKEGGPAV- 330

Query: 314 NSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGL 373
                                      VPI + ++ + RV+ ITGPNTGGKT ++KTLGL
Sbjct: 331 ---------------------------VPITLTIDSQIRVIAITGPNTGGKTVTLKTLGL 363

Query: 374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR-- 431
            +LM+K GLY+PAK    +PWF  ILADIGD QSL+QNLSTFSGHI RI+ IL+ +    
Sbjct: 364 VALMAKVGLYIPAKETVEMPWFAQILADIGDEQSLQQNLSTFSGHICRIIRILQALPSGV 423

Query: 432 ----------------ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD 475
                            SLVL+DE+G+GTDP+EG ALA ++L++L D+  L V TTHY +
Sbjct: 424 QDVLDPEIDSPNHPIFPSLVLLDEVGAGTDPTEGSALAIALLRHLADQPCLTVATTHYGE 483

Query: 476 LSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV 535
           L  LK +D RFENA+ EF  ++L PTYR+LWG  G SNAL IA+ +G    I+++A+  +
Sbjct: 484 LKALKYQDARFENASVEFDDQSLSPTYRLLWGIPGRSNALAIAQRLGLPLAIVEQAKDKL 543

Query: 536 ERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSAS 587
                +  Q     +   L  +RR+ E +A  A  L  E    Y++ S  A+
Sbjct: 544 GGFSEDINQ-----VIAGLESQRREQEQKAANAQKLLQETEIFYQQVSQKAA 590

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|B8D298|MUTS2_HALOH MutS2 protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=mutS2 PE=3 SV=1

 Score =  280 bits (716), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 204/593 (34%), Positives = 296/593 (49%), Gaps = 78/593 (13%)

Query: 44  IEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQR-YSPLLEL 102
           I D+  I+  A  G +LS  E+  VR TL  V  + K   E      D LQ  YS + E 
Sbjct: 68  IRDLREIIEKADKGIVLSVKEVMDVRSTLEGVRELKKYSREIGTGIDDELQDIYSIITEK 127

Query: 103 LKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQ 162
                 L +LE +I  CID +   I D AS  L  IR E  R    ++  L  +      
Sbjct: 128 FDRLTPLKQLENEINRCID-EHGEIKDSASRKLRSIRREMDRIEGKINDKLNSIINNTRY 186

Query: 163 AGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRL 222
              +   L+T R +R  V +K+S+K     GI  + S+SG TYFMEP   V+ NN    L
Sbjct: 187 QEMLQDKLVTIRGNRYVVPVKSSYKNTFS-GIVHDQSTSGLTYFMEPMAIVKLNNRLGEL 245

Query: 223 SNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQS 282
             +E  E   IL  L+  I +  R++   ++ V  +D+ FARA F+  ++G+ P ++ + 
Sbjct: 246 KRAEEQEIYRILKKLSENIKEHTRDLSDNLEMVSLLDVDFARARFSIEIEGIEPGINDKG 305

Query: 283 HVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVP 342
                  INI G +HPLL                 +K                    PVP
Sbjct: 306 F------INIRGGRHPLL----------------KVK--------------------PVP 323

Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
           IDI V  E + +VITGPNTGGKT ++KT+GL  LM +AGL++PA+    +  F+ + ADI
Sbjct: 324 IDITVGNEFKTLVITGPNTGGKTVALKTVGLFVLMVQAGLHIPAEEETVISIFNGVYADI 383

Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
           GD QS+EQNLSTFS HI+RI   L      SLVL+DEIG GTDP EG AL  +IL++LR+
Sbjct: 384 GDEQSIEQNLSTFSSHINRIKRFLGKADARSLVLLDEIGVGTDPREGAALGVAILEHLRE 443

Query: 463 RVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
           R    + TTHY+++          ENA+ EF +ETL+PTYR+L G  G SNA  IA  +G
Sbjct: 444 RGVTTIATTHYSEIKSYAYSQDGVENASVEFDMETLQPTYRLLMGIPGGSNAFEIALKLG 503

Query: 523 FDRKIIQ-----------RAQKLVERLRPERQQH---------------RKSELYQSLM- 555
               II+           + + ++  L  ER+++               +K + Y SL+ 
Sbjct: 504 LPHDIIKDGKELMSGDDIKVENIISDLNEERKKYEQLKIEIEERLEAVKKKEQKYDSLLT 563

Query: 556 ---EERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVD 605
              + ++KL ++AR  A    +I+   R++S      +   +FA  S + +V+
Sbjct: 564 DLEKRKKKLITEAREEA---LQIIKKTRKESKEILRRLKNKEFASRSDIDRVE 613

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

>sp|A5D0W6|MUTS2_PELTS MutS2 protein OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mutS2 PE=3 SV=1

 Score =  270 bits (691), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 182/516 (35%), Positives = 268/516 (51%), Gaps = 60/516 (11%)

Query: 25  NQTSAALAMMQSQPL-DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLT 83
            +TS    +++ +P  +    +DI   L  A  G +L P E+ AV  TL A   + K   
Sbjct: 48  EETSEGRKLLRLEPFAEAGGWKDIRAQLRKAGQGAILDPEELLAVADTLTAGRTIRKFFQ 107

Query: 84  EAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIR---- 139
                  D  ++Y  L E+      L ELE KI   I      + D AS +L  IR    
Sbjct: 108 -------DRQEQYPLLYEVSSALVSLPELERKIKNAI-LPGGEVADGASPELAQIRRRLA 159

Query: 140 AERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVS 199
           A + +  E+L+ +++  + Q +    + +P++T R  R  V +K  H+  +P GI  + S
Sbjct: 160 AAQAQVKEHLEHIIRSPSYQKY----LQEPIVTIREGRYVVPVKIEHRSQVP-GIVHDQS 214

Query: 200 SSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEID 259
           +SGAT F+EP   VE NN   RL  +E  E   IL+ L+A +A+    I   ++ + E+D
Sbjct: 215 ASGATLFIEPMAVVEKNNELRRLMAAEKREIQRILAELSAGVAQHAGPIGASLEALGELD 274

Query: 260 LAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK 319
              ARA ++Q +D   P+L        ++ ++I   +HPLL G                 
Sbjct: 275 FIMARARYSQKLDAWAPLLEG------EACMDIRRGRHPLLQGEV--------------- 313

Query: 320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK 379
                                VPIDI++  +   +VITGPNTGGKT ++KT GL  LM++
Sbjct: 314 ---------------------VPIDIRLGADFDTLVITGPNTGGKTVALKTAGLLVLMAQ 352

Query: 380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDE 439
           +GL++PA    RL  F  + ADIGD QS+EQ+LSTFS H++ IV+I+     +SLVL+DE
Sbjct: 353 SGLHIPAGEGSRLGIFRQVFADIGDEQSIEQSLSTFSSHMNNIVEIIGKAGPDSLVLLDE 412

Query: 440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR 499
           +G+GTDP+EG ALA SIL+ L       V TTHY +L        R ENA+ EF   TLR
Sbjct: 413 LGAGTDPAEGAALAQSILEKLHSAGAKTVATTHYGELKDFALTRERVENASVEFDAITLR 472

Query: 500 PTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV 535
           PTYR+L G  G SNA  IA  +G   ++++RA+  +
Sbjct: 473 PTYRLLIGKPGRSNAFEIAARLGLPEEVVKRARSFL 508

Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438)

>sp|A6TNX0|MUTS2_ALKMQ MutS2 protein OS=Alkaliphilus metalliredigens (strain QYMF) GN=mutS2 PE=3 SV=1

 Score =  265 bits (676), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 270/524 (51%), Gaps = 53/524 (10%)

Query: 15  KSLEESQKLLNQTSAALAMM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLR 73
           +S  E  +L ++TS A +++ Q   + L  I DI   L     G  L P E+  V+ TLR
Sbjct: 38  QSFGEITQLQSETSEAQSILIQRGNIPLGGIHDIKQYLRKTEIGSYLDPKELLLVKDTLR 97

Query: 74  AVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI--DCKLLIILDRA 131
              N+     E     GD   ++  +  L++       +E++I  CI  D +   I D A
Sbjct: 98  TARNLKSFFKE-----GDDQTKHPIVSGLIQGLQSFRAIEDRIEICIVSDTE---ISDHA 149

Query: 132 SEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLP 191
           S  L+ IR +     + + + L  +         +   +IT R+ R  V +K  H+  +P
Sbjct: 150 SSTLKNIRRQISSKNDAVRNKLNGIINSSTTQKYLQDAIITMRQDRYVVPVKQEHRGNVP 209

Query: 192 DGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYL 251
            G+  + SSSGAT F+EP   V+ NN    L   E  E   IL  +   IA+   E++  
Sbjct: 210 -GLIHDQSSSGATLFVEPMAVVQLNNELRELKIKEHIEIERILMEIAEMIAQYATEMRNN 268

Query: 252 MDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAA 311
              +  ID  FA+   +  M GV P+L+       + +++I+  +HPLL           
Sbjct: 269 QIILTAIDFVFAKGKLSLEMKGVEPLLN------VEGNVHIKNGRHPLL----------- 311

Query: 312 SSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371
                                    +D  VP ++ +    + +VITGPNTGGKT ++KTL
Sbjct: 312 ------------------------NADEVVPTNLWIGETFQTLVITGPNTGGKTVTLKTL 347

Query: 372 GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR 431
           GL S+M+++GL++PA    RL  FD I ADIGD QS+EQ+LSTFS H++ IV+I+E V+ 
Sbjct: 348 GLLSMMAQSGLHVPADYGTRLAIFDQIFADIGDEQSIEQSLSTFSSHMTNIVNIVEEVTS 407

Query: 432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT 491
            SLVL DE+G+GTDP+EG AL  +IL +LR+     V TTHY++L      +   ENA+ 
Sbjct: 408 NSLVLFDELGAGTDPTEGAALGMAILNHLREMNVTTVATTHYSELKQYALTNEGVENASV 467

Query: 492 EFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV 535
           EF + TL PTYR+L G  G SNA  I+K +G    ++QRA++ +
Sbjct: 468 EFDVATLSPTYRLLIGVPGKSNAFEISKKLGLPDGLVQRAKRFL 511

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)

>sp|A0PZP4|MUTS2_CLONN MutS2 protein OS=Clostridium novyi (strain NT) GN=mutS2 PE=3 SV=1

 Score =  260 bits (665), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 198/571 (34%), Positives = 293/571 (51%), Gaps = 63/571 (11%)

Query: 12  PFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRT 71
           P+  + E  + L+    A    ++      S + DI   ++ A     L PSE+  V   
Sbjct: 36  PYESAYEVREHLMETEEAFKISIKKGDAPFSGLYDIREAISKAQRRFTLFPSELLRVANL 95

Query: 72  LRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRA 131
           LRA +  +K   ++ +L     ++Y  L  + +    L  LEE+I  CI  +  I  DRA
Sbjct: 96  LRA-SRRFKGYVKSDDLS----EKYEVLESITEGLVPLNGLEEEISKCIIGEEEI-SDRA 149

Query: 132 SEDLELIRAERKRNMENLDSLLKKVAAQIFQ--AGGIDKPLITKRRSRMCVGIKASHKYL 189
           S  L  IR    R++++  S +K     + +  +  + + + T R  R  + +K  HK  
Sbjct: 150 STTLFNIR----RSLKDKTSSIKARVNSLIRTYSSHLQENIYTVRGERYVLPVKVEHKGA 205

Query: 190 LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIK 249
           +P G+  + S+SGAT F+EP   V+ NN    L   E AE   IL+ L+ ++ ++   IK
Sbjct: 206 VP-GLVHDQSASGATLFIEPMSLVDLNNEIKELRLKEKAEIDRILAFLSGKVYENVDVIK 264

Query: 250 YLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS 309
              D + E+D  FA+A +AQ +  + PI+S   H       NI   KHPL+         
Sbjct: 265 VDADILWELDFIFAKAKYAQKLGAIMPIISEDGH------FNIINAKHPLI--------- 309

Query: 310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMK 369
                 +P K  VEN+      L  GI+                VVITGPNTGGKT ++K
Sbjct: 310 ------DP-KKVVENNIY----LRDGITS---------------VVITGPNTGGKTVTLK 343

Query: 370 TLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV 429
           T+GL  +M+ +GL + A     + +F  + ADIGD QS+EQ+LSTFS H++ IV+I++  
Sbjct: 344 TVGLLHIMAMSGLMITASQGSTISFFKEVFADIGDEQSIEQSLSTFSSHMTNIVNIIDSA 403

Query: 430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA 489
              SLVL DE+G+GTDP+EG ALA SIL+ LR R    + TTHY++L     K    ENA
Sbjct: 404 DENSLVLFDELGAGTDPTEGAALAVSILENLRKRKTKVIATTHYSELKAYALKVDNVENA 463

Query: 490 ATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV--ERLRPERQQHRK 547
           + EF +ETLRPTYR+L G  G SNA  I+K +G    II+ A++ +  E L+ E      
Sbjct: 464 SVEFDVETLRPTYRLLIGVPGKSNAFEISKRLGLPDYIIEDAREGISEETLKFE------ 517

Query: 548 SELYQSLMEERRKLESQARTAASLHAEIMDL 578
            +L QSL  +  K +  AR A S   E + L
Sbjct: 518 -DLIQSLQHKNIKAQEHARKAESAKEEAVKL 547

Clostridium novyi (strain NT) (taxid: 386415)

>sp|A3DE67|MUTS2_CLOTH MutS2 protein OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mutS2 PE=3 SV=1

 Score =  259 bits (663), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 194/582 (33%), Positives = 289/582 (49%), Gaps = 73/582 (12%)

Query: 17  LEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN 76
           +E +QK  +   A +A   + P+    I DI   L     G +L+P E+      LRAV 
Sbjct: 43  VERAQKETSDAVAFIARRGTPPM--GGIHDIRDSLKRVEIGAILNPGELLKTADVLRAVR 100

Query: 77  NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLE 136
           N+ K       +  D     S L+  L++      +E++I   I  +  I  D AS  L 
Sbjct: 101 NL-KSYASNDRIKTDEDNIVSELIGCLESNK---RIEDRIYMSILSEDEIA-DNASPTLA 155

Query: 137 LIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIAL 196
            IR + +   E++   L  +         I +P++T R  R  + +K  ++  +P G+  
Sbjct: 156 NIRRQIRNAQESIKDKLNDIIRSSRYQKYIQEPIVTLRGDRYVIPVKQEYRTEIP-GLIH 214

Query: 197 NVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVL 256
           + S+SGAT F+EP   VE NN    L   E AE   IL  LT EI      +K  +  + 
Sbjct: 215 DSSASGATIFIEPMAVVEANNHIRELKIKEQAEIEKILGELTGEIRGIVDSLKSNVSILG 274

Query: 257 EIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSN 316
            +D  FA+A  +   + VCP+L+ +        I I+  +HPLL                
Sbjct: 275 RLDFIFAKARLSLDYNCVCPVLNDEH------KILIKKGRHPLL---------------- 312

Query: 317 PLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASL 376
                    + TV           VPID  +  +   +V+TGPNTGGKT ++KT+GL +L
Sbjct: 313 --------DKKTV-----------VPIDFWIGEDFNTLVVTGPNTGGKTVTLKTVGLFTL 353

Query: 377 MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVL 436
           M++AGL++PA    ++  F  + ADIGD QS+EQ+LSTFS H+  IV IL+ V  +SLVL
Sbjct: 354 MTQAGLHIPANEGTKMSIFKKVYADIGDEQSIEQSLSTFSSHMKNIVGILKDVDEDSLVL 413

Query: 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE 496
            DE+G+GTDP+EG ALA SIL+YLR++    V TTHY+ L          ENA  EF++E
Sbjct: 414 FDELGAGTDPTEGAALAMSILEYLRNKGSTTVATTHYSQLKAYAVTTKFVENACCEFNVE 473

Query: 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV--------------------- 535
           TLRPTYR+L G  G SNA  I+K +G    II++A++ +                     
Sbjct: 474 TLRPTYRLLIGVPGKSNAFAISKRLGLFDDIIEKAKEFLTQDDIKFEDMLMSIEKNLNQS 533

Query: 536 --ERLRPERQQHRKSELYQSLMEERRKL-ESQARTAASLHAE 574
             E+++ E  +    +L + L E++RKL E++ R      AE
Sbjct: 534 ENEKMKAESYRLEAEKLKKELEEQKRKLAENRERLIQEARAE 575

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|Q67QE3|MUTS2_SYMTH MutS2 protein OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=mutS2 PE=3 SV=1

 Score =  259 bits (661), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 281/568 (49%), Gaps = 67/568 (11%)

Query: 19  ESQKLLNQTSAALAMMQS-QPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN 77
           E Q    +TS A  + +    + L  + D+   +  AV G +L P ++  V  T  +   
Sbjct: 42  EVQHRQAETSEARRLYEGGHAIPLGGLHDLRAHVQRAVRGGVLDPGDLLDVADTAASSRR 101

Query: 78  VWKKLTEAAELDGDSLQRYSPLLELL-KNCNFLTELEEKIGFCIDCKLLIILDRASEDLE 136
           + + L E         Q   P+L  L +       LE +I   +D    +  D +    E
Sbjct: 102 LKRFLEE---------QEGLPILTALSRMLGTFHHLEAEIRQAVDEHGEVRDDASPALAE 152

Query: 137 LIRAER---KRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDG 193
           + R+ R    R  E LD+ ++  AA+  Q      P++T R  R  V +K  ++  +P G
Sbjct: 153 IRRSMRILQNRMKERLDAFVRGSAAKYLQ-----DPIVTIREGRFVVPVKIEYRAQVP-G 206

Query: 194 IALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMD 253
           I  + S+SG+T F+EP   VE NN    L+  E  E   IL+ L++ +A     +   + 
Sbjct: 207 IVHDQSASGSTLFIEPMAIVEMNNDLRELALKEHEEVERILARLSSLVAGEADALLDTLQ 266

Query: 254 RVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASS 313
            V +ID A A+   +  +D   P L  +        + I   +HPLL G           
Sbjct: 267 AVAQIDFASAKGKLSLDLDCTEPELVREP------ILEIHKGRHPLLKGRV--------- 311

Query: 314 NSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGL 373
                                      VPID+ +      +VITGPNTGGKT ++KT+GL
Sbjct: 312 ---------------------------VPIDVHIGITFDTLVITGPNTGGKTVALKTMGL 344

Query: 374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRES 433
             LM++AGL+LPA +  R+  F  +  DIGD QS+EQ+LSTFSGH++ I+ IL+ +   +
Sbjct: 345 FVLMAQAGLHLPAGHGTRVGVFQQVFVDIGDEQSIEQSLSTFSGHMTNIIRILDALEGPA 404

Query: 434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF 493
           LVL+DE+G+GTDP+EG ALA SIL++L  R    V TTHY++L       +R ENA+ EF
Sbjct: 405 LVLLDELGAGTDPTEGAALAMSILEHLHKRGAKTVATTHYSELKTYAYTRSRVENASVEF 464

Query: 494 SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQS 553
            +ETLRPT+R+L G  G SNA  I++ +G    I+ RA++ +      ++Q R  +L Q 
Sbjct: 465 DVETLRPTFRLLIGVPGSSNAFEISRRLGLSPHIVDRARQFL-----TQEQERVEDLIQG 519

Query: 554 LMEERRKLESQARTAASLHAEIMDLYRE 581
           +   R +LE +   A  L AE   +  E
Sbjct: 520 IHATRAELEKERAEAHRLRAEAQRMREE 547

Symbiobacterium thermophilum (taxid: 2734)

>sp|C3KTI4|MUTS2_CLOB6 MutS2 protein OS=Clostridium botulinum (strain 657 / Type Ba4) GN=mutS2 PE=3 SV=1

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 290/563 (51%), Gaps = 68/563 (12%)

Query: 16  SLEESQKLLNQTSAALAMMQSQ---PLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTL 72
           S+ E ++ L +T  A  ++ ++   P +   + DI   +  A  G  L P ++  +   L
Sbjct: 39  SVYEVREHLEETKEAFKLLITKGAPPFE--GVYDIRNGIYLAEKGSALLPGQLLKIAAVL 96

Query: 73  RAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRAS 132
           R      + +        +  + Y  L  + +    L ++EE+I   I+ +  I  DRAS
Sbjct: 97  RCARRFREYINHK-----EQEESYRVLENICEGIFSLPKIEEEIFNAIEGEDEI-ADRAS 150

Query: 133 EDLELIRAERKRN----MENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKY 188
             L  IR   K       + ++SL++  ++ +       + + T RR R  + +KA HK 
Sbjct: 151 STLYNIRRSLKEKNYSVRDKINSLVRSYSSYL------QENIYTVRRDRYVLPVKAEHKG 204

Query: 189 LLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREI 248
            +P G+  + SS+GAT F+EP   V  NN    L   E AE   IL++L+A+I  +   +
Sbjct: 205 AVP-GLVHDQSSTGATLFIEPMSLVNLNNEIKELMLKEKAEIERILTVLSAKINANITGV 263

Query: 249 KYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSL 308
           K   + V E+D  FA+A FA   +  CP ++ +  V       IEG +HPL         
Sbjct: 264 KTDANIVWELDFIFAKAKFASEYNCTCPTINDEGIVDI-----IEG-RHPL--------- 308

Query: 309 SAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASM 368
                        ++  E+             VPI +K+  E   ++ITGPNTGGKT ++
Sbjct: 309 -------------IDRREV-------------VPISVKLGEEFTSLMITGPNTGGKTVTL 342

Query: 369 KTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL 428
           KT+GL  LM+ +GL +PA+ +  + +F+ + ADIGD QS+EQ+LSTFS H+  IV+I++ 
Sbjct: 343 KTVGLIHLMAMSGLMIPARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDK 402

Query: 429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN 488
               SLVL DE+G+GTDP+EG ALA SIL+ LR R    + TTHY++L     +    EN
Sbjct: 403 ADENSLVLFDELGAGTDPTEGAALAISILENLRKRGAKIIATTHYSELKAYALRKEGVEN 462

Query: 489 AATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKS 548
           A+ EF +ETLRPTYR+L G  G SNA  I+K +G    II  A++ +       +  R  
Sbjct: 463 ASVEFDVETLRPTYRLLIGIPGKSNAFEISKRLGLPDYIIDFARENI-----SNENIRFE 517

Query: 549 ELYQSLMEERRKLESQARTAASL 571
           EL Q+L E+  K +  AR A +L
Sbjct: 518 ELIQNLQEKSIKAQEDARLAENL 540

Clostridium botulinum (strain 657 / Type Ba4) (taxid: 515621)

>sp|A9KR74|MUTS2_CLOPH MutS2 protein OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=mutS2 PE=3 SV=1

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 197/578 (34%), Positives = 287/578 (49%), Gaps = 83/578 (14%)

Query: 17  LEESQKLLNQTSAALAMMQSQ-PLDLSTIEDIAGIL------NSAVSGQLLSPSEICAVR 69
           LE+  ++  +T+ AL  + ++  L  S I DI   L       S  +G+LL  S +    
Sbjct: 40  LEDIVQMQQETTDALTRLYAKGTLSFSGIPDIRDTLMRLEIGASLGAGELLKISSVLTA- 98

Query: 70  RTLRAVNNVW--KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLII 127
            TLRA N  +  K   E  E   D+L     LLE L   N       +I  CI  +  I 
Sbjct: 99  -TLRAKNYGYNQKNNEETEEAAQDTLTERFHLLEPLSPIN------NEIRRCIISEEEIA 151

Query: 128 LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHK 187
            D AS  L+ +R + K   + +   L  +       G +   +IT R  R C+ IK  +K
Sbjct: 152 -DDASPGLKSVRRQIKITNDKIHESLGSILNSASTKGMLQDAIITMRNGRYCLPIKQEYK 210

Query: 188 YLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSERE 247
                G+  + SS+G+T F+EP   V+ NN    L+  E  E   IL+ L+  +A  +  
Sbjct: 211 NTF-QGMMHDQSSTGSTAFIEPMAIVKLNNELAELAVREQEEIEKILAELSNLVATEKYN 269

Query: 248 IKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS 307
           +KY    + E+D  FARAG ++ M       +SQ H +    INI+  +HPL+       
Sbjct: 270 LKYNQTTLAELDFIFARAGLSKNMK------ASQPHFNNRHYINIKKGRHPLI------- 316

Query: 308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTAS 367
                   +P K                     VPIDI    +  ++VITGPNTGGKT S
Sbjct: 317 --------DPKKV--------------------VPIDIYFGDKFDLLVITGPNTGGKTVS 348

Query: 368 MKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE 427
           +KT+GL +LM +AGL++PA +   L  F+ + ADIGD QS+EQ+LSTFS H++  V ILE
Sbjct: 349 LKTVGLFTLMGQAGLHIPAFDGSELSIFEEVYADIGDEQSIEQSLSTFSSHMTNTVSILE 408

Query: 428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE 487
             +  SLVL DE+G+GTDP+EG ALA +IL YL  R    + TTHY++L           
Sbjct: 409 HANENSLVLFDELGAGTDPTEGAALAMAILSYLHQRKIRTMATTHYSELKIFALSTDGVS 468

Query: 488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV------------ 535
           NA  EFS+ETL+PTYR+L G  G SNA  I+  +G    II++A++ +            
Sbjct: 469 NACCEFSVETLQPTYRLLIGIPGKSNAFAISSKLGLSNYIIEKAREFIGTKDESFEDVIS 528

Query: 536 ---------ERLRPERQQHRK--SELYQSLMEERRKLE 562
                    E+ + E +Q++K   EL + L E+  K++
Sbjct: 529 NLEASRIAMEKDKAEAEQYKKEVEELKRKLAEKNSKID 566

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (taxid: 357809)

>sp|C5D5Q8|MUTS2_GEOSW MutS2 protein OS=Geobacillus sp. (strain WCH70) GN=mutS2 PE=3 SV=1

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/516 (34%), Positives = 265/516 (51%), Gaps = 57/516 (11%)

Query: 21  QKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK 80
           Q+  ++  AAL +    PL    I DI   L  A  G  LSP E+  +  T+ A     +
Sbjct: 47  QEETDEAVAALRLRGHVPL--GGIFDIRASLKRAKIGGTLSPHELLDIASTISAS----R 100

Query: 81  KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRA 140
           +L +  E   +  + +  L    +    L E+++ I  CID    + +D ASE L  IR 
Sbjct: 101 QLKQFIESLHEEKEEFPHLAGYAEKLAALPEVQQAIERCIDDHGEV-MDHASERLRSIRQ 159

Query: 141 ERK----RNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIAL 196
           + +    R  E L+++++  +AQ   +  I    IT R  R  + +K  ++ +   GI  
Sbjct: 160 QLRTTEARVREKLENIIRSQSAQKMLSDAI----ITIRNDRYVIPVKQEYRGVY-GGIVH 214

Query: 197 NVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVL 256
           + S+SGAT F+EP+  VE NN        E  E   IL+ LT+ +A+    +   +D + 
Sbjct: 215 DQSASGATLFIEPQAVVELNNQLQEARVKEKREIERILTELTSIVAEHAEALLENVDILA 274

Query: 257 EIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSN 316
           ++D  FA+A +A  +    P+++ + ++    +      +HPL+                
Sbjct: 275 QLDFIFAKAKYANKLKATKPVMNDRGYIRLLQA------RHPLI---------------- 312

Query: 317 PLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASL 376
                                D  VP DI++  +   +VITGPNTGGKT ++KT+GL +L
Sbjct: 313 -------------------DQDVVVPNDIELGKDYTTIVITGPNTGGKTVTLKTIGLLTL 353

Query: 377 MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVL 436
           M++AGL++PA +   L  F  + ADIGD QS+EQ+LSTFS H+  IVDIL  V  ESLVL
Sbjct: 354 MAQAGLFIPALDGSELAVFRSVYADIGDEQSIEQSLSTFSSHMVNIVDILRNVDHESLVL 413

Query: 437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE 496
            DE+G+GTDP EG ALA +IL  +  R    V TTHY +L           NA+ EF  E
Sbjct: 414 FDELGAGTDPQEGAALAIAILDEVHGRGARTVATTHYPELKAYGYNRDGVINASVEFDTE 473

Query: 497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQ 532
           TLRPTY++L G  G SNA  I+K +G D +II+RA+
Sbjct: 474 TLRPTYKLLIGIPGRSNAFEISKRLGLDERIIERAK 509

Geobacillus sp. (strain WCH70) (taxid: 471223)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
224079239	908	predicted protein [Populus trichocarpa]	0.924	0.634	0.688	0.0
255556027	873	DNA mismatch repair protein muts2, putat	0.876	0.625	0.663	0.0
358346679	913	MutS2 family protein [Medicago truncatul	0.926	0.631	0.645	0.0
356521349	914	PREDICTED: mutS2 protein-like isoform 1	0.927	0.632	0.639	0.0
356521351	902	PREDICTED: mutS2 protein-like isoform 2	0.927	0.640	0.639	0.0
449457723	890	PREDICTED: mutS2 protein-like [Cucumis s	0.892	0.624	0.622	0.0
334183641	876	DNA mismatch repair protein MutS2 [Arabi	0.886	0.630	0.594	0.0
15217840	857	DNA mismatch repair protein MutS2 [Arabi	0.886	0.644	0.594	0.0
297840849	891	predicted protein [Arabidopsis lyrata su	0.882	0.617	0.583	0.0
218195837	916	hypothetical protein OsI_17950 [Oryza sa	0.908	0.617	0.541	1e-177

>gi|224079239|ref|XP_002305805.1| predicted protein [Populus trichocarpa] gi|222848769|gb|EEE86316.1| predicted protein [Populus trichocarpa]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/590 (68%), Positives = 488/590 (82%), Gaps = 14/590 (2%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
           MG ++ + A+IP GKS EESQKLL+QT+AALA+M+S PLD S IEDI  IL+SAVSG LL
Sbjct: 72  MGQSITRNAKIPIGKSKEESQKLLDQTAAALAVMESGPLDFSGIEDITRILDSAVSGTLL 131

Query: 61  SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
           +  E+CAVRRTLRA   V ++L ++    GD  +RY+PLLE+L+NC+F  ELE+K+GFCI
Sbjct: 132 TVGELCAVRRTLRAARAVLERLKDS----GDCSERYAPLLEILQNCSFQIELEKKVGFCI 187

Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
           DC L  ILDRASEDLE+IR+ERKRNMENLD LLK ++A+IFQAGGIDKPL+TKRRSR+CV
Sbjct: 188 DCNLSKILDRASEDLEIIRSERKRNMENLDRLLKGISARIFQAGGIDKPLVTKRRSRLCV 247

Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
           G++ASH+YL+PDG+ LNVSSSG TYFMEP  AVE NN+EV LS+SE AEE AILSLLT+E
Sbjct: 248 GVRASHRYLIPDGVVLNVSSSGVTYFMEPGEAVELNNLEVMLSDSEKAEEIAILSLLTSE 307

Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVS-------FDSSINIE 293
           IA+S R+IKY++D ++E+DL+FARA +A WM+GV PI +S+           +  SI+IE
Sbjct: 308 IAESARDIKYMLDGIIEVDLSFARAAYAYWMNGVRPIWTSEGCGGISSSGGDYLLSIDIE 367

Query: 294 GIKHPLLLGSSLRSLSA--ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET 351
           GI+HPLL G+S + LS    S++ N ++ D E+S +  G  SK +S+FPVPI+IKVEC T
Sbjct: 368 GIRHPLLNGTSRKRLSNILGSNSLNSMEVD-EDSMLDTGKPSKNVSEFPVPINIKVECGT 426

Query: 352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
           RVVVI+GPNTGGKTASMKTLG+ASLMSKAGLYLPAKN P+LPWFD +LADIGDHQSLEQN
Sbjct: 427 RVVVISGPNTGGKTASMKTLGVASLMSKAGLYLPAKNTPKLPWFDFVLADIGDHQSLEQN 486

Query: 412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471
           LSTFSGHISRI  ILE+ S ESLVL+DEI SGTDPSEGVAL+TSIL YLRD V LAVVTT
Sbjct: 487 LSTFSGHISRICKILEVASNESLVLVDEICSGTDPSEGVALSTSILHYLRDHVNLAVVTT 546

Query: 472 HYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
           HYADLS LKDKD+RFENAA EFSLETL+PTY+ILWG TGDSNAL+IAKSIGFD  II+RA
Sbjct: 547 HYADLSLLKDKDSRFENAAMEFSLETLQPTYQILWGCTGDSNALSIAKSIGFDSNIIERA 606

Query: 532 QKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           +K VE+L PE+QQ R   LYQSL+EER +LE+QAR  ASLH EIM+LY E
Sbjct: 607 RKWVEKLVPEKQQERSGMLYQSLLEERNRLEAQARKGASLHTEIMELYHE 656

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556027|ref|XP_002519048.1| DNA mismatch repair protein muts2, putative [Ricinus communis] gi|223541711|gb|EEF43259.1| DNA mismatch repair protein muts2, putative [Ricinus communis]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/588 (66%), Positives = 473/588 (80%), Gaps = 42/588 (7%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
           MGH+  + A IP G+S++ES+ LL+QT+AALAMMQ   LD S IEDI GI+NSAVSG LL
Sbjct: 71  MGHSAARSASIPIGESIQESRMLLDQTTAALAMMQYGTLDFSAIEDITGIVNSAVSGNLL 130

Query: 61  SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
           + SE+CAVRRTL A   V ++L +     GD L+R  PLLE+ ++CN   +LE+KIGFCI
Sbjct: 131 TVSELCAVRRTLEAAKAVLERLKDG----GDCLERSYPLLEIFRSCNLQIQLEQKIGFCI 186

Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
           DC LLIILDRASEDLELIR ERK+ MENLD+LLK ++ +IFQAGGID+P +TKRRSR+CV
Sbjct: 187 DCNLLIILDRASEDLELIRYERKKTMENLDNLLKGISTRIFQAGGIDRPFVTKRRSRLCV 246

Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
           G++A+H+YL+PDG+ L+VS SGATYF+EP  AVE NN+EV LSNSE AEE AILSLLT+E
Sbjct: 247 GVRATHRYLIPDGVILDVSGSGATYFVEPGDAVELNNLEVMLSNSERAEEIAILSLLTSE 306

Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQ-------SHVSFDSSINIE 293
           IA+SER+IK L+D +LE+DLAFARA +A+ ++GVCP  +S+       S  ++  SI+IE
Sbjct: 307 IAESERDIKKLLDGILEVDLAFARAAYARQINGVCPTFTSEGYEGEPSSRANYALSIDIE 366

Query: 294 GIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRV 353
           GI+HPLLLGSS +                                FPVPI+IKVEC TRV
Sbjct: 367 GIQHPLLLGSSQQK-------------------------------FPVPINIKVECGTRV 395

Query: 354 VVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS 413
           VVI+GPNTGGKTASMKTLG+ASLMSKAGL+LPA+N P++PWFD++LADIGD+QSLEQNLS
Sbjct: 396 VVISGPNTGGKTASMKTLGIASLMSKAGLFLPARNTPKIPWFDVVLADIGDNQSLEQNLS 455

Query: 414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY 473
           TFSGHISRI  ILE+ S+ESLVLIDEI SGTDPSEGVAL+TSILQYLRDRV LAVVTTHY
Sbjct: 456 TFSGHISRICKILEVTSKESLVLIDEICSGTDPSEGVALSTSILQYLRDRVNLAVVTTHY 515

Query: 474 ADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQK 533
           ADLS LKD D++FENAA EFSLETL+PTY+ILWGSTG+SNAL+IAKSIGFD  II+RA+K
Sbjct: 516 ADLSLLKDSDSQFENAAMEFSLETLQPTYQILWGSTGNSNALSIAKSIGFDSNIIERAEK 575

Query: 534 LVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
            VE+L PE+QQHRK  LY+SLM+ER KLE+QAR AAS+HA+IM+LY E
Sbjct: 576 WVEKLIPEKQQHRKGLLYKSLMDERNKLEAQAREAASVHAQIMELYYE 623

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346679|ref|XP_003637393.1| MutS2 family protein [Medicago truncatula] gi|355503328|gb|AES84531.1| MutS2 family protein [Medicago truncatula]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/600 (64%), Positives = 471/600 (78%), Gaps = 23/600 (3%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
           MG +    A++P G +   SQKLL+QTSAA  + Q Q LD S I D+  IL+ +VSG+LL
Sbjct: 59  MGSSAANNARLPVGLTPHHSQKLLDQTSAARLVPQQQ-LDFSGIHDLTDILSVSVSGKLL 117

Query: 61  SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
           +  E+C VRRTL +   ++  L   A +   S  RYSPLLE+L+NCNFL  LE +I FCI
Sbjct: 118 TVPELCTVRRTLSSARELFDTLRHLASVSNHS-HRYSPLLEILQNCNFLMGLERRIEFCI 176

Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
           DC LL+ILDRASEDLE+IR+ERKRN+E LDSLLK+V++QIF+AGGID+P ITKRRSRMCV
Sbjct: 177 DCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFRAGGIDRPFITKRRSRMCV 236

Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
           GI+AS++YLLP+GI LN SSSGATYFMEPK A++ NNMEVRLSNSE AEE AILS+L +E
Sbjct: 237 GIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASE 296

Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILS-----------SQSHVSF--- 286
           IA S+ EI YL+D++LE+DLAFARA +AQWM+GVCPI S             + +S    
Sbjct: 297 IANSKSEINYLLDKILEVDLAFARAAYAQWMNGVCPIFSLGTLEVCESVEKDNDISVVQD 356

Query: 287 -DSSINIEGIKHPLLLGSSLRSLS----AASSNSNPLKSDVENSEMTVGSLSKGISDFPV 341
            D ++NIEG++HPLLL SSL ++S      S N+  L +   N  M   S S+GI+DFPV
Sbjct: 357 DDLTVNIEGMRHPLLLESSLENISDNVTLRSGNAAELGNG--NGTMASKSASQGITDFPV 414

Query: 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILAD 401
           P+D K+   TRVVVI+GPNTGGKTASMKTLGLASLMSKAG++LPAK  P+LPWFDLIL D
Sbjct: 415 PVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPWFDLILVD 474

Query: 402 IGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR 461
           IGDHQSLEQNLSTFSGHISRI   LE+ S++SLVLIDEIGSGTDPSEGVAL+ SILQYLR
Sbjct: 475 IGDHQSLEQNLSTFSGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLR 534

Query: 462 DRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSI 521
           + V LAVVTTHYADLS +K+KDT FENAA EFSLETL+PTYR+LWG TGDSNAL+IA+SI
Sbjct: 535 EHVNLAVVTTHYADLSTMKEKDTCFENAAMEFSLETLQPTYRVLWGCTGDSNALSIAQSI 594

Query: 522 GFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           GFD+ II  AQK VE+L+PE+QQ R+  LYQSL EE+ +L++QA  AAS+HAEIM++Y E
Sbjct: 595 GFDKNIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSE 654

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521349|ref|XP_003529319.1| PREDICTED: mutS2 protein-like isoform 1 [Glycine max]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/599 (63%), Positives = 469/599 (78%), Gaps = 21/599 (3%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
           MG A    A++P G++  +SQ+LL+QTSAA   + ++PLD S + D+  IL  A SG LL
Sbjct: 61  MGSAAALNARLPIGRTRRDSQRLLDQTSAA--RLVAEPLDFSGVHDLTEILGVATSGHLL 118

Query: 61  SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
           +  E+C VR TL A   ++  L   A    +  QRY PLL++L+NCNF   LE KI FCI
Sbjct: 119 TIRELCTVRHTLAAARELFDALKRVASA-SNHPQRYLPLLDILQNCNFQVGLERKIEFCI 177

Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
           DCKL IILDRASEDLE+IR+ERKRN+E LDSLLK+V++QIFQAGGID+PLI KRRSRMCV
Sbjct: 178 DCKLSIILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFQAGGIDRPLIVKRRSRMCV 237

Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
           GI+ASH+YLLPDG+ LNVSSSGATYFMEPK A++ NN+EVRLS+SE AEE+ ILS+L +E
Sbjct: 238 GIRASHRYLLPDGVVLNVSSSGATYFMEPKDAIDLNNLEVRLSSSEKAEESVILSMLASE 297

Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS------------ 288
           IA SE +I +L+D++L++DLAFARA +AQWM+GVCPI S  +    DS            
Sbjct: 298 IANSESDINHLLDKILKVDLAFARAAYAQWMNGVCPIFSLGNFEGRDSVEDDDDTLVTQE 357

Query: 289 ----SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGS--LSKGISDFPVP 342
               +++I GI+HPLLL SSL ++S   +  +   ++  N   T+ S  + +GISDFPVP
Sbjct: 358 DDDLTVDIVGIRHPLLLESSLENISDNLTLRSGNAAEFGNGNGTMASKYMPQGISDFPVP 417

Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
           +D K+   TRVVVI+GPNTGGKTASMKTLGLASLMSKAG++LPAK +P+LPWFDLILADI
Sbjct: 418 VDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKNPKLPWFDLILADI 477

Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
           GDHQSLEQNLSTFSGHISRI  ILE+ S +SLVLIDEIG GTDPSEGVAL+ SILQYL+D
Sbjct: 478 GDHQSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSASILQYLKD 537

Query: 463 RVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
           RV LAVVTTHYADLS +K+KDTRF+NAA EFSLETL+PTYRILWG TGDSNAL+IA+SIG
Sbjct: 538 RVNLAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSNALSIAQSIG 597

Query: 523 FDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           FDR II RAQK VE+ +PE+QQ R+  LYQSL EER +L++QA  AAS+HAEIM +Y E
Sbjct: 598 FDRNIIDRAQKWVEKFKPEQQQERRGMLYQSLQEERNQLKAQAEKAASVHAEIMSVYNE 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521351|ref|XP_003529320.1| PREDICTED: mutS2 protein-like isoform 2 [Glycine max]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/599 (63%), Positives = 469/599 (78%), Gaps = 21/599 (3%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLL 60
           MG A    A++P G++  +SQ+LL+QTSAA   + ++PLD S + D+  IL  A SG LL
Sbjct: 61  MGSAAALNARLPIGRTRRDSQRLLDQTSAA--RLVAEPLDFSGVHDLTEILGVATSGHLL 118

Query: 61  SPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCI 120
           +  E+C VR TL A   ++  L   A    +  QRY PLL++L+NCNF   LE KI FCI
Sbjct: 119 TIRELCTVRHTLAAARELFDALKRVASA-SNHPQRYLPLLDILQNCNFQVGLERKIEFCI 177

Query: 121 DCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCV 180
           DCKL IILDRASEDLE+IR+ERKRN+E LDSLLK+V++QIFQAGGID+PLI KRRSRMCV
Sbjct: 178 DCKLSIILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFQAGGIDRPLIVKRRSRMCV 237

Query: 181 GIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE 240
           GI+ASH+YLLPDG+ LNVSSSGATYFMEPK A++ NN+EVRLS+SE AEE+ ILS+L +E
Sbjct: 238 GIRASHRYLLPDGVVLNVSSSGATYFMEPKDAIDLNNLEVRLSSSEKAEESVILSMLASE 297

Query: 241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS------------ 288
           IA SE +I +L+D++L++DLAFARA +AQWM+GVCPI S  +    DS            
Sbjct: 298 IANSESDINHLLDKILKVDLAFARAAYAQWMNGVCPIFSLGNFEGRDSVEDDDDTLVTQE 357

Query: 289 ----SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGS--LSKGISDFPVP 342
               +++I GI+HPLLL SSL ++S   +  +   ++  N   T+ S  + +GISDFPVP
Sbjct: 358 DDDLTVDIVGIRHPLLLESSLENISDNLTLRSGNAAEFGNGNGTMASKYMPQGISDFPVP 417

Query: 343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADI 402
           +D K+   TRVVVI+GPNTGGKTASMKTLGLASLMSKAG++LPAK +P+LPWFDLILADI
Sbjct: 418 VDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKNPKLPWFDLILADI 477

Query: 403 GDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD 462
           GDHQSLEQNLSTFSGHISRI  ILE+ S +SLVLIDEIG GTDPSEGVAL+ SILQYL+D
Sbjct: 478 GDHQSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSASILQYLKD 537

Query: 463 RVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG 522
           RV LAVVTTHYADLS +K+KDTRF+NAA EFSLETL+PTYRILWG TGDSNAL+IA+SIG
Sbjct: 538 RVNLAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSNALSIAQSIG 597

Query: 523 FDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           FDR II RAQK VE+ +PE+QQ R+  LYQSL EER +L++QA  AAS+HAEIM +Y E
Sbjct: 598 FDRNIIDRAQKWVEKFKPEQQQERRGMLYQSLQEERNQLKAQAEKAASVHAEIMSVYNE 656

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457723|ref|XP_004146597.1| PREDICTED: mutS2 protein-like [Cucumis sativus] gi|449531305|ref|XP_004172627.1| PREDICTED: mutS2 protein-like [Cucumis sativus]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/591 (62%), Positives = 462/591 (78%), Gaps = 35/591 (5%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQL 59
           MG  V QKA + FG++ EESQKLL+QT+AA A++  S+ LD S IED++GILNSA+SG+L
Sbjct: 69  MGFDVAQKADVRFGRTREESQKLLDQTTAAEAVVSTSRRLDFSGIEDVSGILNSAISGKL 128

Query: 60  LSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFC 119
           L+ +E+C+VRRTL+A   ++++L +A  +      R+ PL+E+L+NC+FL ELE KI FC
Sbjct: 129 LTIAELCSVRRTLKAARELFEEL-QALAVGNHYSDRFLPLIEILQNCDFLVELERKIEFC 187

Query: 120 IDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMC 179
           IDC   IILDRASEDLELIR E+KRNME LDSLLK+V+ +I+QAGGID+PLITKRRSRMC
Sbjct: 188 IDCNYSIILDRASEDLELIRLEKKRNMEELDSLLKEVSFKIYQAGGIDRPLITKRRSRMC 247

Query: 180 VGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA 239
           V ++A+HK L+ DGI L+ SSSGATYFMEPK AV+ NNMEVRLSNSE AEE +ILS+L+ 
Sbjct: 248 VAVRATHKNLVSDGILLSTSSSGATYFMEPKNAVDLNNMEVRLSNSEKAEEISILSMLST 307

Query: 240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSI-------NI 292
           EI++SE  I+ L+D++LE+DLA ARA + +WM GVCP  S++ +   +SSI       +I
Sbjct: 308 EISESENHIRCLLDKILELDLALARAAYGRWMSGVCPCFSAKGYEGLNSSITDNTLSVDI 367

Query: 293 EGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPI--DIKVECE 350
           + I++PLLL + L+  S +                        + DFP+PI  DIK+  +
Sbjct: 368 DAIQNPLLLSNYLKKFSGS------------------------VPDFPMPIAIDIKIMHQ 403

Query: 351 TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQ 410
           TRVVVI+GPNTGGKTAS+KTLGLASLM+KAG+YLPAKNHP+LPWFDL+LADIGDHQSLEQ
Sbjct: 404 TRVVVISGPNTGGKTASLKTLGLASLMAKAGMYLPAKNHPKLPWFDLVLADIGDHQSLEQ 463

Query: 411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT 470
           NLSTFSGHISRI  ILE+ S ESLVLIDEIGSGTDPSEGVAL+TSIL+YL++ V LA+VT
Sbjct: 464 NLSTFSGHISRICKILEVSSDESLVLIDEIGSGTDPSEGVALSTSILRYLKNCVNLAIVT 523

Query: 471 THYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQR 530
           THYADLS +KD D+ FENAA EFSLETL+PTY+ILWGSTGDSNAL IA+SIGFD  II+R
Sbjct: 524 THYADLSRIKDSDSSFENAAMEFSLETLKPTYKILWGSTGDSNALTIAESIGFDPVIIER 583

Query: 531 AQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           A++ +  L PERQ  RK  L++SL+ ER KLE+Q +  ASLHA+I  LY E
Sbjct: 584 AKQWMVNLTPERQDERKGSLFKSLIGERDKLEAQRQKVASLHADISALYYE 634

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183641|ref|NP_001185315.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gi|6227005|gb|AAF06041.1|AC009360_6 Contains similarity to gb|D90908 DNA mismatch repair protein MutS2 from Synechocystis sp. and is a member of PF|00488 Muts family of mismatch repair proteins [Arabidopsis thaliana] gi|332196205|gb|AEE34326.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/584 (59%), Positives = 445/584 (76%), Gaps = 32/584 (5%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVSG 57
           MG +  + A+IP G S EES+ LLN+TSAALA   MM+S+ L LS I+D++ I+  AVSG
Sbjct: 71  MGLSATKNAEIPVGNSPEESRNLLNETSAALAAMEMMKSRGLGLSEIQDLSDIVERAVSG 130

Query: 58  QLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIG 117
           QLL+  E+C VR TL A  + ++KL +AA  D     R +PL+++L+ C+F   L++KI 
Sbjct: 131 QLLTVRELCTVRSTLTAATSTFQKLRKAAISDN----RVTPLVDILQGCDFKDTLQQKIS 186

Query: 118 FCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSR 177
           FCIDC + +ILDRASEDLE+IR+ER+RNMENLDSLLKK++ +IF AGGI+KPLIT+RRSR
Sbjct: 187 FCIDCNMTMILDRASEDLEIIRSERRRNMENLDSLLKKISTKIFLAGGINKPLITQRRSR 246

Query: 178 MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237
           MCV I+A+HK LLP G+ L+VSSS AT F+EPK AVE NNMEVR +NSE AEE AILS+L
Sbjct: 247 MCVAIRATHKSLLPGGVVLSVSSSRATCFIEPKEAVELNNMEVRHANSEKAEEMAILSIL 306

Query: 238 TAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKH 297
           T+E+  ++REI +L+DR+LE+D+AFARA  A W++GV P ++S+   +   +++I+  +H
Sbjct: 307 TSEVVMAQREILHLLDRILELDIAFARASHANWINGVYPNVTSEHTKTPGLAVDIDSAQH 366

Query: 298 PLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVIT 357
           PLLLGS L S         P   D+                FPVP+DIKVE   +VVVI+
Sbjct: 367 PLLLGSVLGS---------PNGGDI----------------FPVPVDIKVESSAKVVVIS 401

Query: 358 GPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417
           GPNTGGKTA +KTLGL SLMSK+G+YLPAKN PRLPWFDLILADIGD QSLEQ+LSTFSG
Sbjct: 402 GPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSG 461

Query: 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477
           HISRI  IL++ S  SLVL+DEI SGTDPSEGVALATSILQY+++RV +AVV+THY DLS
Sbjct: 462 HISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVVSTHYGDLS 521

Query: 478 CLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537
            LKD + RF+NAA EFS+ETL+PT+R+LWGSTG SNAL +AKSIGF+++I++ A K  E+
Sbjct: 522 RLKDNEPRFQNAAMEFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKWTEK 581

Query: 538 LRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           L PE+   RK  L+QSLMEER KL+ QA   A+ H ++M+LY E
Sbjct: 582 LNPEQDVERKGSLFQSLMEERNKLKLQATKTAAFHRDLMNLYHE 625

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217840|ref|NP_176687.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gi|332196204|gb|AEE34325.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/584 (59%), Positives = 445/584 (76%), Gaps = 32/584 (5%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVSG 57
           MG +  + A+IP G S EES+ LLN+TSAALA   MM+S+ L LS I+D++ I+  AVSG
Sbjct: 71  MGLSATKNAEIPVGNSPEESRNLLNETSAALAAMEMMKSRGLGLSEIQDLSDIVERAVSG 130

Query: 58  QLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIG 117
           QLL+  E+C VR TL A  + ++KL +AA  D     R +PL+++L+ C+F   L++KI 
Sbjct: 131 QLLTVRELCTVRSTLTAATSTFQKLRKAAISD----NRVTPLVDILQGCDFKDTLQQKIS 186

Query: 118 FCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSR 177
           FCIDC + +ILDRASEDLE+IR+ER+RNMENLDSLLKK++ +IF AGGI+KPLIT+RRSR
Sbjct: 187 FCIDCNMTMILDRASEDLEIIRSERRRNMENLDSLLKKISTKIFLAGGINKPLITQRRSR 246

Query: 178 MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237
           MCV I+A+HK LLP G+ L+VSSS AT F+EPK AVE NNMEVR +NSE AEE AILS+L
Sbjct: 247 MCVAIRATHKSLLPGGVVLSVSSSRATCFIEPKEAVELNNMEVRHANSEKAEEMAILSIL 306

Query: 238 TAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKH 297
           T+E+  ++REI +L+DR+LE+D+AFARA  A W++GV P ++S+   +   +++I+  +H
Sbjct: 307 TSEVVMAQREILHLLDRILELDIAFARASHANWINGVYPNVTSEHTKTPGLAVDIDSAQH 366

Query: 298 PLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVIT 357
           PLLLGS L S         P   D+                FPVP+DIKVE   +VVVI+
Sbjct: 367 PLLLGSVLGS---------PNGGDI----------------FPVPVDIKVESSAKVVVIS 401

Query: 358 GPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG 417
           GPNTGGKTA +KTLGL SLMSK+G+YLPAKN PRLPWFDLILADIGD QSLEQ+LSTFSG
Sbjct: 402 GPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSG 461

Query: 418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS 477
           HISRI  IL++ S  SLVL+DEI SGTDPSEGVALATSILQY+++RV +AVV+THY DLS
Sbjct: 462 HISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVVSTHYGDLS 521

Query: 478 CLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER 537
            LKD + RF+NAA EFS+ETL+PT+R+LWGSTG SNAL +AKSIGF+++I++ A K  E+
Sbjct: 522 RLKDNEPRFQNAAMEFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKWTEK 581

Query: 538 LRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           L PE+   RK  L+QSLMEER KL+ QA   A+ H ++M+LY E
Sbjct: 582 LNPEQDVERKGSLFQSLMEERNKLKLQATKTAAFHRDLMNLYHE 625

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840849|ref|XP_002888306.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334147|gb|EFH64565.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/593 (58%), Positives = 447/593 (75%), Gaps = 43/593 (7%)

Query: 1   MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ---SQPLDLSTIEDIAGILNSAVSG 57
           MG +  + A+IP G S EES+ LL++T+AALA M+   SQ L LS I+D++ I+  AV+G
Sbjct: 79  MGLSATKNAEIPVGNSPEESRNLLDETAAALAAMEMMESQRLGLSEIQDLSDIVERAVAG 138

Query: 58  QLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIG 117
           QLL+  E+C+VR TL A  +V++KL +AA  D    +R SPL+ L++ C+F   L++KIG
Sbjct: 139 QLLTVRELCSVRSTLMAATSVFQKLRKAAISD----KRVSPLVGLVQGCDFKDTLQQKIG 194

Query: 118 FCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSR 177
           FCIDC + +ILDRASEDLE+IR+ER+RNME LDSLLKK++ QIFQAGGID+PLIT+RRSR
Sbjct: 195 FCIDCNMSMILDRASEDLEIIRSERRRNMEKLDSLLKKISTQIFQAGGIDRPLITQRRSR 254

Query: 178 MCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL 237
           MCV I+A+HK LLP G+ L+VSSS AT ++EPK AVE NNMEVR +NSE AEE AILS+L
Sbjct: 255 MCVAIRATHKSLLPGGVVLSVSSSRATCYIEPKEAVELNNMEVRHANSEKAEEMAILSIL 314

Query: 238 TAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQ---------SHVSFDS 288
           T+E++ ++++I +L+DR+LE+D+AFARA  A+WM+GV P ++S+          H S   
Sbjct: 315 TSEVSMAQKDILHLLDRILELDIAFARASHAKWMNGVYPNVTSEHTKTPGLGGDHKSL-- 372

Query: 289 SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE 348
           S++I+  +HPLLLGS L                        GS + G+  FPVPIDIKVE
Sbjct: 373 SVDIDSAQHPLLLGSVL------------------------GSPNDGMV-FPVPIDIKVE 407

Query: 349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL 408
              +VVVI+GPNTGGKTA +KTLGL SLMSK+G+YLPAKN PRLPWFD ILADIGD QSL
Sbjct: 408 SRAKVVVISGPNTGGKTALLKTLGLISLMSKSGMYLPAKNCPRLPWFDFILADIGDPQSL 467

Query: 409 EQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAV 468
           EQ+LSTFSGHISRI  IL++ S  SLVL+DEI SGTDPSEGVALATSILQY+++RV +AV
Sbjct: 468 EQSLSTFSGHISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAV 527

Query: 469 VTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKII 528
           V+THY DLS LKD + +F+NAA EFS+ETL+PT+R+LWGSTG SNAL +AKSIGF+  I+
Sbjct: 528 VSTHYGDLSRLKDNEPQFQNAAMEFSMETLQPTFRVLWGSTGLSNALTVAKSIGFNTGIL 587

Query: 529 QRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           + A K  E+L PE+   RK  L+QSL+EER KL+ QA    + H ++M+LY E
Sbjct: 588 ENAHKWTEKLNPEQDVERKGSLFQSLVEERNKLKLQASKTEAFHRDLMNLYHE 640

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195837|gb|EEC78264.1| hypothetical protein OsI_17950 [Oryza sativa Indica Group]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 317/585 (54%), Positives = 436/585 (74%), Gaps = 19/585 (3%)

Query: 2   GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLS 61
           G A   + ++P G+S EES++LL QT+AA  +      D   +ED++  + +A   +LL+
Sbjct: 92  GRAACGEGRVPVGRSREESERLLEQTAAAALLPAPL--DFGGVEDVSSAIAAAAGARLLA 149

Query: 62  PSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCID 121
             EIC V R++RA   V+ +L   +E   D  + Y+PLL+++++C+FLTEL ++I FC+D
Sbjct: 150 VREICGVGRSIRAARRVFDQLKTLSEETPDG-RSYTPLLDIMQDCDFLTELVQRIEFCLD 208

Query: 122 CKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVG 181
             L ++LDRAS+ L  IR ER++N++ L+SLL+  + +IFQ GGID P++TKRRSRMCVG
Sbjct: 209 YTLSVVLDRASDKLATIRKERRKNIDMLESLLRDTSTKIFQGGGIDSPVVTKRRSRMCVG 268

Query: 182 IKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEI 241
           +KASHK+L+P GI L+ S SGATYFMEP+ A+  NNMEV+LS  E AEE AIL LLT+ I
Sbjct: 269 VKASHKHLVPGGIVLSSSGSGATYFMEPRDAIRLNNMEVKLSGDERAEELAILGLLTSSI 328

Query: 242 AKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILS-----SQSHVSFDSSINIEGIK 296
           A SE +I++LM ++LE+DLA AR  +A W++ V P  +     +Q + + + S+ IEGI+
Sbjct: 329 ADSEMKIRHLMGKILELDLACARGSYALWINAVRPAFTDRDSDTQLNPNSECSVFIEGIQ 388

Query: 297 HPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVI 356
           HPLLL    +SLS    ++   K  + +  +        +S  P+P+D++V  +TR++VI
Sbjct: 389 HPLLLE---QSLSMVKESTGVGKGQLSDEHL--------VSPMPIPLDMQVRNDTRIIVI 437

Query: 357 TGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFS 416
           +GPNTGGKTA+MKTLGLASLMSKAG++ PAK  PRLPWFD +LADIGDHQSLE +LSTFS
Sbjct: 438 SGPNTGGKTATMKTLGLASLMSKAGMFFPAKGTPRLPWFDQVLADIGDHQSLEHSLSTFS 497

Query: 417 GHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL 476
           GHISR+  I+++VS++SLVLIDEIGSGTDPS+GVAL+TSIL+YL  R+ LA+VTTHYADL
Sbjct: 498 GHISRLRKIVQVVSKDSLVLIDEIGSGTDPSDGVALSTSILKYLASRLNLAIVTTHYADL 557

Query: 477 SCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE 536
           S LK  D RFENAA EF LETL+PTY+ILWGSTG+SNAL+IAKSIGFD+K++ RAQ+ VE
Sbjct: 558 SRLKAVDDRFENAAMEFCLETLQPTYQILWGSTGNSNALSIAKSIGFDQKVLARAQEWVE 617

Query: 537 RLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRE 581
           +L P++Q+ R+  LY SL++ER+ LESQA  AAS+ +++  LY E
Sbjct: 618 KLLPDKQKERQGLLYGSLLDERKLLESQANEAASVVSDVERLYNE 662

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
TIGR_CMR|BA_4794	786	BA_4794 "MutS2 family protein"	0.378	0.300	0.410	4.6e-61
UNIPROTKB|Q3ABU1	777	mutS2 "MutS2 protein" [Carboxy	0.404	0.324	0.391	6.1e-61
TIGR_CMR|CHY_1564	777	CHY_1564 "DNA mismatch repair	0.404	0.324	0.391	6.1e-61
UNIPROTKB|Q720J7	785	mutS2 "MutS2 protein" [Listeri	0.382	0.303	0.418	8.7e-59
UNIPROTKB|Q81YJ6	633	BAS3289 "Putative MutS family	0.402	0.396	0.335	3.8e-56
TIGR_CMR|BA_3547	633	BA_3547 "MutS family protein,	0.402	0.396	0.335	3.8e-56
UNIPROTKB|Q76DY7	744	mutS2 "MutS2 protein" [Thermus	0.333	0.279	0.451	5.4e-55
TIGR_CMR|GSU_0547	792	GSU_0547 "MutS2 family protein	0.349	0.275	0.412	2.8e-49
UNIPROTKB|A8HMH7	1204	CHLREDRAFT_146712 "Predicted p	0.274	0.142	0.491	1.1e-47
UNIPROTKB|Q8TTB4	900	mutS "DNA mismatch repair prot	0.422	0.292	0.293	1.2e-21

TIGR_CMR|BA_4794 BA_4794 "MutS2 family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 454 (164.9 bits), Expect = 4.6e-61, Sum P(2) = 4.6e-61
 Identities = 99/241 (41%), Positives = 143/241 (59%)

Query:   341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
             VP +I +  +   +VITGPNTGGKT ++KT+G+  LM+++GL++P  +   +  F  I A
Sbjct:   318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377

Query:   401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
             DIGD QS+EQ+LSTFS H+  IVDILE    ESLVL DE+G+GTDP EG ALA SIL  +
Sbjct:   378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437

Query:   461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
              +R    V TTHY +L        +  NA+ EF + TL PT+++L G  G SNA  I+K 
Sbjct:   438 CNRGARVVATTHYPELKAYGYNREQVINASVEFDVNTLSPTHKLLIGVPGRSNAFEISKR 497

Query:   521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYR 580
             +G   ++I +A+  +         ++   +   L E ++  E     A +L  +   L+R
Sbjct:   498 LGLSNRVIDQARNHIST-----DTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR 552

Query:   581 E 581
             E
Sbjct:   553 E 553

GO:0003677 "DNA binding" evidence=ISS

GO:0006259 "DNA metabolic process" evidence=ISS

UNIPROTKB|Q3ABU1 mutS2 "MutS2 protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 460 (167.0 bits), Expect = 6.1e-61, Sum P(2) = 6.1e-61
 Identities = 105/268 (39%), Positives = 157/268 (58%)

Query:   341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
             VP D+ +  E  +++ITGPNTGGKT ++KT+G+ ++M++AGL++PA     +  F  +  
Sbjct:   311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370

Query:   401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
             DIGD QS+ Q+LSTFS H+  +  ILE      LVL+DE+G+GTDP EG ALA +IL+ L
Sbjct:   371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430

Query:   461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
             R +    V TTH ++L+    +  R ENA+ EF  E+L+PTYR+  G  G SNAL IA+ 
Sbjct:   431 RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQG 490

Query:   521 IGFDRKIIQRAQ-----------KLVERLRPERQQHRKSE-----LYQSLMEERRKLESQ 564
             +G   +II++A+           KL+  +  E++Q  K++     L  SL E+  KL  +
Sbjct:   491 LGLKEQIIEKAKSFLKEEELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDE 550

Query:   565 ARTAASLHAEIMDLYREDSTSASISVYR 592
                      EI+  YRE      + + R
Sbjct:   551 LENLEKTKEEIIRKYREKYQQKLLEIER 578

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|CHY_1564 CHY_1564 "DNA mismatch repair protein MutS" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 460 (167.0 bits), Expect = 6.1e-61, Sum P(2) = 6.1e-61
 Identities = 105/268 (39%), Positives = 157/268 (58%)

Query:   341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
             VP D+ +  E  +++ITGPNTGGKT ++KT+G+ ++M++AGL++PA     +  F  +  
Sbjct:   311 VPFDLTLGKEFDLLIITGPNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYV 370

Query:   401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
             DIGD QS+ Q+LSTFS H+  +  ILE      LVL+DE+G+GTDP EG ALA +IL+ L
Sbjct:   371 DIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEEL 430

Query:   461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
             R +    V TTH ++L+    +  R ENA+ EF  E+L+PTYR+  G  G SNAL IA+ 
Sbjct:   431 RGKKVKVVATTHTSELAAYAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQG 490

Query:   521 IGFDRKIIQRAQ-----------KLVERLRPERQQHRKSE-----LYQSLMEERRKLESQ 564
             +G   +II++A+           KL+  +  E++Q  K++     L  SL E+  KL  +
Sbjct:   491 LGLKEQIIEKAKSFLKEEELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDE 550

Query:   565 ARTAASLHAEIMDLYREDSTSASISVYR 592
                      EI+  YRE      + + R
Sbjct:   551 LENLEKTKEEIIRKYREKYQQKLLEIER 578

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

UNIPROTKB|Q720J7 mutS2 "MutS2 protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 459 (166.6 bits), Expect = 8.7e-59, Sum P(2) = 8.7e-59
 Identities = 102/244 (41%), Positives = 147/244 (60%)

Query:   344 DIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
             DI +  +   +VITGPNTGGKT ++KTLGL +LM+++GL +PA+    +  F+ + ADIG
Sbjct:   321 DIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIG 380

Query:   404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
             D QS+EQ+LSTFS H++ IV IL  V+++SL+L DE+G+GTDP EG ALA +IL     +
Sbjct:   381 DEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAK 440

Query:   464 VGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF 523
                 V TTHY +L           NA+ EF++ETL PTY++L G  G SNA +I++ +G 
Sbjct:   441 GASVVATTHYPELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPGRSNAFDISRRLGL 500

Query:   524 DRKIIQRAQKLVERLRPERQQ-----HRKSELYQSLMEERRKLESQA-RTAASLHAEIMD 577
                II  A+ LV+    +          K  L ++  EE R+L   A      L  EI +
Sbjct:   501 SENIITEARSLVDTESADLNDMISSLEEKRNLAETEYEEARELARGAGNLLKDLQKEISN 560

Query:   578 LYRE 581
              Y++
Sbjct:   561 YYQQ 564

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q81YJ6 BAS3289 "Putative MutS family protein" [Bacillus anthracis (taxid:1392)]

 Score = 407 (148.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 86/256 (33%), Positives = 151/256 (58%)

Query:   341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
             VP++ ++    R ++ITGPN GGKT  +KT+GL +L + +GL++       +  F+ +  
Sbjct:   313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372

Query:   401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
             DIGD+QS+E  LSTFS H+  + +I+ + +  +L+L DEIGSGT+P+EG ALA SIL+  
Sbjct:   373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432

Query:   461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
                  + V +THY ++    +    F NAA +F+ ETL P Y+++ G +G+SNAL IA  
Sbjct:   433 YLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIANK 492

Query:   521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQ-SLMEERRK--LESQARTAASL--HAEI 575
             +    ++++RA+  +       ++  +S++ +   ++E+R+   E +     +L  H + 
Sbjct:   493 MNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQEKRENHYEYKIGDRVNLLDHDDF 552

Query:   576 MDLYREDSTSASISVY 591
               +Y+E     ++ VY
Sbjct:   553 GIIYKEKDNFYNVVVY 568

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|BA_3547 BA_3547 "MutS family protein, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 407 (148.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 86/256 (33%), Positives = 151/256 (58%)

Query:   341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
             VP++ ++    R ++ITGPN GGKT  +KT+GL +L + +GL++       +  F+ +  
Sbjct:   313 VPLNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFV 372

Query:   401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
             DIGD+QS+E  LSTFS H+  + +I+ + +  +L+L DEIGSGT+P+EG ALA SIL+  
Sbjct:   373 DIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEF 432

Query:   461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
                  + V +THY ++    +    F NAA +F+ ETL P Y+++ G +G+SNAL IA  
Sbjct:   433 YLAGCITVASTHYGEIKRFSEMHDDFMNAAMQFNSETLEPLYKLVIGKSGESNALWIANK 492

Query:   521 IGFDRKIIQRAQKLVERLRPERQQHRKSELYQ-SLMEERRK--LESQARTAASL--HAEI 575
             +    ++++RA+  +       ++  +S++ +   ++E+R+   E +     +L  H + 
Sbjct:   493 MNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQEKRENHYEYKIGDRVNLLDHDDF 552

Query:   576 MDLYREDSTSASISVY 591
               +Y+E     ++ VY
Sbjct:   553 GIIYKEKDNFYNVVVY 568

GO:0003674 "molecular_function" evidence=ND

GO:0006259 "DNA metabolic process" evidence=ISS

UNIPROTKB|Q76DY7 mutS2 "MutS2 protein" [Thermus thermophilus (taxid:274)]

 Score = 442 (160.7 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 97/215 (45%), Positives = 140/215 (65%)

Query:   350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
             + R+++I+GPN GGKTA +KTLGLA LM+++GL++ A+    L W D + ADIGD QSL+
Sbjct:   307 KNRILLISGPNMGGKTALLKTLGLAVLMAQSGLFVAAEK-ALLAWPDRVYADIGDEQSLQ 365

Query:   410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
             +NLSTF+GH+ R+ ++LE  +  SLVLIDE+GSGTDP EG AL+ +IL+ L +R    +V
Sbjct:   366 ENLSTFAGHLRRLREMLEEATSHSLVLIDELGSGTDPEEGAALSQAILEALLERGVKGMV 425

Query:   470 TTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQ 529
             TTH + L          +NA+  F LE LRPTY ++ G  G S AL IA+ +    ++++
Sbjct:   426 TTHLSPLKAFAQGREGIQNASMRFDLEALRPTYELVLGVPGRSYALAIARRLALPEEVLK 485

Query:   530 RAQKLVERLRPERQQHRKSELYQSLMEERRKLESQ 564
             RA+ L+    PE    R   L + L  ER  LE++
Sbjct:   486 RAEALL----PEGG--RLEALLERLEAERLALEAE 514

GO:0000400 "four-way junction DNA binding" evidence=IDA

GO:0004519 "endonuclease activity" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0045910 "negative regulation of DNA recombination" evidence=IMP

GO:0030983 "mismatched DNA binding" evidence=IDA

TIGR_CMR|GSU_0547 GSU_0547 "MutS2 family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 428 (155.7 bits), Expect = 2.8e-49, Sum P(2) = 2.8e-49
 Identities = 92/223 (41%), Positives = 134/223 (60%)

Query:   352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN 411
             +V+VITGPN GGKT S+KT GL  LM+ AG+ +PA +    P    +L DIGD QS+EQ+
Sbjct:   342 QVMVITGPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQS 401

Query:   412 LSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT 471
             LSTFS H+S I  ILE   R ++VL+DE+G+GT+P +G A++ ++L  L+D+  L + TT
Sbjct:   402 LSTFSAHVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVLADLQDKGALVIATT 461

Query:   472 HYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA 531
             H  D+     K     NA+ EF  +TL P YR+  G  G S+AL IA+  G   +++  A
Sbjct:   462 HLTDIVGFVHKRDGMVNASMEFDRQTLTPLYRLTVGEPGQSHALEIARRYGLPDRVVAVA 521

Query:   532 QKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAE 574
               ++ R+  E + H   EL   L ++RR+ E     A  L  +
Sbjct:   522 TGMLSRM--ETEFH---ELLAELKDQRRRHEEALAEAERLRRD 559

GO:0003677 "DNA binding" evidence=ISS

GO:0006259 "DNA metabolic process" evidence=ISS

UNIPROTKB|A8HMH7 CHLREDRAFT_146712 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 402 (146.6 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
 Identities = 86/175 (49%), Positives = 116/175 (66%)

Query:   362 GGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR 421
             G +  + + LGLA+ M+KAGL LPA+   RLP F  +LADIGD QSL  NLSTFSGH+ R
Sbjct:   398 GEEPVTPQALGLAACMAKAGLPLPAEAPARLPAFSAVLADIGDEQSLTANLSTFSGHLRR 457

Query:   422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL-RDRVG---LAVVTTHYADLS 477
             I  +      ++L+L+DE+G+GTDP EG AL  ++L+ L    VG   L V TTH++ ++
Sbjct:   458 IQTLRGEADGKALLLLDELGTGTDPLEGAALGLALLKRLVNGGVGAGALTVATTHHSIMT 517

Query:   478 CLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQ 532
              LK  D RFENA+ EF    L PTY++LWG  G SNALNIA  +G D +++  A+
Sbjct:   518 GLKFDDPRFENASVEFDEAALAPTYKLLWGIPGRSNALNIASRLGLDEEVVSAAR 572

GO:0000228 "nuclear chromosome" evidence=IBA

GO:0000404 "loop DNA binding" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=IBA

GO:0003684 "damaged DNA binding" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0043570 "maintenance of DNA repeat elements" evidence=IBA

UNIPROTKB|Q8TTB4 mutS "DNA mismatch repair protein MutS" [Methanosarcina acetivorans C2A (taxid:188937)]

 Score = 280 (103.6 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 82/279 (29%), Positives = 149/279 (53%)

Query:   341 VPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
             VP D +++C E + +++TGPN  GK+  M+   L ++M++ G ++PA ++  +   D + 
Sbjct:   619 VPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFVPA-SYASVGIIDQVF 677

Query:   400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
               IG    L    STF   +  + +IL   S +SLVL+DEIG GT   +G ++A +++++
Sbjct:   678 TRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTSTYDGYSIAKAVVEF 737

Query:   460 LRDR--VGL-AVVTTHYADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSNA 514
             L +R  VG+ A+  THY  L+ L++K  R +N   A +     L    +I+ G+T  S  
Sbjct:   738 LHNRGKVGIRALFATHYHQLTALEEKLKRVKNYHIAVKEDGHELVFLRKIVPGATDRSYG 797

Query:   515 LNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAE 574
             +++A+  G   K+I+RA ++++ L  E       +      E  +K +S+A TA   + +
Sbjct:   798 IHVARLAGVPEKVIERANEILKELERENVLEEAED-----GENGKKKKSKA-TAR--YTQ 849

Query:   575 IMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNID 613
             ++ L+   S S S    +    V + L KV+ D +  I+
Sbjct:   850 ML-LFDPGSGSRSSEKAKGLSPVEAALKKVNPDEMTPIE 887

GO:0003684 "damaged DNA binding" evidence=IBA

GO:0006298 "mismatch repair" evidence=IBA

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0030983 "mismatched DNA binding" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	623
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	1e-138
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	1e-105
COG1193	753	COG1193, COG1193, Mismatch repair ATPase (MutS fam	1e-94
cd03280	200	cd03280, ABC_MutS2, ATP-binding cassette domain of	8e-94
smart00534	185	smart00534, MUTSac, ATPase domain of DNA mismatch	9e-59
cd03243	202	cd03243, ABC_MutS_homologs, ATP-binding cassette d	2e-47
COG0249	843	COG0249, MutS, Mismatch repair ATPase (MutS family	6e-44
cd03284	216	cd03284, ABC_MutS1, ATP-binding cassette domain of	1e-30
pfam00488	235	pfam00488, MutS_V, MutS domain V	7e-30
TIGR01070	840	TIGR01070, mutS1, DNA mismatch repair protein MutS	1e-27
cd03287	222	cd03287, ABC_MSH3_euk, ATP-binding cassette domain	4e-26
cd03285	222	cd03285, ABC_MSH2_euk, ATP-binding cassette domain	9e-26
cd03282	204	cd03282, ABC_MSH4_euk, ATP-binding cassette domain	9e-25
cd03286	218	cd03286, ABC_MSH6_euk, ATP-binding cassette domain	1e-24
cd03281	213	cd03281, ABC_MSH5_euk, ATP-binding cassette domain	2e-22
cd03283	199	cd03283, ABC_MutS-like, ATP-binding cassette domai	5e-18
PRK05399	854	PRK05399, PRK05399, DNA mismatch repair protein Mu	4e-14
pfam05192	290	pfam05192, MutS_III, MutS domain III	3e-13
smart00533	308	smart00533, MUTSd, DNA-binding domain of DNA misma	2e-12
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	8e-11
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	7e-08

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score =  421 bits (1085), Expect = e-138
 Identities = 212/571 (37%), Positives = 298/571 (52%), Gaps = 62/571 (10%)

Query: 16  SLEESQKLLNQTSAALAMMQSQP-LDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
             EE ++LL +T  A  +++ +       ++DI   L  A  G +LS  E+  + +TLR 
Sbjct: 39  DFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRY 98

Query: 75  VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASED 134
              + K+  E  E + +       L E +     L ELE++I  CID +  +  D ASE 
Sbjct: 99  FRQL-KRFIEDLEEEEE----LPILEEWVAKIRTLPELEQEIHNCIDEEGEV-KDSASEK 152

Query: 135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGI 194
           L  IR + +R    +   L+ +         +   +IT R  R  + +KA +K+ +  GI
Sbjct: 153 LRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-GI 211

Query: 195 ALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 254
             + SSSGAT ++EP+  VE NN    L N E  E   IL  L+A++AK+   +K+L   
Sbjct: 212 VHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKI 271

Query: 255 VLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSN 314
             E+D  FARA +A+ +    P+ + +        I++   +HPLL G  +         
Sbjct: 272 FDELDFIFARARYAKALKATFPLFNDEGK------IDLRQARHPLLDGEKV--------- 316

Query: 315 SNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374
                                     VP DI +  +  V+VITGPNTGGKT ++KTLGLA
Sbjct: 317 --------------------------VPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLA 350

Query: 375 SLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESL 434
           +LM+K+GL +PA     +P F  I ADIGD QS+EQ+LSTFSGH++ IV ILE   + SL
Sbjct: 351 ALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSL 410

Query: 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494
           VL DE+G+GTDP EG ALA SIL+YLR R    + TTHY +L  L       ENA+ EF 
Sbjct: 411 VLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFD 470

Query: 495 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLV----ERLRPERQQHRKSEL 550
            ETLRPTYR+L G  G SNA  IAK +G    II+ A+KL+    E+L         +EL
Sbjct: 471 EETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKL---------NEL 521

Query: 551 YQSLMEERRKLESQARTAASLHAEIMDLYRE 581
             SL E  R+LE +A  A +L  E   L  E
Sbjct: 522 IASLEELERELEQKAEEAEALLKEAEKLKEE 552

Length = 782

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score =  335 bits (860), Expect = e-105
 Identities = 185/567 (32%), Positives = 274/567 (48%), Gaps = 57/567 (10%)

Query: 15  KSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRA 74
           KS+EES++++ + +A  ++  +        EDI  +L  A  G ++   E       +  
Sbjct: 38  KSVEESKEIIIKLTALGSIENNVRF--FGFEDIRELLKRAELGGIVKGLE------YILV 89

Query: 75  VNNVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASED 134
           + N  K +     L          L  L  N   L  LE  I  CID    +  D ASE+
Sbjct: 90  IQNALKTVKHLKVLSEHV-LDLEILFHLRLNLITLPPLENDIIACIDDDGKV-KDGASEE 147

Query: 135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGI 194
           L+ IR   K   E +   L K+      A  +   ++T R  R  + +K+  K  +  GI
Sbjct: 148 LDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIK-GI 206

Query: 195 ALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDR 254
             + SSSG T+++EP+  V+ NN   +L N E  E   IL  L+ ++ +   E+K+L   
Sbjct: 207 VHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKE 266

Query: 255 VLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSN 314
              +D   ARA +A+ + G  P+ S      F   I +E  +HPLL    +         
Sbjct: 267 FDFLDSLQARARYAKAVKGEFPMPS------FTGKIILENARHPLLKEPKV--------- 311

Query: 315 SNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLA 374
                                     VP  + ++ E RV+ ITGPNTGGKT ++KTLGL 
Sbjct: 312 --------------------------VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345

Query: 375 SLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESL 434
           +LM ++G+ +PA  H  +P+F+ I ADIGD QS+EQNLSTFSGH+  I  IL   +  SL
Sbjct: 346 ALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSL 405

Query: 435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS 494
           VL DE+G+GTDP EG ALA SIL+YL  +    ++TTHY +L  L   +   ENA+  F 
Sbjct: 406 VLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFD 465

Query: 495 LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSL 554
            ETL PTY++L G  G+S A  IA+  G    II++A+           +   + L + L
Sbjct: 466 EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFY-----GEFKEEINVLIEKL 520

Query: 555 MEERRKLESQARTAASLHAEIMDLYRE 581
               ++LE +      L  E   L +E
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKE 547

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

 Score =  306 bits (787), Expect = 1e-94
 Identities = 195/579 (33%), Positives = 288/579 (49%), Gaps = 82/579 (14%)

Query: 15  KSLEESQKLLNQTSAALAMMQSQPL-DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLR 73
             LE  ++ L++T+ AL +++ + L  L  + D++  L     G  L   E+  +   LR
Sbjct: 36  TDLELIEEELSETAEALDILEDEGLPPLGGLNDVSEALGRLEKGGRLHVEELLEISDFLR 95

Query: 74  AVNNVWKKLTEAAELDGDSLQRYSPLLELLK-----NCNFLTELEEKIGFCIDCKLLIIL 128
                             +L+R    LE +K         L++LE +I   ID   LI  
Sbjct: 96  GF---------------RALKRAIKKLERIKRTLALALIELSDLELEINIPIDDDGLI-K 139

Query: 129 DRASEDLELIRAE----RKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKA 184
           DRAS +L+ IR +     +   + L+SL++   A+  Q       ++T R  R  + +KA
Sbjct: 140 DRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQ-----DRIVTTRDGREVLPVKA 194

Query: 185 SHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKS 244
             K  +  GI  + SSSGAT ++EP+  V+ NN    L   E  EE  IL  L+A +A  
Sbjct: 195 EFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPV 253

Query: 245 EREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS 304
             E++ L++ + E+D   A+  +A+ + GV P  S+      D  + +   +HPLL    
Sbjct: 254 IPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSN------DGVLELLDARHPLL---- 303

Query: 305 LRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGK 364
                                               VP D+++  E   ++ITGPNTGGK
Sbjct: 304 ---------------------------------KEDVPNDLELGEELDRLIITGPNTGGK 330

Query: 365 TASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD 424
           T ++KTLGL  LM+++GL +PA     LP F  I ADIGD QS+EQ+LSTFS H++ IV+
Sbjct: 331 TVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVE 390

Query: 425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT 484
           ILE    +SLVL DE+GSGTDP EG ALA +IL+ L ++    V TTHY +L  L  +  
Sbjct: 391 ILEKA--DSLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALAAERE 448

Query: 485 RFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQ 544
             ENA+ EF  ETLRPTYR+L G  G SNA +IA  +G    II+ A+          ++
Sbjct: 449 GVENASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEF-----GEEK 503

Query: 545 HRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDS 583
               EL + L E R++LE +      L  E+  L   +S
Sbjct: 504 ELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANS 542

Length = 753

>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2

 Score =  286 bits (734), Expect = 8e-94
 Identities = 99/184 (53%), Positives = 128/184 (69%)

Query: 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
            VP+DI++    RV+VITGPN GGKT ++KTLGL +LM+++GL +PA     LP F+ I 
Sbjct: 17  VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIF 76

Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
           ADIGD QS+EQ+LSTFS H+  I  IL+    +SLVL+DE+GSGTDP EG ALA +IL+ 
Sbjct: 77  ADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEE 136

Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAK 519
           L +R  L + TTHY +L     K    ENA+ EF  ETL+PTYR+L G  G SNAL IA+
Sbjct: 137 LLERGALVIATTHYGELKAYAYKREGVENASMEFDPETLKPTYRLLIGVPGRSNALEIAR 196

Query: 520 SIGF 523
            +G 
Sbjct: 197 RLGL 200

MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 200

>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family

 Score =  194 bits (496), Expect = 9e-59
 Identities = 67/184 (36%), Positives = 108/184 (58%), Gaps = 4/184 (2%)

Query: 353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNL 412
           VV+ITGPN GGK+  ++ + L  +M++ G ++PA++   LP FD I   IG   SL Q L
Sbjct: 1   VVIITGPNMGGKSTYLRQVALIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGL 59

Query: 413 STFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTT 471
           STF   +    +IL+  ++ SLVL+DE+G GT   +G+A+A +IL+YL +++G   +  T
Sbjct: 60  STFMVEMKETANILKNATKNSLVLLDELGRGTSTYDGLAIAAAILEYLLEKIGARTLFAT 119

Query: 472 HYADLSCLKDKDTRFENAATEFSLET--LRPTYRILWGSTGDSNALNIAKSIGFDRKIIQ 529
           HY +L+ L D      N       ET  +   Y++  G  G S  + +AK  G  +++I+
Sbjct: 120 HYHELTKLADNHPGVRNLHMSALEETENITFLYKLKPGVAGKSYGIEVAKLAGLPKEVIE 179

Query: 530 RAQK 533
           RA++
Sbjct: 180 RAKR 183

Length = 185

>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs

 Score =  164 bits (418), Expect = 2e-47
 Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 4/186 (2%)

Query: 340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
            VP DI +    R+++ITGPN GGK+  ++++GLA L+++ G ++PA+    +P  D I 
Sbjct: 19  FVPNDINLG-SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAE-SASIPLVDRIF 76

Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
             IG   S+    STF   +  + +IL L +  SLVLIDE+G GT  +EG+A+A ++L++
Sbjct: 77  TRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEH 136

Query: 460 LRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNI 517
           L ++    +  TH+ +L+ L ++    +N   E   +   L  TY+++ G    S AL I
Sbjct: 137 LLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGLTFTYKLIDGICDPSYALQI 196

Query: 518 AKSIGF 523
           A+  G 
Sbjct: 197 AELAGL 202

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202

>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

 Score =  168 bits (427), Expect = 6e-44
 Identities = 125/552 (22%), Positives = 241/552 (43%), Gaps = 76/552 (13%)

Query: 41  LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTEAAELDGDSLQRYSPLL 100
           L  + D+  +L+    G   SP ++  +R +L  +  ++K L+        S      LL
Sbjct: 339 LKKVPDLERLLSRLSLG-RASPRDLLRLRDSLEKIPEIFKLLSSL-----KSESDLLLLL 392

Query: 101 ELLKNCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENLDSLLK 154
           E +++ ++L EL E +   I+          II +  + +L+ +R        N    + 
Sbjct: 393 EDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLL----NNAKEWIA 448

Query: 155 KVAAQIFQAGGIDKPLITKRRSRM--CVGIKASHKYLLPDGIALNVSSSGATYFMEPKGA 212
           K+  +  +  GI   L  K        + +  S+  L+PD      +   A  F  P   
Sbjct: 449 KLELEERERTGIKS-LKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTP--- 504

Query: 213 VEFNNMEVRLSNSE---IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ 269
            E   +E +L ++E   +A E  +   L  +I     E++ L   + E+D+  + A  A 
Sbjct: 505 -ELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAA 563

Query: 270 WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTV 329
             + V P           + + I+  +HP+                      VE      
Sbjct: 564 EQNYVRPEFVD------SNDLEIKEGRHPV----------------------VE------ 589

Query: 330 GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
                 + +  VP DI +    R+++ITGPN GGK+  ++ + L  ++++ G ++PA+  
Sbjct: 590 ----AVLDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK- 644

Query: 390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
            R+   D I   IG    L    STF   +    +IL+  +  SLV++DEIG GT   +G
Sbjct: 645 ARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDG 704

Query: 450 VALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRIL 505
           +A+A ++L+YL +++G   +  THY +L+ L++K  + +N   +A E     +   Y++ 
Sbjct: 705 LAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEG-GDITFLYKVK 763

Query: 506 WGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL-----RPERQQHRK-SELYQSLMEERR 559
            G    S  +++AK  G   ++I+RA++++  L         + ++K   L+  +++  +
Sbjct: 764 PGIADKSYGIHVAKLAGLPEEVIERAREILAELEKESRSSNLELNQKDLSLFPKVLKALK 823

Query: 560 KLESQARTAASL 571
            L+    T  +L
Sbjct: 824 SLDPDELTPRAL 835

Length = 843

>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog

 Score =  119 bits (300), Expect = 1e-30
 Identities = 60/198 (30%), Positives = 111/198 (56%), Gaps = 6/198 (3%)

Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           VP D +++ E ++++ITGPN  GK+  ++ + L +L+++ G ++PA     +   D I  
Sbjct: 20  VPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFT 78

Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
            IG    L    STF   +    +IL   +  SLVL+DEIG GT   +G+++A +I++YL
Sbjct: 79  RIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL 138

Query: 461 RDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALN 516
            +++G   +  THY +L+ L+ K  R +N   A  E     +   ++I+ G+   S  + 
Sbjct: 139 HEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKG-GGVVFLHKIVEGAADKSYGIE 197

Query: 517 IAKSIGFDRKIIQRAQKL 534
           +A+  G   ++I+RA+++
Sbjct: 198 VARLAGLPEEVIERAREI 215

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 216

>gnl|CDD|215944 pfam00488, MutS_V, MutS domain V

 Score =  117 bits (295), Expect = 7e-30
 Identities = 56/204 (27%), Positives = 112/204 (54%), Gaps = 5/204 (2%)

Query: 340 PVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLI 398
            VP D+ + +  +R+++ITGPN GGK+  ++ + L  +M++ G ++PA+   R+   D I
Sbjct: 31  FVPNDVSLGKERSRILLITGPNMGGKSTYLRQVALIVIMAQIGSFVPAE-SARIGIVDRI 89

Query: 399 LADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458
              IG    L    STF   +    +IL   + +SLV++DE+G GT   +G+A+A ++ +
Sbjct: 90  FTRIGASDDLASGRSTFMVEMLETANILHNATDKSLVILDELGRGTSTYDGLAIAWAVAE 149

Query: 459 YLRDRVG-LAVVTTHYADLSCLKDKDTRFENA--ATEFSLETLRPTYRILWGSTGDSNAL 515
           +L +++    +  THY +L+ L +K    +N   A   +   +   Y++  G+   S  +
Sbjct: 150 HLAEKIRARTLFATHYHELTKLAEKLPAVKNVHMAAVETNGDIVFLYKVKPGAADKSYGI 209

Query: 516 NIAKSIGFDRKIIQRAQKLVERLR 539
           ++A+  G    +++RA++++  L 
Sbjct: 210 HVAELAGLPESVVERAREVLAELE 233

This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterized in, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 235

>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS

 Score =  118 bits (297), Expect = 1e-27
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 14/229 (6%)

Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           VP D+++    R+++ITGPN GGK+  M+   L +L+++ G ++PA++   LP FD I  
Sbjct: 582 VPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES-AELPLFDRIFT 640

Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
            IG    L    STF   ++   +IL   +  SLVL DEIG GT   +G+ALA +I +YL
Sbjct: 641 RIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYL 700

Query: 461 RDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALN 516
            + +    +  THY +L+ L++     +N   AA E +  T+   +++L G    S  L 
Sbjct: 701 HEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHN-GTIVFLHQVLPGPASKSYGLA 759

Query: 517 IAKSIGFDRKIIQRAQKLVERLR--------PERQQHRKSELYQSLMEE 557
           +A   G  +++I RA++++ +L         P+R+    +    SL +E
Sbjct: 760 VAALAGLPKEVIARARQILTQLEARSTESEAPQRKAQTSAPEQISLFDE 808

[DNA metabolism, DNA replication, recombination, and repair]. Length = 840

>gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog

 Score =  106 bits (266), Expect = 4e-26
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 20/207 (9%)

Query: 341 VPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
           VP DI +  E     +ITGPN GGK++ ++ + L ++M++ G ++PA +   L  FD +L
Sbjct: 20  VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVL 78

Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
             +G   S++  +STF   +S    IL   +  SLV++DE+G GT   +G+A+A + L Y
Sbjct: 79  TRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHY 138

Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFS---LETLRP-----------TYRI 504
           L +    L +  THY  L  +     RFE +   +    LE+ +             Y++
Sbjct: 139 LLEEKKCLVLFVTHYPSLGEIL---RRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKL 195

Query: 505 LWGSTGDSNALNIAKSIGFDRKIIQRA 531
           + G    S  LN+A+  G  + II RA
Sbjct: 196 VRGLASRSFGLNVARLAGLPKSIISRA 222

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222

>gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog

 Score =  105 bits (264), Expect = 9e-26
 Identities = 61/203 (30%), Positives = 114/203 (56%), Gaps = 8/203 (3%)

Query: 341 VPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
           +P D+ +   ++R ++ITGPN GGK+  ++ +G+  LM++ G ++P  +   +P  D IL
Sbjct: 19  IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPC-DSADIPIVDCIL 77

Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
           A +G   S  + +STF   +     IL+  +  SL++IDE+G GT   +G  LA +I +Y
Sbjct: 78  ARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEY 137

Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFEN----AATEFSLETLRPTYRILWGSTGDSNA 514
           +  ++    +  TH+ +L+ L D+    +N    A T+ +  TL   Y++  G+   S  
Sbjct: 138 IATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLTMLYKVEKGACDQSFG 197

Query: 515 LNIAKSIGFDRKIIQRA-QKLVE 536
           +++A+   F +++I+ A QK +E
Sbjct: 198 IHVAELANFPKEVIEMAKQKALE 220

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222

>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog

 Score =  102 bits (255), Expect = 9e-25
 Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 1/127 (0%)

Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
            +R  +ITGPN  GK+  +K + L ++M++ G ++PA+    LP F+ +L+ + +  S+E
Sbjct: 28  SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSME 86

Query: 410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV 469
           +NLSTF+  +S    IL+    +SLVLIDE+G GT  ++G A++ +IL+ L  +      
Sbjct: 87  RNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFF 146

Query: 470 TTHYADL 476
            TH+ D+
Sbjct: 147 ATHFRDI 153

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 204

>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog

 Score =  101 bits (254), Expect = 1e-24
 Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 11/202 (5%)

Query: 340 PVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLI 398
            VP D+ +     R++V+TGPN GGK+  ++T+ LA +M++ G+ +PAK+  RL   D I
Sbjct: 18  FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSM-RLSLVDRI 76

Query: 399 LADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458
              IG    + +  STF   +S   +IL   + +SLV++DE+G GT   +G A+A ++L+
Sbjct: 77  FTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLE 136

Query: 459 YLRDRVG-LAVVTTHYADL--SCLKDKDTRFENAATEFS------LETLRPTYRILWGST 509
           YL  +V  L + +THY  L     +    R  + A          +  +   Y+++ G  
Sbjct: 137 YLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVKNESDPTIRDITFLYKLVAGIC 196

Query: 510 GDSNALNIAKSIGFDRKIIQRA 531
             S  L +A   G    +++RA
Sbjct: 197 PKSYGLYVALMAGIPDGVVERA 218

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 218

>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 17/194 (8%)

Query: 341 VPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
           VP D ++      ++VITGPN+ GK+  +K + L   ++  G ++PA +   +   D I 
Sbjct: 18  VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA-DSATIGLVDKIF 76

Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
             +   +S+    S F   + ++   L L +R SLVLIDE G GTD  +G  L  + +++
Sbjct: 77  TRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH 136

Query: 460 LRDRVGLA---VVTTHYADL---SCLKDK--------DTRFENAATEFSLETLRPTYRIL 505
           L  R       +V+TH+ +L   S L ++        +      +T    E +   YR++
Sbjct: 137 LLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEVLLNPTSTS-PNEDITYLYRLV 195

Query: 506 WGSTGDSNALNIAK 519
            G    S A++ AK
Sbjct: 196 PGLADTSFAIHCAK 209

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 213

>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 47/181 (25%), Positives = 92/181 (50%), Gaps = 12/181 (6%)

Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA-DIGDHQSL 408
           +   ++ITG N  GK+  ++T+G+  ++++AG  + A +   LP   +  +  + D   L
Sbjct: 24  KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSF-ELPPVKIFTSIRVSD--DL 80

Query: 409 EQNLSTFSGHISRIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL 466
              +S F   + R+ +I+E   +    L L+DEI  GT+  E  A + ++L++L+++  +
Sbjct: 81  RDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI 140

Query: 467 AVVTTHYADLSCLKDKDTRFENAATEFSLETLRPT----YRILWGSTGDSNALNIAKSIG 522
            +++TH  +L+ L D D+   N    F  +         Y++  G +   NAL + K IG
Sbjct: 141 GIISTHDLELADLLDLDSAVRN--YHFREDIDDNKLIFDYKLKPGVSPTRNALRLMKKIG 198

Query: 523 F 523
            
Sbjct: 199 I 199

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 199

>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional

 Score = 75.5 bits (187), Expect = 4e-14
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 48/234 (20%)

Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           VP D  ++ E R+++ITGPN  GK+  M+ + L  L+++ G ++PA+   R+   D I  
Sbjct: 597 VPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAE-SARIGIVDRIFT 655

Query: 401 DIG--DHQSLEQNL----STFSGHISRIV------DILELVSRESLVLIDEIGSGT---D 445
            IG  D      +L    STF      +V      +IL   +  SLVL+DEIG GT   D
Sbjct: 656 RIGASD------DLASGRSTF------MVEMTETANILNNATERSLVLLDEIGRGTSTYD 703

Query: 446 PSEGVALATSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATE------FSL 495
              G+++A ++ +YL D++G   +  THY +L+ L++K    +N   A  E      F  
Sbjct: 704 ---GLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVF-- 758

Query: 496 ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSE 549
             L    +++ G+   S  +++AK  G    +I+RA++++ +L    ++ + + 
Sbjct: 759 --LH---KVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESASEKAKAAS 807

Length = 854

>gnl|CDD|218489 pfam05192, MutS_III, MutS domain III

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 15/255 (5%)

Query: 15  KSLEESQKLLNQTSAALAMMQSQ-PLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLR 73
             L+E    L+     L  ++ +    L  I D+  +L+    G+  SP ++ A+R +L 
Sbjct: 46  TDLDEINARLDAVEELLEDLREELREALKGIPDLERLLSRLALGRA-SPRDLLALRSSLE 104

Query: 74  AVNNVWKKLTEAAEL-DGDSLQRYSPLLELLKNC-NFLTELEEKIGFCIDCKLLIILDRA 131
           A+  + K L  A  L D         LLELL+   +    L  + G        +I D  
Sbjct: 105 ALPALRKLLASAPLLADLADQLPLPELLELLERAIDEDPPLSLRDGG-------VIKDGY 157

Query: 132 SEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLP 191
             +L+ +RA      E L  LL++   +                  + V  KAS    +P
Sbjct: 158 DPELDELRALLDELREKLAELLERERERTGIKSLKVGYNRVFGYYVIEV--KASKADKVP 215

Query: 192 DGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSERE-IKY 250
               +  S++            E     +      +A E  IL  L   +     E ++ 
Sbjct: 216 GDY-IRRSTTKNAVRFTTPELKELERKLLEAEERALALEKEILEELLERVLSEYAELLQE 274

Query: 251 LMDRVLEIDLAFARA 265
           L D + E+D+  + A
Sbjct: 275 LADAIAELDVLLSLA 289

This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam01624 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterized in. Length = 290

>gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS family

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 52/270 (19%), Positives = 97/270 (35%), Gaps = 32/270 (11%)

Query: 41  LSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWKKLTE---------AAELDGD 91
           L  I D+  +L+  +     SP ++  +  +L  +  + + L              +   
Sbjct: 58  LKRIPDLERLLSR-IERGRASPRDLLRLYDSLEGLKEIRQLLESLDGPLLGLLLKVILEP 116

Query: 92  SLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDS 151
            L+    LLELL + +    LE   G        +I D    +L+ +R + +   E L+ 
Sbjct: 117 LLELLELLLELLNDDD---PLEVNDGG-------LIKDGFDPELDELREKLEELEEELEE 166

Query: 152 LLKKVAAQIFQAGGIDKPLITKRRSR-MCVGIKASHKYLLPDGIALNVSSSGATYFMEPK 210
           LLKK   ++    GID   +   +     + +  S    +P       S      F    
Sbjct: 167 LLKKEREEL----GIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNTERF-TTP 221

Query: 211 GAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW 270
              E  N  +         E  IL  L  ++ +   E++ L + + E+D+  + A  A  
Sbjct: 222 ELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAE 281

Query: 271 MDGVCPILSSQSHVSFDSSINIEGIKHPLL 300
            + V P             + I+  +HP+L
Sbjct: 282 GNYVRPEFVD------SGELEIKNGRHPVL 305

Length = 308

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR----LPWFDLILADIGDH 405
           E  + +ITGPN  GK+  +  +GLA   +++     +             +LI   +   
Sbjct: 20  EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQ-- 77

Query: 406 QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465
             L       S  ++ I+  L  +    L ++DEI  G DP +G ALA +IL+    +  
Sbjct: 78  --LSGGEKELS-ALALIL-ALASLKPRPLYILDEIDRGLDPRDGQALAEAILE-HLVKGA 132

Query: 466 LAVVTTHYADLSCLKDK 482
             +V TH  +L+ L DK
Sbjct: 133 QVIVITHLPELAELADK 149

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 15/138 (10%)

Query: 342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL---PWFDLI 398
            + + ++    +V + GPN  GK+  ++ +        AGL  P      +       L 
Sbjct: 17  NVSLTLK-AGEIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGKDIAKLP 67

Query: 399 LADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ 458
           L ++         LS   G   R+     L+    L+L+DE  SG DP+    L   + +
Sbjct: 68  LEELRRRIGYVPQLSG--GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125

Query: 459 YLRDRVGLAVVTTHYADL 476
            L +     ++ TH  +L
Sbjct: 126 -LAEEGRTVIIVTHDPEL 142

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	623
PRK00409	782	recombination and DNA strand exchange inhibitor pr	100.0
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	100.0
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	100.0
PRK05399	854	DNA mismatch repair protein MutS; Provisional	100.0
COG1193	753	Mismatch repair ATPase (MutS family) [DNA replicat	100.0
COG0249	843	MutS Mismatch repair ATPase (MutS family) [DNA rep	100.0
KOG0218	1070	consensus Mismatch repair MSH3 [Replication, recom	100.0
KOG0219	902	consensus Mismatch repair ATPase MSH2 (MutS family	100.0
KOG0221	849	consensus Mismatch repair ATPase MSH5 (MutS family	100.0
KOG0217	1125	consensus Mismatch repair ATPase MSH6 (MutS family	100.0
KOG0220	867	consensus Mismatch repair ATPase MSH4 (MutS family	100.0
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	100.0
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	100.0
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	100.0
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	100.0
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	100.0
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	100.0
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	100.0
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	100.0
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	100.0
smart00533	308	MUTSd DNA-binding domain of DNA mismatch repair MU	100.0
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	100.0
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.98
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.97
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.96
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.95
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.95
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.95
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.95
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.95
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.95
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.95
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.94
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.94
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.94
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.94
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.94
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.94
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.94
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.94
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.94
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.94
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.94
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.94
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.94
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.94
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.94
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.94
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.94
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.94
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.94
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.94
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.94
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.94
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.94
PRK10908	222	cell division protein FtsE; Provisional	99.94
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.94
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.94
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.94
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.94
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.94
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.94
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.94
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.94
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.93
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.93
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.93
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.93
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.93
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.93
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.93
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.93
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.93
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.93
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.93
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.93
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.93
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.93
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.93
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.93
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.93
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.93
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.93
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.93
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.93
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.93
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.93
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.93
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.93
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.93
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.93
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.93
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.93
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.93
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.93
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.93
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.93
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.93
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.93
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.93
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.93
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG0488	530	Uup ATPase components of ABC transporters with dup	99.93
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.93
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.93
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.93
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.93
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.93
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.93
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.93
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.93
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.93
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.93
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.93
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.93
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.92
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.92
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.92
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.92
PRK10938	490	putative molybdenum transport ATP-binding protein	99.92
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.92
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.92
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.92
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.92
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.92
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.92
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.92
cd03246	173	ABCC_Protease_Secretion This family represents the	99.92
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.92
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.92
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.92
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.92
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.92
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.92
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.92
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.92
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.92
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.92
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.92
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.92
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.92
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.92
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.92
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.92
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.92
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.92
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.92
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.92
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.92
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.92
COG0488	530	Uup ATPase components of ABC transporters with dup	99.92
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.92
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.92
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.92
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.92
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.92
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.92
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.92
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.92
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.92
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.92
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.92
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.92
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.91
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.91
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.91
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.91
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.91
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.91
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.91
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.91
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.91
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.91
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.91
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.91
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.91
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.91
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.91
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.91
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.91
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.91
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.91
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.91
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.91
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.91
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.91
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.91
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.91
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.91
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.91
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG4559	259	ABC-type hemin transport system, ATPase component	99.91
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.91
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.91
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.91
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.91
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.91
PRK10938	490	putative molybdenum transport ATP-binding protein	99.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.9
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.9
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.9
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.9
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.9
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.9
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.9
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.9
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.9
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.9
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.9
PRK11147	635	ABC transporter ATPase component; Reviewed	99.9
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.9
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.9
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.9
PRK13409	590	putative ATPase RIL; Provisional	99.9
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.9
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.9
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.9
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.89
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.89
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.89
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.89
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.89
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.89
PLN03073	718	ABC transporter F family; Provisional	99.89
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.89
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.89
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.89
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.89
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.89
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.89
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.89
COG1123	539	ATPase components of various ABC-type transport sy	99.89
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.89
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.89
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.88
COG4181	228	Predicted ABC-type transport system involved in ly	99.88
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.88
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.88
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.88
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.88
PLN03073	718	ABC transporter F family; Provisional	99.88
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.88
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.88
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.88
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.87
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.87
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.87
COG4987	573	CydC ABC-type transport system involved in cytochr	99.87
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.87
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.87
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.87
COG1123	539	ATPase components of various ABC-type transport sy	99.87
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.87
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.87
PRK13409	590	putative ATPase RIL; Provisional	99.87
PLN03211	659	ABC transporter G-25; Provisional	99.87
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.87
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.86
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.86
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.86
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.86
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.86
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.86
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.86
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.86
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.86
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.86
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.86
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.86
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.86
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.86
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.86
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.85
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.85
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.85
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.85
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.85
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.85
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.85
COG4988	559	CydD ABC-type transport system involved in cytochr	99.85
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.84
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.84
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.84
KOG0062	582	consensus ATPase component of ABC transporters wit	99.84
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.84
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.83
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.82
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.82
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.82
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.81
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.81
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.81
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.8
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.8
PLN03140	1470	ABC transporter G family member; Provisional	99.8
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.8
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.8
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.8
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.8
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.79
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.79
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.79
COG4172	534	ABC-type uncharacterized transport system, duplica	99.78
PLN03232	1495	ABC transporter C family member; Provisional	99.78
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.78
PLN03130	1622	ABC transporter C family member; Provisional	99.78
PTZ00243	1560	ABC transporter; Provisional	99.78
PLN03130	1622	ABC transporter C family member; Provisional	99.78
PLN03232	1495	ABC transporter C family member; Provisional	99.78
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.78
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.77
COG4172	534	ABC-type uncharacterized transport system, duplica	99.77
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.77
PTZ00243	1560	ABC transporter; Provisional	99.76
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.76
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.76
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.76
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.75
PLN03140	1470	ABC transporter G family member; Provisional	99.74
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.73
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.73
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.73
KOG0062	582	consensus ATPase component of ABC transporters wit	99.73
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.72
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.72
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.72
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.71
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.71
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.7
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.69
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.67
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.67
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.65
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.64
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.64
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.63
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.61
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.6
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.6
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.6
COG4178	604	ABC-type uncharacterized transport system, permeas	99.59
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.58
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.55
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.54
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.49
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.48
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.48
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.46
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.46
PF05192	204	MutS_III: MutS domain III C-terminus.; InterPro: I	99.45
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.44
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.38
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.37
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.35
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.32
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.22
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.19
COG3910	233	Predicted ATPase [General function prediction only	99.14
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.13
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.1
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.09
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.09
PRK13695	174	putative NTPase; Provisional	99.0
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.99
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.9
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.88
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.81
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.72
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.7
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.7
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.69
PRK10869	553	recombination and repair protein; Provisional	98.67
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.62
PRK06067	234	flagellar accessory protein FlaH; Validated	98.6
PHA02562	562	46 endonuclease subunit; Provisional	98.51
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.51
smart00382	148	AAA ATPases associated with a variety of cellular	98.49
PRK03918	880	chromosome segregation protein; Provisional	98.48
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.47
PRK01156	895	chromosome segregation protein; Provisional	98.42
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.4
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.39
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.36
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.36
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.29
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.24
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.17
cd01128	249	rho_factor Transcription termination factor rho is	98.11
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.05
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.03
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.01
COG4637	373	Predicted ATPase [General function prediction only	98.01
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.0
PRK13830	818	conjugal transfer protein TrbE; Provisional	97.96
PRK09183	259	transposase/IS protein; Provisional	97.95
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.95
PRK02224	880	chromosome segregation protein; Provisional	97.94
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.94
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.92
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.9
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.9
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.89
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.89
PRK04296	190	thymidine kinase; Provisional	97.88
TIGR00767	415	rho transcription termination factor Rho. Members	97.85
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.82
PF05190	92	MutS_IV: MutS family domain IV C-terminus.; InterP	97.8
PRK00064	361	recF recombination protein F; Reviewed	97.79
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.79
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.78
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.75
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.73
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.73
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.72
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.71
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.66
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.62
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.62
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.6
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.58
PRK06526	254	transposase; Provisional	97.57
PRK06893	229	DNA replication initiation factor; Validated	97.56
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.55
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.54
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.53
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.52

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=100.00  E-value=1.7e-84  Score=750.58  Aligned_cols=562  Identities=38%  Similarity=0.535  Sum_probs=496.6

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVW   79 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~l~   79 (623)
                      ||++++++  +.|..+.++++++|++|.++..++. .+.+||++++|+++++.++..|+.+++.||+.|+.+|..+..++
T Consensus        26 ~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l~  103 (782)
T PRK00409         26 LGKEKVLQ--LDPETDFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLK  103 (782)
T ss_pred             HHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            69999999  8999999999999999999998885 78999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974           80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ  159 (623)
Q Consensus        80 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~  159 (623)
                      +++.....     ...++.|..++..+.+++++.+.|.+|||++| .|+|+|||+|+.||+++++....+++.+.+....
T Consensus       104 ~~l~~~~~-----~~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~  177 (782)
T PRK00409        104 RFIEDLEE-----EEELPILEEWVAKIRTLPELEQEIHNCIDEEG-EVKDSASEKLRGIRRQLRRKKSRIREKLESIIRS  177 (782)
T ss_pred             HHHHhccc-----ccchhHHHHHHHcCcCcHHHHHHHHHHhCCCC-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99975200     01367888999999999999999999999884 8999999999999999998888888888776554


Q ss_pred             HHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006974          160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA  239 (623)
Q Consensus       160 ~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L~~  239 (623)
                      .....++++.++++|++||||||+.++++.+| |++|+.|+||+|+|++|..++++||++.++..++.+++.+|+++|+.
T Consensus       178 ~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~-g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~  256 (782)
T PRK00409        178 KSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-GIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSA  256 (782)
T ss_pred             cccccccccceEEEECCEEEEEechhhhccCC-CceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32235678899999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCC
Q 006974          240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK  319 (623)
Q Consensus       240 ~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~  319 (623)
                      .|..+.+.|..+++.+++||+++|+|.||.+++||+|.|++++      .+.++++|||+|...                
T Consensus       257 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rHPll~~~----------------  314 (782)
T PRK00409        257 KVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDEG------KIDLRQARHPLLDGE----------------  314 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCCC------cEEEcCcCCceeccC----------------
Confidence            9999999999999999999999999999999999999998643      699999999998421                


Q ss_pred             CCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHH
Q 006974          320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL  399 (623)
Q Consensus       320 ~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~  399 (623)
                                         .+||+|+.+..+.++++|||||||||||+||++|++++|+|+|+|||+...+.+++|++++
T Consensus       315 -------------------~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~  375 (782)
T PRK00409        315 -------------------KVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIF  375 (782)
T ss_pred             -------------------ceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEE
Confidence                               2689999998766899999999999999999999999999999999998657899999999


Q ss_pred             HHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       400 ~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      +++|+.|++.+.+|+||+||+++..++..+++|+|+||||||+||||.++.+++.++++++.+.++++|+|||+.++..+
T Consensus       376 ~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~  455 (782)
T PRK00409        376 ADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL  455 (782)
T ss_pred             EecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence            99999999999999999999988888887799999999999999999999999999999999889999999999999888


Q ss_pred             ccccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHH
Q 006974          480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR  559 (623)
Q Consensus       480 ~~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  559 (623)
                      +.....+.+++|.|+.+++.|+|++..|+++.|||+++|+++|+|++|+++|++++..     +..+.++++.+|+++++
T Consensus       456 ~~~~~~v~~~~~~~d~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~l~~~~~  530 (782)
T PRK00409        456 MYNREGVENASVEFDEETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE-----DKEKLNELIASLEELER  530 (782)
T ss_pred             HhcCCCeEEEEEEEecCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHH
Confidence            8778888999999999999999999999999999999999999999999999998863     34467788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhchhh-------HHHHHHHHHhHHHHHhHhhhHHhhccc
Q 006974          560 KLESQARTAASLHAEIMDLYREDSTSASISV-------YRYQFAVTSTLSKVDFDAIPNIDQCKD  617 (623)
Q Consensus       560 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (623)
                      ++++..+++++.++++++++++++.......       -+...+..+-+.+++.+++.++.+.|+
T Consensus       531 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~  595 (782)
T PRK00409        531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ  595 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777777766666666666654432211       122333555666666666666666654

>TIGR01069 mutS2 MutS2 family protein

Probab=100.00  E-value=4.7e-82  Score=728.50  Aligned_cols=557  Identities=34%  Similarity=0.468  Sum_probs=492.8

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSE-ICAVRRTLRAVNNVW   79 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~e-L~~i~~~L~~~~~l~   79 (623)
                      +|++.+++  +.|.++.++++++|++|.++.++..  ++||.+++||++++.++..|.++++.| |+.|+.+|..+.+++
T Consensus        26 ~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~--~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~  101 (771)
T TIGR01069        26 LGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN--NVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLK  101 (771)
T ss_pred             HHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc--cCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHH
Confidence            58999999  9999999999999999999988775  899999999999999999999999988 999999999999999


Q ss_pred             HHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974           80 KKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQ  159 (623)
Q Consensus        80 ~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~  159 (623)
                      .++...        ..+|.|..++..+.++++|.+.|.+|||++| .|+|+|||+|+.||+++++++..+++.+.+....
T Consensus       102 ~~l~~~--------~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g-~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~  172 (771)
T TIGR01069       102 VLSEHV--------LDLEILFHLRLNLITLPPLENDIIACIDDDG-KVKDGASEELDAIRESLKALEEEVVKRLHKIIRS  172 (771)
T ss_pred             HHHhcc--------ccchHHHHHHhcCCCcHHHHHHHHHHhCCCC-EECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998642        1378899999999999999999999999885 8999999999999999999888888888776543


Q ss_pred             HHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006974          160 IFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTA  239 (623)
Q Consensus       160 ~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L~~  239 (623)
                      .....++++.++|+|++||||||++++++.+| |++|+.|+||+|+|+||.+++++||++.++..++.+++.+|+++|+.
T Consensus       173 ~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~-g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~  251 (771)
T TIGR01069       173 KELAKYLSDTIVTIRNGRYVLPLKSGFKGKIK-GIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSE  251 (771)
T ss_pred             hchhhhhcCceEEEECCEEEEEeeHHHhhcCC-CeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22235677899999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCC
Q 006974          240 EIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK  319 (623)
Q Consensus       240 ~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~  319 (623)
                      .|.++.+.|..+++.+++||+++|+|.||..+++++|.+++.+      .+.++++|||++...                
T Consensus       252 ~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~------~i~l~~~rhPll~~~----------------  309 (771)
T TIGR01069       252 KVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFTG------KIILENARHPLLKEP----------------  309 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCCC------CEEEccccCceecCC----------------
Confidence            9999999999999999999999999999999999999987643      699999999998321                


Q ss_pred             CCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHH
Q 006974          320 SDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL  399 (623)
Q Consensus       320 ~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~  399 (623)
                                         .+||+|+.+..+.++++||||||||||||||++|++.+|+++|+++|+.....+++|++++
T Consensus       310 -------------------~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~  370 (771)
T TIGR01069       310 -------------------KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIF  370 (771)
T ss_pred             -------------------ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhee
Confidence                               2679999998776899999999999999999999999999999999998767899999999


Q ss_pred             HHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       400 ~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      .++|+.+++...+|+||+||++++.++..+++|+||||||||+||||.++.+++.++++++.+.++++|+|||+.++..+
T Consensus       371 ~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~  450 (771)
T TIGR01069       371 ADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL  450 (771)
T ss_pred             eecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence            99999999999999999999998888888899999999999999999999999999999999889999999999999988


Q ss_pred             ccccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHH
Q 006974          480 KDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERR  559 (623)
Q Consensus       480 ~~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  559 (623)
                      +.....+.|++|.|+.+++.|+|++.+|+++.|||+.+|+++|+|++|+++|++++..     ...+.++++.+|+.++.
T Consensus       451 ~~~~~~v~~~~~~~d~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~-----~~~~~~~li~~L~~~~~  525 (771)
T TIGR01069       451 MYNNEGVENASVLFDEETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGE-----FKEEINVLIEKLSALEK  525 (771)
T ss_pred             hcCCCCeEEeEEEEcCCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999999999999999864     33457777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhchhh-------HHHHHHHHHhHHHHHhHhhhHHhhccc
Q 006974          560 KLESQARTAASLHAEIMDLYREDSTSASISV-------YRYQFAVTSTLSKVDFDAIPNIDQCKD  617 (623)
Q Consensus       560 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (623)
                      ++++..+++++.++++++.+++++.......       .+...+..+.+.+++.+++.++.+.|+
T Consensus       526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~  590 (771)
T TIGR01069       526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE  590 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777666666666666555544432211       122334556666667777776666664

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=100.00  E-value=2e-73  Score=661.96  Aligned_cols=486  Identities=22%  Similarity=0.321  Sum_probs=436.0

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      ||+|+||+|.++|+.+.++|++||+.++++.+  .+ .....+|++++|+++++.|+..|.. ++.||..++.+|..+.+
T Consensus       284 ~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~~-~~~dl~~l~~~l~~~~~  362 (840)
T TIGR01070       284 MGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGNA-RPRDLARLRTSLEQLPE  362 (840)
T ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999987  33 3667799999999999999998874 99999999999999999


Q ss_pred             HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhcc-------CCCcccCCcCHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLD  150 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~-------~~~~I~d~as~~L~~iR~~~~~~~~~l~  150 (623)
                      ++..+....         .+.+..+...++.+.++.+.|.++|++       +++.|+|++|++|+.+|+..++..+.+.
T Consensus       363 l~~~l~~~~---------~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~  433 (840)
T TIGR01070       363 LRALLEELE---------GPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLA  433 (840)
T ss_pred             HHHHHHhcC---------cHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999886421         356777788888899999999999974       3457999999999999998877666655


Q ss_pred             HHHHHHHHHHHHhcCCCCcccccc-cCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 006974          151 SLLKKVAAQIFQAGGIDKPLITKR-RSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE  229 (623)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~i~~~-~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~e  229 (623)
                      .+.++    +....+++...+.+. +.||+|+|+.++...+|+.|++.+|.+|.++|++|+ ++++++++.++..++.++
T Consensus       434 ~l~~~----~~~~~~i~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~  508 (840)
T TIGR01070       434 RLEAR----ERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILAL  508 (840)
T ss_pred             HHHHH----HHHHcCCCceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHH
Confidence            54433    333346666555554 459999999999899997799999999999999997 899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 006974          230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS  309 (623)
Q Consensus       230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~  309 (623)
                      |.+|+.+|+..|..+.+.|..+.+.++.|||++|+|.+|.+++||||.|+++.      .+.|++||||+++... .   
T Consensus       509 e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~RHP~le~~~-~---  578 (840)
T TIGR01070       509 EKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDP------QLRIREGRHPVVEQVL-R---  578 (840)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCC------cEEEEeeECHHHHhcc-C---
Confidence            99999999999999999999999999999999999999999999999998753      6999999999994211 0   


Q ss_pred             cccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974          310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH  389 (623)
Q Consensus       310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~  389 (623)
                                                  +.+||||+.+..+.++++|||||||||||+||++|++++|||+|+|||+.. 
T Consensus       579 ----------------------------~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~-  629 (840)
T TIGR01070       579 ----------------------------TPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAES-  629 (840)
T ss_pred             ----------------------------CCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchh-
Confidence                                        137899999987667999999999999999999999999999999999996 


Q ss_pred             CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEE
Q 006974          390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAV  468 (623)
Q Consensus       390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vi  468 (623)
                      +.++++|+||+++|..|++..+.|||+.+|.+++.|+..+++++||||||+|+|||+.+|.+|++++++++.+ .++.+|
T Consensus       630 a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~  709 (840)
T TIGR01070       630 AELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTL  709 (840)
T ss_pred             eEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEE
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999998 788999


Q ss_pred             EEcCchhHHhhccccceeeCceEEE--ecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcc
Q 006974          469 VTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP  540 (623)
Q Consensus       469 i~TH~~~l~~~~~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~  540 (623)
                      ++|||+++..++.....+.|.+|.+  +.+.+.|+|++.+|.++.|||+++|+++|+|++|+++|++.+..++.
T Consensus       710 ~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~  783 (840)
T TIGR01070       710 FATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEA  783 (840)
T ss_pred             EEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            9999999999998888899999987  56789999999999999999999999999999999999999887653

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=100.00  E-value=6.1e-71  Score=644.57  Aligned_cols=487  Identities=23%  Similarity=0.348  Sum_probs=435.0

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH---HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~---~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      ||+|+||+|.+.|+.|.++|++|++.++++.+   +.......|++++|++|++.|+..|.. ++.||..++.++..+..
T Consensus       298 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~~-~~~dl~~l~~~l~~~~~  376 (854)
T PRK05399        298 MGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGRA-NPRDLAALRDSLEALPE  376 (854)
T ss_pred             HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999986   223566799999999999999998875 89999999999999999


Q ss_pred             HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD  150 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~  150 (623)
                      ++..+....         .+.|..+...++.+.++.+.|.++|+++       ++.|+|++|++|+.+|+.+++..+.++
T Consensus       377 l~~~l~~~~---------~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~  447 (854)
T PRK05399        377 LKELLAELD---------SPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLA  447 (854)
T ss_pred             HHHHHHhcC---------cHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHH
Confidence            998886421         3556677777888999999999999863       457999999999999999887777777


Q ss_pred             HHHHHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 006974          151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE  229 (623)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~e  229 (623)
                      ++.++..    ...+++...+.+.+ .+|+|+|+.+....+|++|++.++.+|.++|++|+ +.++++++.++..++.++
T Consensus       448 ~~~~~~~----~~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~  522 (854)
T PRK05399        448 ELEARER----ERTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALAL  522 (854)
T ss_pred             HHHHHHH----HHcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHH
Confidence            6665532    33455544444433 37999999998888997799999999999999997 899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 006974          230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS  309 (623)
Q Consensus       230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~  309 (623)
                      |.+|+++|.+.+..+.+.|..+.+.+++|||++|+|.+|.+++||||.|++++      .+.|++||||+++.. +..  
T Consensus       523 e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~l~i~~~rHP~le~~-~~~--  593 (854)
T PRK05399        523 EYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDP------GIDIEEGRHPVVEQV-LGG--  593 (854)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCC------CEEEEeccCcEEecc-cCC--
Confidence            99999999999999999999999999999999999999999999999998753      699999999999432 100  


Q ss_pred             cccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974          310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH  389 (623)
Q Consensus       310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~  389 (623)
                                                  +.+||+|+.+..+.++++|||||||||||+||++|++++|||+|+|||+.. 
T Consensus       594 ----------------------------~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~-  644 (854)
T PRK05399        594 ----------------------------EPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAES-  644 (854)
T ss_pred             ----------------------------CceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccc-
Confidence                                        137899999986658999999999999999999999999999999999996 


Q ss_pred             CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEE
Q 006974          390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAV  468 (623)
Q Consensus       390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vi  468 (623)
                      +.++++|+||+++|..|++..+.|||+.+|.+++.++..+++++||||||||+||++.+|.++++++++++.+. ++++|
T Consensus       645 a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l  724 (854)
T PRK05399        645 ARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTL  724 (854)
T ss_pred             eEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999987 58999


Q ss_pred             EEcCchhHHhhccccceeeCceEEEec--CccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcc
Q 006974          469 VTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRP  540 (623)
Q Consensus       469 i~TH~~~l~~~~~~~~~i~~g~~~~~~--~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~  540 (623)
                      ++||++++..++++...+.|.+|.++.  +.+.|+|++.+|.++.|||+++|+++|+|++|+++|++.+..++.
T Consensus       725 ~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~  798 (854)
T PRK05399        725 FATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLES  798 (854)
T ss_pred             EEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence            999999999999988899999998875  689999999999999999999999999999999999999887653

>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=100.00  E-value=2.1e-67  Score=596.83  Aligned_cols=516  Identities=36%  Similarity=0.496  Sum_probs=460.8

Q ss_pred             chHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006974            2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK   80 (623)
Q Consensus         2 G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~l~~   80 (623)
                      |++.+++  +-|.++.+.++..+++|.++..++. .+.+|+.++.|+...+.++..|+.|.+++|+.|..+|..+..+++
T Consensus        25 g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~~~~~~l~~i~~~l~~~e~g~~l~~~el~~i~~~l~~~~~lkr  102 (753)
T COG1193          25 GLEELKN--LKPRTDLELIEEELSETAEALDILEDEGLPPLGGLNDVSEALGRLEKGGRLHVEELLEISDFLRGFRALKR  102 (753)
T ss_pred             HHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCCCCchhhhhhHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            7888999  9999999999999999999999887 688999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974           81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVAAQI  160 (623)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~  160 (623)
                      +++....        ..  ..++..+..++++...|..+||+++ .|.|.||++|..||...+...+++.+.+.......
T Consensus       103 ~~~~~e~--------~~--~~~~~~~~~~~~l~~~i~~~id~~g-~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~  171 (753)
T COG1193         103 AIKKLER--------IK--RTLALALIELSDLELEINIPIDDDG-LIKDRASFELDAIRRQLRDLEEEIRDKLESLIRSK  171 (753)
T ss_pred             HHHHhhh--------HH--HHHHHhhhcchHHHHHHhhhhcccc-cccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence            9986422        11  4567778889999999999999985 79999999999999998877777777776654432


Q ss_pred             HHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 006974          161 FQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLLTAE  240 (623)
Q Consensus       161 ~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L~~~  240 (623)
                      . +..+++.+++.|++|||+||++++++.++ |++|+.|++|+|+|++|..++.+||++.++..+|+.++.+|++.|+..
T Consensus       172 ~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~-giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~  249 (753)
T COG1193         172 E-AKYLQDRIVTTRDGREVLPVKAEFKGAIK-GIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSAL  249 (753)
T ss_pred             h-hHhhhhceEeccCCeEEeHHHHHhhhhcC-ceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHH
Confidence            2 45677999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCC
Q 006974          241 IAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKS  320 (623)
Q Consensus       241 i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~  320 (623)
                      +.++.+.+..+...++++|++.|+++|+.++.++.|.|++++      .|.+.++|||++..                  
T Consensus       250 v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~~------~l~l~~~~HPll~~------------------  305 (753)
T COG1193         250 VAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSNDG------VLELLDARHPLLKE------------------  305 (753)
T ss_pred             HhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCCc------eEEeccccCccCcc------------------
Confidence            999999999999999999999999999999999999998643      79999999999942                  


Q ss_pred             CCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHH
Q 006974          321 DVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA  400 (623)
Q Consensus       321 ~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~  400 (623)
                                         .|++++.+......++|||||++||||.||++|+..+|+|+|.++|+.....+++|++++.
T Consensus       306 -------------------~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~a  366 (753)
T COG1193         306 -------------------DVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFA  366 (753)
T ss_pred             -------------------ccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhh
Confidence                               3567777777768999999999999999999999999999999999998789999999999


Q ss_pred             HcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhc
Q 006974          401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK  480 (623)
Q Consensus       401 ~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~  480 (623)
                      ++|+.|++.+.+||||++|..++.++.-++  +|+++||.++||||.+|++++.++++++.++++.++++||+.+++.++
T Consensus       367 DIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~~  444 (753)
T COG1193         367 DIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALA  444 (753)
T ss_pred             ccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHHH
Confidence            999999999999999999999999985444  999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHHH
Q 006974          481 DKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRK  560 (623)
Q Consensus       481 ~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  560 (623)
                      .....+.|++|.|+.+++.|+|++.+|+++.|+|+.+|.++|+|..+++.|+.....     +....+.++..+.....+
T Consensus       445 ~~~~~v~nas~~fd~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~-----~~~~~~~~i~~l~~~~~~  519 (753)
T COG1193         445 AEREGVENASMEFDAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGE-----EKELLEELIEKLEEVRKE  519 (753)
T ss_pred             hcchhhhchhhhhhHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCc-----hHhHHHHHhhhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988752     233455556666666655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 006974          561 LESQARTAASLHAEIMDLYRED  582 (623)
Q Consensus       561 ~e~~~~~~~~~~~~~~~~~~~~  582 (623)
                      +++..+.++..+.+.+.+...+
T Consensus       520 ~~~~~~~~e~~~~e~~~l~~~~  541 (753)
T COG1193         520 LEEELEEVEKLLDEVELLTGAN  541 (753)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhh
Confidence            5555555555555444444444

>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=100.00  E-value=4.1e-67  Score=603.35  Aligned_cols=492  Identities=24%  Similarity=0.349  Sum_probs=431.6

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~---~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      ||+|++++|..+|+.+.++|+.||+.++++....   +.....|+.++|++|+++|+..|+. ++.||..+++++..+..
T Consensus       296 mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~-~~rDl~~l~~~l~~~~~  374 (843)
T COG0249         296 MGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRA-SPRDLLRLRDSLEKIPE  374 (843)
T ss_pred             hhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCC-ChhhHHHHHHHHHHHHH
Confidence            8999999999999999999999999999998843   3566789999999999999999997 89999999999999999


Q ss_pred             HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCC------cccCCcCHHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLL------IILDRASEDLELIRAERKRNMENLDS  151 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~------~I~d~as~~L~~iR~~~~~~~~~l~~  151 (623)
                      ++..+.....     ...+..+...+..++.+.++...+..+|.+++.      .|+++++++|+.+|...+...+.+.+
T Consensus       375 i~~~l~~~~~-----~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~  449 (843)
T COG0249         375 IFKLLSSLKS-----ESDLLLLLEDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAK  449 (843)
T ss_pred             HHHHHhcccc-----chhhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9998875421     111223333233455566899999999986543      68999999999999988755555544


Q ss_pred             HHHHHHHHHHHhcCCCCcccccccC-ceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHH
Q 006974          152 LLKKVAAQIFQAGGIDKPLITKRRS-RMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE  230 (623)
Q Consensus       152 ~l~~~~~~~~~~~~~~~~~i~~~~~-r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee  230 (623)
                      +.    .......|++...+.+++- +|+|.|+......+|++|++.++.++..+|.+|+ +.+++.++..++......|
T Consensus       450 le----~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE  524 (843)
T COG0249         450 LE----LEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPE-LKELEEKLLDAEEKILALE  524 (843)
T ss_pred             HH----HHHHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHH
Confidence            43    3344567888877777765 8999999999999998899999999999999985 7778888888888888899


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhccc
Q 006974          231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSA  310 (623)
Q Consensus       231 ~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~  310 (623)
                      .+++.++.+.+..+.+.|+.+...+|+|||++|+|.+|...+||||+|++..      .+.|++||||+++.. ...   
T Consensus       525 ~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~------~l~i~~gRHPvvE~~-~~~---  594 (843)
T COG0249         525 YELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSN------DLEIKEGRHPVVEAV-LDN---  594 (843)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCC------CEEEEecCcchhhhh-ccC---
Confidence            9999999999999999999999999999999999999999999999999864      399999999999532 111   


Q ss_pred             ccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC
Q 006974          311 ASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP  390 (623)
Q Consensus       311 ~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~  390 (623)
                                                  .+||||+.+++..++++|||||||||||+||++|++++|||+|+||||+. +
T Consensus       595 ----------------------------~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~-A  645 (843)
T COG0249         595 ----------------------------GFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEK-A  645 (843)
T ss_pred             ----------------------------CcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHH-c
Confidence                                        17899999998559999999999999999999999999999999999996 8


Q ss_pred             CccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEE
Q 006974          391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVV  469 (623)
Q Consensus       391 ~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii  469 (623)
                      .++++|+||+++|..|++.++-|||+.+|.+++.|+..+++.+||||||.|+||++.+|.+|++|+++|+.+. ++.+||
T Consensus       646 ~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLF  725 (843)
T COG0249         646 RIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLF  725 (843)
T ss_pred             cccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996 899999


Q ss_pred             EcCchhHHhhccccceeeCceEEEe--cCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcchH
Q 006974          470 TTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPER  542 (623)
Q Consensus       470 ~TH~~~l~~~~~~~~~i~~g~~~~~--~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~~  542 (623)
                      +|||+++..+......+.|.+|...  .+.+.+.|++.+|.++.|||+++|+++|+|.+|+++|++.+.+++...
T Consensus       726 ATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~~  800 (843)
T COG0249         726 ATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKES  800 (843)
T ss_pred             eccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc
Confidence            9999999999998888888887543  456889999999999999999999999999999999999998776544

>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]

Probab=100.00  E-value=2.7e-53  Score=456.50  Aligned_cols=498  Identities=21%  Similarity=0.291  Sum_probs=367.1

Q ss_pred             chHhHhccCCCCCCCHHHHHHHHHHHHHHHHH------HhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006974            2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALAM------MQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAV   75 (623)
Q Consensus         2 G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~------~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~   75 (623)
                      |+|+||+|.+.|+-|..+|..||+.++|+-..      ++...--+..+||+.|.+.|+--|.|-+.+|++.+...+..+
T Consensus       495 G~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a  574 (1070)
T KOG0218|consen  495 GLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSA  574 (1070)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998321      112234567899999999999999984448988877766654


Q ss_pred             HHHHH----HHHHhhhccCCcccccchHHHHHhcC------CChhHHHHHHhhhhccCCC---cccC--------CcCHH
Q 006974           76 NNVWK----KLTEAAELDGDSLQRYSPLLELLKNC------NFLTELEEKIGFCIDCKLL---IILD--------RASED  134 (623)
Q Consensus        76 ~~l~~----~l~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~L~~~I~~~Id~~~~---~I~d--------~as~~  134 (623)
                      ..-..    ++.........+...-+-|+.++..+      ...+++...++..-...+.   .++|        ....-
T Consensus       575 ~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di  654 (1070)
T KOG0218|consen  575 VSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDI  654 (1070)
T ss_pred             HHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhH
Confidence            43322    22211100011112234455566655      1233333333211111110   1222        11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhh
Q 006974          135 LELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVE  214 (623)
Q Consensus       135 L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~  214 (623)
                      ...||+.+. .+..++..|.+. ++++....  -.+.+..+..|||+|+.+....+|..|+--.|.....+|.+|. ++.
T Consensus       655 ~~virE~~m-s~~~~~~hLaei-Rk~Lk~pn--lef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~-iq~  729 (1070)
T KOG0218|consen  655 IKVIRESEM-SRSQLKEHLAEI-RKYLKRPN--LEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPR-IQK  729 (1070)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHH-HHHhcCCC--ceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHH-HHH
Confidence            122222111 111122233332 22332222  2233344558999999888888998999888877778888885 555


Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcc
Q 006974          215 FNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEG  294 (623)
Q Consensus       215 l~~~~~~l~~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~  294 (623)
                      +-.++....+.-..+-...++..-+.+.+|..+++++...+|.+||++|+|+.+...|||||+|+++-     ..|.|++
T Consensus       730 ~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~-----~eI~ikn  804 (1070)
T KOG0218|consen  730 LLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ-----QEIIIKN  804 (1070)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch-----hhhhhhc
Confidence            55555444443333445677888888999999999999999999999999999999999999999852     3699999


Q ss_pred             cccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccC-CceEEEEEcCCCCCHHHHHHHHhh
Q 006974          295 IKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVEC-ETRVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       295 ~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~-g~~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      ||||+++ ..+.                               +.+||+++.+.+ |.++.+||||||||||.++|+++|
T Consensus       805 gRhPvIe-~Ll~-------------------------------d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvAL  852 (1070)
T KOG0218|consen  805 GRHPVIE-SLLV-------------------------------DYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVAL  852 (1070)
T ss_pred             CCCchHH-HHhh-------------------------------hccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHH
Confidence            9999994 2221                               136888877754 458999999999999999999999


Q ss_pred             hhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974          374 ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA  453 (623)
Q Consensus       374 ~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~  453 (623)
                      +.+|||+|+|||++. +.+++||.+|++||..|++..+-|||+.+|.....++..++..++|||||.|+||...+|.+|+
T Consensus       853 itIMAQiGsfVPAee-a~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIs  931 (1070)
T KOG0218|consen  853 ITIMAQIGSFVPAEE-ARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAIS  931 (1070)
T ss_pred             HHHHHHhcCccchHH-hhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHH
Confidence            999999999999996 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC-CcEEEEEcCchhHHhhccccce-eeCceEEEe---------cCccccccccccCCCCCcHHHHHHHHCC
Q 006974          454 TSILQYLRDR-VGLAVVTTHYADLSCLKDKDTR-FENAATEFS---------LETLRPTYRILWGSTGDSNALNIAKSIG  522 (623)
Q Consensus       454 ~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~-i~~g~~~~~---------~~~l~~~y~l~~g~~~~s~a~~ia~~~g  522 (623)
                      .|.++|+.+. .+.++|||||+.+..+...... +.|.+|.|-         .+.+.++|++..|.+..||++++|++++
T Consensus       932 YAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ 1011 (1070)
T KOG0218|consen  932 YATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLAR 1011 (1070)
T ss_pred             HHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhC
Confidence            9999999875 5688999999998887765543 566676552         3457789999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhcchH
Q 006974          523 FDRKIIQRAQKLVERLRPER  542 (623)
Q Consensus       523 ~~~~i~~~a~~~~~~~~~~~  542 (623)
                      +|.+++.||....++++++.
T Consensus      1012 ip~sii~rA~siSeeleke~ 1031 (1070)
T KOG0218|consen 1012 IPKSIINRAFSISEELEKES 1031 (1070)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999877654443

>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]

Probab=100.00  E-value=1.1e-48  Score=428.79  Aligned_cols=490  Identities=20%  Similarity=0.282  Sum_probs=393.1

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHh----cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQ----SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN   76 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~----~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~   76 (623)
                      ||.++++.|.-+|..+...++.+++.+.+.++..+    -..--+..+||+.++..++-.   -+..|...+.+....+.
T Consensus       326 ~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~~---~~L~d~~r~yq~~~~l~  402 (902)
T KOG0219|consen  326 QGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLARRLMK---ANLQDVNRIYQAAKLLP  402 (902)
T ss_pred             cchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhhhhhh---cchHHHHHHHHHHHHhH
Confidence            69999999999999999999999999988766443    123456789999999999872   25578888887777777


Q ss_pred             HHHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhcc-----CCCcccCCcCHHHHHHHHHHHHHHHHHHH
Q 006974           77 NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIILDRASEDLELIRAERKRNMENLDS  151 (623)
Q Consensus        77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~-----~~~~I~d~as~~L~~iR~~~~~~~~~l~~  151 (623)
                      .+...|.+..+-... + ...++..   ....+..+...+..++|.     +-..|+.+++++|.+||+++.+++.++.+
T Consensus       403 ~~~~~l~~~~~~~~~-l-l~~~l~~---~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~  477 (902)
T KOG0219|consen  403 TVVQVLISLSESHNR-L-LKSPLTE---HLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEK  477 (902)
T ss_pred             HHHHHHHhhhhhhhh-h-hhhhhhh---hhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHH
Confidence            666555443210000 0 1113322   233455666677777763     33469999999999999999999999998


Q ss_pred             HHHHHHHHHHHhcCCCCccccccc---CceEEEEccccccCC--CCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHH
Q 006974          152 LLKKVAAQIFQAGGIDKPLITKRR---SRMCVGIKASHKYLL--PDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSE  226 (623)
Q Consensus       152 ~l~~~~~~~~~~~~~~~~~i~~~~---~r~~i~v~~~~~~~~--~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~  226 (623)
                      ..+++....-+.+   +..+...+   .+||+.+.......+  ..++..-++..| .+|++....-.|||+....+.+.
T Consensus       478 ~hkrv~~dl~~D~---~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~-GV~FTtk~L~slN~e~~~~qk~Y  553 (902)
T KOG0219|consen  478 LHKKVSADLGLDP---KKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKG-GVKFTTKKLSSLNDEFMSLQKEY  553 (902)
T ss_pred             HHHHHHhhcCCCc---ccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeC-cEEEEhhhHhhhHHHHHHHHHHH
Confidence            8888755432211   22233333   378988876432211  235554444445 57888888999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcccceecCCCCCCCcceEEEcccccCccccch
Q 006974          227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSS  304 (623)
Q Consensus       227 ~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~--~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~  304 (623)
                      +..+..|.+++..--..|.+.|..+...+|+||++.|+|..|.  -..|+||.+.+.+    ...+.++++|||+++...
T Consensus       554 ~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g----s~rl~l~~~rHp~lE~Qd  629 (902)
T KOG0219|consen  554 DEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG----SKRLELKQSRHPVLEGQD  629 (902)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc----hhHHHHHhcccchhhccc
Confidence            8888899999999999999999999999999999999999886  4579999998754    236899999999995431


Q ss_pred             hhhcccccCCCCCCCCCCCCCcEEEceeeeecCCcccccccccc--CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhce
Q 006974          305 LRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE--CETRVVVITGPNTGGKTASMKTLGLASLMSKAGL  382 (623)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~--~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~  382 (623)
                        .                              -.++|+|..++  ++ ++++||||||+||||++|+.|.+++|||+|+
T Consensus       630 --~------------------------------~~fIpNdv~le~~~~-~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGc  676 (902)
T KOG0219|consen  630 --E------------------------------IPFIPNDVVLEKGKC-RMLIITGPNMGGKSTYIRQVGVIVLMAQIGC  676 (902)
T ss_pred             --c------------------------------CCCCCCccccccCCc-eEEEEeCCCcCccchhhhhhhHHHHHHHhCC
Confidence              1                              02677777777  55 8999999999999999999999999999999


Q ss_pred             eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974          383 YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD  462 (623)
Q Consensus       383 ~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~  462 (623)
                      |||++. +.++++|.|++++|.+|+..+++||||.+|-..+.|+..+++.+|+++|||++||...+|-.+++|+-+++..
T Consensus       677 fVPce~-A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~  755 (902)
T KOG0219|consen  677 FVPCES-ATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIAT  755 (902)
T ss_pred             ceehhh-cCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHH
Confidence            999996 8999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             C-CcEEEEEcCchhHHhhccccceeeCceEEEe--cCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhc
Q 006974          463 R-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR  539 (623)
Q Consensus       463 ~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~--~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~  539 (623)
                      + ++..||+||++++..++.....+.|-+|...  .+.+.-.|++..|+++.|+++.+|+.+|+|+.+++.|+...++++
T Consensus       756 ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele  835 (902)
T KOG0219|consen  756 KIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELE  835 (902)
T ss_pred             HHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHH
Confidence            5 6788999999999999988888888777554  456777899999999999999999999999999999999877654


Q ss_pred             c
Q 006974          540 P  540 (623)
Q Consensus       540 ~  540 (623)
                      .
T Consensus       836 ~  836 (902)
T KOG0219|consen  836 D  836 (902)
T ss_pred             H
Confidence            3

>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]

Probab=100.00  E-value=5.1e-46  Score=395.46  Aligned_cols=487  Identities=22%  Similarity=0.257  Sum_probs=385.3

Q ss_pred             chHhHhccCCCCCCCHHHHHHHHHHHHHHHH-----HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974            2 GHAVVQKAQIPFGKSLEESQKLLNQTSAALA-----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN   76 (623)
Q Consensus         2 G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~-----~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~   76 (623)
                      |++.||.|+..|.+|+.++..|++-+.-++.     ..+..+-.++.++|+-.+++++..|.. ...++-.+++++.++-
T Consensus       281 g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t-~l~~W~~~~stv~~~~  359 (849)
T KOG0221|consen  281 GEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHT-KLSDWQVLYSTVYSAL  359 (849)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCc-eechHHHHHHHHHHHH
Confidence            8899999999999999999999997765532     111345678899999999999999887 6789999999999998


Q ss_pred             HHHHHHHHhhhccCCcccccchHHHHHh-cCCChhHHHHHHhhhhccCC------CcccCCcCHHHHHHHHHHHHHHHHH
Q 006974           77 NVWKKLTEAAELDGDSLQRYSPLLELLK-NCNFLTELEEKIGFCIDCKL------LIILDRASEDLELIRAERKRNMENL  149 (623)
Q Consensus        77 ~l~~~l~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~L~~~I~~~Id~~~------~~I~d~as~~L~~iR~~~~~~~~~l  149 (623)
                      .+++..++..-    + ..++.  ...+ -++.+.++...+..+||-++      ..|.++.+|+|+++|+.+.    .+
T Consensus       360 ~i~~~~rslp~----s-~~~~~--~~~~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~----~l  428 (849)
T KOG0221|consen  360 GIRDACRSLPQ----S-IQLFR--DIAQEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYM----GL  428 (849)
T ss_pred             HHHHHHHhCcc----c-hhhhh--HHHHHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHc----cc
Confidence            88888775321    0 01111  1111 13356678888888898543      3588999999999998765    56


Q ss_pred             HHHHHHHHHHHHHh---cCCCCcccccccCceEEEEccccccCCC----CcEEEEEecCCcEEEeccchhhhhhHHHHHH
Q 006974          150 DSLLKKVAAQIFQA---GGIDKPLITKRRSRMCVGIKASHKYLLP----DGIALNVSSSGATYFMEPKGAVEFNNMEVRL  222 (623)
Q Consensus       150 ~~~l~~~~~~~~~~---~~~~~~~i~~~~~r~~i~v~~~~~~~~~----~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l  222 (623)
                      ..+|.+++++....   ...+-..|.+---+|++.|+.-+.-...    .||-.-.+ +...+|+......+|.+.+.++
T Consensus       429 p~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~-s~E~l~~rnart~eLD~~~GDI  507 (849)
T KOG0221|consen  429 PSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFL-SEEKLHYRNARTKELDALLGDI  507 (849)
T ss_pred             hHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhc-ccceeEeecccHHhHHHHhhhH
Confidence            66777766654331   1222334444445777776654322111    13333232 3446677777788999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCcccc
Q 006974          223 SNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLG  302 (623)
Q Consensus       223 ~~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~  302 (623)
                      .-+...-|..|+..|..+|......|........+||+++|+|..|.+++|.||.++++.     -.+.|.+||||+.+.
T Consensus       508 y~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~-----~il~I~ngrh~l~e~  582 (849)
T KOG0221|consen  508 YCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEV-----LILRIQNGRHPLMEL  582 (849)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHH-----HHHHHHcCChhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999863     247999999999843


Q ss_pred             chhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCcccccccccc-CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhc
Q 006974          303 SSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLGLASLMSKAG  381 (623)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~-~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G  381 (623)
                      . .+                                .+||++..+. .+.++.+|||||.||||.+||++|++++|+|+|
T Consensus       583 ~-~d--------------------------------tfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIG  629 (849)
T KOG0221|consen  583 C-AD--------------------------------TFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIG  629 (849)
T ss_pred             H-HH--------------------------------hcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhc
Confidence            2 11                                2678888886 334999999999999999999999999999999


Q ss_pred             eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974          382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR  461 (623)
Q Consensus       382 ~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~  461 (623)
                      +|||++. +.++.+|+|+++++..+++....|||+-...|++.++..|+..+|+|+||.|.||+..+|-.|..+++.++.
T Consensus       630 sFVPAe~-A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~  708 (849)
T KOG0221|consen  630 SFVPAEE-AEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWL  708 (849)
T ss_pred             cccchhh-hhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHH
Confidence            9999996 899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCc---EEEEEcCchhHHhh--ccccceeeCceEE---EecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHH
Q 006974          462 DRVG---LAVVTTHYADLSCL--KDKDTRFENAATE---FSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQK  533 (623)
Q Consensus       462 ~~~~---~vii~TH~~~l~~~--~~~~~~i~~g~~~---~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~  533 (623)
                      ..|.   +|++.||++++...  ....+.+.-..|.   .+.+.+.+.|++.+|....|+|+.+|+..|+|++++.||++
T Consensus       709 ~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~  788 (849)
T KOG0221|consen  709 ARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKE  788 (849)
T ss_pred             hcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHH
Confidence            7764   59999999997642  1221111111111   24567899999999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 006974          534 LVERLRP  540 (623)
Q Consensus       534 ~~~~~~~  540 (623)
                      .......
T Consensus       789 v~~ai~s  795 (849)
T KOG0221|consen  789 VSDAIRS  795 (849)
T ss_pred             HHHHHHc
Confidence            8765433

>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]

Probab=100.00  E-value=1.1e-45  Score=412.58  Aligned_cols=498  Identities=18%  Similarity=0.212  Sum_probs=379.4

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HHh-cCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MMQ-SQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~~-~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      +|+|+++.|...|+-+.+.|++|++.+.-+..  ... +..-.|..+||++|+|.|+-.++.-...++.+..++|..++.
T Consensus       574 fGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~k~i~~f~rvLegfk~  653 (1125)
T KOG0217|consen  574 FGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNKKKIADFIRVLEGFKE  653 (1125)
T ss_pred             HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Confidence            69999999999999999999999998887666  111 445678899999999999988776457788888888888777


Q ss_pred             HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhcc-----CCCcccC--CcCHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-----KLLIILD--RASEDLELIRAERKRNMENLD  150 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~-----~~~~I~d--~as~~L~~iR~~~~~~~~~l~  150 (623)
                      +...+........ .......+..++..++.+..-.+.-..+.|.     + +.|-+  +++.+++..-+.++++...+.
T Consensus       654 ~~~~~~~~~~v~~-~~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~e-g~i~P~~Gfd~eyD~a~k~~~e~e~~L~  731 (1125)
T KOG0217|consen  654 INKLLGSLINVLK-EGEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKE-GVIVPLEGFDEEYDEAMKRVDEAENELL  731 (1125)
T ss_pred             HHHHHHHHHHHHH-hhHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhc-CccCCCccccHHHHHHhhHHHHHHHHHH
Confidence            7666543221000 0001112223333333333333333344443     2 23443  578889988888887777777


Q ss_pred             HHHHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHH
Q 006974          151 SLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEE  230 (623)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee  230 (623)
                      .+|..+..++-  .. .-.+.+.-.+.|.+.|+.+....++..|+..++..|...|+.|..- .+-..+.+.+.......
T Consensus       732 ~~L~~~rk~l~--c~-si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~-kli~~l~~aee~~~~~~  807 (1125)
T KOG0217|consen  732 AYLEEYRKRLG--CS-SIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLR-KLIAHLDEAEERKKSSL  807 (1125)
T ss_pred             HHHHHHHHhcC--CC-ceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHH-HHHHHHHHHHHHHHHHH
Confidence            77776544321  11 0112333335799999998877776568888899999999999621 22222222222233334


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--cccceecCCCCCCCcceEEEcccccCccccchhhhc
Q 006974          231 TAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD--GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSL  308 (623)
Q Consensus       231 ~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~--~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~  308 (623)
                      ..+.+.+.....++....+.++..++.|||+++.|.+|..++  +|||++++..+  .+..+.+++.|||++.....   
T Consensus       808 ~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d--t~~~l~~~~~~Hpcfsl~s~---  882 (1125)
T KOG0217|consen  808 SDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD--TPGFLIVKGLRHPCFSLPST---  882 (1125)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC--CCceeEEecccCceeecCcC---
Confidence            467778888888888999999999999999999999998876  69999987532  22369999999999943211   


Q ss_pred             ccccCCCCCCCCCCCCCcEEEceeeeecCCcccccccccc-CCc-eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecC
Q 006974          309 SAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVE-CET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPA  386 (623)
Q Consensus       309 ~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~-~g~-~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~  386 (623)
                                                  ++.++|+++.+. .+. .+.++|||||+|||||||++++.++|||+|++||+
T Consensus       883 ----------------------------~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa  934 (1125)
T KOG0217|consen  883 ----------------------------GTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPA  934 (1125)
T ss_pred             ----------------------------CCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccH
Confidence                                        123678888887 222 44559999999999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCc
Q 006974          387 KNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVG  465 (623)
Q Consensus       387 ~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~  465 (623)
                      .. ..++.+|+|++++|..|.+-.+.|||..+....+.|+..+++.+||++||.++||...+|.+|+.+++++|.. ..+
T Consensus       935 ~~-~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c 1013 (1125)
T KOG0217|consen  935 EV-MELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQC 1013 (1125)
T ss_pred             HH-hcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccc
Confidence            86 7899999999999999999999999999999999999999999999999999999999999999999999997 467


Q ss_pred             EEEEEcCchhHHhhccccceeeCceEEE--ecCc-cccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhh
Q 006974          466 LAVVTTHYADLSCLKDKDTRFENAATEF--SLET-LRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL  538 (623)
Q Consensus       466 ~vii~TH~~~l~~~~~~~~~i~~g~~~~--~~~~-l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~  538 (623)
                      ..+++|||+.+.....+.+.+..++|..  +.+. +.+.|++..|+++.||++++|+++|+|..|+++|.....++
T Consensus      1014 ~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~ 1089 (1125)
T KOG0217|consen 1014 LGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHEL 1089 (1125)
T ss_pred             cCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            8899999999887767777777777754  4444 88999999999999999999999999999999998876543

>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]

Probab=100.00  E-value=4.8e-44  Score=386.81  Aligned_cols=481  Identities=19%  Similarity=0.283  Sum_probs=375.2

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhc----CCCCCH----HHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVS----GQLLSP----SEICAVR   69 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~---~~~~~~l~~i~Di~~~l~r~~~----g~~l~~----~eL~~i~   69 (623)
                      ||.+.+|+-+++|+++..-+..+++.+++...--   .++.+.++..+|....+..+..    ..+-.+    --+..++
T Consensus       294 ~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk  373 (867)
T KOG0220|consen  294 GGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLK  373 (867)
T ss_pred             cchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHH
Confidence            6999999999999999999999999988886632   3788999999999888877531    111111    1245566


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCcccccchHHHHHhcCC--ChhHHHHHHhhhhccCC--------------CcccCCcCH
Q 006974           70 RTLRAVNNVWKKLTEAAELDGDSLQRYSPLLELLKNCN--FLTELEEKIGFCIDCKL--------------LIILDRASE  133 (623)
Q Consensus        70 ~~L~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~L~~~I~~~Id~~~--------------~~I~d~as~  133 (623)
                      .+|..+.-++..+....         .+.+.++.+.+.  -+..+.+.|..+|+++.              ..|+.+..-
T Consensus       374 ~tL~lv~~~~~al~~~~---------s~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~  444 (867)
T KOG0220|consen  374 HTLELVDPLKIALKNCN---------SNLLREYYGSFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNING  444 (867)
T ss_pred             HHHHHHHHHHHHHhhch---------hHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccH
Confidence            67777777776665321         234444544433  35667889999998642              146777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc-CceEEEEccc----cccCCCCcEEEEEecCCcEEEec
Q 006974          134 DLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKAS----HKYLLPDGIALNVSSSGATYFME  208 (623)
Q Consensus       134 ~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~----~~~~~~~g~~~~~s~sg~~~~~e  208 (623)
                      -|+--|+-..++.........++..+.    .+ .....+.+ -||.+.++..    .....| ..+...+....++-+.
T Consensus       445 ~LDiaR~ty~ei~~~~~~~i~~l~E~~----~~-nl~~~f~sarGF~~ri~~~~~~~~~~~lP-~~fi~~~~~~~~~~~~  518 (867)
T KOG0220|consen  445 FLDIARRTYTEIVDDIAGMISQLGEKF----SL-NLRLSFSSARGFFIRITTDCIALPSDTLP-SEFIKISKVKNSYSFT  518 (867)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc----Cc-cccccccccccEEEEeeccccccccccCc-hhhhhhhhhcceeeec
Confidence            888888776665544444444443332    11 12222222 2677766654    234455 3344444445555566


Q ss_pred             cchhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcc
Q 006974          209 PKGAVEFNNMEVRLSNSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDS  288 (623)
Q Consensus       209 p~~~~~l~~~~~~l~~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~  288 (623)
                      ...++.+|.++.+...++.-.-..++.+|.+.+..+.+.+..+.+.+.-||+++++|......++++|+|++        
T Consensus       519 s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~--------  590 (867)
T KOG0220|consen  519 SADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTD--------  590 (867)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC--------
Confidence            667788888877666666555567899999999999999999999999999999999998888999999987        


Q ss_pred             eEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHH
Q 006974          289 SINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASM  368 (623)
Q Consensus       289 ~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlL  368 (623)
                      .+.|.+||||+|++-..                                ++++.++..+..+.++.+|||||||||||+|
T Consensus       591 slaI~qGRHPILe~i~~--------------------------------ek~i~N~t~~t~~s~f~IITGPNMsGKSTYL  638 (867)
T KOG0220|consen  591 SLAIKQGRHPILEKISA--------------------------------EKPIANNTYVTEGSNFLIITGPNMSGKSTYL  638 (867)
T ss_pred             ceeeccCCCchhhhhcc--------------------------------cCcccCcceeecccceEEEECCCCCcchHHH
Confidence            39999999999965321                                1366777777777789999999999999999


Q ss_pred             HHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          369 KTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       369 k~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                      |+++++++|||+|+|+|+.. +.+|+|++||+++|-.|.+.++-|+|..+|+..+.++..+++.+||+|||.++||..++
T Consensus       639 KQvAl~~IMAQIGc~IPA~Y-aS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TStee  717 (867)
T KOG0220|consen  639 KQVALCQIMAQIGSYVPAEY-ASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEE  717 (867)
T ss_pred             HHHHHHHHHHHhccCcchhh-ccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcccc
Confidence            99999999999999999985 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEec--Ccccc-ccccccCC-CCCcHHHHHHHHCCCC
Q 006974          449 GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRP-TYRILWGS-TGDSNALNIAKSIGFD  524 (623)
Q Consensus       449 ~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~--~~l~~-~y~l~~g~-~~~s~a~~ia~~~g~~  524 (623)
                      |.++.+|+.+++.+-..+++++||+.++.+++...+.+.|.++..+.  +.... .|+|..|. .+.-|++++++..-+|
T Consensus       718 GiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iP  797 (867)
T KOG0220|consen  718 GIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLP  797 (867)
T ss_pred             chhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCC
Confidence            99999999999999889999999999999999999999998876543  22332 58888876 4556889999999999


Q ss_pred             HHHHHHHHHHHHh
Q 006974          525 RKIIQRAQKLVER  537 (623)
Q Consensus       525 ~~i~~~a~~~~~~  537 (623)
                      .+|++.|+.+..+
T Consensus       798 d~i~e~a~~~~t~  810 (867)
T KOG0220|consen  798 DSIVEDAKEITTQ  810 (867)
T ss_pred             HHHHHhhhHHHHH
Confidence            9999999987654

>PF00488 MutS_V: MutS domain V C-terminus

Probab=100.00  E-value=1.7e-42  Score=349.73  Aligned_cols=228  Identities=36%  Similarity=0.637  Sum_probs=186.0

Q ss_pred             cccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCc-
Q 006974          273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECET-  351 (623)
Q Consensus       273 ~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~-  351 (623)
                      ||+|+|+++.      .+.++++|||+++.. +++                              +.+||+|+.+..+. 
T Consensus         1 y~~P~~~~~~------~l~i~~~~HPll~~~-~~~------------------------------~~~v~ndi~~~~~~~   43 (235)
T PF00488_consen    1 YCRPKISEEK------SLKIKEGRHPLLEEK-LEN------------------------------KKFVPNDIELSNNKS   43 (235)
T ss_dssp             EB-EEEESTT------EEEEEEE--TTHHHH-TTT------------------------------SSC--EEEEESSSSS
T ss_pred             CcccEEcCCC------CEEEEeccCCEEecc-ccC------------------------------CceecceeecCCCce
Confidence            7999999864      799999999999542 111                              13679999998874 


Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR  431 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~  431 (623)
                      ++++|||||+|||||+||++|++++|||+|+|||++. +.+++||+|+++++..|++..+.|+|..++++++.++..+++
T Consensus        44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~-~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~  122 (235)
T PF00488_consen   44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES-AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE  122 (235)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE-EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred             eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc-cccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence            6999999999999999999999999999999999996 899999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe--cCccccccccccCC
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGS  508 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~--~~~l~~~y~l~~g~  508 (623)
                      .+|||+||+++||+|.+|.+++.+++++|.+ .++.+|++||++++..+......+.+.+|.+.  .+.+.++|++..|.
T Consensus       123 ~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~  202 (235)
T PF00488_consen  123 KSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGI  202 (235)
T ss_dssp             TEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES-
T ss_pred             ceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECC
Confidence            9999999999999999999999999999998 48999999999998887766666666777654  46788999999999


Q ss_pred             CCCcHHHHHHHHCCCCHHHHHHHHHHHHhh
Q 006974          509 TGDSNALNIAKSIGFDRKIIQRAQKLVERL  538 (623)
Q Consensus       509 ~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~  538 (623)
                      ++.|+|+++|+.+|+|++++++|++..+.+
T Consensus       203 ~~~S~ai~iA~~~g~p~~II~rA~~i~~~l  232 (235)
T PF00488_consen  203 CSSSYAIEIAKLAGLPEEIIERAKEILKQL  232 (235)
T ss_dssp             -SSTCHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999987754

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=100.00  E-value=6.7e-39  Score=321.30  Aligned_cols=196  Identities=29%  Similarity=0.506  Sum_probs=177.9

Q ss_pred             ccccccc--ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccH
Q 006974          340 PVPIDIK--VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG  417 (623)
Q Consensus       340 ~v~i~l~--l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~  417 (623)
                      +|+++++  ...+ ++++|+|||||||||+||++|++.+|+|+|+|+|+.. +.++.++++++++|..++..++.|+||.
T Consensus        18 ~v~~~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~-~~~~~~~~il~~~~l~d~~~~~lS~~~~   95 (222)
T cd03285          18 FIPNDVTLTRGKS-RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDS-ADIPIVDCILARVGASDSQLKGVSTFMA   95 (222)
T ss_pred             eEEeeEEEeecCC-eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCccc-EEEeccceeEeeeccccchhcCcChHHH
Confidence            5544444  4456 8999999999999999999999999999999999986 7899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEec-
Q 006974          418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFSL-  495 (623)
Q Consensus       418 g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~-  495 (623)
                      ++++++.++..+++|+|+|||||++||++.++.++.+++++++.+ .++++|++||+.++..+|++...+.+|++.++. 
T Consensus        96 e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285          96 EMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence            999988888778999999999999999999999999988888875 478999999998899999999999999987654 


Q ss_pred             ---CccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHh
Q 006974          496 ---ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVER  537 (623)
Q Consensus       496 ---~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~  537 (623)
                         +.+.|+|++.+|.++.|+|+.+|+++|+|++++++|+++.+.
T Consensus       176 ~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~  220 (222)
T cd03285         176 DASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALE  220 (222)
T ss_pred             CCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence               678899999999999999999999999999999999998764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=100.00  E-value=4e-39  Score=321.10  Aligned_cols=190  Identities=31%  Similarity=0.518  Sum_probs=173.6

Q ss_pred             cccccccc--cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccH
Q 006974          340 PVPIDIKV--ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG  417 (623)
Q Consensus       340 ~v~i~l~l--~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~  417 (623)
                      +|++|+.+  .++ ++++|+||||+||||+++++|++++|+|+|+|||++. +.++++++++++++..|++..+.|+|+.
T Consensus        18 ~v~ndi~l~~~~~-~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~~~~~~StF~~   95 (218)
T cd03286          18 FVPNDVDLGATSP-RILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDDIMKGESTFMV   95 (218)
T ss_pred             eEEeeeEEeecCC-cEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccccccCcchHHH
Confidence            56555555  456 8999999999999999999999999999999999996 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEec-
Q 006974          418 HISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL-  495 (623)
Q Consensus       418 g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~-  495 (623)
                      ++++++.++..+++|+|+|||||++||||.++.++++++++++.+. ++++|++||++++.........+.+.+|.++. 
T Consensus        96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~~~~v~~~~m~~~~~  175 (218)
T cd03286          96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHEHGGVRLGHMACAVK  175 (218)
T ss_pred             HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhcCcceEEEEEEEEEe
Confidence            9999999999999999999999999999999999999999999986 89999999999977655555677888887643 


Q ss_pred             -------CccccccccccCCCCCcHHHHHHHHCCCCHHHHHHH
Q 006974          496 -------ETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA  531 (623)
Q Consensus       496 -------~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a  531 (623)
                             +.+.|+|++.+|+++.|||+++|+++|+|++++++|
T Consensus       176 ~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA  218 (218)
T cd03286         176 NESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA  218 (218)
T ss_pred             ccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence                   578999999999999999999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=100.00  E-value=2.2e-38  Score=312.94  Aligned_cols=184  Identities=54%  Similarity=0.839  Sum_probs=172.4

Q ss_pred             cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974          340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI  419 (623)
Q Consensus       340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~  419 (623)
                      ++++||++.+|.++++|+||||||||||||++|++.+++|+|+++|+.....+++++++++.++..+++...+|+||+||
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~   96 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHM   96 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHH
Confidence            67999999998558999999999999999999999999999999999876788999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEecCccc
Q 006974          420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLR  499 (623)
Q Consensus       420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~~~l~  499 (623)
                      +++..+...+.+|+++|+|||++|||+..+..+...+++.+.+.+.++|++||+.++..++++...+.+|++.++.+.+.
T Consensus        97 ~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~~~~  176 (200)
T cd03280          97 KNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDPETLK  176 (200)
T ss_pred             HHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEecCccc
Confidence            98888877789999999999999999999999987788888877899999999988889999999999999999999999


Q ss_pred             cccccccCCCCCcHHHHHHHHCCC
Q 006974          500 PTYRILWGSTGDSNALNIAKSIGF  523 (623)
Q Consensus       500 ~~y~l~~g~~~~s~a~~ia~~~g~  523 (623)
                      ++|++..|.++.|||+++|+++|+
T Consensus       177 ~~ykl~~G~~~~s~a~~~a~~~g~  200 (200)
T cd03280         177 PTYRLLIGVPGRSNALEIARRLGL  200 (200)
T ss_pred             EEEEEeECCCCCcHHHHHHHHcCC
Confidence            999999999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=100.00  E-value=2.1e-38  Score=316.75  Aligned_cols=188  Identities=31%  Similarity=0.547  Sum_probs=171.1

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR  421 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~r  421 (623)
                      ++++.+..| ++++|+||||+||||+||++|++.+++++|+|+|+.. +.+++|++|+++++..|++..+.|+|+.++++
T Consensus        23 ~i~~~~~~g-~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~  100 (222)
T cd03287          23 DIHLSAEGG-YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDSIQHGMSTFMVELSE  100 (222)
T ss_pred             eEEEEecCC-cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccccccccchHHHHHHH
Confidence            555666677 8999999999999999999999999999999999986 89999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhcccc-ceeeCceEEEe-----
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKD-TRFENAATEFS-----  494 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~-~~i~~g~~~~~-----  494 (623)
                      ++.++..+++++|+|||||++|||+.++.+++.++++++.+. ++++|++||++++..+.... ..+.+.+|.++     
T Consensus       101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~~~~~~  180 (222)
T cd03287         101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYLESQKD  180 (222)
T ss_pred             HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEEEeccc
Confidence            999999999999999999999999999999999999999987 88999999999988776542 34667777654     


Q ss_pred             -----cCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHH
Q 006974          495 -----LETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRA  531 (623)
Q Consensus       495 -----~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a  531 (623)
                           .+.+.|+|++.+|.++.|||+.+|+++|+|++++++|
T Consensus       181 ~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA  222 (222)
T cd03287         181 FETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA  222 (222)
T ss_pred             cccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence                 2468899999999999999999999999999999886

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=100.00  E-value=8.3e-37  Score=305.02  Aligned_cols=194  Identities=29%  Similarity=0.507  Sum_probs=179.8

Q ss_pred             cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974          340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI  419 (623)
Q Consensus       340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~  419 (623)
                      +|++++.+..+.++++|+|||||||||+||++|++.++++.|+++|+.. ..++++++++..++..|++..+.|+|..++
T Consensus        19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~-~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~   97 (216)
T cd03284          19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASK-AEIGVVDRIFTRIGASDDLAGGRSTFMVEM   97 (216)
T ss_pred             eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecccc-ceecceeeEeccCCchhhhccCcchHHHHH
Confidence            5677777775558999999999999999999999999999999999986 789999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEe--cC
Q 006974          420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS--LE  496 (623)
Q Consensus       420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~--~~  496 (623)
                      .+++.++..+++|+++|||||++||++.++.++..++++++.+. ++++|++||+.++..+++....+.+++|.++  .+
T Consensus        98 ~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~  177 (216)
T cd03284          98 VETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGG  177 (216)
T ss_pred             HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCC
Confidence            99999999999999999999999999999999988899999887 8899999999999999998888999998874  56


Q ss_pred             ccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q 006974          497 TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKL  534 (623)
Q Consensus       497 ~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~  534 (623)
                      .+.++|++..|.++.|||+.+|++.|+|++++++|+++
T Consensus       178 ~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~  215 (216)
T cd03284         178 GVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI  215 (216)
T ss_pred             eEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence            79999999999999999999999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=100.00  E-value=4e-36  Score=299.47  Aligned_cols=183  Identities=29%  Similarity=0.459  Sum_probs=165.3

Q ss_pred             cccccccccCCc-eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH
Q 006974          340 PVPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH  418 (623)
Q Consensus       340 ~v~i~l~l~~g~-~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g  418 (623)
                      +||+|+.++.+. ++++|+||||+|||||||++|++.+|+++|+++|+.. +.++++++++.+++..+++....|+|+.+
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~-~~~~~~d~i~~~l~~~~si~~~~S~f~~e   95 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADS-ATIGLVDKIFTRMSSRESVSSGQSAFMID   95 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCC-cEEeeeeeeeeeeCCccChhhccchHHHH
Confidence            789999998774 7999999999999999999999999999999999986 88999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC---CcEEEEEcCchhHHhhcc--ccceeeCceEEE
Q 006974          419 ISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR---VGLAVVTTHYADLSCLKD--KDTRFENAATEF  493 (623)
Q Consensus       419 ~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~---~~~vii~TH~~~l~~~~~--~~~~i~~g~~~~  493 (623)
                      +++++.++.++.+++|+|||||++|||+.++.+++.++++++.+.   +.++|++||+.++.....  ....+.+.+|.+
T Consensus        96 l~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~~~  175 (213)
T cd03281          96 LYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTMEV  175 (213)
T ss_pred             HHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEEEE
Confidence            999999999999999999999999999999999998899998765   248999999999776543  445677788876


Q ss_pred             --e------cCccccccccccCCCCCcHHHHHHHHCCC
Q 006974          494 --S------LETLRPTYRILWGSTGDSNALNIAKSIGF  523 (623)
Q Consensus       494 --~------~~~l~~~y~l~~g~~~~s~a~~ia~~~g~  523 (623)
                        +      .+.+.|+|++.+|+++.|||+++|+++|+
T Consensus       176 ~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~  213 (213)
T cd03281         176 LLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI  213 (213)
T ss_pred             EEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence              3      26799999999999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=100.00  E-value=5.4e-36  Score=296.26  Aligned_cols=179  Identities=27%  Similarity=0.523  Sum_probs=162.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISR  421 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~r  421 (623)
                      +++++...| ++++|+||||+||||+||+++.+++|+++|+|+|+.. +.+++++++++.++..+++.++.|+||+|+++
T Consensus        21 ~~~~~~~~~-~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~   98 (204)
T cd03282          21 DIYLTRGSS-RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDSMERNLSTFASEMSE   98 (204)
T ss_pred             eeEEeeCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccccchhhhHHHHHHHH
Confidence            566666777 8999999999999999999999999999999999986 78999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEec---Ccc
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSL---ETL  498 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~---~~l  498 (623)
                      +..+..++++|+|+|||||++||||.++.++..++++++.+.+.++|++||+.++...+.....+.+.+|....   +.+
T Consensus        99 ~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~  178 (204)
T cd03282          99 TAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKSCVVHLHMKAQSINSNGI  178 (204)
T ss_pred             HHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCCCeEEEEEEEEEcCCCce
Confidence            99999999999999999999999999999999999999998899999999999988776655556666666542   678


Q ss_pred             ccccccccCCCC-CcHHHHHHHHCC
Q 006974          499 RPTYRILWGSTG-DSNALNIAKSIG  522 (623)
Q Consensus       499 ~~~y~l~~g~~~-~s~a~~ia~~~g  522 (623)
                      .++|++..|.+. .+||+++|+.+.
T Consensus       179 ~~~ykl~~G~~~~~~~g~~~a~~~~  203 (204)
T cd03282         179 EMAYKLVLGLYRIVDDGIRFVRVLA  203 (204)
T ss_pred             eeEEEEeeCCCCCCccHHHHHHHhh
Confidence            899999999999 999999999764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=100.00  E-value=1.6e-35  Score=288.95  Aligned_cols=181  Identities=38%  Similarity=0.656  Sum_probs=168.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCC
Q 006974          353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE  432 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~  432 (623)
                      +++|||||||||||+||++|++.+++++|+|+|+.. +.+++++++++.++..+++.++.|+||+|+++++.++..+++|
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~-~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~   79 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES-AELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN   79 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh-eEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence            478999999999999999999999999999999986 8999999999999999999999999999999999999989999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEec--CccccccccccCCC
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFSL--ETLRPTYRILWGST  509 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~--~~l~~~y~l~~g~~  509 (623)
                      +++|+|||++||||.++..+..++++++.++ ++++|++||+.++..+++....+.+++|.+..  +.+.++|++..|.+
T Consensus        80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~  159 (185)
T smart00534       80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVA  159 (185)
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCC
Confidence            9999999999999999999998899998874 88999999999999999887788888887664  45889999999999


Q ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHH
Q 006974          510 GDSNALNIAKSIGFDRKIIQRAQKL  534 (623)
Q Consensus       510 ~~s~a~~ia~~~g~~~~i~~~a~~~  534 (623)
                      +.+||+.+|++.|+|++++++|++.
T Consensus       160 ~~s~a~~~a~~~g~~~~i~~~a~~~  184 (185)
T smart00534      160 GKSYGIEVAKLAGLPKEVIERAKEI  184 (185)
T ss_pred             CCcHHHHHHHHhCCCHHHHHHHHHh
Confidence            9999999999999999999999874

>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family

Probab=100.00  E-value=2.8e-34  Score=301.17  Aligned_cols=284  Identities=19%  Similarity=0.194  Sum_probs=234.0

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      ||+++|++|.+.|.++.++|+++++.++++..  .+ .....+|++++|+++++.++..|. +++.||..++.++..+.+
T Consensus        15 ~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~~~~el~~l~~~l~~~~~   93 (308)
T smart00533       15 MGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERGR-ASPRDLLRLYDSLEGLKE   93 (308)
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999988  33 355668999999999999998886 599999999999999999


Q ss_pred             HHHHHHHhhhccCCcccccchHHH-H----HhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLE-L----LKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSL  152 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~-l----~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~  152 (623)
                      +++++.....      ..+.++.. +    ...+..+.++...+..+++++.+.|+|+||++|+.+|+.++++...+++.
T Consensus        94 l~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~  167 (308)
T smart00533       94 IRQLLESLDG------PLLGLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDELREKLEELEEELEEL  167 (308)
T ss_pred             HHHHHHhcCc------HHHHHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999865311      00112211 1    11122333444445555555556899999999999999999998888888


Q ss_pred             HHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHH
Q 006974          153 LKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA  232 (623)
Q Consensus       153 l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~  232 (623)
                      +++...+. ....++..+++.+  +|||+|+.+++..+| |.++..|++|.++|++|..++++|+++.++..++..++.+
T Consensus       168 ~~~~~~~~-~~~~l~~~~~~~~--g~~i~v~~~~~~~~~-~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  243 (308)
T smart00533      168 LKKEREEL-GIDSLKLGYNKVH--GYYIEVTKSEAKKVP-KDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKE  243 (308)
T ss_pred             HHHHHHHh-CCCceEEeEeccE--EEEEEecchhhccCC-hHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87765432 1123333344433  399999999999998 7788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccc
Q 006974          233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLL  301 (623)
Q Consensus       233 il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~  301 (623)
                      |+++|+..+.++.+.+..+++.+++|||++|+|.+|.+++||+|.|++++      .+.+++||||+++
T Consensus       244 i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~~~------~l~i~~~rHPlle  306 (308)
T smart00533      244 ILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVDSG------ELEIKNGRHPVLE  306 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCCCC------CEEEeeCCCCccc
Confidence            99999999999999999999999999999999999999999999998753      6999999999984

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=100.00  E-value=9.6e-35  Score=287.40  Aligned_cols=182  Identities=35%  Similarity=0.584  Sum_probs=169.3

Q ss_pred             cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974          340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI  419 (623)
Q Consensus       340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~  419 (623)
                      ++++|+++..| ++++|+||||||||||||+++...++++.|+++|+.. ..++++++++..++..+.+....|+|+.++
T Consensus        19 ~~~~~~~l~~~-~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~-~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~   96 (202)
T cd03243          19 FVPNDINLGSG-RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAES-ASIPLVDRIFTRIGAEDSISDGRSTFMAEL   96 (202)
T ss_pred             eEeeeEEEcCC-eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccc-cccCCcCEEEEEecCcccccCCceeHHHHH
Confidence            67999999999 9999999999999999999988888999999999986 789999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEecC--c
Q 006974          420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLE--T  497 (623)
Q Consensus       420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~~~--~  497 (623)
                      +++..++..+.+|+++|+|||++||||.++..+.+.+++.+.+.+.++|++||+.++...+++...+.++++..+.+  .
T Consensus        97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~  176 (202)
T cd03243          97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGG  176 (202)
T ss_pred             HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCe
Confidence            99999999999999999999999999999999988788888888899999999999888888888888898887654  6


Q ss_pred             cccccccccCCCCCcHHHHHHHHCCC
Q 006974          498 LRPTYRILWGSTGDSNALNIAKSIGF  523 (623)
Q Consensus       498 l~~~y~l~~g~~~~s~a~~ia~~~g~  523 (623)
                      +.++|++..|.+..|+|+++|+++|+
T Consensus       177 ~~~~ykl~~g~~~~~~a~~~~~~~g~  202 (202)
T cd03243         177 LTFTYKLIDGICDPSYALQIAELAGL  202 (202)
T ss_pred             eeEEEEEeECCCCCcHHHHHHHHcCC
Confidence            89999999999999999999999985

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.98  E-value=2.6e-32  Score=269.26  Aligned_cols=181  Identities=29%  Similarity=0.439  Sum_probs=157.8

Q ss_pred             cccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974          340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI  419 (623)
Q Consensus       340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~  419 (623)
                      +|++|+++..| ++++|+||||||||||||+|+...++++.|.++|+.. ..++ ++.++..+...+++..+.|.|..++
T Consensus        15 ~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~-~~~q-~~~l~~~~~~~d~l~~~~s~~~~e~   91 (199)
T cd03283          15 RVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASS-FELP-PVKIFTSIRVSDDLRDGISYFYAEL   91 (199)
T ss_pred             eecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCc-cCcc-cceEEEeccchhccccccChHHHHH
Confidence            67889999999 9999999999999999999988888999999999975 5666 6778888888888888888888788


Q ss_pred             HHHHHHHHhcC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE--EEec
Q 006974          420 SRIVDILELVS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT--EFSL  495 (623)
Q Consensus       420 ~rl~~~~~l~~--~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~--~~~~  495 (623)
                      +++..++..+.  +|+++|+|||++|||+.++..+..++++.+.+.+.++|++||++++....+....+.+.++  .++.
T Consensus        92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~~~~~~~~  171 (199)
T cd03283          92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYHFREDIDD  171 (199)
T ss_pred             HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEEEEEEEEC
Confidence            88999988888  9999999999999999999998877888888778899999999997766655555555544  3456


Q ss_pred             CccccccccccCCCCCcHHHHHHHHCCC
Q 006974          496 ETLRPTYRILWGSTGDSNALNIAKSIGF  523 (623)
Q Consensus       496 ~~l~~~y~l~~g~~~~s~a~~ia~~~g~  523 (623)
                      +.+.++|++.+|+++.|+|+++|++.|+
T Consensus       172 ~~~~~~y~~~~G~~~~s~~~~~a~~~g~  199 (199)
T cd03283         172 NKLIFDYKLKPGVSPTRNALRLMKKIGI  199 (199)
T ss_pred             CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence            7789999999999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.2e-30  Score=260.04  Aligned_cols=165  Identities=24%  Similarity=0.324  Sum_probs=139.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h---------hhceeecC
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S---------KAGLYLPA  386 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a---------~~G~~vp~  386 (623)
                      .++++|+++.|++..+  ++||++++| ++++|+||||||||||+|++ |++.+.       .         ....||||
T Consensus         4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ   82 (254)
T COG1121           4 MIEVENLTVSYGNRPVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ   82 (254)
T ss_pred             EEEEeeeEEEECCEeeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence            5889999999996445  999999999 99999999999999999999 887642       1         13469999


Q ss_pred             CCC--CCcc---------------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          387 KNH--PRLP---------------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       387 ~~~--~~l~---------------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ...  ..+|                           .++.++.++|..+..++.+++|||||+ |+.+|++++++|+|+|
T Consensus        83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll  162 (254)
T COG1121          83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL  162 (254)
T ss_pred             ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence            641  1222                           145678999999999999999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ||||++|+|+.....+.. ++..++++|+||+++|||+. +..++|++..+ |.++.+
T Consensus       163 LDEP~~gvD~~~~~~i~~-lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~  218 (254)
T COG1121         163 LDEPFTGVDVAGQKEIYD-LLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIA  218 (254)
T ss_pred             ecCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEe
Confidence            999999999999999999 78888888999999999987 77889987665 445544

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.97  E-value=4.6e-30  Score=258.89  Aligned_cols=167  Identities=21%  Similarity=0.293  Sum_probs=144.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~  383 (623)
                      .++++||+++|+++++  ++||++++| ++++|+||||||||||||++ |++.+                   +|+.-.|
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~   80 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY   80 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence            4789999999998877  999999999 99999999999999999999 77653                   4566789


Q ss_pred             ecCCCCCCc----------------c-----------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          384 LPAKNHPRL----------------P-----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       384 vp~~~~~~l----------------~-----------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      +||......                +           .+++.+..+|..+..++.+.+||||++ |+.+|++++++|+++
T Consensus        81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL  160 (258)
T COG1120          81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL  160 (258)
T ss_pred             eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence            999852111                1           134558889999999999999999999 688888999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||++||+.....+.+ ++..+. ++|.|+|+++||++++ .+||+.+.+.+|++...
T Consensus       161 LLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~  220 (258)
T COG1120         161 LLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ  220 (258)
T ss_pred             EeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee
Confidence            9999999999999999999 566666 6689999999999955 79999999999998765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=9.9e-30  Score=249.16  Aligned_cols=167  Identities=21%  Similarity=0.306  Sum_probs=142.3

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----------------------hh
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS  378 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----------------------~a  378 (623)
                      -.+++++|+++||++.|  ++||++.+| ++++|+||+|+|||||||+| |++.+                       ..
T Consensus         7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~   85 (263)
T COG1127           7 PLIEVRGVTKSFGDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK   85 (263)
T ss_pred             ceEEEeeeeeecCCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence            36899999999999988  999999999 99999999999999999999 77753                       12


Q ss_pred             hhceeecCCC--CCCccHHHHH----------------------HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC
Q 006974          379 KAGLYLPAKN--HPRLPWFDLI----------------------LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       379 ~~G~~vp~~~--~~~l~~~d~i----------------------~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      ++| +++|.+  +..+++++|+                      ++.+|+... .+..+|.|||||+ |+++|++++.+|
T Consensus        86 r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP  164 (263)
T COG1127          86 RMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP  164 (263)
T ss_pred             hee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence            344 566665  2344555543                      456788777 8999999999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||+||||.....+.. ++..|++ -+.|++++|||.+ +..+||++..+.+|++.+.
T Consensus       165 ell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~  227 (263)
T COG1127         165 ELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE  227 (263)
T ss_pred             CEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence            9999999999999999999988 5555665 4889999999987 7889999999999999886

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.7e-29  Score=243.96  Aligned_cols=166  Identities=23%  Similarity=0.313  Sum_probs=141.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------hhhhc
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------~a~~G  381 (623)
                      +++++||+|+||+..|  ++|+++.+| ++++|+||+||||||||||+ +|-.+                     ..+.|
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG   80 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG   80 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence            4789999999999887  999999999 99999999999999999999 44322                     11233


Q ss_pred             eeecCCCC--CCccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                       +|+|+.+  +.++..+                      .++.++|+.+..+..++.||||++ |+++|++++.+|.++|
T Consensus        81 -mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL  159 (240)
T COG1126          81 -MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML  159 (240)
T ss_pred             -eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence             6777641  2333333                      357899999999999999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~  494 (623)
                      +|||||.|||+....+.. ++..|++.|.|.|++||.+.++ .++|+++.+..|.+...
T Consensus       160 FDEPTSALDPElv~EVL~-vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~  217 (240)
T COG1126         160 FDEPTSALDPELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE  217 (240)
T ss_pred             ecCCcccCCHHHHHHHHH-HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence            999999999999999999 7888999999999999999966 68999999999976544

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=282.26  Aligned_cols=275  Identities=18%  Similarity=0.172  Sum_probs=190.4

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC---
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH---  389 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~---  389 (623)
                      +.+++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |++.+..        ....|+|+...   
T Consensus       310 ~~~l~~~~l~~~y~~~~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l  388 (638)
T PRK10636        310 NPLLKMEKVSAGYGDRIILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFL  388 (638)
T ss_pred             CceEEEEeeEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhC
Confidence            457899999999987665  999999999 99999999999999999999 7764321        01236676421   


Q ss_pred             -CCccH---------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHH
Q 006974          390 -PRLPW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVA  451 (623)
Q Consensus       390 -~~l~~---------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~  451 (623)
                       ....+               +..++..+++. +..++++++|||||+ |++++++++.+|+++||||||+|||+.....
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~  468 (638)
T PRK10636        389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA  468 (638)
T ss_pred             CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence             11111               12356677775 468899999999999 8999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecCccccccccccCCCCCcHHHHHHHHCC--CCHHHH
Q 006974          452 LATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG--FDRKII  528 (623)
Q Consensus       452 l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g--~~~~i~  528 (623)
                      +..++.++    ++|||+||||.+ +..+|++++.+.+|.+....+.... |.-...      ....+....  .+..  
T Consensus       469 l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~-~~~~~~------~~~~~~~~~~~~~~~--  535 (638)
T PRK10636        469 LTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED-YQQWLS------DVQKQENQTDEAPKE--  535 (638)
T ss_pred             HHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHH-HHHHHh------hhhhhhhhhcccccc--
Confidence            99966554    469999999988 5679999999999998744332221 210000      000000000  0000  


Q ss_pred             HHHHHHHHhhcchHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhchhhH--HHHHHHHHhHHHHH
Q 006974          529 QRAQKLVERLRPERQQHRK-SELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVY--RYQFAVTSTLSKVD  605 (623)
Q Consensus       529 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  605 (623)
                      ..+.    ....+....+. .+......+.+++++..++++++++++++++++++.++..+.++  .+..++..++.+++
T Consensus       536 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  611 (638)
T PRK10636        536 NNAN----SAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAK  611 (638)
T ss_pred             cccc----ccccchhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHH
Confidence            0000    00000000011 11111134445567778889999999999999999888666554  38999999999999


Q ss_pred             hHhhhHHhhcc
Q 006974          606 FDAIPNIDQCK  616 (623)
Q Consensus       606 ~~~~~~~~~~~  616 (623)
                      ++++.+|++.-
T Consensus       612 ~~l~~~~~~w~  622 (638)
T PRK10636        612 SGLEECEMAWL  622 (638)
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=4.1e-28  Score=278.61  Aligned_cols=272  Identities=18%  Similarity=0.166  Sum_probs=188.2

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCCC---
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKNH---  389 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~~---  389 (623)
                      +.+++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |++.+..      .  ...|+|+...   
T Consensus       317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~  395 (635)
T PRK11147        317 KIVFEMENVNYQIDGKQLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD  395 (635)
T ss_pred             CceEEEeeeEEEECCeEEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence            457899999999988665  999999999 99999999999999999999 7654321      1  1236666421   


Q ss_pred             CCccHHH-------------------HHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          390 PRLPWFD-------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       390 ~~l~~~d-------------------~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                      ..+++++                   .++..++.. +..++++++|||||+ |++++++++.+|++|||||||+|||+..
T Consensus       396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~  475 (635)
T PRK11147        396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET  475 (635)
T ss_pred             CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence            1122222                   234456664 467889999999999 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee-CceEEEecCccccccccccCCCCCcHHHHHHHHCCCCHH
Q 006974          449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRK  526 (623)
Q Consensus       449 ~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~-~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~  526 (623)
                      ...|..++.++    ++|+|++|||.+ +..+|++++.+. +|.+....+.+.. |.-...    .   ........+..
T Consensus       476 ~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~-y~~~~~----~---~~~~~~~~~~~  543 (635)
T PRK11147        476 LELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD-ARQQQA----Q---YLALKQPAVKK  543 (635)
T ss_pred             HHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH-HHHHHH----H---HHhhhhhhccc
Confidence            98888854443    569999999987 567999999997 7988776554332 210000    0   00000000000


Q ss_pred             HHHHHHHHHHhhcchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhchhhHH-HHHHHHHhHHHHH
Q 006974          527 IIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYR-YQFAVTSTLSKVD  605 (623)
Q Consensus       527 i~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  605 (623)
                         .+ .  ....+.....+..... .. +..++++..++++++++++++++++++..+..+.|+. +..++..++.+++
T Consensus       544 ---~~-~--~~~~~~~~~~~~~~~~-~~-~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (635)
T PRK11147        544 ---KE-E--AAAPKAETVKRSSKKL-SY-KLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAE  615 (635)
T ss_pred             ---cc-c--ccccccchhhhhhhhh-ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHH
Confidence               00 0  0000000000000000 12 2233377888899999999999999999887777766 8999999999999


Q ss_pred             hHhhhHHhhcc
Q 006974          606 FDAIPNIDQCK  616 (623)
Q Consensus       606 ~~~~~~~~~~~  616 (623)
                      ++++.++++.-
T Consensus       616 ~~~~~~~~~w~  626 (635)
T PRK11147        616 QELEVAFERWE  626 (635)
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=2.4e-28  Score=254.84  Aligned_cols=168  Identities=24%  Similarity=0.333  Sum_probs=140.3

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-----------hhcee
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-----------KAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a-----------~~G~~  383 (623)
                      .++++||+|.|+ +..+  ++||++.+| ++++|+||||||||||||++ |++.+.       .           +.-.|
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy   82 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY   82 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence            467899999999 5665  999999999 99999999999999999999 776531       0           12347


Q ss_pred             ecCCCC--CCcc---------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNH--PRLP---------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~--~~l~---------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+...  ..++                     .++.++..+|+.+..++.+++||+||| |+.+|.+++.+|+++||||
T Consensus        83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE  162 (293)
T COG1131          83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE  162 (293)
T ss_pred             EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            887652  1111                     244677888888766788999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYAD-LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~-~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~  495 (623)
                      ||+||||..+..+.+ ++..+++.+ .|||++||.++ +..+||++..+.+|++.++.
T Consensus       163 Pt~GLDp~~~~~~~~-~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g  219 (293)
T COG1131         163 PTSGLDPESRREIWE-LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG  219 (293)
T ss_pred             CCcCCCHHHHHHHHH-HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence            999999999999999 666677766 79999999987 67789999999999998874

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.3e-28  Score=238.92  Aligned_cols=162  Identities=24%  Similarity=0.339  Sum_probs=140.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------h-------hceeecCCC
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------K-------AGLYLPAKN  388 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~-------~G~~vp~~~  388 (623)
                      .+.+++|++.|++..+  ++||++.+| ++++|+||+|||||||||+| |+..+-+       +       .-.|++|+.
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~   81 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED   81 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence            4788999999998666  999999999 99999999999999999999 7765421       1       114777775


Q ss_pred             CCCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          389 HPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       389 ~~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                       ..+||                        .+.+++.+|+.+..++.++.|||||+ |+++|++++.+|+++|||||++.
T Consensus        82 -~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA  160 (248)
T COG1116          82 -ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA  160 (248)
T ss_pred             -cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence             56665                        33567889999999999999999999 89999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCc
Q 006974          444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENA  489 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g  489 (623)
                      ||...+..+.+.+++-..+.+.|++++|||.+.+ .++|+++++.++
T Consensus       161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            9999999999988888888889999999998754 689999998884

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.6e-28  Score=232.79  Aligned_cols=166  Identities=19%  Similarity=0.273  Sum_probs=135.6

Q ss_pred             cEEEceeeeecCCcc--c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          326 EMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~--v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      ++++.+++|+|++.+  + +++|++..| ++++|.||||+||||+||+| +++.+-                   .+.|.
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV   79 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEG-EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV   79 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccc-eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence            467899999999854  2 999999999 99999999999999999999 444331                   12232


Q ss_pred             eecCC-C-CCCcc------H---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          383 YLPAK-N-HPRLP------W---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       383 ~vp~~-~-~~~l~------~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                       ++.. + +.+++      +               .+++..++++.+.+++.+..||.||| ++.+|++++.+|++++||
T Consensus        80 -l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD  158 (245)
T COG4555          80 -LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD  158 (245)
T ss_pred             -ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence             1211 0 01111      1               12345677888899999999999999 799999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||+|||......+.+ ++..+++.|.+|||+||.++ +..+||+++.+.+|.+++.
T Consensus       159 EP~sGLDi~~~r~~~d-fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~  214 (245)
T COG4555         159 EPTSGLDIRTRRKFHD-FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE  214 (245)
T ss_pred             CCCCCccHHHHHHHHH-HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence            9999999999999999 77788888999999999986 7789999999999998875

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.95  E-value=1.2e-27  Score=251.44  Aligned_cols=167  Identities=21%  Similarity=0.266  Sum_probs=138.8

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYL  384 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~v  384 (623)
                      .++++||+|.|++..+  ++||++.+| ++++|+||||||||||+|++ |++.+.                  .+...|+
T Consensus         7 ~i~i~~l~k~~~~~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v   85 (306)
T PRK13537          7 PIDFRNVEKRYGDKLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV   85 (306)
T ss_pred             eEEEEeEEEEECCeEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence            6899999999987655  999999999 99999999999999999999 776431                  1223477


Q ss_pred             cCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974          385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI  440 (623)
Q Consensus       385 p~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp  440 (623)
                      |+...  ..+++.                     +.++..+++.+..++.+++||+||+ |+.+|++++.+|+++|||||
T Consensus        86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP  165 (306)
T PRK13537         86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP  165 (306)
T ss_pred             eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            87642  112222                     2345567777778899999999999 89999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+||||..+..+.. ++..+++.|.|+|++||+++ +..+||++..+.+|++.+.
T Consensus       166 t~gLD~~~~~~l~~-~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~  219 (306)
T PRK13537        166 TTGLDPQARHLMWE-RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE  219 (306)
T ss_pred             CcCCCHHHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999 55556777899999999988 5689999999999998776

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.95  E-value=1.2e-27  Score=254.56  Aligned_cols=170  Identities=20%  Similarity=0.241  Sum_probs=140.0

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhce
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGL  382 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~  382 (623)
                      ..+++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |++.+.                  .+...
T Consensus        39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig  117 (340)
T PRK13536         39 TVAIDLAGVSKSYGDKAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG  117 (340)
T ss_pred             ceeEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence            346999999999998655  999999999 99999999999999999999 776431                  11234


Q ss_pred             eecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          383 YLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       383 ~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      |+|+....  .+++.                     +.++..+|+.+..++.+++||+||+ |+.+|++++.+|+++|||
T Consensus       118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD  197 (340)
T PRK13536        118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD  197 (340)
T ss_pred             EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            77776421  12221                     2345667777778899999999999 899999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~  495 (623)
                      |||+||||..+..+... +..+.+.|.|+|++||+++ +..+|+++..+.+|++.++.
T Consensus       198 EPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g  254 (340)
T PRK13536        198 EPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG  254 (340)
T ss_pred             CCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence            99999999999999994 5556667899999999988 56899999999999988753

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=3.4e-27  Score=233.70  Aligned_cols=164  Identities=19%  Similarity=0.260  Sum_probs=132.7

Q ss_pred             EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhh-hh-----------------------
Q 006974          327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SL-----------------------  376 (623)
Q Consensus       327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~-----------------------  376 (623)
                      ++++||+|.|+..    .+  ++||++.+| ++++|+||+||||||||+++|.+ .+                       
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            5688999999642    23  999999999 99999999999999999999543 32                       


Q ss_pred             hhhhceeecCCCC--CCccHH---------------------HHHHHHcCCchhhh-cccccccHHHH-HHHHHHHhcCC
Q 006974          377 MSKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLE-QNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       377 ~a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~-~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..+...|++|...  ..++..                     ..++..+|+.+... ++++.|||||+ |+++|++++.+
T Consensus        81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~  160 (226)
T COG1136          81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN  160 (226)
T ss_pred             HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence            1222347777642  122222                     23456678887777 88999999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT  491 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~  491 (623)
                      |+++|.||||.+||+..+..+...+.+.-.+.|.|+|+||||.+++.+||+.+.+.+|++
T Consensus       161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~  220 (226)
T COG1136         161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI  220 (226)
T ss_pred             CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence            999999999999999999999995554444558899999999999999999999999983

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.95  E-value=2.7e-27  Score=235.79  Aligned_cols=165  Identities=20%  Similarity=0.184  Sum_probs=132.8

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~  386 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |++.+.                 .+...|+|+
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence            357899999987655  999999999 99999999999999999999 776431                 012346777


Q ss_pred             CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      ....  .+++                     +..++..+|+.+..++.+++||+||+ |+.++++++.+|+++||||||+
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~  159 (213)
T cd03259          80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS  159 (213)
T ss_pred             chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            5311  1111                     12345667777778899999999999 7999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |||+.....+...+. .+.+ .+.++|++||+.+ +..+|+++..+.+|++..
T Consensus       160 ~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~  211 (213)
T cd03259         160 ALDAKLREELREELK-ELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ  211 (213)
T ss_pred             cCCHHHHHHHHHHHH-HHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            999999999999554 4554 5889999999987 578999999999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=5.8e-27  Score=229.17  Aligned_cols=168  Identities=23%  Similarity=0.312  Sum_probs=140.0

Q ss_pred             cEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----------------------hh
Q 006974          326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------MS  378 (623)
Q Consensus       326 ~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----------------------~a  378 (623)
                      +++++||++.| +++..  +++|+|++| ++++|+||+|||||||||++ |++.+                       ..
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            68999999999 66555  999999999 99999999999999999999 66532                       34


Q ss_pred             hhceeecCCCC--CCccHHH-----------------------------HHHHHcCCchhhhcccccccHHHH-HHHHHH
Q 006974          379 KAGLYLPAKNH--PRLPWFD-----------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~~d-----------------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~  426 (623)
                      ++| +++|..+  .++.++.                             ..++++|+.+...+..++||||++ |+++|+
T Consensus        82 ~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR  160 (258)
T COG3638          82 DIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR  160 (258)
T ss_pred             hce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence            556 4555542  1111111                             247889999999999999999998 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEec
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFSL  495 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~~  495 (623)
                      +++.+|+++|.|||++.|||.....++..+.+.-.+.|.|+|++-|+.+++ .+|++++.+.+|+++||.
T Consensus       161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg  230 (258)
T COG3638         161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG  230 (258)
T ss_pred             HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence            999999999999999999999999999955444445689999999999965 799999999999999984

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=2e-27  Score=232.60  Aligned_cols=166  Identities=21%  Similarity=0.340  Sum_probs=141.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeecC
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPA  386 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp~  386 (623)
                      .+++++|+|+||++.+  ++||++++| ++++++||||+||||++|+| |++.+-                .++| |+|-
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPE   79 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPE   79 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChh
Confidence            3689999999999776  999999999 99999999999999999999 777541                1333 6776


Q ss_pred             CCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          387 KNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       387 ~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      +..  ..+.+.                     +.++.+++......+++.+||-|++ ++.++.+++++|.|||||||++
T Consensus        80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS  159 (300)
T COG4152          80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS  159 (300)
T ss_pred             hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence            541  233332                     3457788888888899999999998 7999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||.....|-.++.+ +++.|+|||++||.++ +..+||+...+..|..+++
T Consensus       160 GLDPVN~elLk~~I~~-lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~  211 (300)
T COG4152         160 GLDPVNVELLKDAIFE-LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLY  211 (300)
T ss_pred             CCChhhHHHHHHHHHH-HHhcCCEEEEecchHHHHHHHhhhhheecCCceEEe
Confidence            9999999999996665 7888999999999998 8899999999999988876

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.95  E-value=5.1e-27  Score=246.42  Aligned_cols=168  Identities=20%  Similarity=0.234  Sum_probs=137.4

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhcee
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY  383 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~  383 (623)
                      .+++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                  .+...|
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~   81 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV   81 (303)
T ss_pred             cEEEEEeEEEEeCCeEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence            35889999999987655  999999999 99999999999999999999 776421                  122347


Q ss_pred             ecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+....  .+++.                     +.++..+|+.+..++.+++|||||+ |+.+|++++.+|+++||||
T Consensus        82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  161 (303)
T TIGR01288        82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE  161 (303)
T ss_pred             EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            7776421  12222                     2345566777778899999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+|||+.....+... +..+.+.|.|+|++||+++ +..+|++++.+.+|++...
T Consensus       162 Pt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~  216 (303)
T TIGR01288       162 PTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE  216 (303)
T ss_pred             CCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999994 5556666889999999988 5679999999999998765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=4e-27  Score=233.25  Aligned_cols=161  Identities=22%  Similarity=0.241  Sum_probs=130.7

Q ss_pred             EceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeecCCC
Q 006974          329 VGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPAKN  388 (623)
Q Consensus       329 ~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp~~~  388 (623)
                      ++||++.|++ ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                .+...|+|+..
T Consensus         2 ~~~l~~~~~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~   80 (205)
T cd03226           2 IENISFSYKKGTEILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV   80 (205)
T ss_pred             cccEEEEeCCcCceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence            5789999976 555  999999999 99999999999999999999 765421                11234677763


Q ss_pred             C---CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          389 H---PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       389 ~---~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                      .   ...++                 +..++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+.
T Consensus        81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  160 (205)
T cd03226          81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK  160 (205)
T ss_pred             hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence            1   11122                 23456777888888899999999999 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceE
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAAT  491 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~  491 (623)
                      ....+.. ++..+.+.+.++|++||+.+ +..+|+++..+.+|++
T Consensus       161 ~~~~l~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i  204 (205)
T cd03226         161 NMERVGE-LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI  204 (205)
T ss_pred             HHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            9999998 55556566889999999987 5578999999998875

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.94  E-value=6.6e-27  Score=234.22  Aligned_cols=166  Identities=23%  Similarity=0.293  Sum_probs=134.3

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp  385 (623)
                      ++++|++++|++..+  +++|++.+| ++++|+||||||||||||+| |++.+.                  .+...|+|
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence            368899999987666  999999999 99999999999999999999 765431                  01234677


Q ss_pred             CCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +....  .+++                     ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt  159 (220)
T cd03265          80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT  159 (220)
T ss_pred             CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            76421  1111                     22345677888788899999999999 799999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+.....+...+. .+.++ +.++|++||+.+ +..+|++++.+.+|++...
T Consensus       160 ~~LD~~~~~~l~~~l~-~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~  213 (220)
T cd03265         160 IGLDPQTRAHVWEYIE-KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE  213 (220)
T ss_pred             cCCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence            9999999999999554 45544 789999999987 5678999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.94  E-value=5e-27  Score=234.35  Aligned_cols=162  Identities=15%  Similarity=0.225  Sum_probs=130.4

Q ss_pred             EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hh
Q 006974          327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SK  379 (623)
Q Consensus       327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~  379 (623)
                      ++++|+++.|++  ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                      .+
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            678999999964  334  999999999 99999999999999999999 765421                      11


Q ss_pred             hceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          380 AGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       380 ~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ...|+|+....  .+++.                     ..++..+|+.+..++.+++|||||+ |++++++++.+|+++
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  160 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL  160 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            23577776421  11221                     2345667787788899999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA  490 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~  490 (623)
                      ||||||+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus       161 llDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~  215 (216)
T TIGR00960       161 LADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR  215 (216)
T ss_pred             EEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999999999999994 5556666889999999987 557899998888875

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.94  E-value=9.7e-27  Score=238.60  Aligned_cols=169  Identities=17%  Similarity=0.209  Sum_probs=137.9

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeecCC
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAK  387 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp~~  387 (623)
                      .+++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+-              .+...|+|+.
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~   89 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD   89 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence            56899999999987655  999999999 99999999999999999999 766431              1123467776


Q ss_pred             CCC--CccH---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974          388 NHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG  449 (623)
Q Consensus       388 ~~~--~l~~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~  449 (623)
                      ...  ..++               +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus        90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~  169 (257)
T PRK11247         90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR  169 (257)
T ss_pred             ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence            411  1112               23456677888888999999999999 79999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ..+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus       170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~  215 (257)
T PRK11247        170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD  215 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence            99999555443455889999999987 5689999999999998764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.94  E-value=8.9e-27  Score=233.29  Aligned_cols=166  Identities=21%  Similarity=0.251  Sum_probs=132.4

Q ss_pred             EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeec
Q 006974          327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp  385 (623)
                      ++++|+++.|++    ..+  ++||++.+| ++++|+||||||||||||++ |+..+.              .+...|+|
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~   79 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF   79 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence            357899999986    445  999999999 99999999999999999999 765431              11234677


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +...  ..+++                     ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt  159 (220)
T cd03293          80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF  159 (220)
T ss_pred             cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence            6531  11111                     12345667777778889999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee--CceEEE
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEF  493 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~--~g~~~~  493 (623)
                      +|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.  +|++..
T Consensus       160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~  214 (220)
T cd03293         160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA  214 (220)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence            9999999999999555433445789999999987 678999999998  688754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.94  E-value=9.9e-27  Score=225.98  Aligned_cols=154  Identities=25%  Similarity=0.347  Sum_probs=128.9

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-----------------
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-----------------  389 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-----------------  389 (623)
                      ++||++.|++..+  ++||++.+| ++++|+||||||||||++++        +|...|.+|.                 
T Consensus         2 ~~~l~~~~~~~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~~~   72 (180)
T cd03214           2 VENLSVGYGGRTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTL--------AGLLKPSSGEILLDGKDLASLSPKELA   72 (180)
T ss_pred             eeEEEEEECCeeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCcEEEECCEECCcCCHHHHH
Confidence            6789999987555  999999999 99999999999999999999        4433333321                 


Q ss_pred             CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEE
Q 006974          390 PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLA  467 (623)
Q Consensus       390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~v  467 (623)
                      ..+.++.+++..+|+.+.+++.+.+||+|++ |++++++++.+|+++||||||+|+|+.....+... +..++++ +.|+
T Consensus        73 ~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~-l~~~~~~~~~ti  151 (180)
T cd03214          73 RKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL-LRRLARERGKTV  151 (180)
T ss_pred             HHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhcCCEE
Confidence            1234444577888998888999999999999 79999999999999999999999999999999994 4555554 7899


Q ss_pred             EEEcCchhH-HhhccccceeeCceEE
Q 006974          468 VVTTHYADL-SCLKDKDTRFENAATE  492 (623)
Q Consensus       468 ii~TH~~~l-~~~~~~~~~i~~g~~~  492 (623)
                      |++||+.+. ..+|++++.+.+|++.
T Consensus       152 ii~sh~~~~~~~~~d~~~~l~~g~i~  177 (180)
T cd03214         152 VMVLHDLNLAARYADRVILLKDGRIV  177 (180)
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999884 5899999999999875

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.94  E-value=1e-26  Score=231.50  Aligned_cols=165  Identities=16%  Similarity=0.203  Sum_probs=132.8

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~  386 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.+                 +...|+|+
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q   79 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ   79 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence            357899999987655  999999999 99999999999999999999 7764310                 11346666


Q ss_pred             CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      ....  ..++                     ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~  159 (213)
T cd03301          80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS  159 (213)
T ss_pred             ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            5311  1111                     12346677888788999999999999 7999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |||+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus       160 ~LD~~~~~~l~~~l~-~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~  211 (213)
T cd03301         160 NLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ  211 (213)
T ss_pred             cCCHHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            999999999999544 4554 5889999999987 567899999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.94  E-value=6.8e-27  Score=233.63  Aligned_cols=162  Identities=22%  Similarity=0.293  Sum_probs=129.7

Q ss_pred             EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      ++++||++.|++    ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                      
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF   79 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence            357899999976    445  999999999 99999999999999999999 775421                      


Q ss_pred             -hhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          378 -SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       378 -a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                       .+...|+|+...  ..+++                     ++.++..+|+.+..++.+++||+||+ |++++++++.+|
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (218)
T cd03255          80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP  159 (218)
T ss_pred             HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence             112346666531  11111                     23456677887778899999999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCce
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA  490 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~  490 (623)
                      +++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+...+|++++.+.+|+
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~  217 (218)
T cd03255         160 KIILADEPTGNLDSETGKEVMELL-RELNKEAGTTIVVVTHDPELAEYADRIIELRDGK  217 (218)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence            999999999999999999999954 45555 5889999999988555899998888875

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.94  E-value=1e-26  Score=235.25  Aligned_cols=166  Identities=20%  Similarity=0.244  Sum_probs=133.6

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhhc
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKAG  381 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~G  381 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                      .+..
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence            357899999987655  999999999 99999999999999999999 665421                      1123


Q ss_pred             eeecCCCC--CCccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNH--PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~--~~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      .|+|+...  ..+++.                      ..++..+|+.+..++.+++|||||+ |++++++++.+|+++|
T Consensus        80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll  159 (235)
T cd03261          80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL  159 (235)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            46777641  111221                      2345666777777889999999999 7999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|||+.....+... +..+.+ .+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       160 lDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~  218 (235)
T cd03261         160 YDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE  218 (235)
T ss_pred             ecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence            9999999999999999994 445555 4889999999987 5678999999999998654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.94  E-value=1e-26  Score=230.79  Aligned_cols=165  Identities=23%  Similarity=0.270  Sum_probs=133.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~  386 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.                 .+...|+|+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE   79 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence            367899999977655  999999999 99999999999999999999 665421                 112347777


Q ss_pred             CCCC--CccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          387 KNHP--RLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       387 ~~~~--~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      ....  ..++                 ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|||+
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~  159 (208)
T cd03268          80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP  159 (208)
T ss_pred             CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence            6421  1122                 23345677888888899999999999 79999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      .....+.. ++..+.+.+.++|++||+.+ +..+|+++..+.+|++..
T Consensus       160 ~~~~~l~~-~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~  206 (208)
T cd03268         160 DGIKELRE-LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE  206 (208)
T ss_pred             HHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence            99999998 55556656889999999988 557899999999998753

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.94  E-value=1e-26  Score=231.16  Aligned_cols=165  Identities=19%  Similarity=0.270  Sum_probs=132.6

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------hhhceeecCCC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------SKAGLYLPAKN  388 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------a~~G~~vp~~~  388 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+|||||||||||+++ |+..+.               .....|+|+..
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence            367899999987655  999999999 99999999999999999999 765431               11234677664


Q ss_pred             CC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       389 ~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      ..  .+++                     +.+++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L  159 (210)
T cd03269          80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL  159 (210)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            21  1122                     12345666777778889999999999 799999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |+.....+... +..+.+++.|+|++||+.+ +..+|++++.+.+|++..
T Consensus       160 D~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  208 (210)
T cd03269         160 DPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL  208 (210)
T ss_pred             CHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence            99999999994 5556666889999999987 557899999999998753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.94  E-value=1.2e-26  Score=231.72  Aligned_cols=165  Identities=22%  Similarity=0.312  Sum_probs=134.2

Q ss_pred             EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhc
Q 006974          327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAG  381 (623)
Q Consensus       327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G  381 (623)
                      ++++||++.|++.    .+  +++|++.+| ++++|+||||||||||||+| |+..+.                  .+..
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence            6789999999865    45  999999999 99999999999999999999 765431                  1123


Q ss_pred             eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      .|+|+...  ..+++                     +++++..+|+.+.+++.+.+||+||+ |++++++++.+|+++||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl  160 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL  160 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            46777641  11111                     12356677888888999999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ||||+|||+.....+... +..+.+++.|+|++||+.+ +..+|+++..+.+|++..
T Consensus       161 DEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~  216 (218)
T cd03266         161 DEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY  216 (218)
T ss_pred             cCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence            999999999999999994 4555666889999999987 567899999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=8e-27  Score=229.82  Aligned_cols=167  Identities=22%  Similarity=0.271  Sum_probs=135.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------h-hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------M-SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~-a~~G~  382 (623)
                      +++++||+|.|++..+  ++||+++.| ++++++||+||||||+||+| .|+.+                   + .++| 
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG-   78 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG-   78 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh-
Confidence            3689999999998766  999999999 99999999999999999999 55532                   1 1222 


Q ss_pred             eecCCC--CCCccH---------------------HHHHHHHcCCc--hhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          383 YLPAKN--HPRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       383 ~vp~~~--~~~l~~---------------------~d~i~~~ig~~--~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ||-|.-  ++.+++                     .+.++..+|++  +..++.++.||||++ |+-.+++++.+|+++|
T Consensus        79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL  158 (309)
T COG1125          79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL  158 (309)
T ss_pred             hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence            333321  111221                     34567778875  578999999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||++.+||..+..|-.-+.+--++-+.|+||+|||++. ..++|++.++..|+++-.
T Consensus       159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~  217 (309)
T COG1125         159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY  217 (309)
T ss_pred             ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe
Confidence            9999999999999999997666555668999999999985 479999999999987643

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.94  E-value=1.4e-26  Score=233.49  Aligned_cols=166  Identities=22%  Similarity=0.287  Sum_probs=134.2

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhcee
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~~  383 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+-                   . +...|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence            367899999987655  999999999 99999999999999999999 765421                   0 11346


Q ss_pred             ecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+...  ..+++                     ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  159 (232)
T cd03218          80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE  159 (232)
T ss_pred             ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            676541  11111                     12345566777778899999999999 7999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       160 Pt~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  214 (232)
T cd03218         160 PFAGVDPIAVQDIQK-IIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE  214 (232)
T ss_pred             CcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence            999999999999999 55566666889999999986 7789999999999988644

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=1.1e-26  Score=230.93  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=127.6

Q ss_pred             EceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceee
Q 006974          329 VGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL  384 (623)
Q Consensus       329 ~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~v  384 (623)
                      ++|+++.|++  ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   .+...|+
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            5789999976  555  999999999 99999999999999999999 665421                   1123477


Q ss_pred             cCCCC---CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          385 PAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       385 p~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      |+...   ...++.                     ..++..+|+.+.+++.++.||+||+ |++++++++.+|+++||||
T Consensus        81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  160 (211)
T cd03225          81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE  160 (211)
T ss_pred             ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            77631   111221                     2345667777778899999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCc
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA  489 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g  489 (623)
                      ||+|||+.....+...+ ..+.+++.++|++||+.+ +..+|++++.+.+|
T Consensus       161 Pt~~LD~~~~~~~~~~l-~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G  210 (211)
T cd03225         161 PTAGLDPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG  210 (211)
T ss_pred             CcccCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            99999999999999954 455555889999999987 55789999888776

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.94  E-value=1.4e-26  Score=230.75  Aligned_cols=161  Identities=17%  Similarity=0.214  Sum_probs=128.9

Q ss_pred             EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974          327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA  380 (623)
Q Consensus       327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~  380 (623)
                      ++++|+++.|+ +..+  ++||++.+| ++++|+||||||||||+|++ |+..+.                      .+.
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            67899999994 4444  999999999 99999999999999999999 765320                      112


Q ss_pred             ceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       381 G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ..|+|+....  ..++                     +..++..+|+.+..++.+++||+||+ |++++++++.+|+++|
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  160 (214)
T TIGR02673        81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL  160 (214)
T ss_pred             eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence            3467765311  1111                     12345667777778889999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCc
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA  489 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g  489 (623)
                      |||||+|+|+.....+...+. .+.+++.|+|++||+.+ +..+||++..+.+|
T Consensus       161 LDEPt~~LD~~~~~~l~~~l~-~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G  213 (214)
T TIGR02673       161 ADEPTGNLDPDLSERILDLLK-RLNKRGTTVIVATHDLSLVDRVAHRVIILDDG  213 (214)
T ss_pred             EeCCcccCCHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence            999999999999999999544 45666889999999987 56789998888776

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.94  E-value=2.3e-26  Score=232.17  Aligned_cols=166  Identities=17%  Similarity=0.170  Sum_probs=134.2

Q ss_pred             EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      ++++|+++.|++.    .+  ++||++.+| ++++|+||||||||||||++ |+..+.                      
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            6789999999865    44  999999999 99999999999999999999 665421                      


Q ss_pred             hhhceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          378 SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       378 a~~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .+...|+|+....  .+++.                     ..++..+|+.+..++.+++||+||+ |++++++++.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK  160 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            1223577776421  12222                     2345667777778899999999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~  222 (233)
T cd03258         161 VLLCDEATSALDPETTQSILALLR-DINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE  222 (233)
T ss_pred             EEEecCCCCcCCHHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999554 4554 4889999999988 5678999999999998754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.94  E-value=2.1e-26  Score=229.04  Aligned_cols=166  Identities=18%  Similarity=0.254  Sum_probs=132.8

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecCCC
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAKN  388 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~~~  388 (623)
                      ++++|++++|++..+++||++.+| ++++|+||||||||||||++ |+..+..                 +...|+|+..
T Consensus         1 i~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   79 (211)
T cd03298           1 VRLDKIRFSYGEQPMHFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN   79 (211)
T ss_pred             CEEEeEEEEeCCEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence            357899999987666999999999 99999999999999999999 6664311                 1134667654


Q ss_pred             CC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          389 HP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       389 ~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      ..  .+++                     +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+
T Consensus        80 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~L  159 (211)
T cd03298          80 NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL  159 (211)
T ss_pred             ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            11  1111                     22345666777778889999999999 799999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |+.....+...+.+...+.+.|+|++||+.+ +..+||+++.+.+|++..
T Consensus       160 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  209 (211)
T cd03298         160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA  209 (211)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence            9999999999555433345889999999988 567899999999998753

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.94  E-value=4.6e-26  Score=231.40  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=132.8

Q ss_pred             EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974          327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA  380 (623)
Q Consensus       327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~  380 (623)
                      ++++||++.|+ +..+  ++||++.+| ++++|+||||||||||||+| |+..+.                      .+.
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            67899999997 5555  999999999 99999999999999999999 665321                      112


Q ss_pred             ceeecCCCCC--CccH-----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHh
Q 006974          381 GLYLPAKNHP--RLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       381 G~~vp~~~~~--~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                      ..|+|+....  .+++                             +..++..+|+....++.+++||+||+ |+++++++
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  160 (243)
T TIGR02315        81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL  160 (243)
T ss_pred             eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence            3567776311  1111                             12345567777778899999999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|+|+.....+... +..+. +.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~  227 (243)
T TIGR02315       161 AQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD  227 (243)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence            999999999999999999999999984 44454 44789999999988 4579999999999987643

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=2.3e-27  Score=226.11  Aligned_cols=167  Identities=22%  Similarity=0.335  Sum_probs=143.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc-e
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-L  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G-~  382 (623)
                      .+.++|+.|+|+.+.|  ++||++.+| +++++.||||+||||.+.++ |++.+                   .|+.| .
T Consensus         4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig   82 (243)
T COG1137           4 TLVAENLAKSYKKRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG   82 (243)
T ss_pred             EEEehhhhHhhCCeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence            5788999999998777  999999999 99999999999999999999 88764                   24555 4


Q ss_pred             eecCCCC--CCccH-----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          383 YLPAKNH--PRLPW-----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       383 ~vp~~~~--~~l~~-----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      |+||+.+  -.+++                       .+.++..+++....+++..+||||++ |+-+|++++.+|+++|
T Consensus        83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL  162 (243)
T COG1137          83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL  162 (243)
T ss_pred             cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence            8898762  12333                       23456667777777889999999999 7899999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-hHHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||++|.||.....+-. ++.+|+++|.-|++|-|+. +...+||+.+++..|++.+.
T Consensus       163 LDEPFAGVDPiaV~dIq~-iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~  220 (243)
T COG1137         163 LDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE  220 (243)
T ss_pred             ecCCccCCCchhHHHHHH-HHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence            999999999999999988 8999999999999999995 57789999999999998765

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.94  E-value=3e-26  Score=247.95  Aligned_cols=167  Identities=22%  Similarity=0.275  Sum_probs=138.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   ++...+
T Consensus         3 ~L~~~nls~~y~~~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~   81 (402)
T PRK09536          3 MIDVSDLSVEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS   81 (402)
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence            4789999999988766  999999999 99999999999999999999 776431                   122346


Q ss_pred             ecCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       384 vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      +|+....  .+++                         ++.++..+|+.+..++.+.+||+||+ |+.++++++.+|+++
T Consensus        82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL  161 (402)
T PRK09536         82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL  161 (402)
T ss_pred             EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            7776421  1111                         23456777888888999999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+.. ++..+.+.+.|+|++||++++ ..+|++++.+.+|++..+
T Consensus       162 LLDEPtsgLD~~~~~~l~~-lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~  220 (402)
T PRK09536        162 LLDEPTASLDINHQVRTLE-LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA  220 (402)
T ss_pred             EEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999998 566676668899999999985 589999999999998764

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.94  E-value=3.7e-26  Score=231.04  Aligned_cols=166  Identities=21%  Similarity=0.250  Sum_probs=133.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~  383 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                    .....|
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            357899999987655  999999999 99999999999999999999 765421                    011346


Q ss_pred             ecCCCC--CCccH-------------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc
Q 006974          384 LPAKNH--PRLPW-------------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       384 vp~~~~--~~l~~-------------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      +|+...  ..+++                               +..++..+|+....++.+++|||||+ |++++++++
T Consensus        80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  159 (236)
T cd03219          80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA  159 (236)
T ss_pred             EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence            777631  01111                               22345566777777889999999999 799999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       160 ~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~  224 (236)
T cd03219         160 TDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE  224 (236)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence            99999999999999999999999994 4455656889999999988 5578999999999988654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.5e-26  Score=232.60  Aligned_cols=167  Identities=20%  Similarity=0.239  Sum_probs=138.0

Q ss_pred             cEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhc
Q 006974          326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G  381 (623)
                      ++.++++++.|++. .+  ++++++.+| +.++|+||||||||||++++ |++.+-                    .+..
T Consensus         3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           3 MIEAENLSFRYPGRKAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             eEEEEEEEEEcCCCceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence            57889999999764 44  999999999 99999999999999999999 666431                    1223


Q ss_pred             eeecCCCCCCc---cH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNHPRL---PW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~~~l---~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      .+|+|.+...+   ++                     ++.++..+|+.+..++.+.+||||++ |+++|..++.+|.++|
T Consensus        82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili  161 (235)
T COG1122          82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL  161 (235)
T ss_pred             EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence            35655542111   01                     34567888999999999999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+||||..+..+.. ++..+.+. |.|+|++|||++ +..+|++++.+.+|++..+
T Consensus       162 LDEPta~LD~~~~~~l~~-~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~  220 (235)
T COG1122         162 LDEPTAGLDPKGRRELLE-LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD  220 (235)
T ss_pred             EcCCCCCCCHHHHHHHHH-HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeec
Confidence            999999999999999999 66667765 689999999998 6678999999999998655

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.94  E-value=2.3e-26  Score=241.21  Aligned_cols=165  Identities=19%  Similarity=0.287  Sum_probs=136.5

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp  385 (623)
                      ++++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                  .+...|+|
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~   81 (301)
T TIGR03522         3 IRVSSLTKLYGTQNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP   81 (301)
T ss_pred             EEEEEEEEEECCEEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence            678999999987666  999999999 99999999999999999999 775431                  11234777


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +...  ..+++                     ++.++..+|+.+..++.+++||+||+ |+.++++++.+|+++||||||
T Consensus        82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt  161 (301)
T TIGR03522        82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT  161 (301)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            7642  11122                     23445667888888999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||.....+... +..+++ +.|+|++||+++ +..+|+++..+.+|++.+.
T Consensus       162 ~gLD~~~~~~l~~~-l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~  213 (301)
T TIGR03522       162 TGLDPNQLVEIRNV-IKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVAD  213 (301)
T ss_pred             ccCCHHHHHHHHHH-HHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999994 555665 689999999987 7789999999999999865

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.1e-26  Score=234.70  Aligned_cols=167  Identities=16%  Similarity=0.201  Sum_probs=132.9

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------hhceeecCCCC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH  389 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------~~G~~vp~~~~  389 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+..              ....|+|+...
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~   80 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG   80 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence            678999999987655  999999999 99999999999999999999 7764321              11246676531


Q ss_pred             --CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974          390 --PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD  445 (623)
Q Consensus       390 --~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD  445 (623)
                        ...++                     +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||
T Consensus        81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD  160 (255)
T PRK11248         81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD  160 (255)
T ss_pred             cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence              11111                     22345677777777889999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee--CceEEEe
Q 006974          446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--NAATEFS  494 (623)
Q Consensus       446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~--~g~~~~~  494 (623)
                      +.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.  +|++...
T Consensus       161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~  212 (255)
T PRK11248        161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER  212 (255)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence            999999999544433445889999999988 568999999998  4777554

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.94  E-value=3.4e-26  Score=231.99  Aligned_cols=166  Identities=19%  Similarity=0.213  Sum_probs=134.0

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~  386 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.                 .+...|+|+
T Consensus         3 l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   81 (239)
T cd03296           3 IEVRNVSKRFGDFVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ   81 (239)
T ss_pred             EEEEeEEEEECCEEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence            678999999987655  999999999 99999999999999999999 765431                 012346676


Q ss_pred             CCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          387 KNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       387 ~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      ....  .+++                         ++.++..+|+....++.+++||+||+ |++++++++.+|+++|||
T Consensus        82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  161 (239)
T cd03296          82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD  161 (239)
T ss_pred             CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            5311  1111                         12345666777777889999999999 899999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          439 EIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||+|||+.....+.. ++..+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       162 EP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~  218 (239)
T cd03296         162 EPFGALDAKVRKELRR-WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV  218 (239)
T ss_pred             CCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence            9999999999999999 4555554 4789999999987 5788999999999988654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.94  E-value=2.6e-26  Score=228.52  Aligned_cols=162  Identities=22%  Similarity=0.258  Sum_probs=130.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhce
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~  382 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.                     .+...
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence            357899999987655  999999999 99999999999999999999 765421                     11234


Q ss_pred             eecCCCCC--CccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          383 YLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       383 ~vp~~~~~--~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      |+|+....  .+++.                      ..++..+|+...+++.+.+||+||+ |++++++++.+|+++||
T Consensus        80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  159 (213)
T cd03262          80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF  159 (213)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            67765421  11221                      2345566777778899999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA  490 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~  490 (623)
                      ||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|+++..+.+|+
T Consensus       160 DEP~~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~  212 (213)
T cd03262         160 DEPTSALDPELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR  212 (213)
T ss_pred             eCCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999999999999 45556666789999999987 567999998888775

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.94  E-value=6.4e-26  Score=231.39  Aligned_cols=167  Identities=21%  Similarity=0.214  Sum_probs=134.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||+|++ |++.+.                         
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence            4789999999987655  999999999 99999999999999999999 665321                         


Q ss_pred             --hhhceeecCCCCC--CccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          378 --SKAGLYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       378 --a~~G~~vp~~~~~--~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                        .+...|+|+....  ..+..                      ..++..+|+.+..++.+++||+||+ |++++++++.
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~  161 (250)
T PRK11264         82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM  161 (250)
T ss_pred             HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence              1123467765311  11221                      2235556777777889999999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus       162 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~  225 (250)
T PRK11264        162 RPEVILFDEPTSALDPELVGEVLN-TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ  225 (250)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            999999999999999999999999 55556666889999999987 5578999999999988654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.94  E-value=3.5e-26  Score=231.52  Aligned_cols=166  Identities=20%  Similarity=0.208  Sum_probs=133.9

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~vp  385 (623)
                      ++++|++++|++..+  ++||++.+| ++++|+||||||||||+++| |+..+.+                  +...|+|
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~   80 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF   80 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence            678999999987665  999999999 99999999999999999999 6654310                  1234777


Q ss_pred             CCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +....  ..++.                     ..++..+|+.+.+++.+++||+||+ |++++++++.+|+++||||||
T Consensus        81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  160 (236)
T TIGR03864        81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT  160 (236)
T ss_pred             CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            65321  11111                     2345667777778899999999999 799999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+|+.....+...+. .+. +.+.|+|++||+.+....|++++.+.+|++...
T Consensus       161 ~~LD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~  213 (236)
T TIGR03864       161 VGLDPASRAAIVAHVR-ALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD  213 (236)
T ss_pred             cCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence            9999999999999555 455 458899999999985556999999999988654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.94  E-value=3.4e-26  Score=229.37  Aligned_cols=164  Identities=13%  Similarity=0.141  Sum_probs=132.2

Q ss_pred             EEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974          327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA  380 (623)
Q Consensus       327 l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~  380 (623)
                      ++++|+++.| ++..+  ++||++.+| ++++|+||||||||||+|+| |+..+-                      .+.
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence            6789999999 55554  999999999 99999999999999999999 665421                      112


Q ss_pred             ceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          381 GLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       381 G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ..|+|+....  ..++                     ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++|
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (222)
T PRK10908         81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL  160 (222)
T ss_pred             eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            3477776421  1111                     12345667777778899999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                      |||||+|||+.....+.. ++..+.+.+.++|++||+.+ +..+|++++.+.+|++.
T Consensus       161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        161 ADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             EeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence            999999999999999999 45556666889999999987 56789999999998864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.94  E-value=3.6e-26  Score=216.41  Aligned_cols=168  Identities=16%  Similarity=0.212  Sum_probs=137.4

Q ss_pred             cEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------hhh
Q 006974          326 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSK  379 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------------~a~  379 (623)
                      +|+++||+|.|++.. .  ++||++++| +++-|+||+|||||||||+| +...+                      +.+
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            368899999997654 3  999999999 99999999999999999999 32221                      222


Q ss_pred             hceeecCCCC--CCccHHH---------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          380 AGLYLPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       380 ~G~~vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ....|+|+..  ...+++|                     .++..+|+.+..+..++.||||++ |+++|++.+++|.+|
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL  159 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL  159 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence            2235666531  1122232                     457888999999999999999998 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEec
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~~  495 (623)
                      |.||||.+|||.....|.. +++.+...|.||+++|||.++ ..+..++..+.+|.+.-+.
T Consensus       160 lADEPTGNLDp~~s~~im~-lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         160 LADEPTGNLDPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             eecCCCCCCChHHHHHHHH-HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence            9999999999999999999 888899999999999999985 4566777889999987664

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.94  E-value=7.9e-26  Score=229.26  Aligned_cols=166  Identities=20%  Similarity=0.257  Sum_probs=132.1

Q ss_pred             EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974          327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA  380 (623)
Q Consensus       327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~  380 (623)
                      ++++||+++|++ ..+  ++||++.+| ++++|+||||||||||||++ |++.+-                      .+.
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence            357899999986 555  999999999 99999999999999999999 665421                      112


Q ss_pred             ceeecCCCC--CCccHH-----------------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHh
Q 006974          381 GLYLPAKNH--PRLPWF-----------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       381 G~~vp~~~~--~~l~~~-----------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                      ..|+|+...  ..+++.                             ..++..+|+....++.+.+||+||+ |+++++++
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  159 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL  159 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence            346776531  111111                             2235566777777889999999999 79999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+... +..+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~  226 (241)
T cd03256         160 MQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD  226 (241)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence            999999999999999999999999994 445554 5889999999988 4569999999999988654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.2e-26  Score=235.74  Aligned_cols=166  Identities=17%  Similarity=0.194  Sum_probs=134.2

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhce
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~  382 (623)
                      ++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                     .+...
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~   80 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA   80 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence            678999999987655  999999999 99999999999999999999 665421                     11234


Q ss_pred             eecCCCCC---CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          383 YLPAKNHP---RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       383 ~vp~~~~~---~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      |+|+....   ...+                     ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||
T Consensus        81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL  160 (271)
T PRK13638         81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL  160 (271)
T ss_pred             EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            77776310   0011                     12345566777777889999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~  217 (271)
T PRK13638        161 DEPTAGLDPAGRTQMIA-IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH  217 (271)
T ss_pred             eCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999 45556666889999999988 5578999999999998765

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.94  E-value=4.6e-26  Score=228.08  Aligned_cols=163  Identities=21%  Similarity=0.234  Sum_probs=129.9

Q ss_pred             EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      ++++||++.|++    ..+  ++||++.+| ++++|+||||||||||||++ |+..+.                      
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence            678999999964    234  999999999 99999999999999999999 665320                      


Q ss_pred             h-hhceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          378 S-KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       378 a-~~G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      . +...|+|+....  .+++                     +..++..+|+.+..++.+++||+||+ |++++++++.+|
T Consensus        81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (221)
T TIGR02211        81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP  160 (221)
T ss_pred             HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence            0 223577776411  1122                     12345667777778899999999999 799999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceE
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAAT  491 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~  491 (623)
                      +++||||||+|||+.....+...+ ..+.+ .+.|+|++||+.+....+++++.+.+|++
T Consensus       161 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i  219 (221)
T TIGR02211       161 SLVLADEPTGNLDNNNAKIIFDLM-LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL  219 (221)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence            999999999999999999999954 45554 57899999999986666888888888875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.94  E-value=5.5e-26  Score=243.39  Aligned_cols=169  Identities=18%  Similarity=0.214  Sum_probs=138.8

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------------------hhc
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAG  381 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------------------~~G  381 (623)
                      .+.++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+-+                   +..
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i   81 (362)
T TIGR03258         3 CGGIRIDHLRVAYGANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL   81 (362)
T ss_pred             ceEEEEEEEEEEECCeEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence            467899999999987655  999999999 99999999999999999999 7665432                   112


Q ss_pred             eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      .|+|+...  ..+++                     ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++||
T Consensus        82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL  161 (362)
T TIGR03258        82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL  161 (362)
T ss_pred             EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            36666541  11122                     23456677888889999999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~--~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||++|||+..+..+...+. .+.++  |.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 DEP~s~LD~~~r~~l~~~l~-~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~  220 (362)
T TIGR03258       162 DEPLSALDANIRANMREEIA-ALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH  220 (362)
T ss_pred             cCccccCCHHHHHHHHHHHH-HHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999554 55554  789999999987 5689999999999998754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.94  E-value=4.2e-26  Score=228.48  Aligned_cols=166  Identities=22%  Similarity=0.272  Sum_probs=131.6

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~  383 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+|||||||||||+++ |++.+.                    .+...|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            367899999987655  999999999 99999999999999999999 665421                    112346


Q ss_pred             ecCCCC--CCccHHH-------------------HHHHHc-CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974          384 LPAKNH--PRLPWFD-------------------LILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI  440 (623)
Q Consensus       384 vp~~~~--~~l~~~d-------------------~i~~~i-g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp  440 (623)
                      +|+...  ..+++.+                   .++..+ +..+..++.+++||+||+ |++++++++.+|+++|||||
T Consensus        80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  159 (222)
T cd03224          80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP  159 (222)
T ss_pred             eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            777641  1112211                   233444 355667888999999999 79999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+|||+.....+... +..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       160 t~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  213 (222)
T cd03224         160 SEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE  213 (222)
T ss_pred             cccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence            999999999999995 4455656889999999988 5789999999999987654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.94  E-value=5.2e-26  Score=230.75  Aligned_cols=166  Identities=21%  Similarity=0.245  Sum_probs=134.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhce
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~  382 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||++++ |++.+.                     .+...
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   80 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG   80 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence            678999999987655  999999999 99999999999999999999 765421                     11234


Q ss_pred             eecCCCCC--CccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          383 YLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       383 ~vp~~~~~--~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      |+|+....  .+++                      +..++..+|+...+++.+++||+||+ |++++++++.+|+++||
T Consensus        81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  160 (240)
T PRK09493         81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF  160 (240)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            67765311  1111                      12345677777778899999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|+|+.....+.. ++..+.+++.++|++||+.+ +..+|++++.+.+|++...
T Consensus       161 DEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  217 (240)
T PRK09493        161 DEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED  217 (240)
T ss_pred             cCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence            99999999999999999 55556666889999999988 4578999999999998754

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.94  E-value=3.2e-26  Score=228.02  Aligned_cols=162  Identities=15%  Similarity=0.194  Sum_probs=128.8

Q ss_pred             EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974          327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA  380 (623)
Q Consensus       327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~  380 (623)
                      ++++|+++.|++ ..+  ++||++.+| ++++|+||||||||||||++ |+..+.                      .+.
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence            357899999964 344  999999999 99999999999999999999 665321                      112


Q ss_pred             ceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ..|+|+...  ..+++                     ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++|
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  159 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI  159 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence            356777641  11111                     12345666777778889999999999 7999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA  490 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~  490 (623)
                      |||||+|||+.....+...+ ..+.+++.|+|++||+.+ +..+|+++..+.+|+
T Consensus       160 lDEPt~~LD~~~~~~~~~~l-~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~  213 (214)
T cd03292         160 ADEPTGNLDPDTTWEIMNLL-KKINKAGTTVVVATHAKELVDTTRHRVIALERGK  213 (214)
T ss_pred             EeCCCCcCCHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999999999999954 456666889999999987 556899998888775

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=7.2e-26  Score=228.61  Aligned_cols=167  Identities=20%  Similarity=0.273  Sum_probs=135.0

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecCCC
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAKN  388 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~~~  388 (623)
                      ++++||+++|++...++||++.+| ++++|+||||||||||||++ |+..+.+                 ....|+|+..
T Consensus         2 l~~~~l~~~~~~~~~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~   80 (232)
T PRK10771          2 LKLTDITWLYHHLPMRFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQEN   80 (232)
T ss_pred             eEEEEEEEEECCccceeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEeccc
Confidence            678999999987666999999999 99999999999999999999 7654311                 1234667653


Q ss_pred             C--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          389 H--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       389 ~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      .  ..+++                     +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+||
T Consensus        81 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gL  160 (232)
T PRK10771         81 NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL  160 (232)
T ss_pred             ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            1  01111                     22345667887788999999999999 799999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~  211 (232)
T PRK10771        161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD  211 (232)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999555443445889999999988 5678999999999988654

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.93  E-value=5.9e-26  Score=234.45  Aligned_cols=167  Identities=20%  Similarity=0.181  Sum_probs=135.0

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------hhh
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------SKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a~~  380 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |++.+.                      .+.
T Consensus         7 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~   85 (269)
T PRK11831          7 LVDMRGVSFTRGNRCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR   85 (269)
T ss_pred             eEEEeCeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence            5889999999987655  999999999 99999999999999999999 665421                      112


Q ss_pred             ceeecCCCCC--CccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          381 GLYLPAKNHP--RLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       381 G~~vp~~~~~--~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ..|+|+....  .+++.+                      .++..+|+.+..++.+++|||||+ |+.++++++.+|+++
T Consensus        86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  165 (269)
T PRK11831         86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI  165 (269)
T ss_pred             EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3467776421  112222                      234566777778889999999999 799999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+...+. .+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       166 lLDEPt~~LD~~~~~~l~~~l~-~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~  225 (269)
T PRK11831        166 MFDEPFVGQDPITMGVLVKLIS-ELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH  225 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHH-HHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence            9999999999999999999554 5554 4789999999987 6688999999999988754

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.93  E-value=5.7e-26  Score=227.25  Aligned_cols=165  Identities=23%  Similarity=0.321  Sum_probs=132.3

Q ss_pred             EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhcee
Q 006974          327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~  383 (623)
                      ++++||++.|++  ..+  ++||++.+| ++++|+||||||||||||++ |+..+.                  .+...|
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~   79 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY   79 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence            367899999976  455  999999999 99999999999999999999 665431                  111346


Q ss_pred             ecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+....  ..++                     ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||
T Consensus        80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  159 (220)
T cd03263          80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE  159 (220)
T ss_pred             ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            6765311  1111                     12345667887778889999999999 7999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       160 P~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  213 (220)
T cd03263         160 PTSGLDPASRRAIWD-LILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCI  213 (220)
T ss_pred             CCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence            999999999999999 4555555 589999999988 4578999999999988654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=230.21  Aligned_cols=168  Identities=15%  Similarity=0.235  Sum_probs=135.0

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh-c
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA-G  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~-G  381 (623)
                      .+++++|+++.|++..+  ++||++.+| ++++|+||||||||||++++ |++.+.                   .+. .
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          4 PLLSVSGLMMRFGGLLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             ceEEEeeEEEEECCEEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence            36889999999987655  999999999 99999999999999999999 765421                   011 2


Q ss_pred             eeecCCCC--CCccHH------------------------------------HHHHHHcCCchhhhcccccccHHHH-HH
Q 006974          382 LYLPAKNH--PRLPWF------------------------------------DLILADIGDHQSLEQNLSTFSGHIS-RI  422 (623)
Q Consensus       382 ~~vp~~~~--~~l~~~------------------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl  422 (623)
                      .|+|+...  ..+++.                                    ..++..+|+.+..++.+++||+||+ |+
T Consensus        83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv  162 (255)
T PRK11300         83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL  162 (255)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence            35676531  111111                                    1234567777788899999999999 89


Q ss_pred             HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .++++++.+|+++||||||+|||+.....+.. ++..++++ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  235 (255)
T PRK11300        163 EIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN  235 (255)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence            99999999999999999999999999999999 45556554 889999999987 4578999999999988654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.93  E-value=4.5e-26  Score=239.18  Aligned_cols=158  Identities=22%  Similarity=0.292  Sum_probs=128.1

Q ss_pred             ecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeecCCCC--CC
Q 006974          335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAKNH--PR  391 (623)
Q Consensus       335 ~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp~~~~--~~  391 (623)
                      .|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                  .+...|+|+...  ..
T Consensus         2 ~y~~~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~   80 (302)
T TIGR01188         2 VYGDFKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED   80 (302)
T ss_pred             eeCCeeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence            4554444  999999999 99999999999999999999 776431                  112346777642  11


Q ss_pred             ccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974          392 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG  449 (623)
Q Consensus       392 l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~  449 (623)
                      +++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+||||...
T Consensus        81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~  160 (302)
T TIGR01188        81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR  160 (302)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence            111                     23456777888888999999999999 79999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ..+.. ++..+++.|.|+|++||+++ +..+|+++..+.+|++...
T Consensus       161 ~~l~~-~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~  205 (302)
T TIGR01188       161 RAIWD-YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAE  205 (302)
T ss_pred             HHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999 55556666889999999987 5679999999999998765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.8e-26  Score=242.22  Aligned_cols=166  Identities=15%  Similarity=0.179  Sum_probs=134.6

Q ss_pred             EEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      ++++||+++|+    +..+  ++||++.+| ++++|+||||||||||||++ |++.+.                      
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            67899999997    2344  999999999 99999999999999999999 776421                      


Q ss_pred             hhhceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          378 SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       378 a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .+...|+|+...  ..+++.                     ..++..+|+.+..++.+++|||||+ |+.+|++++.+|+
T Consensus        81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  160 (343)
T PRK11153         81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            122357777642  112222                     2345667888888899999999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|||+.....+...+ ..+.+ .|.|+|++||+++ +..+|++++.+.+|++...
T Consensus       161 iLlLDEPts~LD~~~~~~l~~~L-~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~  222 (343)
T PRK11153        161 VLLCDEATSALDPATTRSILELL-KDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ  222 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999954 44544 4889999999988 5678999999999998764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.93  E-value=9e-26  Score=227.17  Aligned_cols=167  Identities=19%  Similarity=0.265  Sum_probs=132.3

Q ss_pred             CcEEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974          325 SEMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------  377 (623)
                      .+++++||+++|++.    .+  ++||++.+| ++++|+||||||||||||++ |+..+.                    
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence            368899999999752    23  999999999 99999999999999999999 765421                    


Q ss_pred             ---hhhceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          378 ---SKAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       378 ---a~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                         .+...|+|+...  ..++..                     ..++..+|+.+..++.+++||+||+ |+.++++++.
T Consensus        84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~  163 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG  163 (228)
T ss_pred             HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence               012346776632  111222                     2345666777778889999999999 7999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEE
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE  492 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~  492 (623)
                      +|+++||||||+|||+.....+...+.+...+.+.++|++||+.+....|++++.+.+|++.
T Consensus       164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~  225 (228)
T PRK10584        164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ  225 (228)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999955443334578999999999866679999999998874

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.93  E-value=5.3e-26  Score=226.49  Aligned_cols=159  Identities=24%  Similarity=0.330  Sum_probs=128.0

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeecCCCCC-
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNHP-  390 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp~~~~~-  390 (623)
                      ++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.              .+...|+|+.... 
T Consensus         2 ~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~   80 (213)
T cd03235           2 VEDLTVSYGGHPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID   80 (213)
T ss_pred             cccceeEECCEEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence            5789999987555  999999999 99999999999999999999 775431              1223477765321 


Q ss_pred             ---CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          391 ---RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       391 ---~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                         ..+.                         +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus        81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  160 (213)
T cd03235          81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF  160 (213)
T ss_pred             cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence               0111                         22345666777778899999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCc
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENA  489 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g  489 (623)
                      +|||+.....+...+.+ +.+.+.|+|++||+.+ +..+|++++.+.++
T Consensus       161 ~~LD~~~~~~l~~~l~~-~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~  208 (213)
T cd03235         161 AGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLEYFDRVLLLNRT  208 (213)
T ss_pred             ccCCHHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence            99999999999995554 5556889999999987 56789999888775

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.93  E-value=2.8e-26  Score=219.43  Aligned_cols=150  Identities=21%  Similarity=0.231  Sum_probs=118.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH--------HH
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW--------FD  396 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~--------~d  396 (623)
                      ++++|++++|++.++  +++|++.+| ++++|+||||+||||||+++        .|...|..|...+..        .+
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i--------~G~~~~~~G~v~~~g~~~~~~~~~~   71 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRG-EVHALLGENGAGKSTLMKIL--------SGLYKPDSGEILVDGKEVSFASPRD   71 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCCeEEEECCEECCcCCHHH
Confidence            357899999987666  999999999 99999999999999999999        665555554222111        11


Q ss_pred             HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       397 ~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .....++       .+..||+||+ |++++++++.+|+++||||||+|||+.....+... +..+.+++.|+|++||+.+
T Consensus        72 ~~~~~i~-------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sh~~~  143 (163)
T cd03216          72 ARRAGIA-------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV-IRRLRAQGVAVIFISHRLD  143 (163)
T ss_pred             HHhcCeE-------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHH
Confidence            1111111       1223999999 89999999999999999999999999999999995 4455666889999999987


Q ss_pred             -HHhhccccceeeCceEEE
Q 006974          476 -LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       476 -l~~~~~~~~~i~~g~~~~  493 (623)
                       +..+|++.+.+.+|++.+
T Consensus       144 ~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         144 EVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHHhCCEEEEEECCEEEe
Confidence             678899999999998753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=2.6e-26  Score=226.28  Aligned_cols=159  Identities=23%  Similarity=0.338  Sum_probs=134.3

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--------------  389 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~--------------  389 (623)
                      .+++++|+++||+-.+  ++||++.+| ++++|+|||||||||++++|        .|.|.|..|.              
T Consensus         4 lL~v~~l~k~FGGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNli--------tG~~~P~~G~v~~~G~~it~l~p~   74 (250)
T COG0411           4 LLEVRGLSKRFGGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLI--------TGFYKPSSGTVIFRGRDITGLPPH   74 (250)
T ss_pred             eeeeccceeecCCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeee--------cccccCCCceEEECCcccCCCCHH
Confidence            3678999999998665  999999999 99999999999999999999        5555555441              


Q ss_pred             -----------------CCccHHHH---------------------------------HHHHcCCchhhhcccccccHHH
Q 006974          390 -----------------PRLPWFDL---------------------------------ILADIGDHQSLEQNLSTFSGHI  419 (623)
Q Consensus       390 -----------------~~l~~~d~---------------------------------i~~~ig~~~~~~~~~stfS~g~  419 (623)
                                       ..++++++                                 ++..+|+.+..+...++||+|+
T Consensus        75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~  154 (250)
T COG0411          75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ  154 (250)
T ss_pred             HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence                             12223332                                 3556788889999999999998


Q ss_pred             H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      + ++.++++++++|+|||||||.+|++|.+...+.. ++..+++ .|.|++++.||++ +..+||+++++..|++..+
T Consensus       155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe  231 (250)
T COG0411         155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE  231 (250)
T ss_pred             hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence            8 6889999999999999999999999999999999 6666776 4689999999999 6789999999999987655

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.93  E-value=6.9e-26  Score=240.80  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=136.2

Q ss_pred             cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      +++++||++.|++    ..+  ++||++.+| ++++|+||||||||||||+| |+..+.                     
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~   79 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK   79 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            3689999999952    234  999999999 99999999999999999999 665431                     


Q ss_pred             -hhhceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          378 -SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       378 -a~~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                       .+...|+|+....  ..+++                     ..++..+|+.+..++.+++|||||+ |+++|++++.+|
T Consensus        80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence             1123577776421  11221                     2346678888888999999999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++|+||||++|||.....+.. ++..+.+ .|.|+|++||+++ +..+||++..+.+|++...
T Consensus       160 ~iLLlDEPts~LD~~t~~~i~~-lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~  222 (343)
T TIGR02314       160 KVLLCDEATSALDPATTQSILE-LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ  222 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999 5556655 4899999999998 5689999999999998754

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.93  E-value=7.6e-26  Score=227.01  Aligned_cols=166  Identities=19%  Similarity=0.222  Sum_probs=134.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------hhceeecCCC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPAKN  388 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---------------~~G~~vp~~~  388 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||+||||||+++ |++.+..               +...|+|+..
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~   79 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP   79 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence            357899999987665  999999999 99999999999999999999 7654321               1223666653


Q ss_pred             CC--CccHH-----------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          389 HP--RLPWF-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       389 ~~--~l~~~-----------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                      ..  .++..                 ..++..+|+.+..++.+..||+|++ |++++++++.+|+++||||||+|+|+..
T Consensus        80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~  159 (223)
T TIGR03740        80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG  159 (223)
T ss_pred             CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence            11  12222                 2345667888888899999999999 7999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          449 GVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       449 ~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ...+... +..+.+.+.++|++||+.+ +..+|+++..+.+|++...
T Consensus       160 ~~~l~~~-L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~  205 (223)
T TIGR03740       160 IQELREL-IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ  205 (223)
T ss_pred             HHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence            9999994 4456666889999999988 4579999999999988654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=8.7e-26  Score=233.81  Aligned_cols=167  Identities=16%  Similarity=0.115  Sum_probs=135.9

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      .++++||++.|+ +..+  ++||++.+| ++++|+||||||||||++++ |++.+.                   .+...
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   82 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG   82 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence            478999999995 4444  999999999 99999999999999999999 776431                   11234


Q ss_pred             eecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      |+|+...   ...++                     ++.++..+|+.+..++.+.+|||||+ |+.++++++.+|+++||
T Consensus        83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll  162 (274)
T PRK13647         83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL  162 (274)
T ss_pred             EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            7777631   11111                     22345667888888999999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+.....+.. ++..++++|.|+|++||+++. ..+|+++..+.+|++..+
T Consensus       163 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~  219 (274)
T PRK13647        163 DEPMAYLDPRGQETLME-ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE  219 (274)
T ss_pred             ECCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999 555566568899999999984 579999999999998765

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.93  E-value=1.7e-25  Score=225.02  Aligned_cols=165  Identities=17%  Similarity=0.194  Sum_probs=131.3

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-----hhh---------------------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-----~~~---------------------  377 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||+|+| |+.     .+.                     
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence            367899999987655  999999999 99999999999999999999 877     421                     


Q ss_pred             hhhceeecCCCCC-CccHH----------------------HHHHHHcCCchhhhcc--cccccHHHH-HHHHHHHhcCC
Q 006974          378 SKAGLYLPAKNHP-RLPWF----------------------DLILADIGDHQSLEQN--LSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       378 a~~G~~vp~~~~~-~l~~~----------------------d~i~~~ig~~~~~~~~--~stfS~g~~-rl~~~~~l~~~  431 (623)
                      .+...|+|+.... .+++.                      ..++..+|+.+..++.  +++|||||+ |++++++++.+
T Consensus        80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (227)
T cd03260          80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE  159 (227)
T ss_pred             HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence            0112467776411 11111                      2345566776666666  499999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|||+.....+... +..+.+. .|+|++||+.+ +..+|+++..+.+|++...
T Consensus       160 p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  221 (227)
T cd03260         160 PEVLLLDEPTSALDPISTAKIEEL-IAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF  221 (227)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHH-HHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence            999999999999999999999994 4455655 89999999988 5679999999999988654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.5e-25  Score=233.50  Aligned_cols=166  Identities=15%  Similarity=0.165  Sum_probs=134.2

Q ss_pred             EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      ++++||++.|++     ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                     
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            678999999974     234  999999999 99999999999999999999 665421                     


Q ss_pred             hhhceeecCCCC---CCccH---------------------HHHHHHHcCCc--hhhhcccccccHHHH-HHHHHHHhcC
Q 006974          378 SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       378 a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~--~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      .+...|+|+...   ...++                     ++.++..+|+.  +..++.++.|||||+ |++++++++.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            112357888631   11122                     12346667876  567889999999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+++. ..+|+++..+.+|++..+
T Consensus       162 ~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~  226 (287)
T PRK13637        162 EPKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ  226 (287)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999 4555554 48899999999884 579999999999998765

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=9.3e-26  Score=229.03  Aligned_cols=167  Identities=20%  Similarity=0.266  Sum_probs=135.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      .++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.                    .+...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG   81 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence            3678999999987655  999999999 99999999999999999999 665421                    11234


Q ss_pred             eecCCCCC--CccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          383 YLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       383 ~vp~~~~~--~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      |+|+....  .+++                      ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||
T Consensus        82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (241)
T PRK10895         82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL  161 (241)
T ss_pred             EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            67766411  1122                      22345566777777888999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|+|+.....+.. ++..+.+++.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       162 DEPt~~LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~  218 (241)
T PRK10895        162 DEPFAGVDPISVIDIKR-IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH  218 (241)
T ss_pred             cCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence            99999999999999988 55566767889999999986 7789999999999998654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.93  E-value=8e-26  Score=212.52  Aligned_cols=160  Identities=21%  Similarity=0.306  Sum_probs=136.2

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-----------------
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-----------------  389 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-----------------  389 (623)
                      +.+++|.++|+..+..+|+.++.| ++++|+||+||||||||+.|        .|+..|+.|.                 
T Consensus         2 l~L~~V~~~y~~~~~~fdl~v~~g-e~vAi~GpSGaGKSTLLnLI--------AGF~~P~~G~i~i~g~d~t~~~P~~RP   72 (231)
T COG3840           2 LALDDVRFSYGHLPMRFDLTVPAG-EIVAILGPSGAGKSTLLNLI--------AGFETPASGEILINGVDHTASPPAERP   72 (231)
T ss_pred             ccccceEEeeCcceEEEEEeecCC-cEEEEECCCCccHHHHHHHH--------HhccCCCCceEEEcCeecCcCCcccCC
Confidence            456789999998777899999999 99999999999999999999        5555555541                 


Q ss_pred             -----------CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          390 -----------PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       390 -----------~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                                 +.+.+                     ++.+..++|+.+..++.+.+||||++ |+++++.++.+..++|
T Consensus        73 VSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL  152 (231)
T COG3840          73 VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL  152 (231)
T ss_pred             hhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE
Confidence                       11111                     44678899999999999999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~  495 (623)
                      ||||++.|||.-+......+..--.+++.|++++||..+ ...++++.+.+.+|++.+..
T Consensus       153 LDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g  212 (231)
T COG3840         153 LDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG  212 (231)
T ss_pred             ecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence            999999999999999988555444466889999999976 78899999999999998764

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.5e-25  Score=220.81  Aligned_cols=168  Identities=18%  Similarity=0.185  Sum_probs=138.5

Q ss_pred             cEEEceeeeecCCcc----c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------h
Q 006974          326 EMTVGSLSKGISDFP----V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------S  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~----v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a  378 (623)
                      .++++|+++.|+...    +  ++||++.+| ++++|+|++|||||||.+++ |+..+.                    .
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~   81 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY   81 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence            578999999998655    4  999999999 99999999999999999999 776531                    1


Q ss_pred             hhceeecCCCCCCccH-----------------------HHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          379 KAGLYLPAKNHPRLPW-----------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       379 ~~G~~vp~~~~~~l~~-----------------------~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      +...+|+|++...+.+                       ..+++..+|+.. .+++.+..||||++ |+++|++++.+|+
T Consensus        82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk  161 (252)
T COG1124          82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK  161 (252)
T ss_pred             cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence            2234667765433322                       245677888765 56889999999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++|+||||+.||+.-.+.+...+.+.-++.+.|.||+|||.. +..+||++.++.+|+++..
T Consensus       162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~  223 (252)
T COG1124         162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI  223 (252)
T ss_pred             EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence            999999999999999999999555544456889999999998 5679999999999998755

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=9e-26  Score=242.84  Aligned_cols=168  Identities=20%  Similarity=0.235  Sum_probs=136.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      .++++|++++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                 .+...|+|
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~   81 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF   81 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence            3789999999987655  999999999 99999999999999999999 776431                 11234777


Q ss_pred             CCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      ++..  ..+++.                     +.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||
T Consensus        82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt  161 (369)
T PRK11000         82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (369)
T ss_pred             CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            7641  112222                     2345677888888999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+..+..+...+.+...+.+.|+|++||+.+ +..+||++..+.+|++...
T Consensus       162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~  215 (369)
T PRK11000        162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV  215 (369)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999555443445889999999987 6679999999999998654

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=240.91  Aligned_cols=168  Identities=18%  Similarity=0.210  Sum_probs=137.3

Q ss_pred             cEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceee
Q 006974          326 EMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL  384 (623)
Q Consensus       326 ~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~v  384 (623)
                      .++++||++.| ++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                 .+...|+
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   81 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV   81 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            47899999999 66555  899999999 99999999999999999999 765431                 1123477


Q ss_pred             cCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974          385 PAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI  440 (623)
Q Consensus       385 p~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp  440 (623)
                      |++..  ..+++                     ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||
T Consensus        82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP  161 (356)
T PRK11650         82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP  161 (356)
T ss_pred             eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            77641  11222                     23456677888889999999999999 89999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~  216 (356)
T PRK11650        162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI  216 (356)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE
Confidence            99999999999999555433445899999999986 6689999999999998654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=9.4e-26  Score=228.45  Aligned_cols=167  Identities=20%  Similarity=0.223  Sum_probs=132.8

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.                    .+...
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (237)
T PRK11614          5 MLSFDKVSAHYGKIQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA   83 (237)
T ss_pred             EEEEEeEEEeeCCceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence            5789999999987655  999999999 99999999999999999999 665421                    11234


Q ss_pred             eecCCCCC--CccHHHH-------------------HHHHc-CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          383 YLPAKNHP--RLPWFDL-------------------ILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       383 ~vp~~~~~--~l~~~d~-------------------i~~~i-g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      |+|+....  .+++.++                   ++..+ ++.+..+..+++||+||+ |+.++++++.+|+++||||
T Consensus        84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE  163 (237)
T PRK11614         84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE  163 (237)
T ss_pred             EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            66765421  1122222                   23334 345556778999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+|+|+.....+... +..+.+++.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       164 Pt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  218 (237)
T PRK11614        164 PSLGLAPIIIQQIFDT-IEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE  218 (237)
T ss_pred             ccccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence            9999999999999994 5556666899999999987 7789999999999988654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=233.98  Aligned_cols=166  Identities=16%  Similarity=0.168  Sum_probs=135.3

Q ss_pred             EEEceeeeecCCc------cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          327 MTVGSLSKGISDF------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~------~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      ++++||++.|++.      .+ ++||++.+| ++++|+||||||||||+|+| |++.+.                     
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            6889999999742      23 999999999 99999999999999999999 765421                     


Q ss_pred             ----------------------hhhceeecCCCCCCc---cH---------------------HHHHHHHcCCc-hhhhc
Q 006974          378 ----------------------SKAGLYLPAKNHPRL---PW---------------------FDLILADIGDH-QSLEQ  410 (623)
Q Consensus       378 ----------------------a~~G~~vp~~~~~~l---~~---------------------~d~i~~~ig~~-~~~~~  410 (623)
                                            .+...|+|+.....+   .+                     +..++..+|+. +..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                                  011247777531111   11                     23456677885 67899


Q ss_pred             ccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          411 NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       411 ~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      .+.+|||||+ |+++|++++.+|+++||||||+|||+.....+.. ++..+++.|.|+|++||+++ +..+||+++.+.+
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~  240 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE-IFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD  240 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence            9999999999 7999999999999999999999999999999998 55667777899999999987 6789999999999


Q ss_pred             ceEEEe
Q 006974          489 AATEFS  494 (623)
Q Consensus       489 g~~~~~  494 (623)
                      |++..+
T Consensus       241 G~i~~~  246 (305)
T PRK13651        241 GKIIKD  246 (305)
T ss_pred             CEEEEE
Confidence            998765

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.4e-25  Score=232.20  Aligned_cols=166  Identities=20%  Similarity=0.193  Sum_probs=134.1

Q ss_pred             EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      ++++||++.|+ +..+  ++||++.+| ++++|+||||||||||||++ |+..+.                    .+...
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence            67899999995 3434  999999999 99999999999999999999 765421                    11234


Q ss_pred             eecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      |+|+...   ...++                     +..++..+|+....++.+..||+||+ |+.++++++.+|+++||
T Consensus        81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL  160 (274)
T PRK13644         81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF  160 (274)
T ss_pred             EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            6776531   11122                     12345667888888899999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+.....+.. ++..+++.|.|+|++||+.+....|+++..+.+|++...
T Consensus       161 DEPt~gLD~~~~~~l~~-~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~  216 (274)
T PRK13644        161 DEVTSMLDPDSGIAVLE-RIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLE  216 (274)
T ss_pred             eCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEE
Confidence            99999999999999999 455566668999999999986577999999999998765

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.5e-25  Score=226.46  Aligned_cols=167  Identities=20%  Similarity=0.233  Sum_probs=132.0

Q ss_pred             cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      +++++||++.|++    ..+  ++||++.+| ++++|+||||||||||||++ |+..+.                     
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   83 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE   83 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence            5789999999964    234  999999999 99999999999999999999 775420                     


Q ss_pred             --hhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          378 --SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       378 --a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                        .+...|+|+...  ..++.                     +.+++..+|+.+..++.+.+||+||+ |++++++++.+
T Consensus        84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~  163 (233)
T PRK11629         84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN  163 (233)
T ss_pred             HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence              012347777641  11121                     12345677887778889999999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|||+.....+.. ++..+++ .|.|+|++||+.+....+++++.+.+|++...
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~  226 (233)
T PRK11629        164 PRLVLADEPTGNLDARNADSIFQ-LLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE  226 (233)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence            99999999999999999999999 4555554 58899999999985555567788888887643

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.5e-25  Score=229.62  Aligned_cols=167  Identities=17%  Similarity=0.219  Sum_probs=134.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      +++++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   .+...|
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            3678999999987665  999999999 99999999999999999999 765421                   112346


Q ss_pred             ecCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          384 LPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       384 vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      +|+....  .++.                         +..++..+|+....++.+++||+||+ |++++++++.+|+++
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  160 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV  160 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            7775421  1111                         12234556777777899999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 llDEP~~~LD~~~~~~l~~~l-~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  219 (255)
T PRK11231        161 LLDEPTTYLDINHQVELMRLM-RELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ  219 (255)
T ss_pred             EEcCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence            999999999999999999954 456666889999999988 5789999999999988654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.93  E-value=2.4e-25  Score=228.26  Aligned_cols=168  Identities=18%  Similarity=0.191  Sum_probs=135.1

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------  377 (623)
                      +.++++||++.|++..+  +++|++.+| ++++|+||||+||||||+++ |++.+.                        
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   82 (257)
T PRK10619          4 NKLNVIDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA   82 (257)
T ss_pred             ccEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence            46899999999987655  999999999 99999999999999999999 665421                        


Q ss_pred             --------hhhceeecCCCCC--CccHHH----------------------HHHHHcCCchhh-hcccccccHHHH-HHH
Q 006974          378 --------SKAGLYLPAKNHP--RLPWFD----------------------LILADIGDHQSL-EQNLSTFSGHIS-RIV  423 (623)
Q Consensus       378 --------a~~G~~vp~~~~~--~l~~~d----------------------~i~~~ig~~~~~-~~~~stfS~g~~-rl~  423 (623)
                              .+.-.|+|+....  .++..+                      .++..+|+.... ++.+++||+||+ |++
T Consensus        83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~  162 (257)
T PRK10619         83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS  162 (257)
T ss_pred             cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                    0112466765421  112222                      234566776654 788999999999 899


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|+++..+.+|++...
T Consensus       163 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  233 (257)
T PRK10619        163 IARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  233 (257)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999 55566667899999999988 5568999999999988754

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.93  E-value=6.9e-26  Score=227.72  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=128.0

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hce--eecCCC---CCCccH
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AGL--YLPAKN---HPRLPW  394 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G~--~vp~~~---~~~l~~  394 (623)
                      +.++++++.|++..+  ++||++.+| ++++|+||||||||||+|++ |++.+..-    .|.  +.+...   ...+++
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv  101 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTG  101 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcH
Confidence            567889999998776  999999999 99999999999999999999 66543210    000  000000   001111


Q ss_pred             ---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHH
Q 006974          395 ---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL  452 (623)
Q Consensus       395 ---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l  452 (623)
                                           +..++..+|+.+..++.++.||+|++ |++++++++.+|+++||||||+|||+.....+
T Consensus       102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~  181 (224)
T cd03220         102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC  181 (224)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence                                 12344556777778889999999999 79999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          453 ATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       453 ~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ...+.+ +.+.+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus       182 ~~~l~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  222 (224)
T cd03220         182 QRRLRE-LLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF  222 (224)
T ss_pred             HHHHHH-HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            995554 5555789999999987 567899999999998754

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.93  E-value=1.8e-25  Score=224.74  Aligned_cols=166  Identities=17%  Similarity=0.171  Sum_probs=130.2

Q ss_pred             EEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      ++++||++.|++.    .+  ++||++.+| ++++|+|||||||||||+++ |+..+.                      
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            6789999999764    44  999999999 99999999999999999999 665421                      


Q ss_pred             hhhceeecCCCC----CCccHHH-----------------------HHHHHcCCc-hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 a~~G~~vp~~~~----~~l~~~d-----------------------~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                      .+...|+|+...    ..+++.+                       .++..+++. ...++.+.+||+||+ |+++++++
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence            012346676641    0112111                       234556764 467888999999999 79999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      +.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  226 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE  226 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence            99999999999999999999999999555443334789999999988 456899999999998753

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.93  E-value=1.3e-25  Score=226.24  Aligned_cols=166  Identities=25%  Similarity=0.261  Sum_probs=131.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~  383 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                    .+...|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            367899999987655  999999999 99999999999999999999 776431                    112347


Q ss_pred             ecCCCCC--CccHH------------------HHHHHHcC-CchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          384 LPAKNHP--RLPWF------------------DLILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       384 vp~~~~~--~l~~~------------------d~i~~~ig-~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +|+....  .+++.                  +.++..++ ..+..++.+++||+||+ |++++++++.+|+++||||||
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt  159 (230)
T TIGR03410        80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT  159 (230)
T ss_pred             eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            7776421  11222                  22333443 35567889999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       160 ~~LD~~~~~~l~~~l~-~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~  213 (230)
T TIGR03410       160 EGIQPSIIKDIGRVIR-RLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS  213 (230)
T ss_pred             ccCCHHHHHHHHHHHH-HHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999555 4554 4789999999988 5568999999999988654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.8e-25  Score=225.68  Aligned_cols=166  Identities=16%  Similarity=0.162  Sum_probs=134.3

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------h
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------S  378 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------a  378 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+-                         .
T Consensus         3 l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   81 (242)
T PRK11124          3 IQLNGINCFYGAHQALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR   81 (242)
T ss_pred             EEEEeeEEEECCeeeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence            678999999987655  999999999 99999999999999999999 665321                         0


Q ss_pred             hhceeecCCCCC--CccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          379 KAGLYLPAKNHP--RLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       379 ~~G~~vp~~~~~--~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      +...|+|+....  .+++.                      ..++..+|+...+++.+..||+||+ |++++++++.+|+
T Consensus        82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~  161 (242)
T PRK11124         82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            123467765421  11222                      2234566777778889999999999 7999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|+|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       162 llilDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~  222 (242)
T PRK11124        162 VLLFDEPTAALDPEITAQIVS-IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             EEEEcCCCCcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            999999999999999999999 55566666889999999988 4578999999999998754

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.93  E-value=1.5e-25  Score=227.63  Aligned_cols=166  Identities=20%  Similarity=0.216  Sum_probs=132.5

Q ss_pred             EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      ++++||+++|++ ..+  ++||++.+| ++++|+||||||||||||++ |+..+.                   .....|
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence            357899999987 554  999999999 99999999999999999999 665421                   112246


Q ss_pred             ecCCCCC--CccH---------------------HHHHHHHcCCch--hhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          384 LPAKNHP--RLPW---------------------FDLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       384 vp~~~~~--~l~~---------------------~d~i~~~ig~~~--~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      +|+....  .+++                     +..++..+|+..  ..++.+++||+||+ |++++++++.+|+++||
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  159 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM  159 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            7776411  1122                     123456677764  67889999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|+|+.....+... +..+.+ .+.++|++||+.+ +..+|+++..+.+|++...
T Consensus       160 DEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~  217 (242)
T cd03295         160 DEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV  217 (242)
T ss_pred             cCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999994 445554 4889999999987 6789999999999998654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.93  E-value=1.9e-25  Score=229.26  Aligned_cols=167  Identities=19%  Similarity=0.197  Sum_probs=134.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+|||||||||||++| |+..+.                   .+...|
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV   80 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence            4788999999987655  999999999 99999999999999999999 775431                   112346


Q ss_pred             ecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc------CCCc
Q 006974          384 LPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV------SRES  433 (623)
Q Consensus       384 vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~------~~~~  433 (623)
                      +|+....  .+++                     +..++..+|+.+..++.+.+||+||+ |++++++++      .+|+
T Consensus        81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~  160 (258)
T PRK13548         81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR  160 (258)
T ss_pred             EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            7765421  1122                     22345667777778899999999999 799999998      5999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|||+.....+...+.+ +. +.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  222 (258)
T PRK13548        161 WLLLDEPTSALDLAHQHHVLRLARQ-LAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD  222 (258)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence            9999999999999999999995554 55 66889999999988 5579999999999988654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.93  E-value=1.6e-25  Score=222.75  Aligned_cols=163  Identities=21%  Similarity=0.327  Sum_probs=130.9

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp  385 (623)
                      ++++|+++.|++..+  ++||++.+|  +++|+||||||||||||++ |++.+.                  .+...|+|
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence            367899999987655  999999997  8999999999999999999 765421                  12234677


Q ss_pred             CCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +....  .+++.                     +.++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt  158 (211)
T cd03264          79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT  158 (211)
T ss_pred             CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            76421  11221                     2345567777778889999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      +|+|+.....+.. ++..+++ +.|+|++||+.+ +..+|++++.+.+|++..
T Consensus       159 ~~LD~~~~~~l~~-~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~  209 (211)
T cd03264         159 AGLDPEERIRFRN-LLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVF  209 (211)
T ss_pred             ccCCHHHHHHHHH-HHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999998 5556665 489999999988 457899999999998753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.93  E-value=3.3e-25  Score=225.06  Aligned_cols=166  Identities=22%  Similarity=0.205  Sum_probs=133.0

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~  382 (623)
                      .++++|+++.|++..+  ++||++.+| ++++|+||||+|||||||++ |+..+.                   . +.-.
T Consensus         2 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (242)
T TIGR03411         2 ILYLEGLSVSFDGFKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG   80 (242)
T ss_pred             eEEEEeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence            4688999999987655  999999999 99999999999999999999 665421                   0 1123


Q ss_pred             eecCCCC--CCccH-----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          383 YLPAKNH--PRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       383 ~vp~~~~--~~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      |+|+...  ..+++                             +..++..+|+.+..++.+++||+||+ |+.++++++.
T Consensus        81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~  160 (242)
T TIGR03411        81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ  160 (242)
T ss_pred             EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            5666531  01111                             12345667777778899999999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       161 ~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~  223 (242)
T TIGR03411       161 DPKLLLLDEPVAGMTDEETEKTAEL-LKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE  223 (242)
T ss_pred             CCCEEEecCCccCCCHHHHHHHHHH-HHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence            9999999999999999999999994 445555 689999999988 5579999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.4e-25  Score=239.82  Aligned_cols=168  Identities=21%  Similarity=0.240  Sum_probs=138.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      .++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+-                 .+...|+|
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~   82 (353)
T TIGR03265         4 YLSIDNIRKRFGAFTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF   82 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            4789999999988665  899999999 99999999999999999999 776431                 12235777


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      ++..  ..+++                     ++.++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||||+
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~  162 (353)
T TIGR03265        83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL  162 (353)
T ss_pred             CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            7641  11222                     23456677888888999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||+..+..+...+.+...+.+.|+|++||+.+ ...+||++..+.+|++...
T Consensus       163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~  216 (353)
T TIGR03265       163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV  216 (353)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999665544455899999999987 5689999999999998754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.5e-25  Score=226.07  Aligned_cols=166  Identities=17%  Similarity=0.202  Sum_probs=133.8

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      .++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |+..+.                   .+...|
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   81 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM   81 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence            4789999999987655  999999999 99999999999999999999 665421                   112346


Q ss_pred             ecCCCCCCc--cH-----------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          384 LPAKNHPRL--PW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       384 vp~~~~~~l--~~-----------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      +|+... .+  ++                 ...++..+|+. +..++.+..||+||+ |++++++++.+|+++||||||+
T Consensus        82 ~~q~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  160 (241)
T PRK14250         82 VFQQPH-LFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS  160 (241)
T ss_pred             EecCch-hchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            677631 11  11                 23456677885 467889999999999 7999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||+.....+... +..+.+ .|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 ~LD~~~~~~l~~~-l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  213 (241)
T PRK14250        161 ALDPTSTEIIEEL-IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY  213 (241)
T ss_pred             cCCHHHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence            9999999999984 445554 4889999999988 5679999999999988654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.1e-25  Score=232.46  Aligned_cols=166  Identities=15%  Similarity=0.122  Sum_probs=134.1

Q ss_pred             EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      ++++||++.|++     +.+  ++||++.+| ++++|+||||||||||||+| |++.+.                     
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            678999999974     234  999999999 99999999999999999999 665421                     


Q ss_pred             --hhhceeecCCCC---CCccHH---------------------HHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974          378 --SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       378 --a~~G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                        .+...|+|+...   ...++.                     ..++..+|+. +..++.+++||+||+ |++++++++
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~  161 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA  161 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence              012347777631   111222                     2345567776 567899999999999 799999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+++ +..+||+++.+.+|++...
T Consensus       162 ~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~  226 (287)
T PRK13641        162 YEPEILCLDEPAAGLDPEGRKEMMQ-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH  226 (287)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999998 55666666889999999988 5689999999999998754

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3.1e-25  Score=231.46  Aligned_cols=166  Identities=16%  Similarity=0.149  Sum_probs=133.6

Q ss_pred             EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      ++++||+++|++     ..+  ++||++.+| ++++|+||||||||||+|++ |++.+.                     
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            678999999974     234  999999999 99999999999999999999 665421                     


Q ss_pred             --hhhceeecCCCCC---CccH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974          378 --SKAGLYLPAKNHP---RLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       378 --a~~G~~vp~~~~~---~l~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                        .+...|+|+....   ..++                     ++.++..+|+. +..++.+++||+||+ |++++++++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              0123477776311   1111                     22345677886 556889999999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+... +..+.+ .|.|||++||+.+ +..+||++..+.+|++..+
T Consensus       162 ~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~  227 (290)
T PRK13634        162 MEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ  227 (290)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999994 555654 5889999999988 5679999999999998765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.93  E-value=3.8e-25  Score=225.42  Aligned_cols=165  Identities=19%  Similarity=0.260  Sum_probs=131.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----h--------------------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----S--------------------  378 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----a--------------------  378 (623)
                      ++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.     +                    
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~   80 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL   80 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence            678999999987555  999999999 99999999999999999999 776432     1                    


Q ss_pred             -hhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHhc
Q 006974          379 -KAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       379 -~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                       +...|+|+.... ..+..+                      .++..+|+.    +..++.+.+||+||+ |++++++++
T Consensus        81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  160 (247)
T TIGR00972        81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA  160 (247)
T ss_pred             HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence             112466665310 012222                      234455666    667888999999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  224 (247)
T TIGR00972       161 VEPEVLLLDEPTSALDPIATGKIEE-LIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEY  224 (247)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999 4555555 389999999988 6689999999999998654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.93  E-value=4.1e-25  Score=227.17  Aligned_cols=167  Identities=20%  Similarity=0.260  Sum_probs=135.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------  378 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||+++| |+..+..                        
T Consensus         4 ~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (262)
T PRK09984          4 IIRVEKLAKTFNQHQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR   82 (262)
T ss_pred             EEEEeeEEEEeCCeEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence            5789999999987665  999999999 99999999999999999999 7764320                        


Q ss_pred             ---hhceeecCCCC--CCccH-----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHH
Q 006974          379 ---KAGLYLPAKNH--PRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       379 ---~~G~~vp~~~~--~~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~  423 (623)
                         +...|+|+...  ..+++                             +..++..+|+.+..++.+.+||+||+ |++
T Consensus        83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  162 (262)
T PRK09984         83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA  162 (262)
T ss_pred             HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence               11246776531  11111                             12345567777778899999999999 899


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++++.+|++|||||||+|||+.....+...+. .+. +.|.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus       163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~  234 (262)
T PRK09984        163 IARALMQQAKVILADEPIASLDPESARIVMDTLR-DINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD  234 (262)
T ss_pred             HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999544 455 45789999999998 5789999999999988654

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.93  E-value=2.4e-25  Score=221.90  Aligned_cols=166  Identities=18%  Similarity=0.225  Sum_probs=132.7

Q ss_pred             EEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCCCC
Q 006974          328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH  389 (623)
Q Consensus       328 ~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~~~  389 (623)
                      +++||+++|+....++||++.+| ++++|+||||||||||+|++ |++.+.                 .+...|+|+...
T Consensus         2 ~~~~l~~~~~~~~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~   80 (213)
T TIGR01277         2 ALDKVRYEYEHLPMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN   80 (213)
T ss_pred             eEEeeeEEeCCcceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence            57899999986445999999999 99999999999999999999 766431                 112346777641


Q ss_pred             C--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974          390 P--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD  445 (623)
Q Consensus       390 ~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD  445 (623)
                      .  .+++                     +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus        81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD  160 (213)
T TIGR01277        81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD  160 (213)
T ss_pred             cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence            1  1111                     12345667777778899999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~  210 (213)
T TIGR01277       161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV  210 (213)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence            999999999555433344789999999988 5678999999999987654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.5e-25  Score=230.99  Aligned_cols=167  Identities=19%  Similarity=0.201  Sum_probs=135.0

Q ss_pred             cEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          326 EMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      .++++||++.|++   ..+  ++||++.+| ++++|+||||||||||+|++ |++.+.                   .+.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK   82 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence            4789999999963   223  999999999 99999999999999999999 765421                   112


Q ss_pred             ceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ..|+|+...   ...++                     ++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL  162 (279)
T PRK13650         83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKII  162 (279)
T ss_pred             ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            347777531   11121                     23456677888888999999999998 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+....|++++.+.+|++..+
T Consensus       163 lLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~  221 (279)
T PRK13650        163 ILDEATSMLDPEGRLELIK-TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVEST  221 (279)
T ss_pred             EEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999998 4555554 48899999999885578999999999998765

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.6e-25  Score=229.10  Aligned_cols=168  Identities=15%  Similarity=0.176  Sum_probs=135.4

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      .+++++||++.|++..+  ++||++.+| ++++|+||||||||||+|++ |+..+.                   .+...
T Consensus        10 ~~l~i~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   88 (265)
T PRK10575         10 TTFALRNVSFRVPGRTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA   88 (265)
T ss_pred             ceEEEeeEEEEECCEEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence            36899999999987655  999999999 99999999999999999999 775421                   11234


Q ss_pred             eecCCCC--CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+...  ..+++                         ++.++..+|+.+.+++.+.+|||||+ |++++++++.+|++
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  168 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC  168 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            6776531  11111                         22345667777778889999999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||||+|||+.....+... +..+.+ .+.++|++||+.+ +..+|++++.+.+|++...
T Consensus       169 llLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~  229 (265)
T PRK10575        169 LLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ  229 (265)
T ss_pred             EEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence            999999999999999999994 445554 4889999999988 5689999999999998644

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.1e-25  Score=238.09  Aligned_cols=169  Identities=15%  Similarity=0.158  Sum_probs=137.7

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceee
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYL  384 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~v  384 (623)
                      ..++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+-+                 +...|+
T Consensus         5 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   83 (351)
T PRK11432          5 NFVVLKNITKRFGSNTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV   83 (351)
T ss_pred             cEEEEEeEEEEECCeEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            36889999999987664  899999999 99999999999999999999 7765321                 122467


Q ss_pred             cCCCC--CCccHHH---------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974          385 PAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI  440 (623)
Q Consensus       385 p~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp  440 (623)
                      |++..  ..+++.+                     .++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus        84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP  163 (351)
T PRK11432         84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP  163 (351)
T ss_pred             eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            77641  1222222                     345667787788899999999999 89999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++|||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus       164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~  218 (351)
T PRK11432        164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI  218 (351)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999555443445889999999987 5689999999999998754

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.6e-25  Score=234.09  Aligned_cols=167  Identities=19%  Similarity=0.262  Sum_probs=138.3

Q ss_pred             cEEEceeeeecCCc-cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDF-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~-~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      .++++||+|.||+. .+ ++|+++..| ++++|+||||||||||||+| ||..+-                 .+...+|+
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF   81 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF   81 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence            47899999999987 56 999999999 99999999999999999999 776542                 12234677


Q ss_pred             CCC--CCCccHHHH---------------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKN--HPRLPWFDL---------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~--~~~l~~~d~---------------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      |+.  ++.++++++                     +...+++.+.+++.++.||||++ |++++++++.+|+++|||||.
T Consensus        82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl  161 (338)
T COG3839          82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL  161 (338)
T ss_pred             CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence            764  234444443                     35567889999999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ++||..-+..+..-+.+...+.+.|+|.+|||.. ...++|++.++.+|.+.-
T Consensus       162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q  214 (338)
T COG3839         162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ  214 (338)
T ss_pred             hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence            9999999999988555533445889999999964 667999999999888753

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.6e-25  Score=231.89  Aligned_cols=167  Identities=17%  Similarity=0.145  Sum_probs=134.3

Q ss_pred             cEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974          326 EMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------  377 (623)
                      +++++||++.|+..     .+  ++||++.+| ++++|+||||||||||+|++ |++.+.                    
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   79 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI   79 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence            36789999999632     23  999999999 99999999999999999999 765431                    


Q ss_pred             ---hhhceeecCCCC---CCccH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 ---SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 ---a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                         .+...|+|+...   ...++                     +..++..+|+. +..++.+.+||+||+ |+++++++
T Consensus        80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence               112347777531   01111                     22345666775 466899999999999 79999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+..+..+.. ++..+++.|.|+|++||+++ +..+|+++..+.+|++.++
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~  225 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQ-LFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC  225 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999998 56667767889999999988 5579999999999999865

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.93  E-value=4.5e-25  Score=225.56  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=132.8

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------------  377 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+-                          
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence            367899999987555  999999999 99999999999999999999 665421                          


Q ss_pred             ------hhhceeecCCCCC--CccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHH
Q 006974          378 ------SKAGLYLPAKNHP--RLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 ------a~~G~~vp~~~~~--~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~  426 (623)
                            .+...|+|+....  ..++                      +..++..+|+.+..++.+++||+|++ |+++++
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence                  1123466665311  1111                      12345566777778889999999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T TIGR03005       160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ  228 (252)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            9999999999999999999999999999555443344889999999988 5579999999999998654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3.3e-25  Score=230.04  Aligned_cols=167  Identities=19%  Similarity=0.156  Sum_probs=135.3

Q ss_pred             cEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      .++++||++.|++  ..+  ++||++.+| ++++|+||||+||||||++| |++.+.                   .+..
T Consensus         5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          5 IIRVEHISFRYPDAATYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             eEEEEEEEEEeCCCCccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            5789999999974  334  999999999 99999999999999999999 665431                   1123


Q ss_pred             eeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      .|+|+...   ...++                     ++.++..+|+.+.+++.+.+||+||+ |+.++++++.+|++||
T Consensus        84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  163 (279)
T PRK13635         84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII  163 (279)
T ss_pred             EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            46776531   11122                     23456667888889999999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|||+.....+.. ++..+.+. +.|+|++||+++....|+++..+.+|++..+
T Consensus       164 LDEPt~gLD~~~~~~l~~-~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~  221 (279)
T PRK13635        164 LDEATSMLDPRGRREVLE-TVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEE  221 (279)
T ss_pred             EeCCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence            999999999999999999 45556654 8899999999886567999999999998765

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.93  E-value=1.4e-24  Score=241.10  Aligned_cols=165  Identities=21%  Similarity=0.229  Sum_probs=129.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCCC--c
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR--L  392 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~~--l  392 (623)
                      .+.+.|++++||++.+  ++++++.+| +.++|+|+||+|||||||+| |...+..        ....|++|.....  .
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~   81 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK   81 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence            5789999999998887  999999999 99999999999999999999 5543321        0123566654211  1


Q ss_pred             cHHH---------------------------------------------------HHHHHcCCchhhhcccccccHHHH-
Q 006974          393 PWFD---------------------------------------------------LILADIGDHQSLEQNLSTFSGHIS-  420 (623)
Q Consensus       393 ~~~d---------------------------------------------------~i~~~ig~~~~~~~~~stfS~g~~-  420 (623)
                      ++++                                                   .++..+|..+. ++++++||||++ 
T Consensus        82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~  160 (530)
T COG0488          82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRR  160 (530)
T ss_pred             cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHH
Confidence            1111                                                   22334455555 889999999999 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE  496 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~  496 (623)
                      |+++|.++..+|++|||||||||||......|..    +|.+..+|+|+||||.+ +..+|++++.+.+|.+..+.+
T Consensus       161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~----~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G  233 (530)
T COG0488         161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLED----YLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKG  233 (530)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH----HHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence            8999999999999999999999999987766655    55555569999999998 778999999999998776654

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.93  E-value=4.8e-25  Score=219.86  Aligned_cols=160  Identities=21%  Similarity=0.252  Sum_probs=128.8

Q ss_pred             eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecC
Q 006974          331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA  386 (623)
Q Consensus       331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~  386 (623)
                      ||+|+|++..+++||++.+  ++++|+|||||||||||+++ |++.+.                       .+...|+|+
T Consensus         5 ~l~~~~~~~~~~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q   82 (214)
T cd03297           5 DIEKRLPDFTLKIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ   82 (214)
T ss_pred             eeeEecCCeeeCceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEec
Confidence            8999999877799999987  79999999999999999999 765421                       012346676


Q ss_pred             CCCC--CccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          387 KNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       387 ~~~~--~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      ....  .+++                   +..++..+|+....++.+++||+||+ |+.++++++.+|+++||||||+||
T Consensus        83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L  162 (214)
T cd03297          83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL  162 (214)
T ss_pred             CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            5421  1121                   22345677777778899999999999 899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          445 DPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++..
T Consensus       163 D~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  212 (214)
T cd03297         163 DRALRLQLLPELK-QIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY  212 (214)
T ss_pred             CHHHHHHHHHHHH-HHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence            9999999999544 4554 4789999999987 567999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.5e-25  Score=228.17  Aligned_cols=168  Identities=17%  Similarity=0.187  Sum_probs=136.5

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      .++.++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                   .+...
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG   84 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence            46899999999987655  999999999 99999999999999999999 765421                   11234


Q ss_pred             eecCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+....  ...+                         ++.++..+|+.+..++.+++||+||+ |+.++++++.+|++
T Consensus        85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  164 (265)
T PRK10253         85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI  164 (265)
T ss_pred             EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE
Confidence            67765311  0111                         22345566777778899999999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       165 lllDEPt~gLD~~~~~~l~~~L~-~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  225 (265)
T PRK10253        165 MLLDEPTTWLDISHQIDLLELLS-ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ  225 (265)
T ss_pred             EEEeCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999554 4554 4789999999987 6789999999999998754

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.5e-25  Score=230.20  Aligned_cols=169  Identities=12%  Similarity=0.100  Sum_probs=133.1

Q ss_pred             CcEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974          325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------  377 (623)
                      +.++++||++.|++.     .+  ++||++.+| ++++|+||||||||||||++ |++.+.                   
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence            468999999999763     24  999999999 99999999999999999999 665421                   


Q ss_pred             -----hhhceeecCCCCC---CccH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974          378 -----SKAGLYLPAKNHP---RLPW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 -----a~~G~~vp~~~~~---~l~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~  426 (623)
                           .+...|+|+....   ..++                     ++.++..+++. +..++.+++||+||+ |+++++
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence                 0112467775310   1111                     12345566763 567788999999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  232 (289)
T PRK13645        164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI  232 (289)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999554433345889999999987 5689999999999988654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.93  E-value=3.4e-25  Score=221.69  Aligned_cols=164  Identities=18%  Similarity=0.187  Sum_probs=127.8

Q ss_pred             EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      ++++|+++.|++  ..+  ++||++.+| ++++|+|||||||||||+++ |+..+.                   .+...
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG   81 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            788999999975  334  999999999 99999999999999999999 665321                   11234


Q ss_pred             eecCCCCC-CccHHH---------------HHHHHcCCchhhhcc-----------cccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNHP-RLPWFD---------------LILADIGDHQSLEQN-----------LSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~~-~l~~~d---------------~i~~~ig~~~~~~~~-----------~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+.... ..++.+               .++..+++.+.+++.           +.+|||||+ |+.++++++.+|++
T Consensus        82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l  161 (220)
T cd03245          82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI  161 (220)
T ss_pred             EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            77776421 012222               234455665555553           369999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      +||||||+|||+.....+...+. .+.+. .|+|++||+.++..+|++++.+.+|.+..
T Consensus       162 lllDEPt~~LD~~~~~~l~~~l~-~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~  218 (220)
T cd03245         162 LLLDEPTSAMDMNSEERLKERLR-QLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVA  218 (220)
T ss_pred             EEEeCccccCCHHHHHHHHHHHH-HhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence            99999999999999999999544 45554 89999999998668999999999998753

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.93  E-value=2e-25  Score=230.53  Aligned_cols=166  Identities=17%  Similarity=0.111  Sum_probs=133.1

Q ss_pred             EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhc
Q 006974          328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAG  381 (623)
Q Consensus       328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G  381 (623)
                      .++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                       .+..
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            35688999988765  999999999 99999999999999999999 766421                       1123


Q ss_pred             eeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          382 LYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       382 ~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      .|+|+....  .+++                     ++.++..+|+.+.+++.+++||+||+ |+++|++++.+|+++||
T Consensus       105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL  184 (269)
T cd03294         105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM  184 (269)
T ss_pred             EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            467765311  1111                     12345667888888999999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~  242 (269)
T cd03294         185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV  242 (269)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            99999999999999999554433345789999999987 5689999999999988654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.93  E-value=1.9e-25  Score=234.81  Aligned_cols=168  Identities=19%  Similarity=0.238  Sum_probs=139.9

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceee
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYL  384 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~v  384 (623)
                      ..++++||+|.||+..+  ++|+++.+| +++.|+||+||||||+||+| |+..+-+                 +...+|
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V   82 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV   82 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence            35889999999997665  899999999 99999999999999999999 5554321                 112356


Q ss_pred             cCCC--CCCccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          385 PAKN--HPRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       385 p~~~--~~~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+.  ++.+++++                      +++..+++.+..++.++.||||++ |+++|++++.+|.++||||
T Consensus        83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE  162 (352)
T COG3842          83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE  162 (352)
T ss_pred             ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence            6653  12333333                      346677888899999999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |.+.||..-+..+...+.+...+.|.|+|++|||.+ -..++|++.++.+|+++-
T Consensus       163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q  217 (352)
T COG3842         163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ  217 (352)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence            999999999999999777777778999999999987 457999999999998753

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.93  E-value=2.9e-25  Score=227.01  Aligned_cols=165  Identities=19%  Similarity=0.254  Sum_probs=132.3

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCC--Cc
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--RL  392 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~--~l  392 (623)
                      .++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |++.+.+        ....|+|+....  .+
T Consensus         4 ~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l   82 (251)
T PRK09544          4 LVSLENVSVSFGQRRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTL   82 (251)
T ss_pred             EEEEeceEEEECCceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccccc
Confidence            5789999999987655  999999999 99999999999999999999 7665421        123467776311  11


Q ss_pred             --cH--------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974          393 --PW--------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS  455 (623)
Q Consensus       393 --~~--------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a  455 (623)
                        ..              +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|||+.....+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~  162 (251)
T PRK09544         83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDL  162 (251)
T ss_pred             ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence              11              22345677888888999999999999 89999999999999999999999999999999995


Q ss_pred             HHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          456 ILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       456 ll~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      +. .+.+. +.|+|++||+.+ +..+|++++.+.+ .+..
T Consensus       163 L~-~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~  200 (251)
T PRK09544        163 ID-QLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC  200 (251)
T ss_pred             HH-HHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence            54 45544 789999999988 5688999988864 5543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.93  E-value=3.2e-25  Score=227.27  Aligned_cols=166  Identities=17%  Similarity=0.184  Sum_probs=134.8

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceee
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYL  384 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~v  384 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||+|||||||+| |++.+-                   .+...|+
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            578999999987666  999999999 99999999999999999999 665421                   1123477


Q ss_pred             cCCCCC--CccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          385 PAKNHP--RLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       385 p~~~~~--~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      |+....  .+++                         +..++..+|+.+..++.++.||+||+ |++++++++.+|+++|
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  160 (256)
T TIGR03873        81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL  160 (256)
T ss_pred             cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            776311  1111                         12345566777778899999999999 7999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|+|+.....+.. ++..+.+++.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 lDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  218 (256)
T TIGR03873       161 LDEPTNHLDVRAQLETLA-LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA  218 (256)
T ss_pred             EcCccccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence            999999999999999999 55566666889999999988 5589999999999988754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=4.6e-25  Score=236.12  Aligned_cols=166  Identities=19%  Similarity=0.264  Sum_probs=134.6

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhce
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~  382 (623)
                      +++ ||+++|++..+++||++.+| ++++|+||||||||||||+| |++.+.                       .+...
T Consensus         2 l~~-~l~k~~~~~~~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~   79 (352)
T PRK11144          2 LEL-NFKQQLGDLCLTVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG   79 (352)
T ss_pred             eEE-EEEEEeCCEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence            556 89999998667999999999 99999999999999999999 775431                       01123


Q ss_pred             eecCCCC--CCccH---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          383 YLPAKNH--PRLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       383 ~vp~~~~--~~l~~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      |+|+...  ..+++               ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus        80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L  159 (352)
T PRK11144         80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL  159 (352)
T ss_pred             EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence            6676541  11222               23456778888888999999999999 899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+..+..+...+.+...+.+.|+|++||+.+ +..+||++..+.+|++...
T Consensus       160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~  210 (352)
T PRK11144        160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF  210 (352)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence            9999999999554433344789999999987 6689999999999988654

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=2.9e-25  Score=221.56  Aligned_cols=163  Identities=23%  Similarity=0.232  Sum_probs=129.6

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceee
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYL  384 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~v  384 (623)
                      +..++++|++++|+++.+  ++||++.+| ++++|+||||||||||+|++ |+..+-                .+...|+
T Consensus         9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~   87 (214)
T PRK13543          9 PPLLAAHALAFSRNEEPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL   87 (214)
T ss_pred             cceEEEeeEEEecCCceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEe
Confidence            346899999999987655  999999999 99999999999999999999 665431                1113466


Q ss_pred             cCCCC--CCccHH------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          385 PAKNH--PRLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       385 p~~~~--~~l~~~------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                      |+...  ..++..                  ..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus        88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  167 (214)
T PRK13543         88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN  167 (214)
T ss_pred             ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            66531  111222                  2345566777777889999999999 89999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      +|+.....+.. ++..+.+.+.|+|++||+.+ +..+|++.+.+..
T Consensus       168 LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        168 LDLEGITLVNR-MISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CCHHHHHHHHH-HHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            99999999998 55555666889999999987 6689988776653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4e-25  Score=229.24  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=134.4

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      .++++||+++|+ +..+  ++||++.+| ++++|+||||||||||+|+| |+..+.                   .+...
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   81 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG   81 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence            478899999995 4434  999999999 99999999999999999999 665421                   11224


Q ss_pred             eecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          383 YLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       383 ~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      |+|+...   ...++                     ++.++..+|+.+..++.+..||+||+ |+.++++++.+|+++||
T Consensus        82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil  161 (277)
T PRK13652         82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL  161 (277)
T ss_pred             EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            6776531   11121                     23345667888888999999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+.....+... +..+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       162 DEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~  219 (277)
T PRK13652        162 DEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY  219 (277)
T ss_pred             eCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE
Confidence            999999999999999994 445554 4889999999988 4579999999999998765

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.6e-25  Score=225.21  Aligned_cols=167  Identities=14%  Similarity=0.170  Sum_probs=136.5

Q ss_pred             cEEEceeeeecCCc----c--c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------
Q 006974          326 EMTVGSLSKGISDF----P--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------  376 (623)
Q Consensus       326 ~l~~~~l~~~y~~~----~--v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------  376 (623)
                      ++++++|+|.|...    +  + ++||++++| ++++|+|++|+|||||+|++ +|-.+                     
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr   79 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR   79 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence            36889999999751    2  2 899999999 99999999999999999999 44322                     


Q ss_pred             -hhhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          377 -MSKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       377 -~a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                       ..+...+++|..+  ...++                     +..+++.+|+.|..+++++.||||+| |+++|++++.+
T Consensus        80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~  159 (339)
T COG1135          80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN  159 (339)
T ss_pred             HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence             1122235666531  11112                     23467889999999999999999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++||.||||+.|||.....+.. ++..+. +.|.|++++||.++ ++.+|+++.++++|+++..
T Consensus       160 P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~  223 (339)
T COG1135         160 PKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE  223 (339)
T ss_pred             CCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence            99999999999999999999999 555565 45889999999999 7789999999999998754

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.93  E-value=7.1e-25  Score=224.94  Aligned_cols=168  Identities=19%  Similarity=0.167  Sum_probs=134.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------h---------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M---------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------~---------  377 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||+|++ |++.+                .         
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~   84 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR   84 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence            5889999999987655  999999999 99999999999999999999 66532                1         


Q ss_pred             ---hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974          378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~  426 (623)
                         .+...|+|+...    ..++.                      ++.++..+|+. +.+++.+++||+||+ |+++|+
T Consensus        85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar  164 (258)
T PRK11701         85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR  164 (258)
T ss_pred             HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence               012357777641    01111                      12345667776 467899999999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+. ..+|++++.+.+|++...
T Consensus       165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~  233 (258)
T PRK11701        165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES  233 (258)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            99999999999999999999999999995554333448899999999885 468999999999998654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=7.4e-25  Score=224.86  Aligned_cols=166  Identities=19%  Similarity=0.240  Sum_probs=131.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------------  376 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--------------------------  376 (623)
                      .++++|+++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+                          
T Consensus        12 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   90 (258)
T PRK14268         12 QIKVENLNLWYGEKQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE   90 (258)
T ss_pred             eEEEeeeEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence            5889999999987655  999999999 99999999999999999999 76532                          


Q ss_pred             hhhhceeecCCCCC-CccHHH---------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHHhc
Q 006974          377 MSKAGLYLPAKNHP-RLPWFD---------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       377 ~a~~G~~vp~~~~~-~l~~~d---------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      ..+...|+|+.... ..+..+                     .++..+|+    .+..++.+.+||+||+ |++++++++
T Consensus        91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  170 (258)
T PRK14268         91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA  170 (258)
T ss_pred             HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            01123466765311 112222                     23444554    2345778899999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       171 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  234 (258)
T PRK14268        171 VKPKIILFDEPTSALDPISTARIED-LIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEF  234 (258)
T ss_pred             cCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999998 4545554 689999999987 5678999999999998654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5e-25  Score=229.04  Aligned_cols=168  Identities=18%  Similarity=0.167  Sum_probs=135.9

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------------
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------------  378 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---------------------  378 (623)
                      .+++++|+++.|++  ..+  ++||++.+| ++++|+||||||||||+|+| |+..+..                     
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~   82 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI   82 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence            46899999999964  234  999999999 99999999999999999999 7654321                     


Q ss_pred             -hhceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          379 -KAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       379 -~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                       +...|+|+...   ....+                     ++.++..+|+.+..++.++.||+||+ |++++++++.+|
T Consensus        83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P  162 (282)
T PRK13640         83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP  162 (282)
T ss_pred             HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence             12246776531   11111                     22346667888888999999999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+|||+.....+...+ ..+.+ .|.|+|++||+++....|++++.+.+|++...
T Consensus       163 ~llllDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~  224 (282)
T PRK13640        163 KIIILDESTSMLDPAGKEQILKLI-RKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQ  224 (282)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999954 45554 48899999999986678999999999998765

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.93  E-value=7.8e-25  Score=226.36  Aligned_cols=166  Identities=19%  Similarity=0.163  Sum_probs=132.8

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------------  377 (623)
                      ++++|++++|++..+  ++||++.+| ++++|+||||||||||||+| |++.+.                          
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR   80 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence            678999999987665  999999999 99999999999999999999 776432                          


Q ss_pred             -hhhceeecCCCC--CCccHH-------------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNH--PRLPWF-------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~--~~l~~~-------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+...  ..+++.                         ..++..+|+....++.+++||+||+ |+++++++
T Consensus        81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral  160 (272)
T PRK13547         81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL  160 (272)
T ss_pred             HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence             112346676531  111222                         2344556777777889999999999 79999999


Q ss_pred             c---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 V---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +         .+|+++||||||+|||+.....+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~  236 (272)
T PRK13547        161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR-RLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH  236 (272)
T ss_pred             hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHH-HHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence            8         5999999999999999999999999555 4554 4789999999987 5579999999999988654

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.92  E-value=4.3e-25  Score=236.03  Aligned_cols=167  Identities=16%  Similarity=0.206  Sum_probs=136.0

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~  386 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+-                 .+...|+|+
T Consensus         3 L~i~~l~~~~~~~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q   81 (353)
T PRK10851          3 IEIANIKKSFGRTQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ   81 (353)
T ss_pred             EEEEEEEEEeCCeEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence            688999999987655  999999999 99999999999999999999 665431                 112346777


Q ss_pred             CCC--CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          387 KNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       387 ~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      +..  ..+++                         +..++..+|+.+..++.+.+|||||+ |++++++++.+|+++|||
T Consensus        82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD  161 (353)
T PRK10851         82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD  161 (353)
T ss_pred             CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            641  11111                         22356677888888999999999999 899999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||+|||+..+..+...+.+...+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~  218 (353)
T PRK10851        162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA  218 (353)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999555433344889999999987 5789999999999998754

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=3.8e-25  Score=219.09  Aligned_cols=154  Identities=21%  Similarity=0.238  Sum_probs=121.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~vp  385 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||++++ |+..+.+                  +.-.|+|
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~   80 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG   80 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence            678999999987655  999999999 99999999999999999999 6654311                  1123455


Q ss_pred             CCCC--CCccH------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          386 AKNH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       386 ~~~~--~~l~~------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      +...  ..+++                  ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|+
T Consensus        81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L  160 (204)
T PRK13538         81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI  160 (204)
T ss_pred             CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            4421  11111                  23456677887778899999999999 899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccc
Q 006974          445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK  482 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~  482 (623)
                      |+.....+.. ++..+.+.+.|+|++||+.+....|+.
T Consensus       161 D~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~i~~~~~  197 (204)
T PRK13538        161 DKQGVARLEA-LLAQHAEQGGMVILTTHQDLPVASDKV  197 (204)
T ss_pred             CHHHHHHHHH-HHHHHHHCCCEEEEEecChhhhccCCc
Confidence            9999999998 455556668899999999875543443

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.92  E-value=3.4e-25  Score=238.19  Aligned_cols=169  Identities=17%  Similarity=0.191  Sum_probs=138.2

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceee
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYL  384 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~v  384 (623)
                      .+++++|+++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+-                 .+...|+
T Consensus        13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v   91 (375)
T PRK09452         13 PLVELRGISKSFDGKEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV   91 (375)
T ss_pred             ceEEEEEEEEEECCeEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            35899999999987655  899999999 99999999999999999999 766531                 1223467


Q ss_pred             cCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974          385 PAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI  440 (623)
Q Consensus       385 p~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp  440 (623)
                      |++..  ..+++.                     +.++..+|+.+..++.+++|||||+ |++++++++.+|+++|||||
T Consensus        92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP  171 (375)
T PRK09452         92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES  171 (375)
T ss_pred             ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            77641  122222                     2345667888888999999999999 89999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++|||+..+..+...+.+...+.+.|+|++|||.+ ...++|++..+.+|++...
T Consensus       172 ~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~  226 (375)
T PRK09452        172 LSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD  226 (375)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999555544455889999999987 5679999999999998754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.92  E-value=4.6e-25  Score=223.97  Aligned_cols=166  Identities=22%  Similarity=0.281  Sum_probs=128.8

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh-------------------hhh-c
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKA-G  381 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~-------------------a~~-G  381 (623)
                      ++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+.  .+.                   .+. .
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   79 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL   79 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence            367899999987655  999999999 99999999999999999999 773  210                   112 2


Q ss_pred             eeecCCCCC--CccH----------------------------HHHHHHHcCCch-hhhcccc-cccHHHH-HHHHHHHh
Q 006974          382 LYLPAKNHP--RLPW----------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILEL  428 (623)
Q Consensus       382 ~~vp~~~~~--~l~~----------------------------~d~i~~~ig~~~-~~~~~~s-tfS~g~~-rl~~~~~l  428 (623)
                      .|+|+....  .++.                            +..++..+|+.+ ..++.+. .||+||+ |+++++++
T Consensus        80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al  159 (243)
T TIGR01978        80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA  159 (243)
T ss_pred             EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence            466766411  0111                            122344566653 4566776 5999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-Hhh-ccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCL-KDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~-~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+... +..+.+.+.|+|++||+.+. ..+ |++++.+.+|++...
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~  226 (243)
T TIGR01978       160 LLEPKLAILDEIDSGLDIDALKIVAEG-INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS  226 (243)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence            999999999999999999999999994 45566668899999999884 456 799999999988654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.92  E-value=5.1e-25  Score=246.10  Aligned_cols=167  Identities=17%  Similarity=0.152  Sum_probs=136.0

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      +++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+-                   .+.-.+
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~   81 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD   81 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence            4789999999987555  999999999 99999999999999999999 765421                   011235


Q ss_pred             ecCCCCC----------CccH-------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNHP----------RLPW-------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~~----------~l~~-------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+....          .+.+             +..++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||
T Consensus        82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  161 (490)
T PRK10938         82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE  161 (490)
T ss_pred             eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            5654211          1111             23456788888888999999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       162 Pt~~LD~~~~~~l~~-~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~  216 (490)
T PRK10938        162 PFDGLDVASRQQLAE-LLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET  216 (490)
T ss_pred             CcccCCHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence            999999999999999 55556666889999999987 6689999999999987653

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.92  E-value=2.6e-25  Score=220.17  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=122.0

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhce
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL  382 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~  382 (623)
                      ++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                       .+...
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            3688999987655  999999999 99999999999999999999 665421                       11234


Q ss_pred             eecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          383 YLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       383 ~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      |+|+...  ...++                     +..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++|||
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD  159 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD  159 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            5665531  11111                     12356677887788899999999999 899999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT  484 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~  484 (623)
                      |||+|+|+.....+... +..+.+.+.++|++||+.++..+|+++.
T Consensus       160 EPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~d~i~  204 (206)
T TIGR03608       160 EPTGSLDPKNRDEVLDL-LLELNDEGKTIIIVTHDPEVAKQADRVI  204 (206)
T ss_pred             CCcCCCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence            99999999999999995 4555556889999999998666777654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=9.8e-25  Score=223.34  Aligned_cols=167  Identities=22%  Similarity=0.307  Sum_probs=131.2

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------  377 (623)
                      ..++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+-                        
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (254)
T PRK14273          6 AIIETENLNLFYTDFKALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL   84 (254)
T ss_pred             ceEEEeeeEEEeCCceeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence            46899999999987555  999999999 99999999999999999999 776421                        


Q ss_pred             --hhhceeecCCCCC-CccHHHHH----------------------HHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974          378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                        .+...|+|+.... ..+..+++                      +..+++    .+..++.+++|||||+ |++++++
T Consensus        85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara  164 (254)
T PRK14273         85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART  164 (254)
T ss_pred             HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence              0112466665311 12222222                      233343    2346778899999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~  230 (254)
T PRK14273        165 LAIEPNVILMDEPTSALDPISTGKIEELII-NLKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE  230 (254)
T ss_pred             HHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999544 4554 689999999988 4678999999999998654

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.3e-25  Score=228.03  Aligned_cols=166  Identities=19%  Similarity=0.189  Sum_probs=133.8

Q ss_pred             EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhc
Q 006974          327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG  381 (623)
Q Consensus       327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G  381 (623)
                      ++++||++.|++ ..+  ++||++.+| ++++|+||||||||||+|++ |++.+.                     .+..
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence            678999999963 334  999999999 99999999999999999999 665321                     1123


Q ss_pred             eeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      .|+|+...   ...++                     +..++..+|+.+..++.+++||+||+ |+.++++++.+|+++|
T Consensus        81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll  160 (275)
T PRK13639         81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV  160 (275)
T ss_pred             EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            47777631   11122                     12345667777778899999999999 7999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|+|+.....+...+ ..+.+.+.|+|++||+.+ +..+|+++..+.+|++..+
T Consensus       161 lDEPt~gLD~~~~~~l~~~l-~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~  218 (275)
T PRK13639        161 LDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE  218 (275)
T ss_pred             EeCCCcCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999954 456656889999999988 4568999999999998765

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.7e-25  Score=228.73  Aligned_cols=167  Identities=17%  Similarity=0.149  Sum_probs=135.6

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhh
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~  380 (623)
                      +++++||++.|+ +..+  ++||++.+| ++++|+||||+|||||+|+| |++.+.                     ...
T Consensus         5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          5 ILKVEELNYNYSDGTHALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             eEEEEeEEEEeCCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence            688999999996 4444  999999999 99999999999999999999 665421                     112


Q ss_pred             ceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ..|+|+...   ....+                     ++.++..+|+....++.+..||+||+ |+.++++++.+|+++
T Consensus        84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL  163 (283)
T PRK13636         84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  163 (283)
T ss_pred             EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            357777641   11111                     23345677888888899999999999 799999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+...+ ..+.+ .|.|+|++||+.+. ..+|+++..+.+|++..+
T Consensus       164 ilDEPt~gLD~~~~~~l~~~l-~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~  223 (283)
T PRK13636        164 VLDEPTAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ  223 (283)
T ss_pred             EEeCCccCCCHHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999944 45554 48899999999884 569999999999998765

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.1e-24  Score=222.80  Aligned_cols=166  Identities=20%  Similarity=0.240  Sum_probs=129.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-----h-----------h---------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----L-----------M---------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-----~-----------~---------  377 (623)
                      .++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |+..     +           +         
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   84 (253)
T PRK14242          6 KMEARGLSFFYGDFQALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE   84 (253)
T ss_pred             EEEEeeeEEEECCeeeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence            5889999999987555  999999999 99999999999999999999 7642     0           0         


Q ss_pred             -hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..++.+++                      +..+|+.    ...++.+.+||+||+ |+++++++
T Consensus        85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  164 (253)
T PRK14242         85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence             1123467765311 01222222                      2334442    235677899999999 79999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~  229 (253)
T PRK14242        165 AVEPEVLLMDEPASALDPIATQKIEELI-HELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV  229 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999954 45554 689999999987 5689999999999988654

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.92  E-value=6.6e-25  Score=211.82  Aligned_cols=147  Identities=26%  Similarity=0.337  Sum_probs=113.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~vp  385 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+..                  +...|+|
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKG-EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP   79 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence            357899999976555  999999999 99999999999999999999 5443210                  1112344


Q ss_pred             CCCCC--CccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974          386 AKNHP--RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD  462 (623)
Q Consensus       386 ~~~~~--~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~  462 (623)
                      +....  ..++.+++              . ||+||+ |++++++++.+|+++||||||+|+|+.....+... +..+.+
T Consensus        80 q~~~~~~~~tv~~~~--------------~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~  143 (173)
T cd03230          80 EEPSLYENLTVRENL--------------K-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL-LRELKK  143 (173)
T ss_pred             cCCccccCCcHHHHh--------------h-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHH
Confidence            43210  01112221              1 999999 79999999999999999999999999999999994 555665


Q ss_pred             CCcEEEEEcCchh-HHhhccccceeeCce
Q 006974          463 RVGLAVVTTHYAD-LSCLKDKDTRFENAA  490 (623)
Q Consensus       463 ~~~~vii~TH~~~-l~~~~~~~~~i~~g~  490 (623)
                      +|.++|++||+.+ +..+|++.+.+.+|+
T Consensus       144 ~g~tiii~th~~~~~~~~~d~i~~l~~g~  172 (173)
T cd03230         144 EGKTILLSSHILEEAERLCDRVAILNNGR  172 (173)
T ss_pred             CCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence            5889999999987 556899998888774

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.92  E-value=6e-25  Score=226.71  Aligned_cols=167  Identities=18%  Similarity=0.165  Sum_probs=131.9

Q ss_pred             cEEEceeeeecCC---------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------
Q 006974          326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~---------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------  377 (623)
                      +++++||+++|++         ..+  ++||++.+| ++++|+||||||||||||+| |++.+.                
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence            5789999999962         234  999999999 99999999999999999999 776431                


Q ss_pred             ---hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974          378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~  426 (623)
                         .+...|+|+...    ..+.+                      +..++..+|+. +..+..+++||+||+ |+++++
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar  162 (267)
T PRK15112         83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR  162 (267)
T ss_pred             hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence               112346777531    00010                      12346677773 556778899999999 799999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+...+.+ +.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~  231 (267)
T PRK15112        163 ALILRPKVIIADEALASLDMSMRSQLINLMLE-LQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER  231 (267)
T ss_pred             HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH-HHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence            99999999999999999999999999995554 554 4889999999987 5568999999999988654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.92  E-value=6.4e-25  Score=221.75  Aligned_cols=166  Identities=16%  Similarity=0.157  Sum_probs=133.9

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~  386 (623)
                      +.++|++++|+++.+  +++|++.+| ++++|+||||+|||||||++ |+..+-+                 +.-.|+|+
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ   79 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence            357899999987666  999999999 99999999999999999999 6654311                 11245666


Q ss_pred             CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      ....  .+++                     ++.++..+|+.+.+++.+..||+|++ |++++++++.+|+++||||||+
T Consensus        80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~  159 (232)
T cd03300          80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG  159 (232)
T ss_pred             ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            5421  1121                     12345667888888899999999999 8999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          443 GTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+|+.....+...+.+ +.+ .+.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       160 gLD~~~~~~l~~~l~~-~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~  212 (232)
T cd03300         160 ALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI  212 (232)
T ss_pred             cCCHHHHHHHHHHHHH-HHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence            9999999999995554 554 4889999999988 5789999999999988654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.92  E-value=6.1e-25  Score=222.66  Aligned_cols=166  Identities=18%  Similarity=0.224  Sum_probs=134.5

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~  386 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||+|||||+|+| |++.+.                 .+...|+|+
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q   79 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ   79 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence            357899999987666  999999999 99999999999999999999 665431                 112346676


Q ss_pred             CCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          387 KNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       387 ~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      ....  .+++                     ++.++..+++.+..++.+.+||+||+ |++++++++.+|+++|||||++
T Consensus        80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~  159 (237)
T TIGR00968        80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG  159 (237)
T ss_pred             ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            5311  1111                     23456677787788899999999999 7999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          443 GTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+|+.....+...+ ..+.+. ++|+|++||+.+ +..+|+++..+.+|++...
T Consensus       160 ~LD~~~~~~~~~~l-~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~  212 (237)
T TIGR00968       160 ALDAKVRKELRSWL-RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI  212 (237)
T ss_pred             cCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence            99999999999954 455554 789999999988 5789999999999998754

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=223.95  Aligned_cols=167  Identities=19%  Similarity=0.242  Sum_probs=130.2

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-----hh-------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----LM-------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-----~~-------------------  377 (623)
                      .+++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..     +.                   
T Consensus        20 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   98 (268)
T PRK14248         20 HILEVKDLSIYYGEKRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV   98 (268)
T ss_pred             ceEEEEEEEEEeCCceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence            46899999999987665  999999999 99999999999999999999 7642     10                   


Q ss_pred             --hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974          378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                        .+...|+|+.... ..+.++++                      +..+++.    ...++.+++||+||+ |++++++
T Consensus        99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lara  178 (268)
T PRK14248         99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIART  178 (268)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHH
Confidence              1123466665311 01222222                      2333332    345678999999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus       179 l~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~  244 (268)
T PRK14248        179 LAMKPAVLLLDEPASALDPISNAKIEE-LITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY  244 (268)
T ss_pred             HhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999998 4545555 579999999987 6689999999999998765

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.92  E-value=6.6e-25  Score=220.70  Aligned_cols=162  Identities=23%  Similarity=0.219  Sum_probs=128.4

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      .+++++||++.|++..+  ++||++.+| ++++|+||||||||||+++| |+..+.                   .+...
T Consensus         6 ~~i~~~~l~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (225)
T PRK10247          6 PLLQLQNVGYLAGDAKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS   84 (225)
T ss_pred             ceEEEeccEEeeCCceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence            35889999999987665  999999999 99999999999999999999 665421                   11234


Q ss_pred             eecCCCCC-CccH-------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCC
Q 006974          383 YLPAKNHP-RLPW-------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEI  440 (623)
Q Consensus       383 ~vp~~~~~-~l~~-------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp  440 (623)
                      |+|+.... ..++                   +..++..+|+. ...++.+++||+|++ |++++++++.+|+++|||||
T Consensus        85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  164 (225)
T PRK10247         85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI  164 (225)
T ss_pred             EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            67765310 0011                   23456667775 467899999999999 89999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      |+|||+.....+...+.+...+.+.++|++||+.+....|++++.+.
T Consensus       165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~  211 (225)
T PRK10247        165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ  211 (225)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence            99999999999999555544445889999999988556798887775

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.92  E-value=7.1e-25  Score=211.58  Aligned_cols=152  Identities=22%  Similarity=0.288  Sum_probs=111.8

Q ss_pred             EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------H
Q 006974          327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------F  395 (623)
Q Consensus       327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~-------~  395 (623)
                      ++++|++++|++  ..+  +++|++.+| ++++|+|||||||||||+++        .|.+.|..|...+..       .
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~   71 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLI--------LGLLRPTSGRVRLDGADISQWDP   71 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------HhccCCCCCeEEECCEEcccCCH
Confidence            357899999975  233  999999999 99999999999999999999        333333332111000       0


Q ss_pred             HHHHHHcCC--------chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 006974          396 DLILADIGD--------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL  466 (623)
Q Consensus       396 d~i~~~ig~--------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~  466 (623)
                      ......++.        ...+..++  ||+||+ |++++++++.+|+++||||||+|+|+.....+... +..+.+++.|
T Consensus        72 ~~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~t  148 (173)
T cd03246          72 NELGDHVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA-IAALKAAGAT  148 (173)
T ss_pred             HHHHhheEEECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHH-HHHHHhCCCE
Confidence            001111110        00111112  999999 89999999999999999999999999999999994 5556666889


Q ss_pred             EEEEcCchhHHhhccccceeeCce
Q 006974          467 AVVTTHYADLSCLKDKDTRFENAA  490 (623)
Q Consensus       467 vii~TH~~~l~~~~~~~~~i~~g~  490 (623)
                      +|++||+.+....|++++.+.+|+
T Consensus       149 ii~~sh~~~~~~~~d~v~~l~~G~  172 (173)
T cd03246         149 RIVIAHRPETLASADRILVLEDGR  172 (173)
T ss_pred             EEEEeCCHHHHHhCCEEEEEECCC
Confidence            999999998667899988888775

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.92  E-value=1.2e-24  Score=222.86  Aligned_cols=168  Identities=14%  Similarity=0.180  Sum_probs=131.6

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----h-----------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----~-----------------a~~G~  382 (623)
                      .++++||+++|+...+ ++||++.+| ++++|+||||||||||+|++ |+..+    .                 .+...
T Consensus         4 ~l~~~~l~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~   82 (254)
T PRK10418          4 QIELRNIALQAAQPLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA   82 (254)
T ss_pred             EEEEeCeEEEeccceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence            5789999999943333 999999999 99999999999999999999 77643    1                 01234


Q ss_pred             eecCCCCCC----ccH-------------------HHHHHHHcCCch---hhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          383 YLPAKNHPR----LPW-------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       383 ~vp~~~~~~----l~~-------------------~d~i~~~ig~~~---~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      |+|+.....    ..+                   +..++..+|+.+   .+++.+++||+|++ |++++++++.+|+++
T Consensus        83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL  162 (254)
T PRK10418         83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI  162 (254)
T ss_pred             EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence            777764211    111                   122345566654   46788999999999 799999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+...+.+...+.|.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus       163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~  222 (254)
T PRK10418        163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ  222 (254)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999554433445789999999988 5579999999999998654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1e-24  Score=210.11  Aligned_cols=165  Identities=19%  Similarity=0.242  Sum_probs=132.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhh----hh------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGL----AS------------------------  375 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl----~~------------------------  375 (623)
                      .++++||++.||++.+  ++++.++++ ++++|+||+|||||||||++.-    +.                        
T Consensus         7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~   85 (253)
T COG1117           7 AIEVRDLNLYYGDKHALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE   85 (253)
T ss_pred             eeEecceeEEECchhhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence            5789999999998776  999999999 9999999999999999999922    21                        


Q ss_pred             hhhhhceeecCCCC-CCccHHHHHHH---------------------HcC----CchhhhcccccccHHHH-HHHHHHHh
Q 006974          376 LMSKAGLYLPAKNH-PRLPWFDLILA---------------------DIG----DHQSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       376 ~~a~~G~~vp~~~~-~~l~~~d~i~~---------------------~ig----~~~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                      +..+.| .|+|.++ ..++++|++..                     ...    ..|.++++...||||++ |+++|+++
T Consensus        86 lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal  164 (253)
T COG1117          86 LRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence            123344 5666652 12445555421                     111    14667788899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |.+|++|||||||++|||.+...|.+ ++..|++ .-|+|+|||++. -++++|....|-+|.++..
T Consensus       165 Av~PeVlLmDEPtSALDPIsT~kIEe-Li~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~  229 (253)
T COG1117         165 AVKPEVLLMDEPTSALDPISTLKIEE-LITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVEF  229 (253)
T ss_pred             hcCCcEEEecCcccccCchhHHHHHH-HHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence            99999999999999999999999999 6666774 589999999987 6678999888888887644

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=7.1e-25  Score=227.63  Aligned_cols=166  Identities=20%  Similarity=0.166  Sum_probs=131.8

Q ss_pred             EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      ++++||++.|++     ..+  ++||++.+| ++++|+||||||||||||+| |++.+.                     
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence            678999999974     234  999999999 99999999999999999999 775421                     


Q ss_pred             --hhhceeecCCCC---CCccHH---------------------HHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974          378 --SKAGLYLPAKNH---PRLPWF---------------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       378 --a~~G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                        .+...|+|+...   ...++.                     +.++..+|+. ...++.+++||+||+ |+.++++++
T Consensus        82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              012347777631   111221                     2234556776 356888999999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+...+ ..+++.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       162 ~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  226 (280)
T PRK13649        162 MEPKILVLDEPTAGLDPKGRKELMTLF-KKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS  226 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999954 455656889999999988 5579999999999998654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.6e-24  Score=222.55  Aligned_cols=168  Identities=20%  Similarity=0.211  Sum_probs=131.5

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h------------------
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------  377 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------  377 (623)
                      .+.++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |++.+     .                  
T Consensus        11 ~~~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         11 PSKIQVRNLNFYYGKFHALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             CceEEEEEEEEEeCCeEEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            357899999999987655  999999999 99999999999999999999 77531     0                  


Q ss_pred             ---hhhceeecCCCCC-CccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHH
Q 006974          378 ---SKAGLYLPAKNHP-RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 ---a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~  426 (623)
                         .+...|+|+.... ..+..+                      .++..+|+    ....++.+.+||+||+ |+++++
T Consensus        90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  169 (260)
T PRK10744         90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR  169 (260)
T ss_pred             HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence               0112366665310 112222                      23344554    2346778899999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  236 (260)
T PRK10744        170 GIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF  236 (260)
T ss_pred             HHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999998544 4554 679999999987 5579999999999998764

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.92  E-value=7.2e-25  Score=219.55  Aligned_cols=164  Identities=22%  Similarity=0.306  Sum_probs=130.9

Q ss_pred             EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      ++++|+++.|++    ..+  ++||++.+| ++++|+||||+|||||++++ |+..+.                      
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence            678999999974    334  999999999 99999999999999999999 665321                      


Q ss_pred             hhhceeecCCCC--CCccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          378 SKAGLYLPAKNH--PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       378 a~~G~~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      .+...|+|+...  ..+++                      +..++..+|+.+..++.+.+||+||+ |+.++++++.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            122346666531  01111                      23456677888888999999999999 799999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT  491 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~  491 (623)
                      +++|||||++|+|+.....+...+.+...+.+.|+|++||++++..+|+++..+.+|++
T Consensus       161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            99999999999999999999995444333358999999999997789999999988764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=8.6e-25  Score=227.06  Aligned_cols=167  Identities=17%  Similarity=0.148  Sum_probs=134.9

Q ss_pred             cEEEceeeeecCC------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974          326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------  377 (623)
                      +++++|++++|++      +.+  ++||++.+| ++++|+||||||||||++++ |++.+.                   
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence            5789999999963      234  999999999 99999999999999999999 775421                   


Q ss_pred             -hhhceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          378 -SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       378 -a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                       .+...|+|+...   ....+                     ++.++..+|+.+..++.+.+||+||+ |+.++++++.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence             112346777531   00011                     23446677888888999999999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+++....|+++..+.+|.+...
T Consensus       163 p~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~  225 (280)
T PRK13633        163 PECIIFDEPTAMLDPSGRREVVN-TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVME  225 (280)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEe
Confidence            99999999999999999999998 5555654 58899999999986556999999999988765

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=224.64  Aligned_cols=166  Identities=19%  Similarity=0.259  Sum_probs=132.5

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeec
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp  385 (623)
                      .++++||++.|+ ++.+  ++||++.+| ++++|+||||||||||||+| |++.+.                .+...|+|
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~   84 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP   84 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence            478999999995 4445  999999999 99999999999999999999 776431                11234677


Q ss_pred             CCCCC----C--------c------c-----------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          386 AKNHP----R--------L------P-----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       386 ~~~~~----~--------l------~-----------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      +....    .        +      .           .++.++..+|+.+..++.+.+||+||+ |++++++++.+|+++
T Consensus        85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll  164 (272)
T PRK15056         85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI  164 (272)
T ss_pred             cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            65310    0        0      0           122356677888888899999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+.. ++..+.++|.|+|++||+.+ +..+|++.+.+ +|++...
T Consensus       165 llDEPt~~LD~~~~~~l~~-~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~  222 (272)
T PRK15056        165 LLDEPFTGVDVKTEARIIS-LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS  222 (272)
T ss_pred             EEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence            9999999999999999999 45556666889999999987 66889987655 8887654

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9e-25  Score=225.88  Aligned_cols=167  Identities=20%  Similarity=0.182  Sum_probs=133.4

Q ss_pred             cEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +++++|+++.|+  +..+  ++||++.+| ++++|+|||||||||||+++ |+..+.                   .+..
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence            578999999995  3344  999999999 99999999999999999999 665421                   1123


Q ss_pred             eeecCCCC---CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      .|+|+...   ...++.                     ..++..+|+...+++.+.+||+||+ |++++++++.+|+++|
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  165 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII  165 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            47776631   111222                     2345667787788999999999999 7999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|||+.....+...+ ..+.+. +.|+|++||+.+....|++++.+.+|++...
T Consensus       166 LDEP~~gLD~~~~~~l~~~l-~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~  223 (271)
T PRK13632        166 FDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQ  223 (271)
T ss_pred             EeCCcccCCHHHHHHHHHHH-HHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEe
Confidence            99999999999999999854 445544 5899999999885568999999999998654

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=7.1e-25  Score=236.04  Aligned_cols=170  Identities=14%  Similarity=0.155  Sum_probs=139.8

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhcee
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLY  383 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~  383 (623)
                      ..+++++|+++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                 .+...|
T Consensus        17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   95 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM   95 (377)
T ss_pred             CceEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            346899999999987555  899999999 99999999999999999999 666431                 112347


Q ss_pred             ecCCCC--CCccHHH---------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNH--PRLPWFD---------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~--~~l~~~d---------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|++..  ..+++.+                     .++..+|+.+..++.+.+|||||+ |++++++++.+|+++||||
T Consensus        96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE  175 (377)
T PRK11607         96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE  175 (377)
T ss_pred             EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            777641  1222222                     345667788888999999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++|||+..+..+...+.+.+.+.+.|+|++|||.+ ...+||++..+.+|++...
T Consensus       176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~  231 (377)
T PRK11607        176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI  231 (377)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence            999999999999998666666666899999999987 5689999999999998754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9e-25  Score=225.60  Aligned_cols=167  Identities=14%  Similarity=0.081  Sum_probs=133.6

Q ss_pred             cEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          326 EMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +++++|+++.|++.  .+  ++||++.+| ++++|+||||||||||+|+| |++.+.                   .+..
T Consensus         7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          7 IIVFKNVSFQYQSDASFTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            58899999999752  23  999999999 99999999999999999999 775431                   1122


Q ss_pred             eeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      .|+|+...   ....+                     +..++..+|+.+..++.+..||+||+ |++++++++.+|+++|
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  165 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII  165 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            46776531   00111                     12345667877788899999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|||+.....+...+. .+.+ .+.|+|++||+.+....|+++..+.+|++..+
T Consensus       166 LDEPt~~LD~~~~~~l~~~L~-~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~  223 (269)
T PRK13648        166 LDEATSMLDPDARQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKE  223 (269)
T ss_pred             EeCCcccCCHHHHHHHHHHHH-HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEe
Confidence            999999999999999999554 4554 47899999999885556999999999998765

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9.6e-25  Score=227.40  Aligned_cols=166  Identities=15%  Similarity=0.195  Sum_probs=133.5

Q ss_pred             EEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          327 MTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      ++++||++.|++     ..+  ++||++.+| ++++|+||||||||||+|+| |++.+.                     
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            678999999963     134  999999999 99999999999999999999 665421                     


Q ss_pred             --hhhceeecCCCC-CCc--cH---------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974          378 --SKAGLYLPAKNH-PRL--PW---------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       378 --a~~G~~vp~~~~-~~l--~~---------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                        .+...|+|+... ..+  ++                     +..++..+|+. +..++.+.+||+||+ |++++++++
T Consensus        82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~  161 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA  161 (286)
T ss_pred             HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              112247777531 111  11                     12345677886 567889999999999 799999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+.. ++..+.+ .|.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       162 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~  227 (286)
T PRK13646        162 MNPDIIVLDEPTAGLDPQSKRQVMR-LLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ  227 (286)
T ss_pred             hCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999 5555654 5889999999988 5679999999999998765

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.1e-24  Score=235.48  Aligned_cols=165  Identities=16%  Similarity=0.111  Sum_probs=128.6

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhce
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGL  382 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~  382 (623)
                      ..++.+.|+...+  ++||++.+| ++++|+||||||||||||+| |++.+.                       .+...
T Consensus        31 ~~~~~~~~~~~~~L~~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig  109 (400)
T PRK10070         31 KEQILEKTGLSLGVKDASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA  109 (400)
T ss_pred             HHHHHhhcCCeEEEEeEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEE
Confidence            3344444443323  999999999 99999999999999999999 776431                       01235


Q ss_pred             eecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          383 YLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       383 ~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      |+|+....  .+++                     ++.++..+|+.+..++.+++|||||+ |+.++++++.+|+++|||
T Consensus       110 yv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD  189 (400)
T PRK10070        110 MVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD  189 (400)
T ss_pred             EEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            77876421  1122                     12346677888888999999999999 899999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||+|||+..+..+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~  246 (400)
T PRK10070        190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQV  246 (400)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEec
Confidence            9999999999999999555433345889999999987 5679999999999998654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.3e-24  Score=230.29  Aligned_cols=167  Identities=21%  Similarity=0.180  Sum_probs=134.2

Q ss_pred             cEEEceeeeecCCc----c-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------h---
Q 006974          326 EMTVGSLSKGISDF----P-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------M---  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~----~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~---  377 (623)
                      .++++||++.|++.    . + ++||++.+| ++++|+||||||||||+++| |++..                  +   
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence            47899999999752    2 3 999999999 99999999999999999999 87641                  0   


Q ss_pred             --h----hhceeecCCCCC----CccH----------------------HHHHHHHcCCc---hhhhcccccccHHHH-H
Q 006974          378 --S----KAGLYLPAKNHP----RLPW----------------------FDLILADIGDH---QSLEQNLSTFSGHIS-R  421 (623)
Q Consensus       378 --a----~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~---~~~~~~~stfS~g~~-r  421 (623)
                        .    +...|+|++...    .+.+                      +.+++..+|+.   ..+++.++.|||||+ |
T Consensus        82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR  161 (326)
T PRK11022         82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR  161 (326)
T ss_pred             HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence              0    124578887421    1111                      12345667775   346789999999999 8


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++++++.+|++||+||||+|||+.....+... +..+.+ .|.++|++|||+++ ..+||++.++.+|++...
T Consensus       162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~l-L~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL-LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999994 555554 58899999999985 579999999999998755

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=6.1e-25  Score=246.53  Aligned_cols=167  Identities=20%  Similarity=0.255  Sum_probs=137.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~  382 (623)
                      .++++|++++|++..+  ++||++.+| ++++|+||||||||||||+| |++.+.                   . ....
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   89 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY   89 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence            5889999999987665  999999999 99999999999999999999 776431                   0 1124


Q ss_pred             eecCCCC--CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          383 YLPAKNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       383 ~vp~~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      |+|+...  ..+++                 +..++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+
T Consensus        90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~  169 (510)
T PRK15439         90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA  169 (510)
T ss_pred             EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            7777642  11122                 22346677887778899999999999 8999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|++...
T Consensus       170 ~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~  221 (510)
T PRK15439        170 SLTPAETERLFS-RIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS  221 (510)
T ss_pred             CCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999 55556667889999999987 5689999999999988653

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.2e-24  Score=229.72  Aligned_cols=168  Identities=16%  Similarity=0.156  Sum_probs=135.1

Q ss_pred             CcEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974          325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------  377 (623)
                      ..++++||++.|++.     .+  ++||++.+| ++++|+||||||||||+|++ |+..+.                   
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence            578999999999742     23  999999999 99999999999999999999 665321                   


Q ss_pred             ----------------hhhceeecCCCCC-Cc--cH---------------------HHHHHHHcCCc-hhhhccccccc
Q 006974          378 ----------------SKAGLYLPAKNHP-RL--PW---------------------FDLILADIGDH-QSLEQNLSTFS  416 (623)
Q Consensus       378 ----------------a~~G~~vp~~~~~-~l--~~---------------------~d~i~~~ig~~-~~~~~~~stfS  416 (623)
                                      .+...|+|+.... .+  ++                     +..++..+|+. +..++.+.+||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  178 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS  178 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence                            0112467765310 11  11                     12345667775 56788999999


Q ss_pred             HHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          417 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       417 ~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||++ |++++++++.+|+++||||||+|||+.....+.. ++..+.+++.|+|++||+++ +..+|++++.+.+|++..+
T Consensus       179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~  257 (320)
T PRK13631        179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT  257 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999 8999999999999999999999999999999999 55556666889999999998 5689999999999998765

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.8e-24  Score=220.72  Aligned_cols=166  Identities=16%  Similarity=0.240  Sum_probs=130.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------h
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------S  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------a  378 (623)
                      .++++||++.|++..+  ++||++.+| ++++|+||||||||||+++| |+..+.                        .
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   81 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR   81 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence            3788999999987655  999999999 99999999999999999999 776420                        0


Q ss_pred             hhceeecCCCC--CCccHHHH-----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          379 KAGLYLPAKNH--PRLPWFDL-----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~~d~-----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                      ....|+|+...  ..+++.++                       ++..+|+.    ...++.+.+||+||+ |+++++++
T Consensus        82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  161 (250)
T PRK14247         82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL  161 (250)
T ss_pred             ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            11246776642  12233332                       23344543    245788899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  226 (250)
T PRK14247        162 AFQPEVLLADEPTANLDPENTAKIESLF-LELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEW  226 (250)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence            9999999999999999999999999954 44554 789999999988 5579999999999988654

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=8.6e-25  Score=245.17  Aligned_cols=166  Identities=16%  Similarity=0.175  Sum_probs=135.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h--------------------hhh
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~--------------------a~~  380 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+  .                    .+.
T Consensus         5 ~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   83 (506)
T PRK13549          5 LLEMKNITKTFGGVKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG   83 (506)
T ss_pred             eEEEeeeEEEeCCeEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence            5889999999987665  999999999 99999999999999999999 77653  0                    011


Q ss_pred             ceeecCCCC--CCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          381 GLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       381 G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      ..|+|+...  ..+++                        +..++..+|+.+..++.+++|||||+ |+++|++++.+|+
T Consensus        84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  163 (506)
T PRK13549         84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR  163 (506)
T ss_pred             eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence            346776531  11111                        23356667777777889999999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ++||||||+|||+.....+.. ++..+.+++.++|++||+.+ +..+||+++.+.+|++..
T Consensus       164 lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~  223 (506)
T PRK13549        164 LLILDEPTASLTESETAVLLD-IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG  223 (506)
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence            999999999999999999999 55556667889999999987 567899999999998754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.92  E-value=1.1e-24  Score=224.41  Aligned_cols=168  Identities=16%  Similarity=0.172  Sum_probs=132.4

Q ss_pred             cEEEceeeeecCC---------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------
Q 006974          326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~---------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------  377 (623)
                      +++++||++.|++         ..+  ++||++.+| ++++|+||||||||||||+| |+..+.                
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence            4788999999952         334  999999999 99999999999999999999 665421                


Q ss_pred             ------hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHH
Q 006974          378 ------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       378 ------a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~  423 (623)
                            .+...|+|+...    ..+++                      +..++..+|+. ...++.+..||+||+ |++
T Consensus        81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~  160 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN  160 (265)
T ss_pred             HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence                  112457777631    11121                      12345667775 567889999999999 799


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  232 (265)
T TIGR02769       161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE  232 (265)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence            9999999999999999999999999999999555443344889999999988 4568999999999988654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.92  E-value=1.7e-24  Score=221.46  Aligned_cols=168  Identities=20%  Similarity=0.183  Sum_probs=133.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+..+.                         
T Consensus         3 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (253)
T TIGR02323         3 LLQVSGLSKSYGGGKGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR   81 (253)
T ss_pred             eEEEeeeEEEeCCceEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence            5789999999986555  999999999 99999999999999999999 664320                         


Q ss_pred             ---hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974          378 ---SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 ---a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~  426 (623)
                         .+...|+|+...    ..+..                      ++.++..+|+. ...++.++.||+||+ |+++++
T Consensus        82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar  161 (253)
T TIGR02323        82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR  161 (253)
T ss_pred             HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence               011246666531    01111                      12335666775 467889999999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+...+.+...+.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus       162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~  230 (253)
T TIGR02323       162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES  230 (253)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence            9999999999999999999999999999555544445889999999988 4568999999999988654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.92  E-value=7.4e-25  Score=221.94  Aligned_cols=159  Identities=19%  Similarity=0.256  Sum_probs=123.0

Q ss_pred             eecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeecCC-CC--
Q 006974          334 KGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLPAK-NH--  389 (623)
Q Consensus       334 ~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp~~-~~--  389 (623)
                      +.|+...+  ++||++.+| ++++|+||||||||||||+| |++.+.                  .+...|+|+. ..  
T Consensus        29 ~~~~~~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  107 (236)
T cd03267          29 RKYREVEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW  107 (236)
T ss_pred             cccCCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence            44555555  999999999 99999999999999999999 765431                  1122356532 11  


Q ss_pred             CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          390 PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       390 ~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                      ..++..                     ..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|||+.
T Consensus       108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~  187 (236)
T cd03267         108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV  187 (236)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence            111111                     2235566777778889999999999 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ....+...+.+...+.+.|+|++||+.+ +..+|++++.+.+|++..
T Consensus       188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~  234 (236)
T cd03267         188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY  234 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence            9999999555433445789999999988 568999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=220.97  Aligned_cols=168  Identities=20%  Similarity=0.238  Sum_probs=131.1

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h----h----------------
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M----S----------------  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~----a----------------  378 (623)
                      +-+++++|+++.|++..+  ++||++.+| ++++|+|||||||||||++| |++.+  .    .                
T Consensus        10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         10 QEVYQINGMNLWYGQHHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             CceEEEeeEEEEECCeeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            446899999999987655  999999999 99999999999999999999 76531  0    0                


Q ss_pred             ----hhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHH
Q 006974          379 ----KAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       379 ----~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~  426 (623)
                          +...|+|+.... ....++                      .++..+|+.    +.+++.+++||+||+ |+++++
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar  168 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR  168 (259)
T ss_pred             HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence                112466665311 001111                      223445543    345778899999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus       169 al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~  235 (259)
T PRK14274        169 ALATNPDVLLMDEPTSALDPVSTRKIEEL-ILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVEC  235 (259)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999984 445555 689999999987 5679999999999998754

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.3e-24  Score=232.86  Aligned_cols=162  Identities=21%  Similarity=0.242  Sum_probs=131.5

Q ss_pred             eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecC
Q 006974          331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPA  386 (623)
Q Consensus       331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~  386 (623)
                      ||+++|++..+++||++.+| ++++|+||||||||||||+| |+..+.                       .+...|+|+
T Consensus         4 ~l~~~~~~~~~~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q   82 (354)
T TIGR02142         4 RFSKRLGDFSLDADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ   82 (354)
T ss_pred             EEEEEECCEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence            78999987666999999999 99999999999999999999 776431                       011246676


Q ss_pred             CCC--CCccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          387 KNH--PRLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       387 ~~~--~~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      ...  ..+++                   ++.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+||
T Consensus        83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L  162 (354)
T TIGR02142        83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL  162 (354)
T ss_pred             CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            531  11122                   23456677888888999999999999 899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          445 DPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+.....+...+. .+.+ .+.|+|++||+.+ +..+||++..+.+|++...
T Consensus       163 D~~~~~~l~~~L~-~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~  213 (354)
T TIGR02142       163 DDPRKYEILPYLE-RLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA  213 (354)
T ss_pred             CHHHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence            9999999999554 4554 4789999999987 5678999999999998654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.7e-24  Score=219.51  Aligned_cols=166  Identities=20%  Similarity=0.235  Sum_probs=129.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh---hh-------------h---------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA---SL-------------M---------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~---~~-------------~---------  377 (623)
                      +++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |+.   ..             .         
T Consensus         3 ~l~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14245          3 KIDARDVNFWYGDFHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE   81 (250)
T ss_pred             EEEEEEEEEEECCEeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence            5789999999987655  999999999 99999999999999999999 552   11             0         


Q ss_pred             -hhhceeecCCCCC-CccHH----------------------HHHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWF----------------------DLILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~----------------------d~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..++.                      +.++..+|+.    +..++.+.+||+||+ |+++++++
T Consensus        82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14245         82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM  161 (250)
T ss_pred             HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence             0123567765311 01111                      2234445553    345678889999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+...+. .+.+ ++++|++||+.+ +..+|++++.+.+|++...
T Consensus       162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~  226 (250)
T PRK14245        162 AVSPSVLLMDEPASALDPISTAKVEELIH-ELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY  226 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999544 4554 689999999987 5689999999999988654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.92  E-value=8e-25  Score=216.34  Aligned_cols=157  Identities=22%  Similarity=0.276  Sum_probs=123.6

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp  385 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||+|||||++++ |+..+.                  .+...|+|
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence            367899999987655  999999999 99999999999999999999 665421                  11224566


Q ss_pred             CCCCC--CccH---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          386 AKNHP--RLPW---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       386 ~~~~~--~l~~---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                      +....  ..+.               ++.++..+|+....++.+.+||+||+ |++++++++.+|+++||||||+|+|+.
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~  159 (201)
T cd03231          80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA  159 (201)
T ss_pred             cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence            54311  1122               23456677887778889999999999 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccce
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTR  485 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~  485 (623)
                      ....+...+ ..+.+.+.|+|++||+.. +..++++...
T Consensus       160 ~~~~l~~~l-~~~~~~g~tiii~sH~~~~~~~~~~~~~~  197 (201)
T cd03231         160 GVARFAEAM-AGHCARGGMVVLTTHQDLGLSEAGARELD  197 (201)
T ss_pred             HHHHHHHHH-HHHHhCCCEEEEEecCchhhhhccceeEe
Confidence            999999954 445666889999999865 6667766543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-24  Score=222.04  Aligned_cols=168  Identities=17%  Similarity=0.211  Sum_probs=132.1

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h------------------
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------  377 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------  377 (623)
                      .+.++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |++.+     .                  
T Consensus        17 ~~~l~~~nl~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~   95 (267)
T PRK14235         17 EIKMRARDVSVFYGEKQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV   95 (267)
T ss_pred             CceEEEEeEEEEECCEEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence            357999999999987655  999999999 99999999999999999999 77642     1                  


Q ss_pred             ---hhhceeecCCCCCC-ccHHH-----------------------HHHHHcCCch----hhhcccccccHHHH-HHHHH
Q 006974          378 ---SKAGLYLPAKNHPR-LPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       378 ---a~~G~~vp~~~~~~-l~~~d-----------------------~i~~~ig~~~----~~~~~~stfS~g~~-rl~~~  425 (623)
                         .+...|+|+..... .+..+                       .++..+|+.+    ..++.+.+||+||+ |++++
T Consensus        96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  175 (267)
T PRK14235         96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA  175 (267)
T ss_pred             HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence               01124666653110 12222                       2344455532    35678899999999 89999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++.+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~  243 (267)
T PRK14235        176 RAIAVSPEVILMDEPCSALDPIATAKVEE-LIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV  243 (267)
T ss_pred             HHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999 4555655 679999999988 5578999999999988654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.92  E-value=1.5e-24  Score=211.14  Aligned_cols=151  Identities=21%  Similarity=0.187  Sum_probs=115.5

Q ss_pred             CcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------------hhcee
Q 006974          325 SEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------------KAGLY  383 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------------~~G~~  383 (623)
                      .+++++|++++|  ..-+++|++.+| ++++|+||||||||||||++ |+..+.+                    +...|
T Consensus         3 ~~l~~~~l~~~~--~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (182)
T cd03215           3 PVLEVRGLSVKG--AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY   79 (182)
T ss_pred             cEEEEeccEEEe--eecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence            368899999999  222999999999 99999999999999999999 5543210                    11234


Q ss_pred             ecCCC-----CCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 006974          384 LPAKN-----HPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL  457 (623)
Q Consensus       384 vp~~~-----~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all  457 (623)
                      +|++.     ...++..+++....           .||+||+ |++++++++.+|+++|||||++|+|+.....+...+ 
T Consensus        80 ~~q~~~~~~~~~~~t~~e~l~~~~-----------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-  147 (182)
T cd03215          80 VPEDRKREGLVLDLSVAENIALSS-----------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI-  147 (182)
T ss_pred             ecCCcccCcccCCCcHHHHHHHHh-----------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH-
Confidence            44431     01122333321100           1999999 799999999999999999999999999999999954 


Q ss_pred             HHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974          458 QYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA  490 (623)
Q Consensus       458 ~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~  490 (623)
                      ..+.+.+.|+|++||+.+ +..+|++++.+.+|+
T Consensus       148 ~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~  181 (182)
T cd03215         148 RELADAGKAVLLISSELDELLGLCDRILVMYEGR  181 (182)
T ss_pred             HHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence            455656889999999986 778899998888875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=1e-24  Score=216.58  Aligned_cols=158  Identities=20%  Similarity=0.222  Sum_probs=122.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhceeecC
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAGLYLPA  386 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G~~vp~  386 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||++++ |+..+-                .....|+|+
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH   80 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence            4788999999987655  999999999 99999999999999999999 665321                011235554


Q ss_pred             CCC--CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          387 KNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       387 ~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      ...  ...++                 +..++..+|+.+..++.+.+||+||+ |+.++++++.+|+++||||||+|+|+
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~  160 (207)
T PRK13539         81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA  160 (207)
T ss_pred             CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            321  11122                 23345667777777889999999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      .....+... +..+.+++.|+|++||+.+...- ++++.+
T Consensus       161 ~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~-~~~~~~  198 (207)
T PRK13539        161 AAVALFAEL-IRAHLAQGGIVIAATHIPLGLPG-ARELDL  198 (207)
T ss_pred             HHHHHHHHH-HHHHHHCCCEEEEEeCCchhhcc-CcEEee
Confidence            999999984 44556668899999999875433 555444

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.92  E-value=1.6e-24  Score=218.09  Aligned_cols=166  Identities=15%  Similarity=0.158  Sum_probs=126.2

Q ss_pred             cEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      .++++|+++.|++ ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   .....
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG   80 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence            4789999999974 334  999999999 99999999999999999999 665421                   11234


Q ss_pred             eecCCCCC-CccHHHH---------------HHHHcCCc-----------hhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNHP-RLPWFDL---------------ILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~~-~l~~~d~---------------i~~~ig~~-----------~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+.... ..++.++               .+..++..           ....+.+..||+||+ |+.++++++.+|++
T Consensus        81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l  160 (229)
T cd03254          81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI  160 (229)
T ss_pred             EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            66765310 0011111               12222322           233455689999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus       161 lllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~  218 (229)
T cd03254         161 LILDEATSNIDTETEKLIQEAL-EKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEE  218 (229)
T ss_pred             EEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence            9999999999999999999954 45554 7899999999886567999999999988654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.9e-24  Score=219.25  Aligned_cols=166  Identities=24%  Similarity=0.313  Sum_probs=129.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      .++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                         
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ   81 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence            5789999999987555  999999999 99999999999999999999 754310                         


Q ss_pred             -hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..+..+++                      +..++..    +..++.+.+||+||+ |+++++++
T Consensus        82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14240         82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL  161 (250)
T ss_pred             HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence             0113466765321 12233322                      2233322    234678899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~  226 (250)
T PRK14240        162 AVEPEVLLMDEPTSALDPISTLKIEELI-QELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEF  226 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999854 44554 689999999988 6788999999999998755

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=8.7e-25  Score=244.86  Aligned_cols=166  Identities=18%  Similarity=0.175  Sum_probs=135.3

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      +++++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                    .+...
T Consensus         4 ~i~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   82 (501)
T PRK10762          4 LLQLKGIDKAFPGVKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG   82 (501)
T ss_pred             eEEEeeeEEEeCCeEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            5789999999987655  999999999 99999999999999999999 665431                    11124


Q ss_pred             eecCCCC--CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNH--PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~--~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+...  ..+++                         +..++..+|+.+..++.+++|||||+ |+++|++++.+|++
T Consensus        83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  162 (501)
T PRK10762         83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV  162 (501)
T ss_pred             EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            6776531  01111                         22346667777777889999999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      +||||||+|||+.....+.. ++..+.+.+.|+|++||+.+ +..+||+++.+.+|++..
T Consensus       163 llLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~  221 (501)
T PRK10762        163 IIMDEPTDALTDTETESLFR-VIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA  221 (501)
T ss_pred             EEEeCCcCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence            99999999999999999999 55566667889999999987 668999999999998754

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.4e-24  Score=220.32  Aligned_cols=166  Identities=20%  Similarity=0.209  Sum_probs=130.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------h------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a------------------  378 (623)
                      .++++||++.|++..+  +++|++.+| ++++|+||||||||||+|++ |++.+-      +                  
T Consensus         4 ~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (253)
T PRK14267          4 AIETVNLRVYYGSNHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE   82 (253)
T ss_pred             eEEEEeEEEEeCCeeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence            4789999999987655  999999999 99999999999999999999 775431      0                  


Q ss_pred             --hhceeecCCCCC--CccHHHH-----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHH
Q 006974          379 --KAGLYLPAKNHP--RLPWFDL-----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       379 --~~G~~vp~~~~~--~l~~~d~-----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~  426 (623)
                        +...|+|+....  .+++.++                       ++..+|+.    ...++.+.+||+|++ |+++++
T Consensus        83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  162 (253)
T PRK14267         83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR  162 (253)
T ss_pred             HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence              112466665311  1222222                       23344442    345678899999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+||++..+.+|++...
T Consensus       163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  229 (253)
T PRK14267        163 ALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV  229 (253)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999554 4554 589999999988 5679999999999998754

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.92  E-value=6.5e-25  Score=212.83  Aligned_cols=153  Identities=24%  Similarity=0.348  Sum_probs=112.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCC--------ccH-H
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR--------LPW-F  395 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~--------l~~-~  395 (623)
                      ++++|+++.|++..+  +++|++.+| ++++|+||||||||||+|++        .|.+.|.+|...        .+. .
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l--------~G~~~~~~G~i~~~g~~~~~~~~~~   71 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCI--------AGLEEPDSGSILIDGEDLTDLEDEL   71 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCceEEEECCEEccccchhH
Confidence            357899999987655  999999999 99999999999999999999        333333322110        000 0


Q ss_pred             HHHHHHcC---------Cchhhhccccc-ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-
Q 006974          396 DLILADIG---------DHQSLEQNLST-FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-  463 (623)
Q Consensus       396 d~i~~~ig---------~~~~~~~~~st-fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-  463 (623)
                      ......++         ....+...+.. ||+||+ |+.++++++.+|+++||||||+|+|+.....+.. ++..++++ 
T Consensus        72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~~  150 (178)
T cd03229          72 PPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRA-LLKSLQAQL  150 (178)
T ss_pred             HHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhc
Confidence            01111111         00112222222 999999 8999999999999999999999999999999999 45556665 


Q ss_pred             CcEEEEEcCchh-HHhhccccceeeCc
Q 006974          464 VGLAVVTTHYAD-LSCLKDKDTRFENA  489 (623)
Q Consensus       464 ~~~vii~TH~~~-l~~~~~~~~~i~~g  489 (623)
                      +.|+|++||+.+ +..+|+++..+.+|
T Consensus       151 ~~tiii~sH~~~~~~~~~d~i~~l~~g  177 (178)
T cd03229         151 GITVVLVTHDLDEAARLADRVVVLRDG  177 (178)
T ss_pred             CCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence            789999999987 45589998888776

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=6.3e-24  Score=243.80  Aligned_cols=164  Identities=21%  Similarity=0.197  Sum_probs=127.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh--------hceeecCCCCC----C
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK--------AGLYLPAKNHP----R  391 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~--------~G~~vp~~~~~----~  391 (623)
                      |.++||+++||++.+  ++||+|.+| ++++|+||||||||||||+| |++.+...        ...|+|+....    .
T Consensus         2 i~i~nls~~~g~~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~   80 (638)
T PRK10636          2 IVFSSLQIRRGVRVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA   80 (638)
T ss_pred             EEEEEEEEEeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence            678999999998766  999999999 99999999999999999999 76544210        01234442100    0


Q ss_pred             ccH---------------------------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHH
Q 006974          392 LPW---------------------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       392 l~~---------------------------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~  424 (623)
                      +.+                                             +..++..+|+. +..++++++|||||+ |+++
T Consensus        81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L  160 (638)
T PRK10636         81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL  160 (638)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence            000                                             11234556665 467889999999999 8999


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~  495 (623)
                      +++++.+|++|||||||+|||+.....|...+.    +.+++||++|||.+ +..+|++++.+.+|++....
T Consensus       161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~----~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~  228 (638)
T PRK10636        161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLK----SYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYT  228 (638)
T ss_pred             HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEec
Confidence            999999999999999999999999988777333    33679999999988 66899999999999886543

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.1e-24  Score=219.38  Aligned_cols=167  Identities=16%  Similarity=0.257  Sum_probs=130.8

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--h--------------h--------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L--------------M--------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~--------------~--------  377 (623)
                      +.++++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |+..  +              .        
T Consensus         3 ~~l~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   81 (252)
T PRK14256          3 NKVKLEQLNVHFGKNHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV   81 (252)
T ss_pred             cEEEEEEEEEEeCCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence            56899999999987655  999999999 99999999999999999999 7753  1              0        


Q ss_pred             --hhhceeecCCCC--CCccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHH
Q 006974          378 --SKAGLYLPAKNH--PRLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 --a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~  426 (623)
                        .+...|+|+...  ...++.+                      .++..+|+.    +..++.+.+||+||+ |+++++
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  161 (252)
T PRK14256         82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR  161 (252)
T ss_pred             HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence              011346777632  1112222                      223345543    345677899999999 799999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|+|+.....+.. +++.+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       162 al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14256        162 TIAVKPEVILMDEPASALDPISTLKIEE-LIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC  228 (252)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999 4555665 579999999988 5689999999999988654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.1e-24  Score=223.59  Aligned_cols=169  Identities=20%  Similarity=0.232  Sum_probs=131.6

Q ss_pred             CCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--h---h-----------------
Q 006974          323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L---M-----------------  377 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~---~-----------------  377 (623)
                      |+.+++++||+++|++..+  +++|++.+| ++++|+|||||||||||++| |+..  +   .                 
T Consensus        36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~  114 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEFEAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD  114 (286)
T ss_pred             CceEEEEeeeEEEECCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence            4457899999999987555  999999999 99999999999999999999 7642  1   0                 


Q ss_pred             ----hhhceeecCCCCCC-ccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHH
Q 006974          378 ----SKAGLYLPAKNHPR-LPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       378 ----a~~G~~vp~~~~~~-l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~  425 (623)
                          .+...|+|+..... .++.+                      .++..+|+    .+..++.+++||+||+ |+.++
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA  194 (286)
T PRK14275        115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA  194 (286)
T ss_pred             hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence                01224677664211 01111                      22334443    3456788999999999 79999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++.+|+++||||||+|||+.....+... +..+.. +.++|++||+.+ +..+|++++.+.+|++...
T Consensus       195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~-L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~  262 (286)
T PRK14275        195 RTLAVEPEILLLDEPTSALDPKATAKIEDL-IQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH  262 (286)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999994 445554 579999999988 4678999999999988654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.92  E-value=2.1e-24  Score=209.14  Aligned_cols=152  Identities=19%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             EEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------hhcee
Q 006974          327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------KAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------~~G~~  383 (623)
                      ++++|+++.|++.  .+  ++||++.+| ++++|+||||||||||||++ |+..+.+                  +...|
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~   79 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV   79 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence            3578999999764  34  999999999 99999999999999999999 4433210                  01123


Q ss_pred             ecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974          384 LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD  462 (623)
Q Consensus       384 vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~  462 (623)
                      +|+.. ..++ . .+.      +.+   +++||+||+ |+.++++++.+|+++||||||+|||+.....+...+ ..+. 
T Consensus        80 ~~q~~-~~~~-~-tv~------~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~-  145 (178)
T cd03247          80 LNQRP-YLFD-T-TLR------NNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-FEVL-  145 (178)
T ss_pred             EccCC-eeec-c-cHH------Hhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHc-
Confidence            33321 0000 0 011      111   789999999 799999999999999999999999999999999954 4455 


Q ss_pred             CCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          463 RVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       463 ~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      ++.|+|++||+.+....|++...+.+|++..
T Consensus       146 ~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~  176 (178)
T cd03247         146 KDKTLIWITHHLTGIEHMDKILFLENGKIIM  176 (178)
T ss_pred             CCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence            4789999999998666799999999988754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=1.9e-24  Score=243.20  Aligned_cols=166  Identities=20%  Similarity=0.219  Sum_probs=132.0

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh------------------------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM------------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~------------------------  377 (623)
                      ++++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |++  .+.                        
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g   79 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG   79 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence            468899999987655  999999999 99999999999999999999 775  220                        


Q ss_pred             ----------------------------hhhceeecCCCC---CCccH---------------------HHHHHHHcCCc
Q 006974          378 ----------------------------SKAGLYLPAKNH---PRLPW---------------------FDLILADIGDH  405 (623)
Q Consensus       378 ----------------------------a~~G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~  405 (623)
                                                  .+...|+|+...   ..+..                     +..++..+|+.
T Consensus        80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~  159 (520)
T TIGR03269        80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS  159 (520)
T ss_pred             cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence                                        011246666411   11121                     12346667787


Q ss_pred             hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcccc
Q 006974          406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD  483 (623)
Q Consensus       406 ~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~  483 (623)
                      +..++.+++|||||+ |+++|++++.+|+++||||||+|||+.....+...+.+...+.|.|||++||+.+ +..+|+++
T Consensus       160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i  239 (520)
T TIGR03269       160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA  239 (520)
T ss_pred             hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence            778899999999999 8999999999999999999999999999999999544433455889999999988 56799999


Q ss_pred             ceeeCceEEE
Q 006974          484 TRFENAATEF  493 (623)
Q Consensus       484 ~~i~~g~~~~  493 (623)
                      +.+.+|++..
T Consensus       240 ~~l~~G~i~~  249 (520)
T TIGR03269       240 IWLENGEIKE  249 (520)
T ss_pred             EEEeCCEEee
Confidence            9999888754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.3e-24  Score=228.37  Aligned_cols=168  Identities=15%  Similarity=0.092  Sum_probs=134.1

Q ss_pred             cEEEceeeeecCC----------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------
Q 006974          326 EMTVGSLSKGISD----------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~----------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------  377 (623)
                      +++++||++.|+.          ..+  ++||++.+| ++++|+|+||||||||+++| |++.+.               
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~   83 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD   83 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence            5889999999962          223  999999999 99999999999999999999 765421               


Q ss_pred             -------hhhceeecCCCCC----CccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HH
Q 006974          378 -------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RI  422 (623)
Q Consensus       378 -------a~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl  422 (623)
                             .+...|+|++...    .+..                      +..++..+|+. +..++.++.|||||+ |+
T Consensus        84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv  163 (327)
T PRK11308         84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI  163 (327)
T ss_pred             HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence                   1123577876421    1111                      23446677775 467899999999999 89


Q ss_pred             HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974          423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS  494 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~  494 (623)
                      +++++++.+|++||+||||+|||+.....+...+.+...+.|.|+|++|||+.+. .+||++.++.+|+++..
T Consensus       164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~  236 (327)
T PRK11308        164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK  236 (327)
T ss_pred             HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999955543334588999999999855 68999999999998765

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.92  E-value=1.6e-24  Score=219.27  Aligned_cols=165  Identities=16%  Similarity=0.097  Sum_probs=125.9

Q ss_pred             EEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          327 MTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      ++++||++.|++  .++  ++||++.+| ++++|+||||||||||||++ |+..+.                   .+...
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            357899999963  334  999999999 99999999999999999999 776421                   11234


Q ss_pred             eecCCCCC-CccHHHHH---------------HHHcC-----------CchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNHP-RLPWFDLI---------------LADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~~-~l~~~d~i---------------~~~ig-----------~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+.... ..++.+++               +...+           ....++..+.+||+||+ |+.++++++.+|++
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            67776411 11122211               11122           22334567899999999 79999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||||+|||+.....+...+. .+.+ +.|+|++||+.+....|+++..+.+|++...
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~  217 (237)
T cd03252         160 LIFDEATSALDYESEHAIMRNMH-DICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ  217 (237)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHH-HhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999554 4554 7899999999986667999999999998755

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=242.58  Aligned_cols=167  Identities=17%  Similarity=0.199  Sum_probs=135.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h-hhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S-KAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a-~~G~  382 (623)
                      +++++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   . +...
T Consensus         5 ~l~~~~l~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~   83 (510)
T PRK09700          5 YISMAGIGKSFGPVHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG   83 (510)
T ss_pred             eEEEeeeEEEcCCeEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence            5789999999987665  999999999 99999999999999999999 776421                   1 1134


Q ss_pred             eecCCCC--CCccH----------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          383 YLPAKNH--PRLPW----------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       383 ~vp~~~~--~~l~~----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      |+|+...  ..+++                            +..++..+|+.+..++.+++|||||+ |+.++++++.+
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~  163 (510)
T PRK09700         84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD  163 (510)
T ss_pred             EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence            6777531  11111                            12345667777777889999999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|||+.....+.. ++..+++.|.|+|++||+.+ +..+|++++.+.+|++.+.
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~  226 (510)
T PRK09700        164 AKVIIMDEPTSSLTNKEVDYLFL-IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS  226 (510)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence            99999999999999999999999 55566767889999999987 5679999999999987653

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.92  E-value=7.1e-24  Score=235.46  Aligned_cols=168  Identities=20%  Similarity=0.230  Sum_probs=134.0

Q ss_pred             CCCcEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCCCC
Q 006974          323 ENSEMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKNHP  390 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~~~  390 (623)
                      |+.+++++|++++|++. .+  +++|.+.+| +.++|+||||+|||||||+| |.+...+      +  ...|.+|....
T Consensus       318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g-~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~  396 (530)
T COG0488         318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRG-DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE  396 (530)
T ss_pred             CCeeEEEeccccccCCCceeecCceEEecCC-CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence            44678999999999664 44  999999999 99999999999999999999 5554331      0  11355554311


Q ss_pred             Cc---cH---------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974          391 RL---PW---------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV  450 (623)
Q Consensus       391 ~l---~~---------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~  450 (623)
                      ..   ++               +...+.+++.. +...+++++||||+| |+.++..++.+|++||||||||+||+.+..
T Consensus       397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~  476 (530)
T COG0488         397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE  476 (530)
T ss_pred             cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHH
Confidence            01   12               22345666653 567899999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974          451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE  496 (623)
Q Consensus       451 ~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~  496 (623)
                      +|..++.+|    .+|||+||||.+ +..+|++++.+.+ .+....+
T Consensus       477 aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g  518 (530)
T COG0488         477 ALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEG  518 (530)
T ss_pred             HHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCC
Confidence            999988887    899999999998 6789999999988 5555544

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.8e-24  Score=218.60  Aligned_cols=166  Identities=17%  Similarity=0.210  Sum_probs=129.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--hh-----------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--LM-----------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~~-----------------------  377 (623)
                      +++++||+++|++..+  +++|++.+| ++++|+|||||||||||+++ |+..  +.                       
T Consensus         5 ~l~~~~l~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14239          5 ILQVSDLSVYYNKKKALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD   83 (252)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence            5789999999987655  999999999 99999999999999999999 6632  10                       


Q ss_pred             -hhhceeecCCCCC-CccHHHHH----------------------HHHcCC----chhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..+..+++                      +..++.    .+..++.+.+||+|++ |+++++++
T Consensus        84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14239         84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL  163 (252)
T ss_pred             hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence             1123466766421 12333332                      223332    1235678899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14239        164 ATSPKIILLDEPTSALDPISAGKIEET-LLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEY  228 (252)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHH-HHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999984 445554 589999999987 6789999999999998754

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.92  E-value=2.6e-24  Score=228.17  Aligned_cols=168  Identities=16%  Similarity=0.148  Sum_probs=133.6

Q ss_pred             CcEEEceeeeecCC-------------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------
Q 006974          325 SEMTVGSLSKGISD-------------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-------------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------  377 (623)
                      ..++++||++.|+.             ..+  ++||++.+| ++++|+|+||||||||+|+| |++.+-           
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i   85 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL   85 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence            35789999999962             223  999999999 99999999999999999999 776421           


Q ss_pred             -----------hhhceeecCCCC----CCccHHH-----------------------HHHHHcCCc-hhhhcccccccHH
Q 006974          378 -----------SKAGLYLPAKNH----PRLPWFD-----------------------LILADIGDH-QSLEQNLSTFSGH  418 (623)
Q Consensus       378 -----------a~~G~~vp~~~~----~~l~~~d-----------------------~i~~~ig~~-~~~~~~~stfS~g  418 (623)
                                 .....|+|++..    ..+.+.+                       .++..+|+. +..++.++.||||
T Consensus        86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG  165 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG  165 (331)
T ss_pred             CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence                       112357887641    1222222                       235566763 4578999999999


Q ss_pred             HH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          419 IS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       419 ~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      |+ |+++|++++.+|++||+||||+|||+..+..+.. ++..+.+ .+.|+|++|||+++ ..+|+++.++.+|+++..
T Consensus       166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~  243 (331)
T PRK15079        166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL  243 (331)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99 8999999999999999999999999999999999 4555655 48899999999985 468999999999998754

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.9e-24  Score=217.91  Aligned_cols=166  Identities=17%  Similarity=0.143  Sum_probs=130.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------hhhh
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------MSKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------------~a~~  380 (623)
                      .++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |++.+                      ..+.
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   80 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN   80 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence            3678999999987555  999999999 99999999999999999999 76521                      0112


Q ss_pred             ceeecCCCCC-CccH-----------------------HHHHHHHcCCc----hhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHP-RLPW-----------------------FDLILADIGDH----QSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~-~l~~-----------------------~d~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..|+|+.... ..++                       +..++..+|+.    +..++.++.||+|++ |++++++++.+
T Consensus        81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  160 (246)
T PRK14269         81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK  160 (246)
T ss_pred             EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            3467776411 0111                       12345566663    345678899999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       161 p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  222 (246)
T PRK14269        161 PKLLLLDEPTSALDPISSGVIEELLK-ELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEF  222 (246)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHH-HHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence            99999999999999999999988544 4554 789999999988 6679999999999998754

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.4e-24  Score=220.24  Aligned_cols=167  Identities=17%  Similarity=0.219  Sum_probs=131.3

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h-------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~-------------------  377 (623)
                      .+++++||+++|+++.+  ++||++.+| ++++|+||||||||||||++ |+..+     .                   
T Consensus        19 ~~l~~~nl~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   97 (267)
T PRK14237         19 IALSTKDLHVYYGKKEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY   97 (267)
T ss_pred             eEEEEeeEEEEECCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence            46789999999987665  999999999 99999999999999999999 77631     0                   


Q ss_pred             --hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974          378 --SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 --a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                        .+...|+|+.... ..++.++                      ++..+++.    +.+++.+.+||+|++ |++++++
T Consensus        98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara  177 (267)
T PRK14237         98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA  177 (267)
T ss_pred             HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence              1123567775311 0122222                      23344442    346788899999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+... +..+.+ +.++|++||+.+ +..+||++..+.+|++...
T Consensus       178 l~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~  243 (267)
T PRK14237        178 IAVKPDILLMDEPASALDPISTMQLEET-MFELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY  243 (267)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence            9999999999999999999999999994 455554 689999999987 5689999999999998754

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=1.4e-24  Score=214.36  Aligned_cols=155  Identities=19%  Similarity=0.204  Sum_probs=122.5

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp  385 (623)
                      ++++|++++|++..+  ++||++.+| ++++|+||||||||||++++ |+..+.                  .+...|+|
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~   80 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG   80 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence            678999999987665  999999999 99999999999999999999 665321                  11123666


Q ss_pred             CCCC--CCccH----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          386 AKNH--PRLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       386 ~~~~--~~l~~----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      +...  ...++                ++.++..+++.+..++.+.+||+|++ |++++++++.+|+++||||||+|+|+
T Consensus        81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~  160 (200)
T PRK13540         81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE  160 (200)
T ss_pred             cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence            5431  11222                23345566776667888899999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD  483 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~  483 (623)
                      .....+...+. .+++.+.++|++||+.+...-||..
T Consensus       161 ~~~~~l~~~l~-~~~~~~~tiii~sh~~~~~~~~d~~  196 (200)
T PRK13540        161 LSLLTIITKIQ-EHRAKGGAVLLTSHQDLPLNKADYE  196 (200)
T ss_pred             HHHHHHHHHHH-HHHHcCCEEEEEeCCchhccccchh
Confidence            99999999555 4566688999999998866666643

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.92  E-value=1.3e-24  Score=214.65  Aligned_cols=158  Identities=22%  Similarity=0.256  Sum_probs=120.3

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhhh-------------------h-hc
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLMS-------------------K-AG  381 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~a-------------------~-~G  381 (623)
                      ++++|++++|++..+  ++||++.+| ++++|+||||||||||+|++ |+.  .+.+                   + ..
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI   79 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence            357899999987555  999999999 99999999999999999999 552  1100                   0 12


Q ss_pred             eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006974          382 LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL  460 (623)
Q Consensus       382 ~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l  460 (623)
                      .|+|+.. ..++.       +-..+.+....+.||+||+ |++++++++.+|+++||||||+|+|+.....+...+. .+
T Consensus        80 ~~v~q~~-~~~~~-------~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~-~~  150 (200)
T cd03217          80 FLAFQYP-PEIPG-------VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN-KL  150 (200)
T ss_pred             EEeecCh-hhccC-------ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HH
Confidence            2344432 11110       0011222334468999999 7999999999999999999999999999999998554 46


Q ss_pred             hcCCcEEEEEcCchhHHh--hccccceeeCceEEEe
Q 006974          461 RDRVGLAVVTTHYADLSC--LKDKDTRFENAATEFS  494 (623)
Q Consensus       461 ~~~~~~vii~TH~~~l~~--~~~~~~~i~~g~~~~~  494 (623)
                      .+.+.|+|++||+.+...  +|++++.+.+|.+...
T Consensus       151 ~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~  186 (200)
T cd03217         151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS  186 (200)
T ss_pred             HHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence            666889999999998655  7999999999988654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.6e-24  Score=217.83  Aligned_cols=166  Identities=17%  Similarity=0.164  Sum_probs=129.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M--------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~--------------------  377 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||+||||||++| |+..+     .                    
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~   81 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE   81 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence            4789999999987655  999999999 99999999999999999999 76531     0                    


Q ss_pred             -hhhceeecCCCC-CCccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~-~~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+... ...+..+++                      +..+|+.    ...++.+.+||+||+ |+++++++
T Consensus        82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al  161 (250)
T PRK14262         82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL  161 (250)
T ss_pred             hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence             122346666531 012222222                      2333432    235778899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~  226 (250)
T PRK14262        162 AVEPEVILLDEPTSALDPIATQRIEKLLE-ELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEY  226 (250)
T ss_pred             hCCCCEEEEeCCccccCHHHHHHHHHHHH-HHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999998554 4555 689999999988 6789999999999998754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.9e-24  Score=217.85  Aligned_cols=167  Identities=20%  Similarity=0.255  Sum_probs=129.4

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--hh----------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--LM----------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~~----------------------  377 (623)
                      -+++++||++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..  +.                      
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14255          4 KIITSSDVHLFYGKFEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV   82 (252)
T ss_pred             ceEEEEeEEEEECCeeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence            46889999999987655  999999999 99999999999999999999 7642  10                      


Q ss_pred             --hhhceeecCCCCC-CccHHHHH----------------------HHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974          378 --SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 --a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                        .+...|+|+.... ..++.+++                      +..++.    .+..++.+.+||+||+ |++++++
T Consensus        83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lara  162 (252)
T PRK14255         83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARV  162 (252)
T ss_pred             HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHH
Confidence              0113466765311 11222222                      222332    2345678899999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++..+
T Consensus       163 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14255        163 LAVKPDVILLDEPTSALDPISSTQIENM-LLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEF  228 (252)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999994 444555 479999999988 5678999999999998765

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.92  E-value=2.5e-24  Score=207.44  Aligned_cols=150  Identities=21%  Similarity=0.305  Sum_probs=108.5

Q ss_pred             EEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------H
Q 006974          327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------F  395 (623)
Q Consensus       327 l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~-------~  395 (623)
                      ++++|+++.|++.  .+  ++||++.+| ++++|+||||+|||||+|++        +|...|..|...+..       .
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i--------~G~~~~~~G~i~~~g~~~~~~~~   71 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLL--------LRLYDPTSGEILIDGVDLRDLDL   71 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCC-CEEEEECCCCCCHHHHHHHH--------HcCCCCCCCEEEECCEEhhhcCH
Confidence            3578999999764  34  999999999 99999999999999999999        333333322110000       0


Q ss_pred             HHHHHHcCC--------chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 006974          396 DLILADIGD--------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL  466 (623)
Q Consensus       396 d~i~~~ig~--------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~  466 (623)
                      ......++.        ...+..++  ||+||+ |+.++++++.+|+++||||||+|+|+.....+.. ++..+.+ +.+
T Consensus        72 ~~~~~~i~~~~~~~~~~~~t~~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~t  147 (171)
T cd03228          72 ESLRKNIAYVPQDPFLFSGTIRENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK-GKT  147 (171)
T ss_pred             HHHHhhEEEEcCCchhccchHHHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC-CCE
Confidence            000001110        00111111  999999 7999999999999999999999999999999999 4555554 689


Q ss_pred             EEEEcCchhHHhhccccceeeCc
Q 006974          467 AVVTTHYADLSCLKDKDTRFENA  489 (623)
Q Consensus       467 vii~TH~~~l~~~~~~~~~i~~g  489 (623)
                      +|++||+.+....|++...+.+|
T Consensus       148 ii~~sh~~~~~~~~d~~~~l~~g  170 (171)
T cd03228         148 VIVIAHRLSTIRDADRIIVLDDG  170 (171)
T ss_pred             EEEEecCHHHHHhCCEEEEEcCC
Confidence            99999998855459988888776

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.92  E-value=3.9e-24  Score=210.31  Aligned_cols=158  Identities=25%  Similarity=0.328  Sum_probs=122.5

Q ss_pred             cEEEceeeeecCC------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhhh----------------
Q 006974          326 EMTVGSLSKGISD------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLMS----------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~a----------------  378 (623)
                      .++++||++.|++      ..+  ++||++.+| ++++|+||||||||||+|++ |+.  .+.+                
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~   81 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR   81 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence            4789999999975      444  999999999 99999999999999999999 666  4311                


Q ss_pred             hhceeecCCCC--CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974          379 KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS  455 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a  455 (623)
                      ....|+|+...  ..+++.+++...        .....||+||+ |+.++++++.+|+++||||||+|||+.....+.. 
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~~i~~~--------~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~-  152 (194)
T cd03213          82 KIIGYVPQDDILHPTLTVRETLMFA--------AKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-  152 (194)
T ss_pred             heEEEccCcccCCCCCcHHHHHHHH--------HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-
Confidence            11235555431  123344443211        01128999999 7999999999999999999999999999999998 


Q ss_pred             HHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEE
Q 006974          456 ILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       456 ll~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~  493 (623)
                      ++..+.+++.|+|++||+.+  +..+||++..+.+|++..
T Consensus       153 ~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~  192 (194)
T cd03213         153 LLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY  192 (194)
T ss_pred             HHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence            45556666889999999974  567899999999998754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.92  E-value=1.7e-24  Score=218.62  Aligned_cols=165  Identities=15%  Similarity=0.168  Sum_probs=125.3

Q ss_pred             EEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          327 MTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      ++++|++++|++.  .+  +++|++.+| ++++|+||||||||||+|++ |+..+.                   .+...
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            3578999999764  34  999999999 99999999999999999999 665431                   11234


Q ss_pred             eecCCCC-CCccHHHHH------------------------HHHc--CCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNH-PRLPWFDLI------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~-~~l~~~d~i------------------------~~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+... ...++.+++                        +..+  |.....+..+.+||+|++ |+.++++++.+|++
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            6666531 011222222                        1111  223334567889999999 79999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||||+|||+.....+.. ++..+.+ +.++|++||+.+....|++++.+.+|++...
T Consensus       160 llLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~  217 (234)
T cd03251         160 LILDEATSALDTESERLVQA-ALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVER  217 (234)
T ss_pred             EEEeCccccCCHHHHHHHHH-HHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEeee
Confidence            99999999999999999998 5555554 7899999999885556999999999988643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.92  E-value=2.7e-24  Score=219.09  Aligned_cols=165  Identities=22%  Similarity=0.236  Sum_probs=124.6

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh-------------------h-hhc
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------S-KAG  381 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~-------------------a-~~G  381 (623)
                      ++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |+.  .+.                   . ...
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI   80 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence            678999999987655  999999999 99999999999999999999 774  221                   0 112


Q ss_pred             eeecCCCCCCccH-------------------------------HHHHHHHcCCc-hhhhcccc-cccHHHH-HHHHHHH
Q 006974          382 LYLPAKNHPRLPW-------------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE  427 (623)
Q Consensus       382 ~~vp~~~~~~l~~-------------------------------~d~i~~~ig~~-~~~~~~~s-tfS~g~~-rl~~~~~  427 (623)
                      .|+|+... .++.                               ++.++..+++. +..++.++ .||+||+ |++++++
T Consensus        81 ~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara  159 (248)
T PRK09580         81 FMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM  159 (248)
T ss_pred             EEEecCch-hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence            35555431 1110                               11223333442 23344454 7999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh-h-ccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-L-KDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~-~-~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+.. ++..+++.++|+|++||+.++.. + ++++..+.+|++...
T Consensus       160 l~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~  227 (248)
T PRK09580        160 AVLEPELCILDESDSGLDIDALKIVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS  227 (248)
T ss_pred             HHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence            999999999999999999999999998 55567777889999999988554 4 788888999987654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.92  E-value=2.9e-24  Score=221.78  Aligned_cols=168  Identities=16%  Similarity=0.153  Sum_probs=132.5

Q ss_pred             cEEEceeeeecCC---------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------
Q 006974          326 EMTVGSLSKGISD---------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~---------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------  377 (623)
                      +++++||++.|++         +.+  ++||++.+| ++++|+||||||||||||+| |+..+.                
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence            4788999999973         444  999999999 99999999999999999999 665321                


Q ss_pred             ------hhhceeecCCCCC----CccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHH
Q 006974          378 ------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       378 ------a~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~  423 (623)
                            .+...|+|+....    ....                      ++.++..+|+. +..++.+..||+||+ |++
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence                  1123467765311    1111                      22345666775 567889999999999 899


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  233 (268)
T PRK10419        162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET  233 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence            9999999999999999999999999999999555433344789999999988 5579999999999988654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.92  E-value=4e-24  Score=209.89  Aligned_cols=158  Identities=20%  Similarity=0.228  Sum_probs=121.7

Q ss_pred             cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h---------------hhhc
Q 006974          326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M---------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~---------------a~~G  381 (623)
                      .++++|+++.|++    ..+  ++||++.+| ++++|+||||||||||||++ |+..+  .               .+..
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i   81 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST   81 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence            4789999999974    344  999999999 99999999999999999999 55321  0               1112


Q ss_pred             eeecCCCC--CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974          382 LYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       382 ~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~  458 (623)
                      .|+|+...  ..+++.+++....    .    ...||+||+ |+.++++++.+|+++|+|||++|+|+.....+.. ++.
T Consensus        82 ~~~~q~~~~~~~~tv~~~l~~~~----~----~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~-~l~  152 (192)
T cd03232          82 GYVEQQDVHSPNLTVREALRFSA----L----LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR-FLK  152 (192)
T ss_pred             EEecccCccccCCcHHHHHHHHH----H----HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH-HHH
Confidence            35555431  1234444442110    0    118999999 7999999999999999999999999999999999 455


Q ss_pred             HHhcCCcEEEEEcCchh--HHhhccccceeeC-ceEEE
Q 006974          459 YLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEF  493 (623)
Q Consensus       459 ~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~-g~~~~  493 (623)
                      .+.+.+.|+|++||+.+  +..+||+++.+.+ |++.+
T Consensus       153 ~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~  190 (192)
T cd03232         153 KLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY  190 (192)
T ss_pred             HHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence            56666889999999986  3688999999988 88765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.92  E-value=2.8e-24  Score=217.60  Aligned_cols=166  Identities=24%  Similarity=0.257  Sum_probs=132.7

Q ss_pred             EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------hhceeecCC
Q 006974          327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------KAGLYLPAK  387 (623)
Q Consensus       327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------~~G~~vp~~  387 (623)
                      +.++|+++.|++..+ ++||++.+| ++++|+||||+|||||++++ |+..+.+                 +...|+|+.
T Consensus         1 l~~~~l~~~~~~~~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~   79 (235)
T cd03299           1 LKVENLSKDWKEFKLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN   79 (235)
T ss_pred             CeeEeEEEEeCCceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence            357899999976544 999999999 99999999999999999999 6654321                 122466665


Q ss_pred             CCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          388 NHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       388 ~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                      ...  .+++                     +..++..+|+...+++.+.+||+||+ |++++++++.+|+++||||||+|
T Consensus        80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g  159 (235)
T cd03299          80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA  159 (235)
T ss_pred             CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence            311  1111                     12345667888888999999999999 89999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          444 TDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+.....+...+.+ +.. .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       160 LD~~~~~~l~~~l~~-~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~  211 (235)
T cd03299         160 LDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV  211 (235)
T ss_pred             CCHHHHHHHHHHHHH-HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999995554 544 4889999999987 5679999999999988654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.92  E-value=1.8e-24  Score=217.36  Aligned_cols=164  Identities=12%  Similarity=0.151  Sum_probs=126.9

Q ss_pred             CCcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------h
Q 006974          324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------S  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a  378 (623)
                      .+.++++|+++.|++   ..+  +++|++.+| ++++|+||||||||||++++ |+..+.                   .
T Consensus         9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             CceEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            357899999999974   234  999999999 99999999999999999999 665421                   1


Q ss_pred             hhceeecCCCCC-CccHH------------------------HHHHHHc--CCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          379 KAGLYLPAKNHP-RLPWF------------------------DLILADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       379 ~~G~~vp~~~~~-~l~~~------------------------d~i~~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      +...|+|+.... ..++.                        ..++..+  |....++..+..||+||+ |+.++++++.
T Consensus        88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~  167 (226)
T cd03248          88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR  167 (226)
T ss_pred             hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            123466665310 00111                        1223334  556667888999999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA  490 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~  490 (623)
                      +|+++||||||+|||+.....+...+. .+.+ +.|+|++||+.+....|++++.+.+|+
T Consensus       168 ~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~  225 (226)
T cd03248         168 NPQVLILDEATSALDAESEQQVQQALY-DWPE-RRTVLVIAHRLSTVERADQILVLDGGR  225 (226)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHH-HHcC-CCEEEEEECCHHHHHhCCEEEEecCCc
Confidence            999999999999999999999999555 4555 589999999988656699988887764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=4.6e-24  Score=208.84  Aligned_cols=167  Identities=25%  Similarity=0.339  Sum_probs=137.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc-e
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG-L  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G-~  382 (623)
                      +++++||+..||...+  ++||++.+| ++++|+||||+|||||||+| |++.+.                   ++.| .
T Consensus         3 mL~v~~l~~~YG~~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~   81 (237)
T COG0410           3 MLEVENLSAGYGKIQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA   81 (237)
T ss_pred             ceeEEeEeecccceeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence            5789999999998776  999999999 99999999999999999999 777542                   2344 4


Q ss_pred             eecCCC--CCCccHH--------------------HHHHHHcC-CchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          383 YLPAKN--HPRLPWF--------------------DLILADIG-DHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       383 ~vp~~~--~~~l~~~--------------------d~i~~~ig-~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      |||+..  ++.+++.                    +.+|+.|- +.+..++...+||||++ .++.+++++.+|+++|||
T Consensus        82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD  161 (237)
T COG0410          82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD  161 (237)
T ss_pred             eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence            788764  2333333                    33444443 45667889999999999 588889999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLS-CLKDKDTRFENAATEFS  494 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~  494 (623)
                      ||+.||-|.-...|.. ++..+++. +.||++|.++...+ .++|+.+++.+|.+.+.
T Consensus       162 EPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~  218 (237)
T COG0410         162 EPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS  218 (237)
T ss_pred             CCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEe
Confidence            9999999999999999 56667755 66999999998855 69999999999999887

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.91  E-value=2.7e-24  Score=230.02  Aligned_cols=159  Identities=16%  Similarity=0.122  Sum_probs=128.1

Q ss_pred             ecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecCCC
Q 006974          335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKN  388 (623)
Q Consensus       335 ~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~~~  388 (623)
                      .|++..+  ++||++.+| ++++|+||||||||||||+| |++.+.                       .+...|+|+..
T Consensus         2 ~~~~~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~   80 (363)
T TIGR01186         2 KTGGKKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF   80 (363)
T ss_pred             ccCCceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence            3444444  999999999 99999999999999999999 776421                       12345788764


Q ss_pred             CC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          389 HP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       389 ~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      ..  .+++.                     ..++..+|+....++.+++|||||+ |+.++++++.+|+++||||||++|
T Consensus        81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL  160 (363)
T TIGR01186        81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL  160 (363)
T ss_pred             cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            21  11221                     2346677888889999999999999 899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          445 DPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||..+..+...+.+...+.+.|+|++||+++ ...+|+++..+.+|++...
T Consensus       161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~  211 (363)
T TIGR01186       161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV  211 (363)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence            9999999999655433445889999999988 5689999999999988644

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.91  E-value=3.3e-24  Score=214.67  Aligned_cols=165  Identities=16%  Similarity=0.143  Sum_probs=127.8

Q ss_pred             cEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          326 EMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      .++++|++++|++  +.+  ++||++.+| ++++|+|||||||||||+++ |+..+.                   .+..
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI   80 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence            4789999999964  234  999999999 99999999999999999999 664321                   1223


Q ss_pred             eeecCCCCCCc--cHH--------------HHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHPRL--PWF--------------DLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~~l--~~~--------------d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .|+|+... .+  ++.              ...+..+++.+.+           +..++.||+||+ |+.++++++.+|+
T Consensus        81 ~~~~q~~~-l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  159 (221)
T cd03244          81 SIIPQDPV-LFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK  159 (221)
T ss_pred             EEECCCCc-cccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            46676542 11  112              2233445555544           357899999999 7999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|||+.....+...+ ..+.+ +.|+|++||+.+....|++++.+.+|++...
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l-~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~  218 (221)
T cd03244         160 ILVLDEATASVDPETDALIQKTI-REAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEF  218 (221)
T ss_pred             EEEEeCccccCCHHHHHHHHHHH-HHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence            99999999999999999999954 44554 5899999999886566999999999987643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.5e-24  Score=216.87  Aligned_cols=166  Identities=19%  Similarity=0.246  Sum_probs=129.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M--------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~--------------------  377 (623)
                      .++++|+++.|++..+  ++||++.+| ++++|+||||||||||||+| |+..+     .                    
T Consensus         4 ~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (251)
T PRK14270          4 KMESKNLNLWYGEKQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE   82 (251)
T ss_pred             EEEEEEeEEEECCeeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence            4788999999987555  999999999 99999999999999999999 76532     0                    


Q ss_pred             -hhhceeecCCCCC-CccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..+..+                      .++..+|+    .+..++.+..||+||+ |+++++++
T Consensus        83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  162 (251)
T PRK14270         83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI  162 (251)
T ss_pred             HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence             1113466765410 112222                      22334443    2346778899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.+|++...
T Consensus       163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~-~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~  227 (251)
T PRK14270        163 AVKPDVILMDEPTSALDPISTLKIEDLMV-ELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF  227 (251)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence            99999999999999999999999998544 4555 489999999987 5788999999999998754

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.4e-24  Score=218.39  Aligned_cols=166  Identities=19%  Similarity=0.245  Sum_probs=128.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h-------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M-------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~-------------------  377 (623)
                      .++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |+..+      -                   
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~   82 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA   82 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence            4789999999987555  999999999 99999999999999999999 77642      0                   


Q ss_pred             -hhhceeecCCCC--CCccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974          378 -SKAGLYLPAKNH--PRLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 -a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                       .+...|+|+...  ..+++.+                      .++..+|+    .+..++.+.+||+||+ |++++++
T Consensus        83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  162 (258)
T PRK14241         83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA  162 (258)
T ss_pred             HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence             011235665431  1122222                      22334454    2456788899999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee------CceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE------NAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~------~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.      +|++...
T Consensus       163 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~  234 (258)
T PRK14241        163 IAVEPDVLLMDEPCSALDPISTLAIEDL-INELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI  234 (258)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence            9999999999999999999999999984 445554 589999999987 567999998886      6777644

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.7e-24  Score=225.85  Aligned_cols=167  Identities=12%  Similarity=0.133  Sum_probs=132.3

Q ss_pred             cEEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----h-----------------
Q 006974          326 EMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----M-----------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----~-----------------  377 (623)
                      .++++||++.|+    ...+  ++||++.+| ++++|+|+||||||||+|+| |+...    .                 
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            478999999993    3333  999999999 99999999999999999999 77631    0                 


Q ss_pred             ------hhhceeecCCCCCC----ccH---------------------------HHHHHHHcCCch---hhhcccccccH
Q 006974          378 ------SKAGLYLPAKNHPR----LPW---------------------------FDLILADIGDHQ---SLEQNLSTFSG  417 (623)
Q Consensus       378 ------a~~G~~vp~~~~~~----l~~---------------------------~d~i~~~ig~~~---~~~~~~stfS~  417 (623)
                            .+...|+|++....    +.+                           +..++..+|+.+   ..++.++.|||
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence                  01235788864211    111                           123455667653   35788999999


Q ss_pred             HHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       418 g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+ |++++++++.+|++||+||||+|||+..+..+.. ++..+.+ .|.|+|++|||+++ ..+||++.++.+|+++..
T Consensus       162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~  240 (330)
T PRK15093        162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET  240 (330)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            999 8999999999999999999999999999999999 4555665 48899999999884 579999999999998754

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.1e-24  Score=217.06  Aligned_cols=166  Identities=17%  Similarity=0.195  Sum_probs=129.3

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      .++++||+++|++..+  ++||++.+| ++++|+|||||||||||++| |++.+-                         
T Consensus         4 ~l~~~~l~~~~~~~~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   82 (251)
T PRK14249          4 KIKIRGVNFFYHKHQVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN   82 (251)
T ss_pred             eEEEEEEEEEECCeeEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence            5789999999987655  999999999 99999999999999999999 775432                         


Q ss_pred             -hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..++.++                      ++..+++.    +..++.+.+||+||+ |+++++++
T Consensus        83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  162 (251)
T PRK14249         83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL  162 (251)
T ss_pred             hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence             0113466665311 0112221                      12233432    345788899999999 79999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+... +..+. ++.|+|++||+.+ +..+|+++..+.+|.+...
T Consensus       163 ~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14249        163 AIEPEVILMDEPCSALDPVSTMRIEEL-MQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY  227 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence            999999999999999999999999994 44555 4789999999987 5678999999999988654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.91  E-value=2.6e-24  Score=217.90  Aligned_cols=165  Identities=15%  Similarity=0.117  Sum_probs=124.1

Q ss_pred             EEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          327 MTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       327 l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      ++++|+++.|++   ..+  ++||++.+| ++++|+|||||||||||++| |+..+.                   .+..
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI   79 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence            357899999964   233  899999999 99999999999999999999 665421                   1123


Q ss_pred             eeecCCCCC-CccHHHHH---------------HHHcCC-----------chhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~-~l~~~d~i---------------~~~ig~-----------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .|+|+.... ..++.+++               ....+.           ....+..+..||+||+ |+.++++++.+|+
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~  159 (238)
T cd03249          80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK  159 (238)
T ss_pred             EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence            466665310 01222211               111122           2233456789999999 7999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|||+.....+... +..+. ++.++|++||+.+...+||+++.+.+|.+..+
T Consensus       160 llllDEP~~gLD~~~~~~l~~~-l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~  218 (238)
T cd03249         160 ILLLDEATSALDAESEKLVQEA-LDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQ  218 (238)
T ss_pred             EEEEeCccccCCHHHHHHHHHH-HHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence            9999999999999999999994 44455 68899999999886568999999999988654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3.9e-24  Score=221.80  Aligned_cols=167  Identities=15%  Similarity=0.111  Sum_probs=133.1

Q ss_pred             cEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      .++++||++.|++.   .+  ++||++.+| ++++|+||||||||||+++| |+..+.                   .+.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK   82 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence            47899999999742   23  999999999 99999999999999999999 665421                   112


Q ss_pred             ceeecCCCC---CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          381 GLYLPAKNH---PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       381 G~~vp~~~~---~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ..|+|+...   ....+.                     +.++..+|+.+..++.+..||+||+ |+.++++++.+|+++
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll  162 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII  162 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            346777531   111222                     2344556777777889999999999 799999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+... +..+.+ .|.|+|++||+.+....|++++.+.+|++...
T Consensus       163 llDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~  221 (277)
T PRK13642        163 ILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKE  221 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999994 445655 48899999999986667999999999988654

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.9e-24  Score=219.01  Aligned_cols=167  Identities=20%  Similarity=0.276  Sum_probs=131.3

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------  377 (623)
                      -.+.++||+++|++..+  ++||++.+| ++++|+||||+|||||||+| |+..+.                        
T Consensus        20 ~~l~i~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   98 (276)
T PRK14271         20 PAMAAVNLTLGFAGKTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE   98 (276)
T ss_pred             cEEEEeeEEEEECCEEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence            36789999999987665  999999999 99999999999999999999 776420                        


Q ss_pred             -hhhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .....|+|+.... ..+.++                      .++..+|+.    +.+++.+.+||+||+ |+++++++
T Consensus        99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral  178 (276)
T PRK14271         99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL  178 (276)
T ss_pred             HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence             1122467765311 012222                      223444543    235677889999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       179 ~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~  243 (276)
T PRK14271        179 AVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEE  243 (276)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999998 4555555 489999999988 5789999999999988654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.91  E-value=2.1e-24  Score=212.75  Aligned_cols=147  Identities=23%  Similarity=0.248  Sum_probs=117.0

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp  385 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |+..+.                  .+...|+|
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG   79 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence            367899999987665  999999999 99999999999999999999 765321                  01224666


Q ss_pred             CCCC--CCccH-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974          386 AKNH--PRLPW-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD  445 (623)
Q Consensus       386 ~~~~--~~l~~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD  445 (623)
                      +...  ..+++                 +..++..+|+.+..++.+.+||+||+ |++++++++.+|+++||||||+|+|
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD  159 (198)
T TIGR01189        80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD  159 (198)
T ss_pred             cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence            6431  11122                 22345667787778899999999999 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          446 PSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      +.....+...+.+ +.+.+.|+|++||+..
T Consensus       160 ~~~~~~l~~~l~~-~~~~~~tii~~sH~~~  188 (198)
T TIGR01189       160 KAGVALLAGLLRA-HLARGGIVLLTTHQDL  188 (198)
T ss_pred             HHHHHHHHHHHHH-HHhCCCEEEEEEcccc
Confidence            9999999995554 5666889999999863

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=9e-24  Score=215.53  Aligned_cols=166  Identities=17%  Similarity=0.247  Sum_probs=129.3

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      .++++|+++.|+++.+  ++||++.+| ++++|+||||||||||+|+| |+..+-                         
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   81 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL   81 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence            4788999999987655  999999999 99999999999999999999 765421                         


Q ss_pred             hhhceeecCCCCC-CccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHhc
Q 006974          378 SKAGLYLPAKNHP-RLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       378 a~~G~~vp~~~~~-~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      .+...|+|+.... ..+..+++                      +..+|..    +..+..+.+||+|++ |+.++++++
T Consensus        82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  161 (249)
T PRK14253         82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA  161 (249)
T ss_pred             HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence            0112466665311 11222222                      2223332    345677889999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|+|+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       162 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~  225 (249)
T PRK14253        162 MEPDVILMDEPTSALDPIATHKIEE-LMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEH  225 (249)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999 5555665 489999999988 5778999999999998754

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.9e-24  Score=216.70  Aligned_cols=166  Identities=18%  Similarity=0.260  Sum_probs=129.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      .++++||++.|++..+  ++||++.+| ++++|+||||+|||||+|+| |+..+-                         
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T PRK14272          4 LLSAQDVNIYYGDKQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA   82 (252)
T ss_pred             EEEEeeeEEEECCEEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence            4788999999987665  999999999 99999999999999999999 765321                         


Q ss_pred             -hhhceeecCCCC--CCccHHHHHH----------------------HHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974          378 -SKAGLYLPAKNH--PRLPWFDLIL----------------------ADIGD----HQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 -a~~G~~vp~~~~--~~l~~~d~i~----------------------~~ig~----~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                       .+...|+|+...  ..+++.+++.                      ..++.    .+..++.+++||+||+ |++++++
T Consensus        83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  162 (252)
T PRK14272         83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA  162 (252)
T ss_pred             hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence             011236666542  1123333321                      12221    1234677899999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|+|+.....+.. +++.+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       163 l~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14272        163 LAVEPEILLMDEPTSALDPASTARIED-LMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH  228 (252)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999 4555654 689999999988 5678999999999998754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=7.4e-24  Score=216.40  Aligned_cols=166  Identities=19%  Similarity=0.274  Sum_probs=129.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M--------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~--------------------  377 (623)
                      .++++|++++|++..+  ++||++.+| ++++|+||||||||||+|++ |+...     .                    
T Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~   82 (251)
T PRK14251          4 IISAKDVHLSYGNYEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE   82 (251)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence            4789999999987655  899999999 99999999999999999999 77641     0                    


Q ss_pred             -hhhceeecCCCCC-CccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..++.+                      .++..+++.    ...++.+.+||+||+ |+++++++
T Consensus        83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral  162 (251)
T PRK14251         83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL  162 (251)
T ss_pred             hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence             0112356665310 112222                      223344542    345778899999999 79999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++|||||++|||+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14251        163 AVRPKVVLLDEPTSALDPISSSEIEETLM-ELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA  227 (251)
T ss_pred             hcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence            99999999999999999999999998544 4554 589999999987 5678999999999998654

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=3.1e-24  Score=235.52  Aligned_cols=167  Identities=15%  Similarity=0.100  Sum_probs=131.1

Q ss_pred             cEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hc--eeecCCC--CCC
Q 006974          326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKN--HPR  391 (623)
Q Consensus       326 ~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G--~~vp~~~--~~~  391 (623)
                      +++++||++.|++.   .+  +++|++.+| ++++|+|||||||||||+++ |++.+...    .|  .+++...  ...
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~   99 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ   99 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence            57899999999763   33  999999999 99999999999999999999 66543210    00  0011000  011


Q ss_pred             ccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974          392 LPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG  449 (623)
Q Consensus       392 l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~  449 (623)
                      +++                     ++.++..+|+.+.+++.+++|||||+ |+++|++++.+|+++||||||+|||+...
T Consensus       100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr  179 (549)
T PRK13545        100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT  179 (549)
T ss_pred             CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence            111                     12345667888888999999999999 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ..+... +..+.+.|+|+|++||+++ +..+|++++.+.+|++...
T Consensus       180 ~~Llel-L~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~  224 (549)
T PRK13545        180 KKCLDK-MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY  224 (549)
T ss_pred             HHHHHH-HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            999985 4556667889999999987 5678999999999988655

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.91  E-value=3.7e-24  Score=211.87  Aligned_cols=162  Identities=19%  Similarity=0.164  Sum_probs=121.8

Q ss_pred             EEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCC-CC
Q 006974          327 MTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNH-PR  391 (623)
Q Consensus       327 l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~-~~  391 (623)
                      ++++||++.|++.     .+  ++||++++| ++++|+|||||||||||+++ |+..+..-      ...|+|+... ..
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~   79 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN   79 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence            3678999999763     34  999999999 99999999999999999999 66544211      1146677631 01


Q ss_pred             ccHHHH--------------HHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974          392 LPWFDL--------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD  445 (623)
Q Consensus       392 l~~~d~--------------i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD  445 (623)
                      .+..++              ....+++.+.           .......||+||+ |++++++++.+|+++||||||+|||
T Consensus        80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD  159 (204)
T cd03250          80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD  159 (204)
T ss_pred             CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            122222              2222333222           3445689999999 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCc
Q 006974          446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENA  489 (623)
Q Consensus       446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g  489 (623)
                      +.....+...++..+.+.+.|+|++||+.+....|+++..+.+|
T Consensus       160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G  203 (204)
T cd03250         160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG  203 (204)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence            99999998866665555578999999998855559988888776

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=2.3e-24  Score=214.28  Aligned_cols=152  Identities=21%  Similarity=0.258  Sum_probs=123.5

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---hhceeecCCCC------------------CCccH-----
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---KAGLYLPAKNH------------------PRLPW-----  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---~~G~~vp~~~~------------------~~l~~-----  394 (623)
                      ++||++++| ++++++||||+||||+||++ |++.+.+   ..+.+.|....                  ..++.     
T Consensus        42 disf~IP~G-~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~  120 (325)
T COG4586          42 DISFEIPKG-EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLE  120 (325)
T ss_pred             eeeeecCCC-cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHH
Confidence            999999999 99999999999999999999 5554432   12223333310                  00010     


Q ss_pred             ----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 006974          395 ----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSIL  457 (623)
Q Consensus       395 ----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all  457 (623)
                                      .+.+-+.++++..+..++..||-|++ |+.+++++..+|.+|+|||||-|||...+.++...+.
T Consensus       121 v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flk  200 (325)
T COG4586         121 VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK  200 (325)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHH
Confidence                            11122345667788999999999999 8999999999999999999999999999999999777


Q ss_pred             HHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          458 QYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       458 ~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++-.+.++||+.|||+++ +..+|+++..+..|.+.|+
T Consensus       201 e~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~d  238 (325)
T COG4586         201 EYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD  238 (325)
T ss_pred             HHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeec
Confidence            777778999999999986 9999999999999999987

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.5e-24  Score=239.35  Aligned_cols=167  Identities=14%  Similarity=0.141  Sum_probs=133.8

Q ss_pred             cEEEceeeeecC---Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-h--------------------h
Q 006974          326 EMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S  378 (623)
Q Consensus       326 ~l~~~~l~~~y~---~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-~--------------------a  378 (623)
                      +++++||++.|+   +..+  ++||++.+| ++++|+||||||||||||+| |++.+ .                    .
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~  337 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA  337 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            578899999993   3334  899999999 99999999999999999999 77642 1                    0


Q ss_pred             hhceeecCCCC-----CCccH--------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHH
Q 006974          379 KAGLYLPAKNH-----PRLPW--------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       379 ~~G~~vp~~~~-----~~l~~--------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~  425 (623)
                      +.-.|+|+...     ..++.                          ++.++..+|+. +..++.+.+|||||+ |+.+|
T Consensus       338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA  417 (506)
T PRK13549        338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA  417 (506)
T ss_pred             CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence            11247777520     11111                          22345667775 467889999999999 89999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++.+|+++||||||+|||+.....+.. ++..+.++|.|||++|||.+ +..+||+++.+.+|++..+
T Consensus       418 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~  486 (506)
T PRK13549        418 KCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD  486 (506)
T ss_pred             HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999 55667777899999999987 6689999999999998654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.4e-24  Score=220.17  Aligned_cols=169  Identities=17%  Similarity=0.214  Sum_probs=130.1

Q ss_pred             CCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------h------
Q 006974          323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------M------  377 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------~------  377 (623)
                      |...++++||++.|++..+  +++|++.+| ++++|+|||||||||||++| |+..+                .      
T Consensus        36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             CCceEEEEEEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            4557899999999987655  999999999 99999999999999999999 77531                0      


Q ss_pred             ----hhhceeecCCCCC-CccHHH--------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974          378 ----SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 ----a~~G~~vp~~~~~-~l~~~d--------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                          .+...|+|+.... ...+.+                    .++..+|+.    +.+++.+++||+||+ |++++++
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra  194 (285)
T PRK14254        115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA  194 (285)
T ss_pred             hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence                0112466765310 012222                    233445542    356788999999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-Hhhccccc-eeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDT-RFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~-~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+... +..+.+. .++|++||+.+. ..+|++++ .+.+|++..+
T Consensus       195 L~~~p~lLLLDEPts~LD~~~~~~l~~~-L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~  261 (285)
T PRK14254        195 IAPDPEVILMDEPASALDPVATSKIEDL-IEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEF  261 (285)
T ss_pred             HHcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence            9999999999999999999999999985 4455553 799999999884 67899865 4688987654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.5e-24  Score=216.03  Aligned_cols=164  Identities=18%  Similarity=0.247  Sum_probs=128.3

Q ss_pred             EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h---------------------h
Q 006974          328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M---------------------S  378 (623)
Q Consensus       328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~---------------------a  378 (623)
                      +++||++.|++..+  ++||++.+| ++++|+||||||||||+|+| |+..+     .                     .
T Consensus         7 ~~~~l~~~~~~~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   85 (251)
T PRK14244          7 SVKNLNLWYGSKQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR   85 (251)
T ss_pred             EeeeEEEEECCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence            57899999987554  999999999 99999999999999999999 77531     0                     1


Q ss_pred             hhceeecCCCCCC-ccHHH-----------------------HHHHHcCCch----hhhcccccccHHHH-HHHHHHHhc
Q 006974          379 KAGLYLPAKNHPR-LPWFD-----------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       379 ~~G~~vp~~~~~~-l~~~d-----------------------~i~~~ig~~~----~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      +...|+|+..... .+..+                       .++..+|+.+    .+++.+.+||+||+ |++++++++
T Consensus        86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  165 (251)
T PRK14244         86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA  165 (251)
T ss_pred             hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence            1124777764210 01111                       2345556543    35677899999999 799999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       166 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~  229 (251)
T PRK14244        166 VKPTMLLMDEPCSALDPVATNVIEN-LIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY  229 (251)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence            9999999999999999999999988 4545554 789999999988 5678999999999998754

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.3e-24  Score=217.80  Aligned_cols=167  Identities=17%  Similarity=0.211  Sum_probs=135.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      ++.++|+++.|++...  ++++.|..| ++++++|||||||||+||+| ||..+-                    .+...
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG   80 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG   80 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence            3678899999987655  899999999 99999999999999999999 776542                    11223


Q ss_pred             eecCCC--CCCccHHHH-----------------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          383 YLPAKN--HPRLPWFDL-----------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       383 ~vp~~~--~~~l~~~d~-----------------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ||+|+.  +..++++++                       ++..+.+++..++++..||||++ |+++|++++.+|++||
T Consensus        81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL  160 (345)
T COG1118          81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL  160 (345)
T ss_pred             EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence            666653  123333333                       45566677778899999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ||||+++||..-+..|..-+.+...+.|.|++++|||.+ ...+|+++.++.+|+++-
T Consensus       161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq  218 (345)
T COG1118         161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ  218 (345)
T ss_pred             ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence            999999999999999988555544455999999999987 568999999999998764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.91  E-value=3.9e-24  Score=239.55  Aligned_cols=165  Identities=18%  Similarity=0.208  Sum_probs=131.6

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--h--------------------hhhc
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--M--------------------SKAG  381 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~--------------------a~~G  381 (623)
                      ++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |++.+  .                    .+..
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI   80 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence            678999999987655  999999999 99999999999999999999 77643  0                    0112


Q ss_pred             eeecCCCC--CCccHH-------------------------HHHHHHcCCchhh-hcccccccHHHH-HHHHHHHhcCCC
Q 006974          382 LYLPAKNH--PRLPWF-------------------------DLILADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       382 ~~vp~~~~--~~l~~~-------------------------d~i~~~ig~~~~~-~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      .|+|+...  ..+++.                         ..++..+|+.... ++.+++|||||+ |+++|++++.+|
T Consensus        81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p  160 (500)
T TIGR02633        81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA  160 (500)
T ss_pred             EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence            47777531  111121                         2344556665443 467899999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      +++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++..
T Consensus       161 ~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~  221 (500)
T TIGR02633       161 RLLILDEPSSSLTEKETEILLD-IIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA  221 (500)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence            9999999999999999999999 55566777889999999987 567999999999988754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1e-23  Score=217.80  Aligned_cols=161  Identities=16%  Similarity=0.253  Sum_probs=125.9

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h------------------
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M------------------  377 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~------------------  377 (623)
                      ..+++++||++.|++..+  ++||++.+| ++++|+|||||||||||++| |++.+     .                  
T Consensus        11 ~~~l~i~nl~~~~~~~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~   89 (269)
T PRK14259         11 NIIISLQNVTISYGTFEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP   89 (269)
T ss_pred             CceEEEEeEEEEECCEEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence            347899999999987655  999999999 99999999999999999999 76531     0                  


Q ss_pred             ---hhhceeecCCCCCCc--cHHH--------------------HHHHHcCC----chhhhcccccccHHHH-HHHHHHH
Q 006974          378 ---SKAGLYLPAKNHPRL--PWFD--------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 ---a~~G~~vp~~~~~~l--~~~d--------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                         .+...|+|+... .+  ++.+                    .++..++.    .+..++.+.+||+||+ |++++++
T Consensus        90 ~~~~~~i~~v~q~~~-l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara  168 (269)
T PRK14259         90 VEVRRRIGMVFQQPN-PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART  168 (269)
T ss_pred             HHHhhceEEEccCCc-cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence               011346776531 11  1212                    12333433    2345778899999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      ++.+|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+||++..+.+
T Consensus       169 l~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~  228 (269)
T PRK14259        169 IAIEPEVILMDEPCSALDPISTLKIEET-MHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNA  228 (269)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEec
Confidence            9999999999999999999999999994 455554 689999999987 6689999998886

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.91  E-value=4.6e-24  Score=215.80  Aligned_cols=165  Identities=16%  Similarity=0.163  Sum_probs=124.2

Q ss_pred             EEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          327 MTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      ++++|+++.|+ +..+  +++|++.+| ++++|+|||||||||||++| |+..+.                   .+...|
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~   79 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV   79 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            35789999995 3434  999999999 99999999999999999999 665421                   112346


Q ss_pred             ecCCCC-CCccHHHHH---------------HHHcCCc-----------hhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          384 LPAKNH-PRLPWFDLI---------------LADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       384 vp~~~~-~~l~~~d~i---------------~~~ig~~-----------~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      +|+... ...++.+++               +...+..           ..+++.+.+||+|++ |++++++++.+|+++
T Consensus        80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll  159 (236)
T cd03253          80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL  159 (236)
T ss_pred             ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            666531 011122211               1122222           223445679999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+... +..+.+ +.++|++||+.+....|++++.+.+|++...
T Consensus       160 llDEP~~~LD~~~~~~l~~~-l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~  216 (236)
T cd03253         160 LLDEATSALDTHTEREIQAA-LRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVER  216 (236)
T ss_pred             EEeCCcccCCHHHHHHHHHH-HHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence            99999999999999999994 455666 8899999999986566999999999988654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.4e-24  Score=240.08  Aligned_cols=166  Identities=17%  Similarity=0.172  Sum_probs=134.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                    .+...
T Consensus         4 ~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~   82 (501)
T PRK11288          4 YLSFDGIGKTFPGVKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA   82 (501)
T ss_pred             eEEEeeeEEEECCEEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence            5789999999987655  999999999 99999999999999999999 775421                    11124


Q ss_pred             eecCCCC--CCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          383 YLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       383 ~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      |+|+...  ..+++                        +..++..+|+....++.+++|||||+ |++++++++.+|+++
T Consensus        83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (501)
T PRK11288         83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI  162 (501)
T ss_pred             EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            6777531  11111                        12345566776667888999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++..
T Consensus       163 lLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~  220 (501)
T PRK11288        163 AFDEPTSSLSAREIEQLFR-VIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA  220 (501)
T ss_pred             EEcCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999998 45556667889999999987 567899999999998754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.91  E-value=5.8e-24  Score=204.01  Aligned_cols=149  Identities=21%  Similarity=0.253  Sum_probs=116.1

Q ss_pred             EEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC-CCcc
Q 006974          327 MTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH-PRLP  393 (623)
Q Consensus       327 l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~-~~l~  393 (623)
                      ++++|+++.|++ +.+  ++||++.+| ++++|+||||||||||++++ |++.+-+        +...|+|++.. ...+
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~t   79 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGT   79 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccccc
Confidence            357899999953 344  999999999 99999999999999999999 6654321        11246666542 1123


Q ss_pred             HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974          394 WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       394 ~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH  472 (623)
                      ..+++..  +       ....||+|++ |+.++++++.+|+++||||||+|+|+.....+...+.+ +   +.|+|++||
T Consensus        80 v~~nl~~--~-------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~-~---~~tiiivsh  146 (166)
T cd03223          80 LREQLIY--P-------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE-L---GITVISVGH  146 (166)
T ss_pred             HHHHhhc--c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH-h---CCEEEEEeC
Confidence            3343321  1       5789999999 89999999999999999999999999999999885544 3   689999999


Q ss_pred             chhHHhhccccceeeCc
Q 006974          473 YADLSCLKDKDTRFENA  489 (623)
Q Consensus       473 ~~~l~~~~~~~~~i~~g  489 (623)
                      +.++..+||+++.+.++
T Consensus       147 ~~~~~~~~d~i~~l~~~  163 (166)
T cd03223         147 RPSLWKFHDRVLDLDGE  163 (166)
T ss_pred             ChhHHhhCCEEEEEcCC
Confidence            98877789988777654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=217.66  Aligned_cols=168  Identities=20%  Similarity=0.217  Sum_probs=130.3

Q ss_pred             CCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-----hh------------------
Q 006974          324 NSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-----LM------------------  377 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-----~~------------------  377 (623)
                      ..+++++|+++.|++..+  ++||++.+| ++++|+||||||||||||+| |++.     +.                  
T Consensus        22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         22 KVVFDTQNLNLWYGEDHALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             ceEEEEeeeEEEECCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            446899999999987555  999999999 99999999999999999999 7764     10                  


Q ss_pred             ---hhhceeecCCCCC-CccHHHHHH----------------------HHc----CCchhhhcccccccHHHH-HHHHHH
Q 006974          378 ---SKAGLYLPAKNHP-RLPWFDLIL----------------------ADI----GDHQSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       378 ---a~~G~~vp~~~~~-~l~~~d~i~----------------------~~i----g~~~~~~~~~stfS~g~~-rl~~~~  426 (623)
                         .+...|+|+.... ..++.+++.                      ..+    +..+.+++.+..||+||+ |+++++
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar  180 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR  180 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence               0113466766321 012223221                      112    122345678899999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  247 (271)
T PRK14238        181 CLAIEPDVILMDEPTSALDPISTLKVEELV-QELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEY  247 (271)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHH-HHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999954 45555 689999999988 5679999999999998654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.91  E-value=3.8e-24  Score=215.91  Aligned_cols=152  Identities=18%  Similarity=0.236  Sum_probs=120.4

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------hhceeecCCCC--CCccHH---------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNH--PRLPWF---------  395 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------~~G~~vp~~~~--~~l~~~---------  395 (623)
                      ++||++.+| ++++|+||||||||||+|++ |++.+.+              ....|+|+...  ..++..         
T Consensus         3 ~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~   81 (230)
T TIGR01184         3 GVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR   81 (230)
T ss_pred             ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence            578999999 99999999999999999999 7764311              01136666531  111221         


Q ss_pred             --------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006974          396 --------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL  460 (623)
Q Consensus       396 --------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l  460 (623)
                                    ..++..+|+.+..++.+++|||||+ |+.++++++.+|+++||||||+|||+.....+...+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~  161 (230)
T TIGR01184        82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW  161 (230)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence                          2345566777778889999999999 8999999999999999999999999999999999555543


Q ss_pred             hcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          461 RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       461 ~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+.+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       162 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~  196 (230)
T TIGR01184       162 EEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANI  196 (230)
T ss_pred             HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecc
Confidence            445889999999987 5789999999999988654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=3.4e-24  Score=210.78  Aligned_cols=153  Identities=15%  Similarity=0.192  Sum_probs=119.6

Q ss_pred             EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------hhceeecCCCC
Q 006974          327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPAKNH  389 (623)
Q Consensus       327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---------------~~G~~vp~~~~  389 (623)
                      ++++|++++|++..+ ++||++.+| ++++|+||||||||||++++ |+..+-+               +...|+|+...
T Consensus         2 l~~~~l~~~~~~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~   80 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFDLSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG   80 (195)
T ss_pred             eEEEEeeEEECCcEEEEEEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence            678999999987655 899999999 99999999999999999999 6654211               11235555431


Q ss_pred             C--CccHH----------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974          390 P--RLPWF----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV  450 (623)
Q Consensus       390 ~--~l~~~----------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~  450 (623)
                      .  ..++.                ..++..+|+.+..++.+++||+|++ |+.++++++.+|+++||||||+|+|+....
T Consensus        81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~  160 (195)
T PRK13541         81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD  160 (195)
T ss_pred             CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence            1  11222                2334566777778899999999999 899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974          451 ALATSILQYLRDRVGLAVVTTHYADLSCLKD  481 (623)
Q Consensus       451 ~l~~all~~l~~~~~~vii~TH~~~l~~~~~  481 (623)
                      .+...+ ....+.+.|+|++||+.+....++
T Consensus       161 ~l~~~l-~~~~~~~~tiii~sh~~~~i~~~~  190 (195)
T PRK13541        161 LLNNLI-VMKANSGGIVLLSSHLESSIKSAQ  190 (195)
T ss_pred             HHHHHH-HHHHhCCCEEEEEeCCccccchhh
Confidence            998844 445566889999999987554444

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.91  E-value=8.3e-24  Score=216.10  Aligned_cols=167  Identities=20%  Similarity=0.278  Sum_probs=128.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hhh-------------------hhhc
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SLM-------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~~-------------------a~~G  381 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||+++| |+.  .+.                   .+.|
T Consensus         7 ~l~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   85 (252)
T CHL00131          7 ILEIKNLHASVNENEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG   85 (252)
T ss_pred             eEEEEeEEEEeCCEEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence            5889999999987555  999999999 99999999999999999999 752  211                   0112


Q ss_pred             -eeecCCCC--CCccH----------------------------HHHHHHHcCCc-hhhhcccc-cccHHHH-HHHHHHH
Q 006974          382 -LYLPAKNH--PRLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE  427 (623)
Q Consensus       382 -~~vp~~~~--~~l~~----------------------------~d~i~~~ig~~-~~~~~~~s-tfS~g~~-rl~~~~~  427 (623)
                       .|+|+...  ..++.                            +..++..+|+. ...++.+. .||+||+ |++++++
T Consensus        86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a  165 (252)
T CHL00131         86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM  165 (252)
T ss_pred             EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence             24555421  00011                            12345556665 34567776 5999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hh-ccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~-~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+... +..+.+.+.|+|++||+.++. .+ |++++.+.+|++...
T Consensus       166 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~  233 (252)
T CHL00131        166 ALLDSELAILDETDSGLDIDALKIIAEG-INKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT  233 (252)
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence            9999999999999999999999999994 445666688999999998855 45 899999999988755

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.91  E-value=9.9e-24  Score=223.77  Aligned_cols=168  Identities=18%  Similarity=0.182  Sum_probs=132.7

Q ss_pred             CcEEEceeeeecCC----cc-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974          325 SEMTVGSLSKGISD----FP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~----~~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------  377 (623)
                      ..++++||++.|+.    .. + ++||++.+| ++++|+|+||||||||+++| |++.+-                    
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~   89 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK   89 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence            46899999999952    22 3 999999999 99999999999999999999 776431                    


Q ss_pred             ------hhhceeecCCCCC----CccH----------------------HHHHHHHcCCch---hhhcccccccHHHH-H
Q 006974          378 ------SKAGLYLPAKNHP----RLPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-R  421 (623)
Q Consensus       378 ------a~~G~~vp~~~~~----~l~~----------------------~d~i~~~ig~~~---~~~~~~stfS~g~~-r  421 (623)
                            .+...|+|++...    .+..                      +..++..+|+.+   .+++.++.|||||+ |
T Consensus        90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR  169 (330)
T PRK09473         90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR  169 (330)
T ss_pred             HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence                  0123578887421    1111                      123355566543   35678999999999 8


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      +.++++++.+|+|||+||||+|||+..+..+... +..+.+ .+.++|++|||+.+ ..+||++.++.+|+++..
T Consensus       170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~  243 (330)
T PRK09473        170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL-LNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY  243 (330)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999994 445554 48899999999885 468999999999998765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.8e-23  Score=216.43  Aligned_cols=167  Identities=17%  Similarity=0.248  Sum_probs=128.8

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------  377 (623)
                      -+++++||++.|++..+  +++|++.+| ++++|+||||||||||||+| |+..+.                        
T Consensus        19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~   97 (274)
T PRK14265         19 SVFEVEGVKVFYGGFLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV   97 (274)
T ss_pred             ceEEEeeEEEEeCCeEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence            36899999999987655  999999999 99999999999999999999 665310                        


Q ss_pred             --hhhceeecCCCCC-CccHHHHH--------------------HHHcCC----chhhhcccccccHHHH-HHHHHHHhc
Q 006974          378 --SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGD----HQSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       378 --a~~G~~vp~~~~~-~l~~~d~i--------------------~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                        .+...|+|+.... ..++++++                    +..+++    .+..++.++.||+||+ |++++++++
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265         98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence              0112467776321 01222222                    223333    2345678899999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee---------CceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE---------NAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~---------~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.         +|++..+
T Consensus       178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~  250 (274)
T PRK14265        178 MKPDVLLMDEPCSALDPISTRQVEELCL-ELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF  250 (274)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence            9999999999999999999999999554 4554 589999999987 668999999997         6776543

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=216.90  Aligned_cols=167  Identities=19%  Similarity=0.218  Sum_probs=130.1

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h-------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M-------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~-------------------  377 (623)
                      ..++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |+..+     .                   
T Consensus        24 ~~l~~~nl~~~~~~~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~  102 (272)
T PRK14236         24 TALEVRNLNLFYGDKQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA  102 (272)
T ss_pred             cEEEEEEEEEEECCeeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence            46899999999987655  999999999 99999999999999999999 77531     0                   


Q ss_pred             --hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHH
Q 006974          378 --SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 --a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                        .+...|+|+.... ..++.++                      ++..+++.    ...++.+.+||+|++ |++++++
T Consensus       103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara  182 (272)
T PRK14236        103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA  182 (272)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence              0112466665310 0122222                      22333443    235677899999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|+|+.....+...+. .+.+ +.++|++||+.+ +..+|++++.+.+|++...
T Consensus       183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~  248 (272)
T PRK14236        183 IAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY  248 (272)
T ss_pred             HHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence            999999999999999999999999998554 4555 689999999987 5679999999999998654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.91  E-value=7.5e-24  Score=238.84  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=132.5

Q ss_pred             cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h----------------
Q 006974          326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M----------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~----------------  377 (623)
                      +++++||++.|++    ..+  ++||++.+| ++++|+||||||||||||++ |++.+     .                
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            5889999999963    234  999999999 99999999999999999999 77652     0                


Q ss_pred             ------h-hhceeecCCCCC-C---ccH----------------------HHHHHHHcCCch---hhhcccccccHHHH-
Q 006974          378 ------S-KAGLYLPAKNHP-R---LPW----------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-  420 (623)
Q Consensus       378 ------a-~~G~~vp~~~~~-~---l~~----------------------~d~i~~~ig~~~---~~~~~~stfS~g~~-  420 (623)
                            . +...|+|+.... .   ..+                      ++.++..+|+.+   ..++.+++|||||+ 
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q  163 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ  163 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence                  0 113477776410 0   111                      123455667654   35889999999999 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++|++++.+|+++||||||+|||+.....+.. ++..+.++ +.|+|++||+.+ +..+||++..+.+|++..+
T Consensus       164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~  238 (529)
T PRK15134        164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ  238 (529)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence            8999999999999999999999999999999999 55556554 889999999988 5679999999999987653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.91  E-value=7.3e-24  Score=213.17  Aligned_cols=166  Identities=21%  Similarity=0.287  Sum_probs=129.9

Q ss_pred             cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---hhh----------------h
Q 006974          326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LMS----------------K  379 (623)
Q Consensus       326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---~~a----------------~  379 (623)
                      .+.++||++.|++    ..+  ++||++.+| ++++|+||||||||||+|++ |+..   +.+                +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK   81 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence            4568899999954    234  899999999 99999999999999999999 7765   321                1


Q ss_pred             hceeecCCCC--CCccHHHH-------------------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          380 AGLYLPAKNH--PRLPWFDL-------------------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       380 ~G~~vp~~~~--~~l~~~d~-------------------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ...|+|+...  ..+++.++                         ++..+++.+..++.++.||+|++ |++++++++.+
T Consensus        82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  161 (226)
T cd03234          82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD  161 (226)
T ss_pred             cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence            2346676541  11222221                         33344555556778899999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch--hHHhhccccceeeCceEEE
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~  493 (623)
                      |+++||||||+|+|+.....+... +..+.+.+.|+|++||+.  ++..+||++..+.+|++..
T Consensus       162 p~illlDEP~~gLD~~~~~~~~~~-l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~  224 (226)
T cd03234         162 PKVLILDEPTSGLDSFTALNLVST-LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY  224 (226)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence            999999999999999999999994 445566688999999997  4788999999999998754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=215.25  Aligned_cols=167  Identities=21%  Similarity=0.255  Sum_probs=128.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------h------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a------------------  378 (623)
                      .++++||++.|++..+  ++||++.+| ++++|+||||+||||||+++ |+..+-      .                  
T Consensus         7 ~l~~~nl~~~~~~~~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~   85 (261)
T PRK14258          7 AIKVNNLSFYYDTQKILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR   85 (261)
T ss_pred             eEEEeeEEEEeCCeeEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence            6889999999987554  999999999 99999999999999999999 775431      0                  


Q ss_pred             --hhceeecCCCC-CCccHHHHH----------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          379 --KAGLYLPAKNH-PRLPWFDLI----------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       379 --~~G~~vp~~~~-~~l~~~d~i----------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                        +...|+|+... ...++.+++                      +..+++.    ...++.+.+||+||+ |+++++++
T Consensus        86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  165 (261)
T PRK14258         86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL  165 (261)
T ss_pred             hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence              11234555421 012222222                      2233432    234677899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeC-----ceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFEN-----AATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~-----g~~~~~  494 (623)
                      +.+|+++||||||+|+|+.....+...+. .++ +.+.|+|++||+.+ +..+|++++.+.+     |++...
T Consensus       166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~-~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~  237 (261)
T PRK14258        166 AVKPKVLLMDEPCFGLDPIASMKVESLIQ-SLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF  237 (261)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence            99999999999999999999999999555 454 35889999999988 6689999999998     887654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.91  E-value=3.3e-24  Score=200.90  Aligned_cols=140  Identities=21%  Similarity=0.256  Sum_probs=111.3

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD  404 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~  404 (623)
                      ++++|+++.|++..+  ++||++.+| ++++|+||||+|||||++++        +|.+.|..|...+...    ..++ 
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l--------~G~~~~~~G~i~~~~~----~~i~-   66 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLI--------AGELEPDEGIVTWGST----VKIG-   66 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHH--------cCCCCCCceEEEECCe----EEEE-
Confidence            357899999986555  999999999 99999999999999999999        7766666653222110    0011 


Q ss_pred             chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccc
Q 006974          405 HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK  482 (623)
Q Consensus       405 ~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~  482 (623)
                            .+..||+|++ |++++++++.+|+++|+|||++|+|+.....+...+ ..+   +.++|++||+.+ +..+|++
T Consensus        67 ------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l-~~~---~~til~~th~~~~~~~~~d~  136 (144)
T cd03221          67 ------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL-KEY---PGTVILVSHDRYFLDQVATK  136 (144)
T ss_pred             ------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHc---CCEEEEEECCHHHHHHhCCE
Confidence                  1122999999 799999999999999999999999999999988844 333   579999999987 5578999


Q ss_pred             cceeeCce
Q 006974          483 DTRFENAA  490 (623)
Q Consensus       483 ~~~i~~g~  490 (623)
                      +..+.+|+
T Consensus       137 v~~l~~g~  144 (144)
T cd03221         137 IIELEDGK  144 (144)
T ss_pred             EEEEeCCC
Confidence            88887763

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.91  E-value=1.1e-23  Score=214.88  Aligned_cols=162  Identities=19%  Similarity=0.271  Sum_probs=127.7

Q ss_pred             EEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h------------hhhceeecCC
Q 006974          328 TVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M------------SKAGLYLPAK  387 (623)
Q Consensus       328 ~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~------------a~~G~~vp~~  387 (623)
                      +++||++.  . .+ ++||++.+| ++++|+||||||||||++++ |+...      .            .+...|+|+.
T Consensus         2 ~~~~l~~~--~-~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~   77 (248)
T PRK03695          2 QLNDVAVS--T-RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ   77 (248)
T ss_pred             cccccchh--c-eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence            45667765  1 34 999999999 99999999999999999999 66531      0            0112467765


Q ss_pred             CC--CCccH--------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC-------CCcEEEE
Q 006974          388 NH--PRLPW--------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLI  437 (623)
Q Consensus       388 ~~--~~l~~--------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~-------~~~LlLL  437 (623)
                      ..  ..++.                    ++.++..+|+.+..++.+.+||+||+ |+.++++++.       +|+++||
T Consensus        78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll  157 (248)
T PRK03695         78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL  157 (248)
T ss_pred             CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence            31  01111                    24556777888888899999999999 7999999986       6799999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+.....+.. ++..+.+++.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       158 DEPt~~LD~~~~~~l~~-~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~  214 (248)
T PRK03695        158 DEPMNSLDVAQQAALDR-LLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS  214 (248)
T ss_pred             cCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999998 55556666889999999987 7789999999999998654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=214.03  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=128.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      +++++|+++.|++..+  ++||++.+| ++++|+||||||||||+|++ |+..+.                         
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   84 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA   84 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence            5789999999987665  999999999 99999999999999999999 654210                         


Q ss_pred             -hhhceeecCCCCCC-ccHHH----------------------HHHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHPR-LPWFD----------------------LILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~~-l~~~d----------------------~i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+..... .++.+                      .++..+++.    ..+++.+..||+|++ |+++++++
T Consensus        85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  164 (253)
T PRK14261         85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL  164 (253)
T ss_pred             hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence             01124666653110 11111                      122333432    345678899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|+|+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       165 ~~~p~lllLDEP~~gLD~~~~~~l~~~-l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~  229 (253)
T PRK14261        165 AVNPEVILMDEPCSALDPIATAKIEDL-IEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF  229 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence            999999999999999999999999884 445555 589999999987 5579999999999988654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=8.2e-24  Score=203.55  Aligned_cols=166  Identities=20%  Similarity=0.235  Sum_probs=133.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhceee
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYL  384 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~v  384 (623)
                      |+.+|++++..++.+  +++|++.+| ++++|+||||+|||||||.+ |-..+                   ||+.-...
T Consensus         2 i~a~nls~~~~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl   80 (259)
T COG4559           2 IRAENLSYSLAGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL   80 (259)
T ss_pred             eeeeeeEEEeecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence            678899999977666  999999999 99999999999999999999 44331                   33333344


Q ss_pred             cCCCCCCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC------CC
Q 006974          385 PAKNHPRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RE  432 (623)
Q Consensus       385 p~~~~~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~------~~  432 (623)
                      ||.....|++                         .++.++..+......+...+||||++ |+.+++.++.      ++
T Consensus        81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~  160 (259)
T COG4559          81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG  160 (259)
T ss_pred             ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence            5543222222                         34567777777778889999999999 7888876542      44


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~  494 (623)
                      ..++|||||+.||+.....+.. +.+.+...|+.|+++-||++++ .|||+++.+.+|++...
T Consensus       161 r~L~LDEPtsaLDi~HQ~~tl~-laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~  222 (259)
T COG4559         161 RWLFLDEPTSALDIAHQHHTLR-LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS  222 (259)
T ss_pred             ceEEecCCccccchHHHHHHHH-HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence            6999999999999999999999 7777888889999999999975 69999999999998765

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.91  E-value=1.8e-23  Score=216.22  Aligned_cols=165  Identities=17%  Similarity=0.160  Sum_probs=131.2

Q ss_pred             cEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhce
Q 006974          326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G~  382 (623)
                      .++++||+++|+  +..+  ++||+|.+| ++++|+|||||||||||++| |++..                  +.+...
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~   80 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFG   80 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEE
Confidence            478999999994  3444  999999999 99999999999999999999 66521                  112335


Q ss_pred             eecCCCCCCcc--H--------------HHHHHHHcCCchhhhccccc-----------ccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNHPRLP--W--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~~~~~st-----------fS~g~~-rl~~~~~l~~~~~L  434 (623)
                      |+|+... .++  +              +...+..+|+.+.+++.+..           ||+||+ |+.++++++.+|++
T Consensus        81 ~v~q~~~-lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i  159 (275)
T cd03289          81 VIPQKVF-IFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI  159 (275)
T ss_pred             EECCCcc-cchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            7787652 111  1              22345667777777776655           999999 79999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||||+|+|+.....+...+.+ +. .++|+|++||+++....|+++..+.+|++...
T Consensus       160 lllDEpts~LD~~~~~~l~~~l~~-~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~  217 (275)
T cd03289         160 LLLDEPSAHLDPITYQVIRKTLKQ-AF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQY  217 (275)
T ss_pred             EEEECccccCCHHHHHHHHHHHHH-hc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence            999999999999999999985554 43 47899999999986567999999999988765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=1.1e-23  Score=216.80  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=117.7

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hc--eeecCCCC--CCccHHH----------------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG--LYLPAKNH--PRLPWFD----------------  396 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G--~~vp~~~~--~~l~~~d----------------  396 (623)
                      +++|++.+| ++++|+|||||||||||+++ |++.+.+.    .|  .++++...  ..+++.+                
T Consensus        42 ~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~  120 (264)
T PRK13546         42 DISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEI  120 (264)
T ss_pred             eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence            899999999 99999999999999999999 66543210    01  12222210  1122222                


Q ss_pred             -----HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974          397 -----LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT  470 (623)
Q Consensus       397 -----~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~  470 (623)
                           .++..+++.+.+++.+.+||+||+ |++++++++.+|+++||||||+|+|+.....+...+ ..+.+.+.|+|++
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L-~~~~~~g~tiIii  199 (264)
T PRK13546        121 KAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI-YEFKEQNKTIFFV  199 (264)
T ss_pred             HHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HHHHHCCCEEEEE
Confidence                 234445667778889999999999 899999999999999999999999999999999954 4456678899999


Q ss_pred             cCchh-HHhhccccceeeCceEEEe
Q 006974          471 THYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       471 TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+.+ +..+|++++.+.+|++...
T Consensus       200 sH~~~~i~~~~d~i~~l~~G~i~~~  224 (264)
T PRK13546        200 SHNLGQVRQFCTKIAWIEGGKLKDY  224 (264)
T ss_pred             cCCHHHHHHHcCEEEEEECCEEEEe
Confidence            99987 5678999999999988644

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.1e-23  Score=236.02  Aligned_cols=167  Identities=13%  Similarity=0.126  Sum_probs=133.5

Q ss_pred             cEEEceeeeecC---Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-h--------------------h
Q 006974          326 EMTVGSLSKGIS---DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-M--------------------S  378 (623)
Q Consensus       326 ~l~~~~l~~~y~---~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-~--------------------a  378 (623)
                      .++++|+++.|+   +..+  ++||++.+| ++++|+||||||||||||++ |++.+ .                    .
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~  335 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR  335 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence            578899999993   3334  999999999 99999999999999999999 77642 1                    0


Q ss_pred             hhceeecCCCC-----CC--------cc------------------HHHHHHHHcCCch-hhhcccccccHHHH-HHHHH
Q 006974          379 KAGLYLPAKNH-----PR--------LP------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       379 ~~G~~vp~~~~-----~~--------l~------------------~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~  425 (623)
                      +.-.|+|+...     ..        ++                  .++.++..+++.+ ..++.+.+|||||+ |+.+|
T Consensus       336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  415 (500)
T TIGR02633       336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA  415 (500)
T ss_pred             CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence            11246666520     00        00                  0234566778753 57889999999999 89999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|++.++
T Consensus       416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~  484 (500)
T TIGR02633       416 KMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGD  484 (500)
T ss_pred             HHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999998 55667777889999999987 6689999999999988764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.91  E-value=9.9e-24  Score=211.77  Aligned_cols=158  Identities=20%  Similarity=0.239  Sum_probs=122.0

Q ss_pred             EEEceeeeecCC-------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------h---------
Q 006974          327 MTVGSLSKGISD-------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------S---------  378 (623)
Q Consensus       327 l~~~~l~~~y~~-------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------a---------  378 (623)
                      ++++||++.|++       ..+  ++||++.+| ++++|+||||||||||+|++ |++.+.         .         
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            678999999962       234  999999999 99999999999999999999 665321         0         


Q ss_pred             ---------hhceeecCCCCC--CccH---------------------HHHHHHHcCCchh-hhcccccccHHHH-HHHH
Q 006974          379 ---------KAGLYLPAKNHP--RLPW---------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       379 ---------~~G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~~  424 (623)
                               +...|+|+....  .+..                     +..++..+|+.+. .++.+.+||+||+ |+++
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence                     112467765421  0111                     1224556676654 4678999999999 7999


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhcccccee
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRF  486 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i  486 (623)
                      +++++.+|+++||||||+|+|+.....+... +..+++++.|+|++||+.++. .+||+++.+
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       161 ARGFIADYPILLLDEPTASLDAANRQVVVEL-IAEAKARGAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence            9999999999999999999999999999994 455666688999999998854 688876554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.8e-24  Score=237.64  Aligned_cols=163  Identities=18%  Similarity=0.167  Sum_probs=131.5

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhceeec
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLP  385 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~vp  385 (623)
                      ++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                    .+.-.|+|
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            3689999987655  999999999 99999999999999999999 776421                    01124777


Q ss_pred             CCCC--CCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          386 AKNH--PRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       386 ~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      +...  ..+++                        +..++..+|+....++.+++|||||+ |+++|++++.+|+++|||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD  159 (491)
T PRK10982         80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD  159 (491)
T ss_pred             cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            7631  11111                        12345566776677889999999999 899999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |||+|||+.....+.. ++..+.+.|.++|++||+.+ +..+|++++.+.+|++..
T Consensus       160 EPt~~LD~~~~~~l~~-~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~  214 (491)
T PRK10982        160 EPTSSLTEKEVNHLFT-IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA  214 (491)
T ss_pred             CCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999 55566777889999999987 567999999999998764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.91  E-value=8.4e-24  Score=236.32  Aligned_cols=169  Identities=17%  Similarity=0.180  Sum_probs=132.2

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------h---------hhh
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------M---------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------~---------a~~  380 (623)
                      .+++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |+...            .         .+.
T Consensus       259 ~~l~~~~l~~~~~~~~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~  337 (490)
T PRK10938        259 PRIVLNNGVVSYNDRPILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH  337 (490)
T ss_pred             ceEEEeceEEEECCeeEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence            36889999999987655  999999999 99999999999999999999 76432            0         011


Q ss_pred             ceeecCCCCC--C--cc-------------------------HHHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhc
Q 006974          381 GLYLPAKNHP--R--LP-------------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       381 G~~vp~~~~~--~--l~-------------------------~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      ..|+|+....  .  ..                         .++.++..+|+.+ ..++++++|||||+ |++++++++
T Consensus       338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  417 (490)
T PRK10938        338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV  417 (490)
T ss_pred             ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence            2355553210  0  00                         1234566778876 77889999999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEcCchhHH-h-hccccceeeCceEEEec
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV-GLAVVTTHYADLS-C-LKDKDTRFENAATEFSL  495 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~-~~vii~TH~~~l~-~-~~~~~~~i~~g~~~~~~  495 (623)
                      .+|+++||||||+|||+.....+.. ++..+.+++ .|+|++||+.+.. . +|++++.+.+|++....
T Consensus       418 ~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        418 KHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV  485 (490)
T ss_pred             cCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence            9999999999999999999999999 455565555 4699999998844 5 58889999999876553

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=9.9e-24  Score=237.88  Aligned_cols=161  Identities=16%  Similarity=0.164  Sum_probs=127.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCC--Ccc
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHP--RLP  393 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~--~l~  393 (623)
                      ++++|++++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+..        ....|+|+....  .++
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t   80 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT   80 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence            678999999987665  999999999 99999999999999999999 7765321        112366665311  111


Q ss_pred             H-----------------------------------------------------HHHHHHHcCCchhh-hcccccccHHH
Q 006974          394 W-----------------------------------------------------FDLILADIGDHQSL-EQNLSTFSGHI  419 (623)
Q Consensus       394 ~-----------------------------------------------------~d~i~~~ig~~~~~-~~~~stfS~g~  419 (623)
                      +                                                     +..++..+|+.+.. ++.+++|||||
T Consensus        81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq  160 (530)
T PRK15064         81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW  160 (530)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence            1                                                     12345556665433 46789999999


Q ss_pred             H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                      + |+++|++++.+|+++||||||+|||+.....+...+.    +.+.|||++||+.+ +..+|++++.+.+|++.
T Consensus       161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~  231 (530)
T PRK15064        161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLDYGELR  231 (530)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence            9 8999999999999999999999999999998888442    34789999999988 67899999999999875

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=8e-24  Score=238.67  Aligned_cols=163  Identities=19%  Similarity=0.254  Sum_probs=132.1

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC----
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH----  389 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~----  389 (623)
                      ..++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+..        ....|+|+...    
T Consensus       318 ~~l~~~~l~~~~~~~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~  396 (530)
T PRK15064        318 NALEVENLTKGFDNGPLFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFE  396 (530)
T ss_pred             ceEEEEeeEEeeCCceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCC
Confidence            47899999999987655  999999999 99999999999999999999 7764321        11246777531    


Q ss_pred             CCccHH----------------HHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHH
Q 006974          390 PRLPWF----------------DLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVA  451 (623)
Q Consensus       390 ~~l~~~----------------d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~  451 (623)
                      ..+++.                +.++..+|+. +..++++++|||||+ |++++++++.+|+++||||||+|||+.....
T Consensus       397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~  476 (530)
T PRK15064        397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIES  476 (530)
T ss_pred             CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence            112222                2345667773 567899999999999 8999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          452 LATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       452 l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                      +...+.+ +   ++|+|++|||.+ +..+|++++.+.+|++.
T Consensus       477 l~~~l~~-~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~  514 (530)
T PRK15064        477 LNMALEK-Y---EGTLIFVSHDREFVSSLATRIIEITPDGVV  514 (530)
T ss_pred             HHHHHHH-C---CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence            9885443 3   569999999988 56789999999999876

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2e-23  Score=214.14  Aligned_cols=166  Identities=23%  Similarity=0.252  Sum_probs=130.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------  378 (623)
                      .+.++|++++|++..+  ++||++.+| ++++|+|||||||||||++| |+..+-.                        
T Consensus        10 ~i~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~   88 (257)
T PRK14246         10 VFNISRLYLYINDKAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL   88 (257)
T ss_pred             heeeeeEEEecCCceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence            5789999999988766  999999999 99999999999999999999 6654211                        


Q ss_pred             -hhceeecCCCCC--CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          379 -KAGLYLPAKNHP--RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       379 -~~G~~vp~~~~~--~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       +...|+|+....  .+++.++                      ++..+|+.    +..++.+..||+||+ |+++++++
T Consensus        89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  168 (257)
T PRK14246         89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL  168 (257)
T ss_pred             hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence             112466665421  1122222                      23345553    345678899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|||+.....+...+ ..+.+ ++|+|++||+.+. ..+|++.+.+.+|++...
T Consensus       169 ~~~P~llllDEPt~~LD~~~~~~l~~~l-~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~  233 (257)
T PRK14246        169 ALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEW  233 (257)
T ss_pred             HcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999944 45554 5899999999884 579999999999988654

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.2e-23  Score=212.90  Aligned_cols=166  Identities=20%  Similarity=0.221  Sum_probs=128.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------h------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------S------------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a------------------  378 (623)
                      .++++||++.|++..+  +++|++.+| ++++|+||||||||||||+| |+..+-      +                  
T Consensus         7 ~l~~~~l~~~~~~~~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   85 (259)
T PRK14260          7 AIKVKDLSFYYNTSKAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR   85 (259)
T ss_pred             eEEEEEEEEEECCeEeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence            5889999999987555  999999999 99999999999999999999 765420      0                  


Q ss_pred             --hhceeecCCCCC-CccHHHH----------------------HHHHcCC----chhhhcccccccHHHH-HHHHHHHh
Q 006974          379 --KAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       379 --~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~----~~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                        ....|+|+.... ..+..++                      ++..+|+    .+..++.+.+||+|++ |+++++++
T Consensus        86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  165 (259)
T PRK14260         86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL  165 (259)
T ss_pred             hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence              112356665311 1122222                      2333444    2346678899999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee-----CceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE-----NAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~-----~g~~~~~  494 (623)
                      +.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+|++++.+.     +|++...
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~  235 (259)
T PRK14260        166 AIKPKVLLMDEPCSALDPIATMKVEELIH-SLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF  235 (259)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence            99999999999999999999999999554 4555 589999999987 668999998887     4877654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.90  E-value=3.1e-24  Score=207.61  Aligned_cols=143  Identities=25%  Similarity=0.243  Sum_probs=110.3

Q ss_pred             ceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhh
Q 006974          330 GSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSL  408 (623)
Q Consensus       330 ~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~  408 (623)
                      .||++.|++..+ ..++++.+| ++++|+||||||||||+|++        .|...|.+|...+...     .++.   .
T Consensus         4 ~~l~~~~~~~~~l~~~~~i~~G-e~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~-----~i~~---~   66 (177)
T cd03222           4 PDCVKRYGVFFLLVELGVVKEG-EVIGIVGPNGTGKTTAVKIL--------AGQLIPNGDNDEWDGI-----TPVY---K   66 (177)
T ss_pred             CCeEEEECCEEEEccCcEECCC-CEEEEECCCCChHHHHHHHH--------HcCCCCCCcEEEECCE-----EEEE---E
Confidence            478999988766 445899999 99999999999999999999        7766666653322110     0110   0


Q ss_pred             hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccce
Q 006974          409 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTR  485 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~  485 (623)
                      .+.. .||+||+ |++++++++.+|+++||||||+|+|+.....+...+.+ +.++ +.++|++||+.+ +..+|+++..
T Consensus        67 ~q~~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~-~~~~~~~tiiivsH~~~~~~~~~d~i~~  144 (177)
T cd03222          67 PQYI-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR-LSEEGKKTALVVEHDLAVLDYLSDRIHV  144 (177)
T ss_pred             cccC-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH-HHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence            0111 1999999 89999999999999999999999999999999995554 4444 489999999988 5568998888


Q ss_pred             eeCceE
Q 006974          486 FENAAT  491 (623)
Q Consensus       486 i~~g~~  491 (623)
                      +.++..
T Consensus       145 l~~~~~  150 (177)
T cd03222         145 FEGEPG  150 (177)
T ss_pred             EcCCCc
Confidence            776543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.6e-23  Score=213.17  Aligned_cols=167  Identities=17%  Similarity=0.199  Sum_probs=129.8

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------------
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------------  377 (623)
                      +.++++|++++|+++.+  ++||++.+| ++++|+|||||||||||+++ |+..+.                        
T Consensus        15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~   93 (265)
T PRK14252         15 QKSEVNKLNFYYGGYQALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD   93 (265)
T ss_pred             ceEEEEEEEEEECCeeeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence            46899999999987655  999999999 99999999999999999999 765320                        


Q ss_pred             ----hhhceeecCCCCC-CccHHH----------------------HHHHHcCC----chhhhcccccccHHHH-HHHHH
Q 006974          378 ----SKAGLYLPAKNHP-RLPWFD----------------------LILADIGD----HQSLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       378 ----a~~G~~vp~~~~~-~l~~~d----------------------~i~~~ig~----~~~~~~~~stfS~g~~-rl~~~  425 (623)
                          .+...|+|+.... ..++.+                      .++..++.    .+..++...+||+|++ |+.++
T Consensus        94 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  173 (265)
T PRK14252         94 PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA  173 (265)
T ss_pred             HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence                0112466765310 011111                      12233343    2345677899999999 89999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++.+|+++||||||+|+|+.....+... +..+.+ +.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       174 ral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~  241 (265)
T PRK14252        174 RALATDPEILLFDEPTSALDPIATASIEEL-ISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEF  241 (265)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999994 455655 589999999988 5579999999999988654

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.90  E-value=2e-23  Score=214.21  Aligned_cols=167  Identities=13%  Similarity=0.055  Sum_probs=127.0

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~  379 (623)
                      .+.++++|++++|++  ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   .+
T Consensus        17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~   95 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS   95 (257)
T ss_pred             CceEEEEEEEEEeCCCCCcceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence            367999999999975  334  999999999 99999999999999999999 765421                   11


Q ss_pred             hceeecCCCCCCcc--H--------------HHHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCC
Q 006974          380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ...|+|+... .++  +              +..++...+...           .+......||+||+ |++++++++.+
T Consensus        96 ~i~~v~q~~~-l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  174 (257)
T cd03288          96 RLSIILQDPI-LFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK  174 (257)
T ss_pred             hEEEECCCCc-ccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            2346676531 111  1              112222233332           23344579999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|+|+.....+...+ ..+. ++.|+|++||+.+....|++++.+.+|++..+
T Consensus       175 p~llllDEPt~gLD~~~~~~l~~~l-~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~  235 (257)
T cd03288         175 SSILIMDEATASIDMATENILQKVV-MTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILVEC  235 (257)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHH-HHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999888844 4454 47899999999986556999999999998754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.9e-23  Score=212.90  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=126.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----h--------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----M--------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----~--------------------  377 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||+|||||||++ |+..+     .                    
T Consensus        10 ~l~i~~v~~~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   88 (264)
T PRK14243         10 VLRTENLNVYYGSFLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE   88 (264)
T ss_pred             EEEEeeeEEEECCEEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence            5889999999987655  999999999 99999999999999999999 66431     0                    


Q ss_pred             -hhhceeecCCCCC-CccHHHHH--------------------HHHcCCc----hhhhcccccccHHHH-HHHHHHHhcC
Q 006974          378 -SKAGLYLPAKNHP-RLPWFDLI--------------------LADIGDH----QSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d~i--------------------~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                       .+...|+|+.... ..++.+++                    +..++..    +..++.+.+||+||+ |++++++++.
T Consensus        89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~  168 (264)
T PRK14243         89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV  168 (264)
T ss_pred             HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence             0112456665310 01222222                    2333332    235667889999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee---------CceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE---------NAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~---------~g~~~~~  494 (623)
                      +|+++||||||+|||+.....+... +..+.+ +.|+|++||+.+ +..+|++++.+.         +|+++..
T Consensus       169 ~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~  240 (264)
T PRK14243        169 QPEVILMDEPCSALDPISTLRIEEL-MHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF  240 (264)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHH-HHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence            9999999999999999999999984 455555 479999999987 678999999887         5766543

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.90  E-value=2.2e-23  Score=206.73  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=125.3

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++|+++.|++  ..+  +++|++.+| ++++|+||||+|||||||++ |+..+-                   .+.
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   83 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS   83 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence            46889999999975  234  999999999 99999999999999999999 665321                   122


Q ss_pred             ceeecCCCCC-CccHHHHH-----------HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          381 GLYLPAKNHP-RLPWFDLI-----------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       381 G~~vp~~~~~-~l~~~d~i-----------~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                      -.|+|+.... ..++.+++           ...++    ++..+.+||+|++ |++++++++.+|+++||||||+|+|+.
T Consensus        84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~  159 (207)
T cd03369          84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA  159 (207)
T ss_pred             EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence            3467776411 11222322           11111    4567899999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      ....+...+. .+.+ +.|+|++||+.+....|++++.+.+|++..
T Consensus       160 ~~~~l~~~l~-~~~~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~  203 (207)
T cd03369         160 TDALIQKTIR-EEFT-NSTILTIAHRLRTIIDYDKILVMDAGEVKE  203 (207)
T ss_pred             HHHHHHHHHH-HhcC-CCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence            9999998544 4443 789999999988555599999999998754

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=5.2e-24  Score=202.69  Aligned_cols=167  Identities=22%  Similarity=0.271  Sum_probs=132.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHh-hhhh-------------------hhhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASL-------------------MSKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~-------------------~a~~G~~  383 (623)
                      +++++||+|+|+++.|  ++|+.+++| .++.|+||||+||||||.+++ |+..                   +|+.-+.
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence            3678999999999887  999999999 899999999999999999993 3321                   1211111


Q ss_pred             ecCCC-------------CCCcc------------HHHHHHHHcCCchhhhcccccccHHHHHHHHHH-HhcCCCcEEEE
Q 006974          384 LPAKN-------------HPRLP------------WFDLILADIGDHQSLEQNLSTFSGHISRIVDIL-ELVSRESLVLI  437 (623)
Q Consensus       384 vp~~~-------------~~~l~------------~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~-~l~~~~~LlLL  437 (623)
                      +-|+.             +-++|            .+++.+..+++.+.-++.+.+||||+++.++++ .++++.+.++|
T Consensus        80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL  159 (252)
T COG4604          80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL  159 (252)
T ss_pred             HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence            11110             01122            256677888899999999999999999666655 48999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~  494 (623)
                      |||.++||......++. +++.+. +.|.|+++|-||.+++ .++|+++.++||.++..
T Consensus       160 DEPLNNLDmkHsv~iMk-~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~  217 (252)
T COG4604         160 DEPLNNLDMKHSVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ  217 (252)
T ss_pred             cCcccccchHHHHHHHH-HHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence            99999999999999999 555555 5689999999999976 58999999999998754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=8e-24  Score=204.58  Aligned_cols=143  Identities=26%  Similarity=0.291  Sum_probs=112.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhcee-----ecCCCCCCccHH--HHHHHHcCCch-hhhcccc
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLY-----LPAKNHPRLPWF--DLILADIGDHQ-SLEQNLS  413 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~-----vp~~~~~~l~~~--d~i~~~ig~~~-~~~~~~s  413 (623)
                      ++||++.+| ++++|+||||||||||||++..     ..|..     .+......+.++  .+.+..+++.. .+++.++
T Consensus        13 ~isl~i~~G-~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~   86 (176)
T cd03238          13 NLDVSIPLN-VLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLS   86 (176)
T ss_pred             ceEEEEcCC-CEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcC
Confidence            899999999 9999999999999999999810     11211     010000011111  34678888875 4788999


Q ss_pred             cccHHHH-HHHHHHHhcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974          414 TFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA  490 (623)
Q Consensus       414 tfS~g~~-rl~~~~~l~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~  490 (623)
                      +||+|++ |++++++++.+  |+++||||||+|+|+.....+...+ ..+.+.+.++|++||+.+....|+++..+.+|.
T Consensus        87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~  165 (176)
T cd03238          87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI-KGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS  165 (176)
T ss_pred             cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence            9999999 89999999999  9999999999999999999999954 445667899999999998767899988887764


Q ss_pred             E
Q 006974          491 T  491 (623)
Q Consensus       491 ~  491 (623)
                      .
T Consensus       166 ~  166 (176)
T cd03238         166 G  166 (176)
T ss_pred             C
Confidence            3

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2e-23  Score=234.30  Aligned_cols=166  Identities=16%  Similarity=0.197  Sum_probs=133.4

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~  383 (623)
                      .++++|+++.|+. .+ ++||++.+| ++++|+||||||||||||+| |+..+.                    .+...|
T Consensus       265 ~l~~~~l~~~~~~-~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~  342 (510)
T PRK09700        265 VFEVRNVTSRDRK-KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY  342 (510)
T ss_pred             EEEEeCccccCCC-cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence            5788999988753 34 999999999 99999999999999999999 765321                    011247


Q ss_pred             ecCCC-----CCCccH------------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHH
Q 006974          384 LPAKN-----HPRLPW------------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       384 vp~~~-----~~~l~~------------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~  426 (623)
                      +|+..     ...+++                              ++.++..+|+. +..++.+++|||||+ |+.+|+
T Consensus       343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr  422 (510)
T PRK09700        343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK  422 (510)
T ss_pred             ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence            77751     000111                              23456677886 678899999999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++|||.+ +..+|++++.+.+|++...
T Consensus       423 al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  490 (510)
T PRK09700        423 WLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI  490 (510)
T ss_pred             HHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999 55556666889999999987 6689999999999987643

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4.5e-23  Score=210.49  Aligned_cols=166  Identities=20%  Similarity=0.240  Sum_probs=128.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh--h---h--------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS--L---M--------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~--~---~--------------------  377 (623)
                      +++++||++.|++..+  +++|++.+| ++++|+||||+||||||++| |+..  .   .                    
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~   81 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE   81 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence            4678999999987555  999999999 99999999999999999999 6642  1   0                    


Q ss_pred             -hhhceeecCCCCC-CccHHHH----------------------HHHHcCCc----hhhhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNHP-RLPWFDL----------------------ILADIGDH----QSLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~~----~~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+|+.... ..+..++                      ++..+|+.    ...++.+..||+|++ |+++++++
T Consensus        82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  161 (250)
T PRK14266         82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI  161 (250)
T ss_pred             HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence             1123567766421 0111221                      23333432    234677899999999 79999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+|+|+.....+...+. .+.+ +.|+|++||+.+ +..+++++..+.+|++..+
T Consensus       162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~  226 (250)
T PRK14266        162 AVSPEVILMDEPCSALDPISTTKIEDLIH-KLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIES  226 (250)
T ss_pred             HcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence            99999999999999999999999998544 5554 789999999987 6678888888999998765

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.4e-23  Score=238.63  Aligned_cols=168  Identities=15%  Similarity=0.098  Sum_probs=134.8

Q ss_pred             CcEEEceeeeecCC-----------ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------
Q 006974          325 SEMTVGSLSKGISD-----------FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-----------~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------  377 (623)
                      .+++++||++.|+.           ..+  ++||++.+| ++++|+||||||||||+|+| |++.+.             
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT  390 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence            46899999999961           233  999999999 99999999999999999999 776421             


Q ss_pred             ---------hhhceeecCCCC----CCccH----------------------HHHHHHHcCCc-hhhhcccccccHHHH-
Q 006974          378 ---------SKAGLYLPAKNH----PRLPW----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-  420 (623)
Q Consensus       378 ---------a~~G~~vp~~~~----~~l~~----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-  420 (623)
                               .+...|+|++..    ..+.+                      +..++..+|+. +..++.+++|||||+ 
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence                     012357888641    11111                      12346667885 567899999999999 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++|++++.+|+||||||||+|||+.....+... +..+.+ .|.++|++|||++ +..+||++..+.+|++...
T Consensus       471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~l-l~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~  545 (623)
T PRK10261        471 RICIARALALNPKVIIADEAVSALDVSIRGQIINL-LLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI  545 (623)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            89999999999999999999999999999999994 445554 4889999999988 5679999999999998754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.90  E-value=3.4e-23  Score=233.51  Aligned_cols=167  Identities=17%  Similarity=0.189  Sum_probs=132.4

Q ss_pred             cEEEceeeeecC-----------Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh------hh--------
Q 006974          326 EMTVGSLSKGIS-----------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------LM--------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~-----------~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~------~~--------  377 (623)
                      +++++||++.|+           +..+  ++||++.+| ++++|+||||||||||+|++ |++.      +.        
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~  353 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLN  353 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccc
Confidence            477899999995           2334  999999999 99999999999999999999 7652      10        


Q ss_pred             -------hhhceeecCCCC----CCccH-----------------------HHHHHHHcCCc-hhhhcccccccHHHH-H
Q 006974          378 -------SKAGLYLPAKNH----PRLPW-----------------------FDLILADIGDH-QSLEQNLSTFSGHIS-R  421 (623)
Q Consensus       378 -------a~~G~~vp~~~~----~~l~~-----------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-r  421 (623)
                             .+...|+|+...    ..+++                       +..++..+|+. +..++.+++|||||+ |
T Consensus       354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr  433 (529)
T PRK15134        354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR  433 (529)
T ss_pred             hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence                   111357777631    11111                       12345667776 467899999999999 8


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++++++.+|+++||||||+|||+.....+...+ ..+++ .+.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       434 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  507 (529)
T PRK15134        434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALL-KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ  507 (529)
T ss_pred             HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHH-HHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence            99999999999999999999999999999999954 44554 4889999999987 5679999999999988654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=4.1e-23  Score=217.04  Aligned_cols=169  Identities=18%  Similarity=0.207  Sum_probs=129.5

Q ss_pred             CCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-----------------------
Q 006974          323 ENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-----------------------  376 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-----------------------  376 (623)
                      ++.++.++||++.|++..+  +++|++.+| ++++|+|||||||||||++| |+..+                       
T Consensus        42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             CCceEEEEEEEEEeCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            3457999999999987655  999999999 99999999999999999999 77531                       


Q ss_pred             ---hhhhceeecCCCCC-CccHHHHH----------------------------------HHHcCCc----hhhhccccc
Q 006974          377 ---MSKAGLYLPAKNHP-RLPWFDLI----------------------------------LADIGDH----QSLEQNLST  414 (623)
Q Consensus       377 ---~a~~G~~vp~~~~~-~l~~~d~i----------------------------------~~~ig~~----~~~~~~~st  414 (623)
                         ..+...|+|+.... ..++.+++                                  +..+++.    ...++.+..
T Consensus       121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  200 (305)
T PRK14264        121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG  200 (305)
T ss_pred             HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence               00123477776420 01222222                                  2333332    344677899


Q ss_pred             ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcccc-ceeeCceE
Q 006974          415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKD-TRFENAAT  491 (623)
Q Consensus       415 fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~-~~i~~g~~  491 (623)
                      ||+||+ |++++++++.+|+++||||||+|||+.....+... +..+.+ +.++|++||+.+ +..+|+++ +.+.+|++
T Consensus       201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~-L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i  278 (305)
T PRK14264        201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDL-IEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGEL  278 (305)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence            999999 89999999999999999999999999999999984 445565 479999999987 46789986 45689988


Q ss_pred             EEe
Q 006974          492 EFS  494 (623)
Q Consensus       492 ~~~  494 (623)
                      ..+
T Consensus       279 ~~~  281 (305)
T PRK14264        279 VEY  281 (305)
T ss_pred             EEe
Confidence            755

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.90  E-value=3e-23  Score=209.30  Aligned_cols=151  Identities=16%  Similarity=0.194  Sum_probs=119.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----hh-----------------hhceeecCCCC----CCccH-
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----MS-----------------KAGLYLPAKNH----PRLPW-  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----~a-----------------~~G~~vp~~~~----~~l~~-  394 (623)
                      ++||++.+| ++++|+||||||||||+|++ |++.+    ..                 +...|+|+...    ..++. 
T Consensus         4 ~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~   82 (230)
T TIGR02770         4 DLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMG   82 (230)
T ss_pred             ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHH
Confidence            678999999 99999999999999999999 77654    11                 12346676641    11221 


Q ss_pred             --------------------HHHHHHHcCCc---hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974          395 --------------------FDLILADIGDH---QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV  450 (623)
Q Consensus       395 --------------------~d~i~~~ig~~---~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~  450 (623)
                                          +..++..+|+.   +..++.+++||+|++ |++++++++.+|+++||||||+|+|+....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~  162 (230)
T TIGR02770        83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA  162 (230)
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence                                12334555665   457889999999999 799999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          451 ALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       451 ~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+...+. .+.+ .+.|+|++||+.+ +..+|+++..+.+|++...
T Consensus       163 ~l~~~l~-~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  207 (230)
T TIGR02770       163 RVLKLLR-ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER  207 (230)
T ss_pred             HHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999555 4554 4789999999987 5579999999999998754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.90  E-value=1.5e-23  Score=241.06  Aligned_cols=162  Identities=20%  Similarity=0.208  Sum_probs=123.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----hc----eeecCCCCC-C-c
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----AG----LYLPAKNHP-R-L  392 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----~G----~~vp~~~~~-~-l  392 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |++.+...    .|    .++|+.... . .
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~   81 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG   81 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence            4789999999988666  999999999 99999999999999999999 66544210    01    133332100 0 0


Q ss_pred             cHH-------------------------------------------------------HHHHHHcCCchhhhcccccccH
Q 006974          393 PWF-------------------------------------------------------DLILADIGDHQSLEQNLSTFSG  417 (623)
Q Consensus       393 ~~~-------------------------------------------------------d~i~~~ig~~~~~~~~~stfS~  417 (623)
                      .++                                                       ..++..+|+.  .++.+++|||
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg  159 (635)
T PRK11147         82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG  159 (635)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence            001                                                       1122333432  2678999999


Q ss_pred             HHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          418 HIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       418 g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+ |++++++++.+|+++||||||+|||+.....|...+.++    +++||+||||.+ +..+|++++.+.+|++...
T Consensus       160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~  234 (635)
T PRK11147        160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRGKLVSY  234 (635)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEe
Confidence            999 899999999999999999999999999999888743332    469999999988 5679999999999988654

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.90  E-value=3.9e-23  Score=204.54  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=122.7

Q ss_pred             EEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---hhh------------------
Q 006974          327 MTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LMS------------------  378 (623)
Q Consensus       327 l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---~~a------------------  378 (623)
                      +.++||+|.|+    +..+  ++||++.+| ++++|+||||||||||++++ |+..   +..                  
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             EEEEccEEEeccCCCCceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            57899999995    3344  999999999 99999999999999999999 7765   210                  


Q ss_pred             hhceeecCCCC--CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974          379 KAGLYLPAKNH--PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS  455 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a  455 (623)
                      +...|+|+...  ..+++.+++......  ..++.+..||+||+ |++++++++.+|+++||||||+|+|+.....+...
T Consensus        83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~  160 (202)
T cd03233          83 GEIIYVSEEDVHFPTLTVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC  160 (202)
T ss_pred             ceEEEEecccccCCCCcHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHH
Confidence            11235565431  123445554321111  15678899999999 79999999999999999999999999999999995


Q ss_pred             HHHHHhcC-CcEEEEE-cCch-hHHhhccccceeeCceEEE
Q 006974          456 ILQYLRDR-VGLAVVT-THYA-DLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       456 ll~~l~~~-~~~vii~-TH~~-~l~~~~~~~~~i~~g~~~~  493 (623)
                      + ..+.+. +.++|++ +|+. ++..+|+++..+.+|++..
T Consensus       161 l-~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~  200 (202)
T cd03233         161 I-RTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY  200 (202)
T ss_pred             H-HHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence            4 455543 5665555 5554 4778999999999998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.7e-23  Score=205.00  Aligned_cols=167  Identities=18%  Similarity=0.219  Sum_probs=126.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------h--------------hhhc
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------M--------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------~--------------a~~G  381 (623)
                      .++++||+..|+++.+  ++|.++++| +-++|+|||||||||||+++ |-..+       +              .++|
T Consensus        31 li~l~~v~v~r~gk~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG  109 (257)
T COG1119          31 LIELKNVSVRRNGKKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG  109 (257)
T ss_pred             eEEecceEEEECCEeeccccceeecCC-CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence            4889999999999888  999999999 99999999999999999999 32211       0              1112


Q ss_pred             e--------eecCCC---------CCCccH------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          382 L--------YLPAKN---------HPRLPW------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       382 ~--------~vp~~~---------~~~l~~------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      .        |.+...         +..++.            ...++..+|.....+++..+||-|++ ++-++++++.+
T Consensus       110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~  189 (257)
T COG1119         110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD  189 (257)
T ss_pred             ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence            1        000000         011111            22457788888889999999999999 57777889999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~--~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |.|||||||++|+|...+..+.. .+..+...  +.++|+|||+.+ +..-.++...+.+|++...
T Consensus       190 P~LLiLDEP~~GLDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~  254 (257)
T COG1119         190 PELLILDEPAQGLDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ  254 (257)
T ss_pred             CCEEEecCccccCChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence            99999999999999999999988 44455543  568999999977 4455567777888876543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.7e-23  Score=238.23  Aligned_cols=167  Identities=14%  Similarity=0.176  Sum_probs=133.5

Q ss_pred             CcEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h------------
Q 006974          325 SEMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S------------  378 (623)
Q Consensus       325 ~~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a------------  378 (623)
                      .+++++||++.|++    ..+  ++||++.+| ++++|+||||||||||+|+| |++.+.       .            
T Consensus        11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~   89 (623)
T PRK10261         11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE   89 (623)
T ss_pred             ceEEEeceEEEecCCCCceeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence            36899999999963    233  999999999 99999999999999999999 665320       0            


Q ss_pred             --------------hhceeecCCC----CCCccHH----------------------HHHHHHcCCc---hhhhcccccc
Q 006974          379 --------------KAGLYLPAKN----HPRLPWF----------------------DLILADIGDH---QSLEQNLSTF  415 (623)
Q Consensus       379 --------------~~G~~vp~~~----~~~l~~~----------------------d~i~~~ig~~---~~~~~~~stf  415 (623)
                                    +...|+|+..    ...+++.                      ..++..+|+.   ..+++.+++|
T Consensus        90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L  169 (623)
T PRK10261         90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL  169 (623)
T ss_pred             cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence                          0124677753    1112222                      2345667774   3578899999


Q ss_pred             cHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          416 SGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       416 S~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                      ||||+ |+.+|++++.+|++|||||||+|||+.....+.+ ++..+.+ .|.|+|++||+.+ +..+||+++.+.+|++.
T Consensus       170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~  248 (623)
T PRK10261        170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV  248 (623)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence            99999 8999999999999999999999999999999999 6666764 4889999999987 56899999999999876


Q ss_pred             E
Q 006974          493 F  493 (623)
Q Consensus       493 ~  493 (623)
                      .
T Consensus       249 ~  249 (623)
T PRK10261        249 E  249 (623)
T ss_pred             c
Confidence            4

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.90  E-value=2e-23  Score=224.33  Aligned_cols=164  Identities=17%  Similarity=0.162  Sum_probs=131.1

Q ss_pred             ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h--------------------h
Q 006974          330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S--------------------K  379 (623)
Q Consensus       330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a--------------------~  379 (623)
                      .++.+.||...+  ++||++.+| ++++|+||||||||||||+| |++.+-       .                    +
T Consensus        28 ~~~~~~~g~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~  106 (382)
T TIGR03415        28 EEILDETGLVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH  106 (382)
T ss_pred             HHHHHhhCCEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence            346677776554  999999999 99999999999999999999 665421       0                    1


Q ss_pred             hceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          380 AGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       380 ~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ...|+|+...  ..+++.                     ..++..+|+.+..++.+..|||||+ |+.++++++.+|+++
T Consensus       107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL  186 (382)
T TIGR03415       107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL  186 (382)
T ss_pred             CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            2346777641  111222                     2346677888888999999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+||||..+..+...+.+...+.+.|+|++||+++ +..+|+++..+.+|++...
T Consensus       187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~  246 (382)
T TIGR03415       187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQH  246 (382)
T ss_pred             EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999666543445889999999988 4689999999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.90  E-value=2.1e-23  Score=236.73  Aligned_cols=162  Identities=25%  Similarity=0.258  Sum_probs=131.2

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC--CccH-
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP--RLPW-  394 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~--~l~~-  394 (623)
                      .++++|+++.|++..+ ++++++.+| ++++|+||||||||||||++ |++.+..      ....|+|+....  .+++ 
T Consensus       340 ~l~~~~ls~~~~~~~l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~  418 (590)
T PRK13409        340 LVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVE  418 (590)
T ss_pred             EEEEcceEEEECCEEEEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHH
Confidence            5789999999987545 889999999 99999999999999999999 7765431      112467776321  1111 


Q ss_pred             ---------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974          395 ---------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       395 ---------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~  458 (623)
                                     .+.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+..+..+...+.+
T Consensus       419 e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~  498 (590)
T PRK13409        419 DLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR  498 (590)
T ss_pred             HHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence                           23456778888889999999999999 89999999999999999999999999999999995544


Q ss_pred             HHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          459 YLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       459 ~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      ...+.+.|+|++|||.+ +..+||+++.+.+
T Consensus       499 l~~~~g~tviivsHD~~~~~~~aDrvivl~~  529 (590)
T PRK13409        499 IAEEREATALVVDHDIYMIDYISDRLMVFEG  529 (590)
T ss_pred             HHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence            33445889999999988 5578999888865

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.90  E-value=2.9e-23  Score=207.61  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=122.1

Q ss_pred             EEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------------hh
Q 006974          328 TVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------------KA  380 (623)
Q Consensus       328 ~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------------~~  380 (623)
                      .+.|+.++|++ ..+  +++|++.+| ++++|+|||||||||||++| |++.+..                       +.
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence            46788899964 334  999999999 99999999999999999999 6653210                       11


Q ss_pred             ceeecCCCCC-CccHHH--------------HHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          381 GLYLPAKNHP-RLPWFD--------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       381 G~~vp~~~~~-~l~~~d--------------~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      -.|+|+.... ..+..+              .++..+++...           ++..+.+||+||+ |+.++++++.+|+
T Consensus        81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  160 (218)
T cd03290          81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN  160 (218)
T ss_pred             EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            2366665410 112222              22333343322           2356789999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974          434 LVLIDEIGSGTDPSEGVALATS-ILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA  490 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~a-ll~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~  490 (623)
                      ++||||||+|||+.....+... +++.+.+.+.|+|++||+.+....|+++..+.+|+
T Consensus       161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            9999999999999999999884 67777777889999999988656788888777663

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.90  E-value=3.1e-23  Score=233.38  Aligned_cols=167  Identities=20%  Similarity=0.239  Sum_probs=131.6

Q ss_pred             cEEEceeeeecCC-----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h--h-----------
Q 006974          326 EMTVGSLSKGISD-----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M--S-----------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~-----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~--a-----------  378 (623)
                      +++++||+++|++     ..+  ++||++.+| ++++|+||||||||||||++ |++.+      +  .           
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~  357 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP  357 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence            5788999999942     334  999999999 99999999999999999999 76532      1  0           


Q ss_pred             -------hhceeecCCCC--CCccHHH--------------------HHHHHcCCch-----hhhcccccccHHHH-HHH
Q 006974          379 -------KAGLYLPAKNH--PRLPWFD--------------------LILADIGDHQ-----SLEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       379 -------~~G~~vp~~~~--~~l~~~d--------------------~i~~~ig~~~-----~~~~~~stfS~g~~-rl~  423 (623)
                             +.-.|+|+...  ..+.+++                    .++..+|+.+     ..++.+++|||||+ |++
T Consensus       358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~  437 (520)
T TIGR03269       358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA  437 (520)
T ss_pred             hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence                   11247777631  1112211                    2355667653     46889999999999 899


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++++.+|+++||||||+|||+.....+...+. .+. +.+.++|++||+.+ +..+|++++.+.+|++...
T Consensus       438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~-~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~  509 (520)
T TIGR03269       438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL-KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI  509 (520)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999554 454 45889999999987 5679999999999988654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.90  E-value=1.6e-23  Score=204.94  Aligned_cols=133  Identities=23%  Similarity=0.252  Sum_probs=106.5

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhceeecCCCC---CCccH--
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAGLYLPAKNH---PRLPW--  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G~~vp~~~~---~~l~~--  394 (623)
                      ++||++.+| ++++|+||||||||||||++ |+..+.                     .+...|+|+...   ...++  
T Consensus        10 ~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~   88 (190)
T TIGR01166        10 GLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQ   88 (190)
T ss_pred             ceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHH
Confidence            899999999 99999999999999999999 665421                     112347777631   11111  


Q ss_pred             -------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 006974          395 -------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT  454 (623)
Q Consensus       395 -------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~  454 (623)
                                         ++.++..+|+.+..++.+++||+||+ |++++++++.+|+++||||||+|+|+.....+..
T Consensus        89 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~  168 (190)
T TIGR01166        89 DVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA  168 (190)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence                               12345667887788899999999999 8999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEEcCchhH
Q 006974          455 SILQYLRDRVGLAVVTTHYADL  476 (623)
Q Consensus       455 all~~l~~~~~~vii~TH~~~l  476 (623)
                      . +..+++++.++|++||+.++
T Consensus       169 ~-l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       169 I-LRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             H-HHHHHHcCCEEEEEeecccc
Confidence            5 45566668899999999763

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.89  E-value=4.8e-23  Score=233.49  Aligned_cols=161  Identities=17%  Similarity=0.198  Sum_probs=126.9

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC--CC
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--PR  391 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~--~~  391 (623)
                      +++++||+++|+ +..+  ++||++.+| ++++|+||||||||||||+| |++.+..        ....|+|+...  ..
T Consensus         6 ~l~i~~l~~~y~~~~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~   84 (556)
T PRK11819          6 IYTMNRVSKVVPPKKQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE   84 (556)
T ss_pred             EEEEeeEEEEeCCCCeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence            588999999998 6655  999999999 99999999999999999999 7765421        11247787642  12


Q ss_pred             ccHHHHH---------------------------------------------------------HHHcCCchhhhccccc
Q 006974          392 LPWFDLI---------------------------------------------------------LADIGDHQSLEQNLST  414 (623)
Q Consensus       392 l~~~d~i---------------------------------------------------------~~~ig~~~~~~~~~st  414 (623)
                      +++.+++                                                         +..+|+. ..++.+++
T Consensus        85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~  163 (556)
T PRK11819         85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTK  163 (556)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhh
Confidence            2333332                                                         1222332 24678899


Q ss_pred             ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       415 fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                      |||||+ |+.++++++.+|+++||||||+|||+.....+... +..+   ++|+|++||+.+ +..+|++++.+.+|.+.
T Consensus       164 LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~i~  239 (556)
T PRK11819        164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDY---PGTVVAVTHDRYFLDNVAGWILELDRGRGI  239 (556)
T ss_pred             cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence            999999 89999999999999999999999999999998884 3333   469999999988 56789999999999875

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=3.6e-23  Score=196.36  Aligned_cols=144  Identities=22%  Similarity=0.349  Sum_probs=110.1

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------HHHHH
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------FDLIL  399 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~-------~d~i~  399 (623)
                      ++|+++.|++..+  +++|++.+| ++++|+||||+|||||++++        .|.+.|..+...+..       ..+..
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l--------~g~~~~~~G~i~~~~~~~~~~~~~~~~   72 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAI--------AGLLKPTSGEILIDGKDIAKLPLEELR   72 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHH--------hCCCCCCccEEEECCEEcccCCHHHHH
Confidence            5688888976555  999999999 99999999999999999999        665555544222211       01111


Q ss_pred             HHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HH
Q 006974          400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LS  477 (623)
Q Consensus       400 ~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~  477 (623)
                      ..++.       +..||+||+ |+.++++++.+|+++||||||+|+|+.....+...+.+ +.+.+.++|++||+.+ +.
T Consensus        73 ~~i~~-------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~~~~  144 (157)
T cd00267          73 RRIGY-------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE-LAEEGRTVIIVTHDPELAE  144 (157)
T ss_pred             hceEE-------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHH
Confidence            11111       112999999 79999999999999999999999999999999995554 4554789999999988 45


Q ss_pred             hhccccceeeCc
Q 006974          478 CLKDKDTRFENA  489 (623)
Q Consensus       478 ~~~~~~~~i~~g  489 (623)
                      .+|++...+.+|
T Consensus       145 ~~~d~i~~l~~g  156 (157)
T cd00267         145 LAADRVIVLKDG  156 (157)
T ss_pred             HhCCEEEEEeCc
Confidence            667988888765

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.89  E-value=5e-23  Score=223.85  Aligned_cols=159  Identities=19%  Similarity=0.244  Sum_probs=133.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--------------  389 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~--------------  389 (623)
                      .++++|++|+||+..+  ++||++.+| ++++|+|.||+|||||+|++        +|.|.|.+|.              
T Consensus         8 ll~~~~i~K~FggV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiL--------sGv~~p~~G~I~~~G~~~~~~sp~   78 (500)
T COG1129           8 LLELRGISKSFGGVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKIL--------SGVYPPDSGEILIDGKPVAFSSPR   78 (500)
T ss_pred             eeeeecceEEcCCceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHH--------hCcccCCCceEEECCEEccCCCHH
Confidence            4778999999998666  999999999 99999999999999999999        4444444431              


Q ss_pred             -----------------CCccHHH-------------------------HHHHHcCCchhhhcccccccHHHHH-HHHHH
Q 006974          390 -----------------PRLPWFD-------------------------LILADIGDHQSLEQNLSTFSGHISR-IVDIL  426 (623)
Q Consensus       390 -----------------~~l~~~d-------------------------~i~~~ig~~~~~~~~~stfS~g~~r-l~~~~  426 (623)
                                       +.+++.+                         .++.++|.....+..+.+||.+++| +.+|+
T Consensus        79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIAr  158 (500)
T COG1129          79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIAR  158 (500)
T ss_pred             HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHH
Confidence                             1122222                         3466677755588999999999996 66667


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++..++++|||||||+.|+..+...|.. +++.|+++|.++|++||.++ +..+||++.++.+|....+
T Consensus       159 Al~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~  226 (500)
T COG1129         159 ALSFDARVLILDEPTAALTVKETERLFD-LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT  226 (500)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence            7999999999999999999999999999 88889999999999999976 8899999999999987653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.89  E-value=5.8e-23  Score=209.40  Aligned_cols=145  Identities=22%  Similarity=0.210  Sum_probs=112.9

Q ss_pred             cccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------hhceeecCCCCC--CccH-----------------HH
Q 006974          344 DIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP--RLPW-----------------FD  396 (623)
Q Consensus       344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~~G~~vp~~~~~--~l~~-----------------~d  396 (623)
                      ++++.+| ++++|+||||||||||||+| |++.+..       +...|+|+....  ..++                 ..
T Consensus        19 ~~~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~   97 (246)
T cd03237          19 GGSISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT   97 (246)
T ss_pred             cCCcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence            3456678 99999999999999999999 6665421       122467765321  1111                 12


Q ss_pred             HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       397 ~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+..+..+...+.+...+.+.++|++||+.+
T Consensus        98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~  177 (246)
T cd03237          98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII  177 (246)
T ss_pred             HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            355667777788899999999999 8999999999999999999999999999999999555443445789999999988


Q ss_pred             -HHhhccccceeeCc
Q 006974          476 -LSCLKDKDTRFENA  489 (623)
Q Consensus       476 -l~~~~~~~~~i~~g  489 (623)
                       +..+|++++.+.+.
T Consensus       178 ~~~~~~d~i~~l~~~  192 (246)
T cd03237         178 MIDYLADRLIVFEGE  192 (246)
T ss_pred             HHHHhCCEEEEEcCC
Confidence             55689998887553

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.89  E-value=4.6e-23  Score=233.53  Aligned_cols=163  Identities=23%  Similarity=0.292  Sum_probs=129.6

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCCC---C
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKNH---P  390 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~~---~  390 (623)
                      .+++++|+++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+..      .  ...|+|+...   .
T Consensus       321 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~  399 (552)
T TIGR03719       321 KVIEAENLSKGFGDKLLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP  399 (552)
T ss_pred             eEEEEeeEEEEECCeeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCC
Confidence            46899999999987655  999999999 99999999999999999999 7765321      1  1247777531   1


Q ss_pred             CccHH-------------------HHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974          391 RLPWF-------------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG  449 (623)
Q Consensus       391 ~l~~~-------------------d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~  449 (623)
                      .+++.                   ..++..+|+.. ..++.+++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus       400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~  479 (552)
T TIGR03719       400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL  479 (552)
T ss_pred             CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence            11222                   23456677753 56889999999999 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC-ceEE
Q 006974          450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE  492 (623)
Q Consensus       450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~-g~~~  492 (623)
                      ..+...+.+ +   ++++|++|||.+ +..+|++++.+.+ |.+.
T Consensus       480 ~~l~~~l~~-~---~~~viivsHd~~~~~~~~d~i~~l~~~~~~~  520 (552)
T TIGR03719       480 RALEEALLE-F---AGCAVVISHDRWFLDRIATHILAFEGDSHVE  520 (552)
T ss_pred             HHHHHHHHH-C---CCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence            999985444 3   358999999988 5678999999986 4554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.5e-22  Score=214.61  Aligned_cols=168  Identities=18%  Similarity=0.235  Sum_probs=130.9

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------  376 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------------  376 (623)
                      .+.++++|++++|.+  ..+  ++||++.+| ++++|+|||||||||||+++ |+..+                      
T Consensus        78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             CceEEEEeeEEEecCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            357999999999953  334  999999999 99999999999999999999 76531                      


Q ss_pred             ----hhhhceeecCCCCC-CccHHHH----------------------HHHHcCC----chhhhcccccccHHHH-HHHH
Q 006974          377 ----MSKAGLYLPAKNHP-RLPWFDL----------------------ILADIGD----HQSLEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       377 ----~a~~G~~vp~~~~~-~l~~~d~----------------------i~~~ig~----~~~~~~~~stfS~g~~-rl~~  424 (623)
                          +.+...|+|+.... ..+..++                      ++..+++    ...++....+||||++ |+++
T Consensus       157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L  236 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI  236 (329)
T ss_pred             chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence                01223577776421 1122222                      2333443    2346788999999999 8999


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++++.+|+++||||||+|+|+.....+... +..+.+ ++|+|++||+++ +..+||+++.+.+|++...
T Consensus       237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~  305 (329)
T PRK14257        237 ARAIALEPEVLLMDEPTSALDPIATAKIEEL-ILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEA  305 (329)
T ss_pred             HHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999998884 455555 589999999998 5678999999999988654

>PLN03073 ABC transporter F family; Provisional

Probab=99.89  E-value=5.2e-23  Score=237.71  Aligned_cols=164  Identities=17%  Similarity=0.175  Sum_probs=130.8

Q ss_pred             CCcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCCC
Q 006974          324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR  391 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~~  391 (623)
                      ...++++||++.|++ ..+  ++||++.+| ++++|+||||||||||||+| |++.+..        ....|+|+.....
T Consensus       506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~  584 (718)
T PLN03073        506 PPIISFSDASFGYPGGPLLFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG  584 (718)
T ss_pred             CceEEEEeeEEEeCCCCeeEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence            457999999999964 434  999999999 99999999999999999999 7765421        0123666643111


Q ss_pred             cc-------------------HHHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974          392 LP-------------------WFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV  450 (623)
Q Consensus       392 l~-------------------~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~  450 (623)
                      +.                   .+..++..+|+.+ ..++++++|||||+ |++++++++.+|++|||||||+|||+....
T Consensus       585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~  664 (718)
T PLN03073        585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE  664 (718)
T ss_pred             CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            10                   1234567778764 57889999999999 899999999999999999999999999998


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          451 ALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       451 ~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                      .+...+.++    ++|+|++||+.+ +..+|++++.+.+|.+.
T Consensus       665 ~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~  703 (718)
T PLN03073        665 ALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVT  703 (718)
T ss_pred             HHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            887755443    459999999988 56789999999999886

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.89  E-value=5.5e-23  Score=233.00  Aligned_cols=163  Identities=22%  Similarity=0.273  Sum_probs=129.8

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------h--hceeecCCC-C--C
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------K--AGLYLPAKN-H--P  390 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~--~G~~vp~~~-~--~  390 (623)
                      .+++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+..      .  ...|+|+.. .  .
T Consensus       323 ~~l~~~~l~~~~~~~~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~  401 (556)
T PRK11819        323 KVIEAENLSKSFGDRLLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP  401 (556)
T ss_pred             eEEEEEeEEEEECCeeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCC
Confidence            36899999999987665  999999999 99999999999999999999 7764321      1  124777763 1  1


Q ss_pred             CccHHH-------------------HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974          391 RLPWFD-------------------LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEG  449 (623)
Q Consensus       391 ~l~~~d-------------------~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~  449 (623)
                      .+++++                   .++..+|+.+ ..++.+++|||||+ |++++++++.+|+++||||||+|||+...
T Consensus       402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~  481 (556)
T PRK11819        402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETL  481 (556)
T ss_pred             CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence            122222                   3456677753 56889999999999 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC-ceEE
Q 006974          450 VALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN-AATE  492 (623)
Q Consensus       450 ~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~-g~~~  492 (623)
                      ..+...+.+ +   ++++|++||+.+ +..+|++++.+.+ |.+.
T Consensus       482 ~~l~~~l~~-~---~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~  522 (556)
T PRK11819        482 RALEEALLE-F---PGCAVVISHDRWFLDRIATHILAFEGDSQVE  522 (556)
T ss_pred             HHHHHHHHh-C---CCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence            999985444 3   348999999988 5678999988886 5554

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.89  E-value=1.5e-22  Score=210.11  Aligned_cols=169  Identities=16%  Similarity=0.082  Sum_probs=126.6

Q ss_pred             CCCcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCC-Ccc
Q 006974          323 ENSEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLP  393 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~-~l~  393 (623)
                      +...++++|+++. +...+ ++||++.+| ++++|+|||||||||||++| |++.+.+.      ...|+|+.... ..+
T Consensus        36 ~~~~l~i~nls~~-~~~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~t  113 (282)
T cd03291          36 DDNNLFFSNLCLV-GAPVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGT  113 (282)
T ss_pred             CCCeEEEEEEEEe-cccceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccC
Confidence            4567899999986 33233 999999999 99999999999999999999 66654321      12366765410 012


Q ss_pred             HHHHH--------------HHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          394 WFDLI--------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       394 ~~d~i--------------~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                      +.+++              +..+++.+.+           ....+.||+|++ |+.++++++.+|+++||||||+|||+.
T Consensus       114 v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~  193 (282)
T cd03291         114 IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF  193 (282)
T ss_pred             HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence            22222              2223333222           233579999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ....+...++..+.+ +.++|++||+.+....|++++.+.+|.+.+.
T Consensus       194 ~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~  239 (282)
T cd03291         194 TEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFY  239 (282)
T ss_pred             HHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence            999888756665554 6899999999986678999999999998754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.89  E-value=7.7e-23  Score=231.67  Aligned_cols=163  Identities=18%  Similarity=0.199  Sum_probs=126.9

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCC--CC
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNH--PR  391 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~--~~  391 (623)
                      +++++||+++|+ ++.+  ++||++.+| ++++|+||||||||||||+| |++.+..        ....|+|+...  ..
T Consensus         4 ~i~~~nls~~~~~~~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~   82 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT   82 (552)
T ss_pred             EEEEeeEEEecCCCCeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence            688999999997 5555  999999999 99999999999999999999 7764321        11247777642  12


Q ss_pred             ccHHHHHH---------------------------------------------------------HHcCCchhhhccccc
Q 006974          392 LPWFDLIL---------------------------------------------------------ADIGDHQSLEQNLST  414 (623)
Q Consensus       392 l~~~d~i~---------------------------------------------------------~~ig~~~~~~~~~st  414 (623)
                      +++.+++.                                                         ..+|+. ..++.+++
T Consensus        83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~  161 (552)
T TIGR03719        83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTK  161 (552)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhh
Confidence            23333321                                                         111221 14678899


Q ss_pred             ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          415 FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       415 fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                      |||||+ |+.++++++.+|+++||||||+|||+.....+...+.++    ++++|++||+.+ +..+|++++.+.+|++.
T Consensus       162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i~  237 (552)
T TIGR03719       162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRGI  237 (552)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence            999999 899999999999999999999999999999888844332    469999999988 66789999999999875


Q ss_pred             Ee
Q 006974          493 FS  494 (623)
Q Consensus       493 ~~  494 (623)
                      +.
T Consensus       238 ~~  239 (552)
T TIGR03719       238 PW  239 (552)
T ss_pred             Ee
Confidence            43

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.8e-22  Score=207.60  Aligned_cols=166  Identities=16%  Similarity=0.162  Sum_probs=127.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------h-------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------M-------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------~-------------------  377 (623)
                      .+.++++++.|++..+  +++|++.+| ++++|+||||+|||||+|++ |++.+      -                   
T Consensus         8 ~~~~~~~~~~~~~~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~   86 (261)
T PRK14263          8 VMDCKLDKIFYGNFMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV   86 (261)
T ss_pred             eEEEEeEEEEeCCEEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence            4678889999987655  999999999 99999999999999999999 77532      0                   


Q ss_pred             -hhhceeecCCCCC-CccHHH--------------------HHHHHcCCch----hhhcccccccHHHH-HHHHHHHhcC
Q 006974          378 -SKAGLYLPAKNHP-RLPWFD--------------------LILADIGDHQ----SLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       378 -a~~G~~vp~~~~~-~l~~~d--------------------~i~~~ig~~~----~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                       .+...|+|+.... .+..++                    .++..+++..    ..++..+.||+||+ |++++++++.
T Consensus        87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~  166 (261)
T PRK14263         87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT  166 (261)
T ss_pred             hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence             0113466665421 122222                    2334444432    33466789999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee--------CceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE--------NAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~--------~g~~~~~  494 (623)
                      +|+++||||||+|+|+.....+...+ ..+.+ +.|+|++||+.+ +..+||++..+.        +|++...
T Consensus       167 ~p~llllDEPtsgLD~~~~~~l~~~l-~~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~  237 (261)
T PRK14263        167 EPEVLLLDEPCSALDPIATRRVEELM-VELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM  237 (261)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHH-HHHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence            99999999999999999999999955 45554 689999999988 678999999885        6776643

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.89  E-value=8.2e-23  Score=229.35  Aligned_cols=163  Identities=18%  Similarity=0.241  Sum_probs=129.8

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-------------hhcee
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a-------------~~G~~  383 (623)
                      +++++|+++.    .+ ++||++.+| ++++|+||||||||||||+| |++.+.       .             ....|
T Consensus       268 ~l~~~~l~~~----~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~  342 (510)
T PRK15439        268 VLTVEDLTGE----GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVY  342 (510)
T ss_pred             eEEEeCCCCC----CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEE
Confidence            5778888842    24 899999999 99999999999999999999 775421       0             11357


Q ss_pred             ecCCC-----CCCccH------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          384 LPAKN-----HPRLPW------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       384 vp~~~-----~~~l~~------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      +|+..     ...+++                        ++.++..+|+. +..++.+++|||||+ |+.++++++.+|
T Consensus       343 v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p  422 (510)
T PRK15439        343 LPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASP  422 (510)
T ss_pred             CCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCC
Confidence            77652     011111                        22445667776 678899999999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++|||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+||+++.+.+|++...
T Consensus       423 ~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~  484 (510)
T PRK15439        423 QLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA  484 (510)
T ss_pred             CEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999 55556667889999999987 5679999999999988753

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.89  E-value=6e-23  Score=254.04  Aligned_cols=169  Identities=21%  Similarity=0.240  Sum_probs=139.1

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhh
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA  380 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~  380 (623)
                      ...++++||+|.|++  +.+  ++||.+.+| ++++|+||||||||||+|+| |++.+-                  .+.
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence            357999999999985  334  999999999 99999999999999999999 776431                  112


Q ss_pred             ceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ..|+|+...  ..++.                     ++.++..+|+.+..++.+++|||||| |+++|++++.+|++||
T Consensus      2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257      2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred             EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            347888641  11111                     22346677888888999999999999 7999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|+||..+..+.. ++..+.++|.+||+|||+++ ...+|+++..+.+|++.+.
T Consensus      2094 LDEPTsGLDp~sr~~l~~-lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~ 2151 (2272)
T TIGR01257      2094 LDEPTTGMDPQARRMLWN-TIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL 2151 (2272)
T ss_pred             EECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999 55566666889999999987 5679999999999998765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=227.32  Aligned_cols=163  Identities=17%  Similarity=0.147  Sum_probs=127.6

Q ss_pred             EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-------------hhceee
Q 006974          327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------KAGLYL  384 (623)
Q Consensus       327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a-------------~~G~~v  384 (623)
                      ++++|++..   ..+ ++||++.+| ++++|+||||||||||||++ |++.+.       .             +...|+
T Consensus       258 l~~~~~~~~---~~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~  333 (501)
T PRK11288        258 LRLDGLKGP---GLREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLC  333 (501)
T ss_pred             EEEeccccC---CcccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEc
Confidence            556666632   233 999999999 99999999999999999999 775421       0             112366


Q ss_pred             cCCC-----CCCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcC
Q 006974          385 PAKN-----HPRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       385 p~~~-----~~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      |+..     ...++.                           +..++..+|+. +..++++.+|||||+ |+.++++++.
T Consensus       334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~  413 (501)
T PRK11288        334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE  413 (501)
T ss_pred             CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence            6642     000111                           22345667773 567899999999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|++|||||||+|||+.....+.. ++..+.+.|.++|++|||.+ +..+|++++.+.+|++.+.
T Consensus       414 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~  477 (501)
T PRK11288        414 DMKVILLDEPTRGIDVGAKHEIYN-VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE  477 (501)
T ss_pred             CCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEE
Confidence            999999999999999999999999 55567777899999999988 6689999999999987654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.7e-23  Score=228.62  Aligned_cols=166  Identities=12%  Similarity=0.150  Sum_probs=130.2

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~  383 (623)
                      +++++|+++.|. ..+ ++||++.+| ++++|+||||||||||||++ |+..+.                    .+...|
T Consensus       250 ~i~~~~l~~~~~-~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~  327 (491)
T PRK10982        250 ILEVRNLTSLRQ-PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL  327 (491)
T ss_pred             EEEEeCcccccC-cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence            577888888752 233 999999999 99999999999999999999 765421                    011236


Q ss_pred             ecCCCC-----CCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974          384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       384 vp~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      +|+...     ..+++                           +..++..+++. +..++++++|||||+ |+.++++++
T Consensus       328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  407 (491)
T PRK10982        328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL  407 (491)
T ss_pred             cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence            666421     11111                           12344556664 457889999999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|++|||||||+|+|+.....+.. ++..+.+.+.|+|++|||.+ +..+||+++.+.+|++...
T Consensus       408 ~~p~illLDEPt~gLD~~~~~~~~~-~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~  472 (491)
T PRK10982        408 TQPEILMLDEPTRGIDVGAKFEIYQ-LIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI  472 (491)
T ss_pred             cCCCEEEEcCCCcccChhHHHHHHH-HHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999 55667777899999999987 6689999999999988743

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.5e-22  Score=207.65  Aligned_cols=166  Identities=17%  Similarity=0.189  Sum_probs=134.3

Q ss_pred             EEEceeeeecCC-----ccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-hh---------------------
Q 006974          327 MTVGSLSKGISD-----FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LM---------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~-----~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-~~---------------------  377 (623)
                      ++++||+..|..     +.| ++||++.+| ++++|+|.+||||||+.++| |++. ..                     
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            578899999853     233 999999999 99999999999999999999 7774 20                     


Q ss_pred             ------hhhceeecCCCCCCccH---------------------------HHHHHHHcCCch---hhhcccccccHHHH-
Q 006974          378 ------SKAGLYLPAKNHPRLPW---------------------------FDLILADIGDHQ---SLEQNLSTFSGHIS-  420 (623)
Q Consensus       378 ------a~~G~~vp~~~~~~l~~---------------------------~d~i~~~ig~~~---~~~~~~stfS~g~~-  420 (623)
                            .+..+++||++...+..                           ...++..+|+.+   .++..+..|||||+ 
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                  11235777775322211                           113456677654   57899999999999 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+.+|++++.+|+|||.||||++||...++.+.. +++.+.+ .|.++|++|||+. ++.+||++.++..|.++..
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~  235 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE  235 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe
Confidence            7999999999999999999999999999999999 6666765 6889999999999 6789999999999988654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=221.09  Aligned_cols=167  Identities=17%  Similarity=0.159  Sum_probs=137.1

Q ss_pred             cEEEceeeeecCCc-----cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          326 EMTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~-----~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      .++++||++.|...     .+ ++||++.+| ++++|+|.+||||||+.+++ |++..-                     
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            57899999999532     23 999999999 99999999999999999999 776532                     


Q ss_pred             ------hhhceeecCCCCCCccH--------------------------HHHHHHHcCCchhhhc--ccccccHHHH-HH
Q 006974          378 ------SKAGLYLPAKNHPRLPW--------------------------FDLILADIGDHQSLEQ--NLSTFSGHIS-RI  422 (623)
Q Consensus       378 ------a~~G~~vp~~~~~~l~~--------------------------~d~i~~~ig~~~~~~~--~~stfS~g~~-rl  422 (623)
                            .....++||+....++.                          ..++|..+|+.+....  .+..|||||+ |+
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence                  12235788876443332                          1245777888766655  9999999999 79


Q ss_pred             HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      .+|++++.+|+|||+||||++||+.....|.+++.+.-.+.|.++|++|||+. +..+||++.++.+|.++.
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE  235 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE  235 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence            99999999999999999999999999999999555544467899999999999 678999999999998764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.89  E-value=1.3e-22  Score=207.77  Aligned_cols=154  Identities=19%  Similarity=0.208  Sum_probs=119.0

Q ss_pred             ceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh--------------------------
Q 006974          330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK--------------------------  379 (623)
Q Consensus       330 ~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~--------------------------  379 (623)
                      .+|+++|++.. +  ++++ +.+| ++++|+||||||||||||++ |+..+-+.                          
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence            47889997643 3  8884 8899 99999999999999999999 66542100                          


Q ss_pred             -----h-ceeecCCCCCCcc------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          380 -----A-GLYLPAKNHPRLP------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       380 -----~-G~~vp~~~~~~l~------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                           . ..++|+.. ..++                  .+..++..+|+.+..++.+.+||+|++ |+.++++++.+|++
T Consensus        82 ~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i  160 (255)
T cd03236          82 LLEGDVKVIVKPQYV-DLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF  160 (255)
T ss_pred             hhhcccceeeecchh-ccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence                 0 01223221 1111                  123456778888888899999999999 79999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceee
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFE  487 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~  487 (623)
                      +||||||+|+|+.....+.+ ++..+.+.++++|++||+++ +..+|+++..+.
T Consensus       161 lllDEPts~LD~~~~~~l~~-~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~  213 (255)
T cd03236         161 YFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY  213 (255)
T ss_pred             EEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC
Confidence            99999999999999999998 55566666889999999988 455899887774

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.89  E-value=6e-23  Score=196.17  Aligned_cols=128  Identities=34%  Similarity=0.464  Sum_probs=105.3

Q ss_pred             ccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh----------hceeecCCCCCCccHHHHHHHHcCCchhhhc
Q 006974          341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK----------AGLYLPAKNHPRLPWFDLILADIGDHQSLEQ  410 (623)
Q Consensus       341 v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~----------~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~  410 (623)
                      +++++.+.++ .+++|||||||||||+|++++++..+++          .|+++|+.. ..+     ++..++       
T Consensus        12 ~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----i~~~~~-------   77 (162)
T cd03227          12 VPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS-AEL-----IFTRLQ-------   77 (162)
T ss_pred             eccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE-EEE-----ehheee-------
Confidence            4677777777 7999999999999999999999999998          888888765 333     333332       


Q ss_pred             ccccccHHHH-HHHHHHHhcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974          411 NLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR  485 (623)
Q Consensus       411 ~~stfS~g~~-rl~~~~~l~~----~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~  485 (623)
                          +|+|++ ++.++..++.    +|+++|+|||++|||+.++..+..++.+++.+ ++++|++||+.++...+++...
T Consensus        78 ----lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~  152 (162)
T cd03227          78 ----LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLIH  152 (162)
T ss_pred             ----ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEE
Confidence                899998 5666666543    88999999999999999999999988887776 8899999999998888877665


Q ss_pred             ee
Q 006974          486 FE  487 (623)
Q Consensus       486 i~  487 (623)
                      +.
T Consensus       153 l~  154 (162)
T cd03227         153 IK  154 (162)
T ss_pred             EE
Confidence            53

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=1.5e-22  Score=189.97  Aligned_cols=166  Identities=20%  Similarity=0.271  Sum_probs=136.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhh-h---------------hhhhceeecCC
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLAS-L---------------MSKAGLYLPAK  387 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~-~---------------~a~~G~~vp~~  387 (623)
                      .++++|+.|+||...|  ++|+....| +++.|+|.+|||||||||||.++- +               ....|..+|++
T Consensus         6 ~l~v~dlHK~~G~~eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad   84 (256)
T COG4598           6 ALEVEDLHKRYGEHEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD   84 (256)
T ss_pred             ceehhHHHhhcccchhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence            5788999999998777  999999999 999999999999999999995542 1               12334455554


Q ss_pred             CC-------------------CCccHH----------------------HHHHHHcCCchhhhcccccccHHHH-HHHHH
Q 006974          388 NH-------------------PRLPWF----------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       388 ~~-------------------~~l~~~----------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~  425 (623)
                      ..                   ..+++.                      ..++..+|+.+..+.++..||||++ |++++
T Consensus        85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA  164 (256)
T COG4598          85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA  164 (256)
T ss_pred             HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence            20                   011111                      2347788999999999999999999 89999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEE
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEF  493 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~  493 (623)
                      ++++.+|.++|+||||+.|||+-...+.. ++..|.+.|.|.+++||.+.++ .++.+++.+.+|.++.
T Consensus       165 RaLameP~vmLFDEPTSALDPElVgEVLk-v~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE  232 (256)
T COG4598         165 RALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE  232 (256)
T ss_pred             HHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence            99999999999999999999999999988 8888999999999999999976 4677777788887654

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.88  E-value=1.8e-22  Score=188.20  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=134.9

Q ss_pred             cEEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh----------------------
Q 006974          326 EMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL----------------------  376 (623)
Q Consensus       326 ~l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~----------------------  376 (623)
                      +|+++++++..|..    .|  ++++.+.+| +.++|+||+||||||||-.+ ||-.+                      
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence            45566666665432    23  899999999 99999999999999999998 55321                      


Q ss_pred             -hhhhceeecCCCCCCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          377 -MSKAGLYLPAKNHPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       377 -~a~~G~~vp~~~~~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                       .+....||+|+. ..+|-                        ...++..+|+.+.+..++..||||++ |++++++++.
T Consensus        85 ~R~~~vGfVFQSF-~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~  163 (228)
T COG4181          85 LRARHVGFVFQSF-HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG  163 (228)
T ss_pred             hhccceeEEEEee-eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC
Confidence             122334677653 11111                        23568899999999999999999998 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEE
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE  492 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~  492 (623)
                      .|++++-||||.+||...+..++..+...-++.|.|.+++|||..++.-|++.+.+.+|+++
T Consensus       164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~  225 (228)
T COG4181         164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV  225 (228)
T ss_pred             CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence            99999999999999999999999977666667899999999999999999999999999875

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.88  E-value=2.5e-22  Score=200.39  Aligned_cols=148  Identities=16%  Similarity=0.127  Sum_probs=112.9

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhcee-------ecCC--C--CCCccHHHHH-----------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLY-------LPAK--N--HPRLPWFDLI-----------  398 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~-------vp~~--~--~~~l~~~d~i-----------  398 (623)
                      ++||++++| ++++|+||||||||||+|++ |+..+.  .|..       ++..  .  ...+++.+++           
T Consensus         5 ~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~   81 (213)
T PRK15177          5 KTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG   81 (213)
T ss_pred             eeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence            789999999 99999999999999999999 665432  1211       1110  0  0112222322           


Q ss_pred             -------HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974          399 -------LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT  470 (623)
Q Consensus       399 -------~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~  470 (623)
                             ...+++....++.++.||+||+ |++++++++.+|+++|||||++++|+.....+...+.+.+++  .++|++
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii~v  159 (213)
T PRK15177         82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLIVL  159 (213)
T ss_pred             HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEEEE
Confidence                   1223444556778999999999 899999999999999999999999999999998866665543  568999


Q ss_pred             cCchh-HHhhccccceeeCceEEEe
Q 006974          471 THYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       471 TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+++ +..+|+++..+.+|++.+.
T Consensus       160 sH~~~~~~~~~d~i~~l~~G~i~~~  184 (213)
T PRK15177        160 THNPRLIKEHCHAFGVLLHGKITMC  184 (213)
T ss_pred             ECCHHHHHHhcCeeEEEECCeEEEe
Confidence            99988 5579999999999998865

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.88  E-value=3.3e-22  Score=200.91  Aligned_cols=147  Identities=20%  Similarity=0.249  Sum_probs=116.3

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------hhceeecCCCCC----CccH-----------
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------KAGLYLPAKNHP----RLPW-----------  394 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------~~G~~vp~~~~~----~l~~-----------  394 (623)
                      |++.+| ++++|+||||||||||+|++ |+..+..              +...|+|+....    .+..           
T Consensus         1 l~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~   79 (223)
T TIGR03771         1 LSADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH   79 (223)
T ss_pred             CccCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence            467889 99999999999999999999 6654311              123567765311    0111           


Q ss_pred             --------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974          395 --------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY  459 (623)
Q Consensus       395 --------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~  459 (623)
                                    +..++..+|+.+..++.+++||+||+ |++++++++.+|+++|+||||+|+|+.....+... +..
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~-l~~  158 (223)
T TIGR03771        80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL-FIE  158 (223)
T ss_pred             cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH
Confidence                          22345666777777889999999999 79999999999999999999999999999999995 555


Q ss_pred             HhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          460 LRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       460 l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+++.|+|++||+.+ +..+|++++.+ +|++...
T Consensus       159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~  193 (223)
T TIGR03771       159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIAD  193 (223)
T ss_pred             HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence            6666889999999987 66799999888 7887654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.88  E-value=2.1e-22  Score=249.30  Aligned_cols=168  Identities=23%  Similarity=0.302  Sum_probs=137.6

Q ss_pred             CCcEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhh
Q 006974          324 NSEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKA  380 (623)
Q Consensus       324 ~~~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~  380 (623)
                      ...++++||+|.|+  ++.+  +++|++.+| ++++|+||||||||||||++ |++.+.                  .+.
T Consensus       926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~ 1004 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQS 1004 (2272)
T ss_pred             CceEEEEeEEEEecCCCceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhc
Confidence            34689999999995  3444  999999999 99999999999999999999 776431                  112


Q ss_pred             ceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          381 GLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       381 G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      ..|+|+...  ..+++                     +++++..+|+.+..++.+++|||||+ |+++|++++.+|++||
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            347787641  11111                     23456778888888999999999999 7999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+|+||..+..+.. ++..++ +|.++|++||+++ ...+||++..+.+|++...
T Consensus      1085 LDEPTSGLDp~sr~~l~~-lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257      1085 LDEPTSGVDPYSRRSIWD-LLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred             EECCCcCCCHHHHHHHHH-HHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999 455555 4889999999998 4568999999999998765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.88  E-value=2.6e-22  Score=224.90  Aligned_cols=163  Identities=15%  Similarity=0.206  Sum_probs=128.8

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhcee
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~  383 (623)
                      .++++|+++.    .+ ++||++.+| ++++|+||||||||||||++ |++.+.                    .+.-.|
T Consensus       257 ~l~~~~l~~~----~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~  331 (501)
T PRK10762        257 RLKVDNLSGP----GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY  331 (501)
T ss_pred             EEEEeCcccC----CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEE
Confidence            3567777752    24 899999999 99999999999999999999 775421                    011357


Q ss_pred             ecCCCC-----CCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhc
Q 006974          384 LPAKNH-----PRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       384 vp~~~~-----~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      +|+...     ..+++                           ++.++..+|+. ...++.+.+|||||+ |+.+|++++
T Consensus       332 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~  411 (501)
T PRK10762        332 ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM  411 (501)
T ss_pred             ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence            777631     11111                           22455667774 567889999999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+|||+.....+.. ++..+.++|.++|++||+.+ +..+|++++.+.+|++...
T Consensus       412 ~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  476 (501)
T PRK10762        412 TRPKVLILDEPTRGVDVGAKKEIYQ-LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE  476 (501)
T ss_pred             hCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999 45556666889999999987 6689999999999988654

>PLN03073 ABC transporter F family; Provisional

Probab=99.88  E-value=4.5e-22  Score=229.92  Aligned_cols=165  Identities=19%  Similarity=0.151  Sum_probs=123.8

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-hhhhhc--eeecCCCC-CCccH---
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMSKAG--LYLPAKNH-PRLPW---  394 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-~~a~~G--~~vp~~~~-~~l~~---  394 (623)
                      ..|.++|++++|++..+  ++||++.+| ++++|+||||||||||||+| |... -....|  .|+++... ..++.   
T Consensus       176 ~~I~i~nls~~y~~~~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~  254 (718)
T PLN03073        176 KDIHMENFSISVGGRDLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC  254 (718)
T ss_pred             eeEEEceEEEEeCCCEEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence            35899999999987666  999999999 99999999999999999999 4320 000011  12232200 00000   


Q ss_pred             ---------------------------------------------------------------------HHHHHHHcCCc
Q 006974          395 ---------------------------------------------------------------------FDLILADIGDH  405 (623)
Q Consensus       395 ---------------------------------------------------------------------~d~i~~~ig~~  405 (623)
                                                                                           ...++..+|+.
T Consensus       255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~  334 (718)
T PLN03073        255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT  334 (718)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence                                                                                 01123334443


Q ss_pred             -hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccc
Q 006974          406 -QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDK  482 (623)
Q Consensus       406 -~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~  482 (623)
                       ...++++++||||++ |++++++++.+|++|||||||+|||+.....|...+.+    .+.|+|++||+.+ +..+|++
T Consensus       335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~----~~~tviivsHd~~~l~~~~d~  410 (718)
T PLN03073        335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK----WPKTFIVVSHAREFLNTVVTD  410 (718)
T ss_pred             hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEECCHHHHHHhCCE
Confidence             345778999999999 89999999999999999999999999999888774433    3789999999988 5678999


Q ss_pred             cceeeCceEEEe
Q 006974          483 DTRFENAATEFS  494 (623)
Q Consensus       483 ~~~i~~g~~~~~  494 (623)
                      ++.+.+|++...
T Consensus       411 i~~l~~g~i~~~  422 (718)
T PLN03073        411 ILHLHGQKLVTY  422 (718)
T ss_pred             EEEEECCEEEEe
Confidence            999999988654

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.88  E-value=4.9e-22  Score=225.27  Aligned_cols=169  Identities=17%  Similarity=0.168  Sum_probs=131.0

Q ss_pred             CcEEEceeeeecCCc-----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------
Q 006974          325 SEMTVGSLSKGISDF-----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~-----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------  377 (623)
                      +.++++||+++|++.     ++  ++||++++| ++++|+||||||||||++++ |+..+-                   
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G-~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~  414 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQG-DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY  414 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence            468999999999752     34  999999999 99999999999999999999 544321                   


Q ss_pred             hhhceeecCCCCC---Cc-----c-----HHHHHHHHcCCchhhhc------ccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          378 SKAGLYLPAKNHP---RL-----P-----WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       378 a~~G~~vp~~~~~---~l-----~-----~~d~i~~~ig~~~~~~~------~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      ...-.++|++...   .+     +     -+.+.+...++.+.+..      ....||||++ |++++++++.+|+++||
T Consensus       415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil  494 (555)
T TIGR01194       415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF  494 (555)
T ss_pred             HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            1112355554310   00     0     12234556666655432      2368999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+++|+.....+.+.+++.+...+.|+|++||+.+....||++..+++|++..+
T Consensus       495 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       495 DEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999887776666668899999999987789999999999988644

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.88  E-value=5.1e-22  Score=224.82  Aligned_cols=168  Identities=17%  Similarity=0.180  Sum_probs=131.7

Q ss_pred             CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +.++++||+++|++ .++  ++||++++| +.++|+||||||||||+|++ |+..+.                   .+..
T Consensus       321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  399 (547)
T PRK10522        321 QTLELRNVTFAYQDNGFSVGPINLTIKRG-ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF  399 (547)
T ss_pred             ceEEEEEEEEEeCCCCeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence            35899999999964 334  999999999 99999999999999999999 655321                   1223


Q ss_pred             eeecCCCCCCcc-------------HHHHHHHHcCCchhhhcc-----cccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          382 LYLPAKNHPRLP-------------WFDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       382 ~~vp~~~~~~l~-------------~~d~i~~~ig~~~~~~~~-----~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      .|+|++.. .++             .+...+..+|.......+     -..||||++ |++++++++.+|+++||||||+
T Consensus       400 ~~v~q~~~-lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts  478 (547)
T PRK10522        400 SAVFTDFH-LFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA  478 (547)
T ss_pred             EEEecChh-HHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            46666541 110             122345566665544322     358999999 8999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++|+.....+.+.+.+.++..+.|+|++||+.+....||++..+++|++...
T Consensus       479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence            9999999999887766655557899999999988889999999999988654

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.88  E-value=2.5e-22  Score=229.96  Aligned_cols=167  Identities=20%  Similarity=0.251  Sum_probs=130.2

Q ss_pred             CCcEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974          324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~  379 (623)
                      .|.++++||+++|+..  .+  ++|+++++| +.++|+|+||||||||+|.+ |+..+                   +.+
T Consensus       469 ~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G-e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~  547 (709)
T COG2274         469 QGEIEFENVSFRYGPDDPPVLEDLSLEIPPG-EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR  547 (709)
T ss_pred             CceEEEEEEEEEeCCCCcchhhceeEEeCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence            3679999999999754  34  999999999 99999999999999999999 55543                   122


Q ss_pred             hceeecCCCCCCc--cHH------------HHH---HHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcC
Q 006974          380 AGLYLPAKNHPRL--PWF------------DLI---LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       380 ~G~~vp~~~~~~l--~~~------------d~i---~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      ...+||++.. .+  +..            +++   ...-|..+.           +...-+.||||+| |+++|+++..
T Consensus       548 ~ig~V~Q~~~-Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~  626 (709)
T COG2274         548 QVGYVLQDPF-LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS  626 (709)
T ss_pred             heeEEcccch-hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence            3346666541 11  011            122   222333333           3456788999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||++||+.....+.+.+.+..  .|+|+|++||.......||++++++.|++..+
T Consensus       627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~  688 (709)
T COG2274         627 KPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ  688 (709)
T ss_pred             CCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence            999999999999999999999888665542  25899999999999999999999999998765

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.87  E-value=4.9e-22  Score=212.24  Aligned_cols=158  Identities=20%  Similarity=0.265  Sum_probs=133.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--------------  389 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~--------------  389 (623)
                      .+++++++|.|++...  ++||++.+| ++.+|+|.||+|||||||++        .|.|.|.+|.              
T Consensus         4 ~l~~~~itK~f~~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL--------~G~~~P~~GeI~v~G~~v~~~sP~   74 (501)
T COG3845           4 ALEMRGITKRFPGVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKIL--------FGLYQPDSGEIRVDGKEVRIKSPR   74 (501)
T ss_pred             eEEEeccEEEcCCEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHH--------hCcccCCcceEEECCEEeccCCHH
Confidence            4789999999996444  899999999 99999999999999999999        5555555541              


Q ss_pred             -----------------CCccHHH------------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHH
Q 006974          390 -----------------PRLPWFD------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       390 -----------------~~l~~~d------------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                                       ..+++++                        .+..+.|+.=+.+..++.||.|++ |+.++.+
T Consensus        75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa  154 (501)
T COG3845          75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA  154 (501)
T ss_pred             HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence                             1122222                        345566777778899999999999 6888888


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      +..++++|||||||+-|-|.+...|.. +++.+++.|++||++||-++ +.++||+..++..|++.-
T Consensus       155 Lyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg  220 (501)
T COG3845         155 LYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG  220 (501)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence            999999999999999999999999999 78889999999999999975 889999999999998753

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=5.5e-22  Score=185.21  Aligned_cols=165  Identities=22%  Similarity=0.234  Sum_probs=122.1

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------------------------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------------  378 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------------------------  378 (623)
                      +++.++++.||...-  ++||.+.+| ++++|+|.+||||||||+++ |-+.+.+                         
T Consensus         7 L~V~~lsk~Yg~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~   85 (258)
T COG4107           7 LSVSGLSKLYGPGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR   85 (258)
T ss_pred             eeehhhhhhhCCCcCccccceeecCC-cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence            567889999986443  999999999 99999999999999999999 3322110                         


Q ss_pred             ----hhceeecCCCC----------CCccH---------H-------HHHHHHcCC-chhhhcccccccHHHH-HHHHHH
Q 006974          379 ----KAGLYLPAKNH----------PRLPW---------F-------DLILADIGD-HQSLEQNLSTFSGHIS-RIVDIL  426 (623)
Q Consensus       379 ----~~G~~vp~~~~----------~~l~~---------~-------d~i~~~ig~-~~~~~~~~stfS~g~~-rl~~~~  426 (623)
                          .-| ||-+.+.          ..++-         +       ..++.++.+ .+.++..+.+|||||+ |+.+|+
T Consensus        86 L~RTeWG-~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR  164 (258)
T COG4107          86 LLRTEWG-FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR  164 (258)
T ss_pred             Hhhhccc-eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence                011 2222110          01110         1       123444443 3457788999999999 899999


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh-hccccceeeCceEEE
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENAATEF  493 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~-~~~~~~~i~~g~~~~  493 (623)
                      .+++.|.|+++||||.|||..-.+.|...+.....+.+..++++|||+.++. ++++..++..|.+..
T Consensus       165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve  232 (258)
T COG4107         165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE  232 (258)
T ss_pred             HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence            9999999999999999999999999999444444466889999999998765 678888888887654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.6e-21  Score=190.50  Aligned_cols=167  Identities=23%  Similarity=0.273  Sum_probs=132.4

Q ss_pred             cEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------hhhh
Q 006974          326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------~a~~  380 (623)
                      +++++||+.+-+++ .+  ++|+++.+| ++.+|.||||||||||.++| |.-.|                     .|+.
T Consensus         3 ~L~I~dLhv~v~~~keILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~   81 (251)
T COG0396           3 MLEIKDLHVEVEGKKEILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA   81 (251)
T ss_pred             eeEEeeeEEEecCchhhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence            57899999999874 66  999999999 99999999999999999999 44322                     3677


Q ss_pred             ceeecCCCCCCccH---------------------------HHHHHHHcCCch-hhhcccc-cccHHHH-HHHHHHHhcC
Q 006974          381 GLYLPAKNHPRLPW---------------------------FDLILADIGDHQ-SLEQNLS-TFSGHIS-RIVDILELVS  430 (623)
Q Consensus       381 G~~vp~~~~~~l~~---------------------------~d~i~~~ig~~~-~~~~~~s-tfS~g~~-rl~~~~~l~~  430 (623)
                      |.|+..+..+.++.                           +...++.++... .+++.+. .||||++ |.-++..++.
T Consensus        82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l  161 (251)
T COG0396          82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL  161 (251)
T ss_pred             CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence            77664433233332                           122345556554 6677776 7999999 5555566899


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhc--cccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK--DKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~--~~~~~i~~g~~~~~  494 (623)
                      +|+++|||||-||+|...-..++. .++.+++.+..++++|||..+..+.  |.+-++.+|++...
T Consensus       162 ePkl~ILDE~DSGLDIdalk~V~~-~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s  226 (251)
T COG0396         162 EPKLAILDEPDSGLDIDALKIVAE-GINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS  226 (251)
T ss_pred             CCCEEEecCCCcCccHHHHHHHHH-HHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence            999999999999999999999998 6778888899999999999987765  77778899998876

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=5.6e-22  Score=213.31  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=130.0

Q ss_pred             cEEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH-------
Q 006974          326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW-------  394 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~-------  394 (623)
                      .++++||+|+|++..  +  ++||++.+| +.++|+|++||||||++..+        .|.|.|++|...+..       
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~G-EkvAIlG~SGsGKSTllqLl--------~~~~~~~~G~i~~~g~~~~~l~  406 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQG-EKVAILGRSGSGKSTLLQLL--------AGAWDPQQGSITLNGVEIASLD  406 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCC-CeEEEECCCCCCHHHHHHHH--------HhccCCCCCeeeECCcChhhCC
Confidence            689999999997654  4  999999999 99999999999999999999        777777766321110       


Q ss_pred             -------------------------------------HHHHHHHcCCchh-----------hhcccccccHHHH-HHHHH
Q 006974          395 -------------------------------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       395 -------------------------------------~d~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~  425 (623)
                                                           +..++..+|+.+.           +...-..||||++ |++++
T Consensus       407 ~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlA  486 (573)
T COG4987         407 EQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALA  486 (573)
T ss_pred             hhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHH
Confidence                                                 1123555555443           3445678999999 89999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+.++.+++||||||.||||.....+...+.+.+.  ++|+|++||+..-.+.+|++++++||+....
T Consensus       487 R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie~  553 (573)
T COG4987         487 RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIEE  553 (573)
T ss_pred             HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence            999999999999999999999999999986666544  7899999999988889999999999998765

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=7.1e-22  Score=200.11  Aligned_cols=150  Identities=20%  Similarity=0.172  Sum_probs=126.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hhhceeecCCCCCCccH---
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SKAGLYLPAKNHPRLPW---  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~~G~~vp~~~~~~l~~---  394 (623)
                      ++||+++.| ++++|.|-+|||||||+|++ +|+.+-                       .+.-+.|+|+. ..+|+   
T Consensus        46 ~~sl~v~~G-eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F-aLlPhrtV  123 (386)
T COG4175          46 DASLDVEEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF-ALLPHRTV  123 (386)
T ss_pred             cceeeecCC-eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh-ccccchhH
Confidence            889999999 99999999999999999999 666431                       12233455542 34443   


Q ss_pred             ---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHH
Q 006974          395 ---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVAL  452 (623)
Q Consensus       395 ---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l  452 (623)
                                           ....+..+|+.+..++++..|||||+ |+-+|++++++|+++|+|||++.|||--+..+
T Consensus       124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m  203 (386)
T COG4175         124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM  203 (386)
T ss_pred             hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence                                 22457889999999999999999999 89999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEE
Q 006974          453 ATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEF  493 (623)
Q Consensus       453 ~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~  493 (623)
                      -.-+++.-.+.+.|++|+|||++. ..+.+++-.+++|++.-
T Consensus       204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ  245 (386)
T COG4175         204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQ  245 (386)
T ss_pred             HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEE
Confidence            998888777778999999999884 47899999999998764

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.87  E-value=9.9e-22  Score=222.39  Aligned_cols=168  Identities=24%  Similarity=0.238  Sum_probs=128.7

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++|++++|++  ..+  +++|++++| +.++|+||||||||||+|++ |+..+-                   .+.
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~  393 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAG-EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH  393 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence            45899999999953  344  999999999 99999999999999999999 665431                   123


Q ss_pred             ceeecCCCCC-CccHHHHH---------------HH---------Hc--CCchhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          381 GLYLPAKNHP-RLPWFDLI---------------LA---------DI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       381 G~~vp~~~~~-~l~~~d~i---------------~~---------~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      ..|+|++... .-++.+++               +.         .+  |++..+.....+|||||+ |+++|++++.+|
T Consensus       394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~  473 (544)
T TIGR01842       394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP  473 (544)
T ss_pred             eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence            3577776421 00112222               11         22  222234455788999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+|+|+.....+.+.+. .+...+.|+|++||+.+....||+++.+.+|++...
T Consensus       474 ~ililDEpts~LD~~~~~~i~~~l~-~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~  534 (544)
T TIGR01842       474 KLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF  534 (544)
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHH-HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence            9999999999999999999988544 455457899999999987788999999999987643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.1e-21  Score=227.89  Aligned_cols=164  Identities=16%  Similarity=0.163  Sum_probs=129.1

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  +++  ++||++++| +.++|+||||||||||+|++ |+..+.                   .+.
T Consensus       450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  528 (686)
T TIGR03797       450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPG-EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ  528 (686)
T ss_pred             ceEEEEEEEEEcCCCCccceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence            46899999999952  345  999999999 99999999999999999999 665431                   223


Q ss_pred             ceeecCCCCCCc--cH--------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCC
Q 006974          381 GLYLPAKNHPRL--PW--------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       381 G~~vp~~~~~~l--~~--------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      ..|+||+.. .+  ++              +.+++...|+.+.+.           ..-+.||||++ |+++|++++.+|
T Consensus       529 i~~v~Q~~~-lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p  607 (686)
T TIGR03797       529 LGVVLQNGR-LMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP  607 (686)
T ss_pred             cEEEccCCc-cCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            457787752 11  11              223344445544432           34468999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+++|+.....+.+.+.+.    ++|+|++||..+....+|+++++++|++..+
T Consensus       608 ~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~  665 (686)
T TIGR03797       608 RILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ  665 (686)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence            999999999999999999988865442    5799999999997788999999999998754

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.87  E-value=1.4e-21  Score=213.95  Aligned_cols=170  Identities=16%  Similarity=0.124  Sum_probs=136.8

Q ss_pred             CCcEEEceeeeecCC------c---c---c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----------
Q 006974          324 NSEMTVGSLSKGISD------F---P---V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK----------  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~------~---~---v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----------  379 (623)
                      .-.++++||++.|..      .   .   | ++||++.+| ++++|+|++||||||+.|++ |+..+-+.          
T Consensus       278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~  356 (539)
T COG1123         278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD  356 (539)
T ss_pred             CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence            346789999999972      1   1   3 999999999 99999999999999999999 77654210          


Q ss_pred             -----------hceeecCCCCCCccH--------------------------HHHHHHHcCCch-hhhcccccccHHHH-
Q 006974          380 -----------AGLYLPAKNHPRLPW--------------------------FDLILADIGDHQ-SLEQNLSTFSGHIS-  420 (623)
Q Consensus       380 -----------~G~~vp~~~~~~l~~--------------------------~d~i~~~ig~~~-~~~~~~stfS~g~~-  420 (623)
                                 .-.+++|+.+..+.+                          ++.++..+|+.. .+++.+..||||++ 
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ  436 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ  436 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence                       011233333222211                          344578888876 58999999999999 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++|++++.+|.++++|||++.||+.....+.+.+.+.-.+.|.|.||+|||+. +..+||++.++.+|+++..
T Consensus       437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~  511 (539)
T COG1123         437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE  511 (539)
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence            8999999999999999999999999999999999666655566999999999999 5679999999999998755

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=7.2e-22  Score=187.79  Aligned_cols=160  Identities=19%  Similarity=0.285  Sum_probs=132.0

Q ss_pred             EEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---------------hhceeecC
Q 006974          327 MTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS---------------KAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---------------~~G~~vp~  386 (623)
                      +.+++++.+|++++  +  ++|+++.+| +.++++||+||||||||+.+ |++.+-.               .. ..|+|
T Consensus         4 l~~~~~sl~y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaer-gvVFQ   81 (259)
T COG4525           4 LNVSHLSLSYEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER-GVVFQ   81 (259)
T ss_pred             eehhheEEecCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccc-eeEec
Confidence            45678999998776  3  999999999 99999999999999999999 5554421               11 24555


Q ss_pred             CCCCCccHH------------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          387 KNHPRLPWF------------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       387 ~~~~~l~~~------------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +. ..+||.                        .+.+..+|+.+.-++.+-.|||||+ |+-++++++-+|.+++||||+
T Consensus        82 ~~-~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf  160 (259)
T COG4525          82 NE-ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF  160 (259)
T ss_pred             cC-ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence            53 556652                        2456778888888999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh-hccccceeeCc
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC-LKDKDTRFENA  489 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~-~~~~~~~i~~g  489 (623)
                      ..+|.-.+..+-..+++...+.|..++++||+.+.+- ++++.+++..+
T Consensus       161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~  209 (259)
T COG4525         161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPG  209 (259)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence            9999999999999999988888999999999988654 67777666543

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.87  E-value=3.9e-22  Score=213.89  Aligned_cols=164  Identities=24%  Similarity=0.272  Sum_probs=132.9

Q ss_pred             CcEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCcc-------
Q 006974          325 SEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLP-------  393 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~-------  393 (623)
                      -++.++||+|+|.+.+ +  +++|-++.+ ..++++||||+|||||||++ |.+.+.  .|...|..+ ..++       
T Consensus       388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~-srvAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H-~~~~~y~Qh~~  463 (614)
T KOG0927|consen  388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLD-SRVALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSH-NKLPRYNQHLA  463 (614)
T ss_pred             CeEEEeccccCCCCcchhhhhhhcccCcc-cceeEecCCCCchhhhHHHHhhccccc--ccccccccc-ccchhhhhhhH
Confidence            3688999999997663 3  899999999 89999999999999999999 555443  222222221 1222       


Q ss_pred             ------------------------HHHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          394 ------------------------WFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       394 ------------------------~~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                                              .+..++.++|+. +....++++||+|++ |+.+++..+..|.+|||||||+|+|..
T Consensus       464 e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~  543 (614)
T KOG0927|consen  464 EQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE  543 (614)
T ss_pred             hhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence                                    234567788876 667889999999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLE  496 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~  496 (623)
                      ...+++++|-++    .+++|++|||.. +..+++.++.+.|+.+....+
T Consensus       544 tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G  589 (614)
T KOG0927|consen  544 TIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDG  589 (614)
T ss_pred             hHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCc
Confidence            999999976665    889999999987 678999999999998776554

>PRK13409 putative ATPase RIL; Provisional

Probab=99.87  E-value=1.3e-21  Score=222.15  Aligned_cols=153  Identities=21%  Similarity=0.190  Sum_probs=120.0

Q ss_pred             eeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-h--------------hc----------
Q 006974          331 SLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K--------------AG----------  381 (623)
Q Consensus       331 ~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-~--------------~G----------  381 (623)
                      +++++||.+ ++  +++ .+.+| ++++|+||||+|||||||++ |++.+.. .              .|          
T Consensus        78 ~~~~~yg~~~~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             CceEEecCCceeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            488999864 34  888 79999 99999999999999999999 6654210 0              00          


Q ss_pred             -------eeecCCCCCCc------c------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          382 -------LYLPAKNHPRL------P------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       382 -------~~vp~~~~~~l------~------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                             .+.|+.. ...      .            -++.++..+|+....++.+++|||||+ |++++++++.+|+++
T Consensus       156 ~~~~~~~~~~~q~~-~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll  234 (590)
T PRK13409        156 YNGEIKVVHKPQYV-DLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY  234 (590)
T ss_pred             hccCcceeecccch-hhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence                   1222211 000      1            123456778888888999999999999 799999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      ||||||+|||+.....+.. ++..+.+ +.++|++||+++ +..++|++..+.+
T Consensus       235 lLDEPts~LD~~~~~~l~~-~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~  286 (590)
T PRK13409        235 FFDEPTSYLDIRQRLNVAR-LIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYG  286 (590)
T ss_pred             EEECCCCCCCHHHHHHHHH-HHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            9999999999999999999 5666777 899999999988 6678888877754

>PLN03211 ABC transporter G-25; Provisional

Probab=99.87  E-value=1.1e-21  Score=225.38  Aligned_cols=165  Identities=18%  Similarity=0.243  Sum_probs=130.5

Q ss_pred             EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCC
Q 006974          328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK  387 (623)
Q Consensus       328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~  387 (623)
                      .++|++++|+++.+  ++|+++.+| ++++|+|||||||||||+++ |....-                 .+...|+|++
T Consensus        70 ~~~~l~~~~~~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~  148 (659)
T PLN03211         70 KISDETRQIQERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD  148 (659)
T ss_pred             ccccccccCCCCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence            46678899987666  999999999 99999999999999999999 665321                 1123577776


Q ss_pred             CC--CCccH------------------------HHHHHHHcCCchhh-----hcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          388 NH--PRLPW------------------------FDLILADIGDHQSL-----EQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       388 ~~--~~l~~------------------------~d~i~~~ig~~~~~-----~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ..  ..+++                        ++.++..+|+.+..     +...+.|||||+ |++++++++.+|+++
T Consensus       149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL  228 (659)
T PLN03211        149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL  228 (659)
T ss_pred             cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence            41  11122                        22345556665433     345678999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+.. ++..+.++|.|+|++||+.+  +..++|++..+.+|++.+.
T Consensus       229 lLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~  288 (659)
T PLN03211        229 ILDEPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF  288 (659)
T ss_pred             EEeCCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEE
Confidence            9999999999999999999 55567767899999999975  5789999999999998775

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.87  E-value=1.7e-21  Score=221.72  Aligned_cols=166  Identities=18%  Similarity=0.177  Sum_probs=131.9

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  +.+  ++||++++| +.++|+||||||||||+|++ |+..+.                   .+.
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G-~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~  415 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAG-EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA  415 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence            46999999999964  334  999999999 99999999999999999999 665431                   122


Q ss_pred             ceeecCCCCCCc--c---------------HHHHHHHHcCCchhhhc----------ccccccHHHH-HHHHHHHhcCCC
Q 006974          381 GLYLPAKNHPRL--P---------------WFDLILADIGDHQSLEQ----------NLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       381 G~~vp~~~~~~l--~---------------~~d~i~~~ig~~~~~~~----------~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      ..|+||+.. .+  +               -+.+.+...|+.+.+++          ....||||++ |+++|++++.+|
T Consensus       416 i~~v~Q~~~-lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~  494 (574)
T PRK11160        416 ISVVSQRVH-LFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA  494 (574)
T ss_pred             eeEEcccch-hhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            357777641 11  1               12334556666666554          5678999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+++|+.....+..++.+ +. ++.|+|++||+.+....||++..+++|++...
T Consensus       495 ~ililDE~ts~lD~~t~~~i~~~l~~-~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~  554 (574)
T PRK11160        495 PLLLLDEPTEGLDAETERQILELLAE-HA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ  554 (574)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH-Hc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence            99999999999999999999996554 43 37899999999987777999999999988654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.86  E-value=5e-22  Score=184.70  Aligned_cols=149  Identities=26%  Similarity=0.322  Sum_probs=120.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhh-hhh-------------------hhhceeecCCC---------CCCc
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA-SLM-------------------SKAGLYLPAKN---------HPRL  392 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~~-------------------a~~G~~vp~~~---------~~~l  392 (623)
                      |+||.+.+| +.++||||+|||||||+|+++.+ .+-                   .|-.+|+-+.+         +..+
T Consensus        21 ~isl~v~~G-e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlif   99 (223)
T COG4619          21 NISLSVRAG-EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF   99 (223)
T ss_pred             ceeeeecCC-ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhcccc
Confidence            999999999 99999999999999999999543 221                   12222333322         0122


Q ss_pred             cH-----------HHHHHHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974          393 PW-----------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY  459 (623)
Q Consensus       393 ~~-----------~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~  459 (623)
                      |+           +-.+++++++.+. +.+++..+|||++ |+++++.+..-|+++||||||+.||+.....+...|..+
T Consensus       100 P~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~  179 (223)
T COG4619         100 PWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY  179 (223)
T ss_pred             chHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence            22           3356788887764 6788999999999 799999999999999999999999999999999988888


Q ss_pred             HhcCCcEEEEEcCchhH-HhhccccceeeCceE
Q 006974          460 LRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT  491 (623)
Q Consensus       460 l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~  491 (623)
                      .+++...++++|||.+- ...+++++.+..|+.
T Consensus       180 v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         180 VREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             hhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            88888999999999875 678899888888764

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.86  E-value=1.4e-21  Score=223.07  Aligned_cols=166  Identities=14%  Similarity=0.141  Sum_probs=128.9

Q ss_pred             CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +.++++||+++|++ ..+  ++|+++.+| +.++|+||||||||||+|++ |+..+-                   .+.-
T Consensus       333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i  411 (588)
T PRK13657        333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPG-QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI  411 (588)
T ss_pred             CeEEEEEEEEEeCCCCceecceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            35899999999964 445  999999999 99999999999999999999 665431                   1234


Q ss_pred             eeecCCCCCCc--cHHH---------------HHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCC
Q 006974          382 LYLPAKNHPRL--PWFD---------------LILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       382 ~~vp~~~~~~l--~~~d---------------~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      +|+||+.. .+  ++.+               ..+...|+.+.           +......||||++ |+++|++++.+|
T Consensus       412 ~~v~Q~~~-lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~  490 (588)
T PRK13657        412 AVVFQDAG-LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP  490 (588)
T ss_pred             EEEecCcc-cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            67888752 11  1111               22333343322           2334467999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+++|+.....+.+.+.+ +. .++|+|++||+.+....+|+++.+.+|++...
T Consensus       491 ~iliLDEpts~LD~~t~~~i~~~l~~-~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~  550 (588)
T PRK13657        491 PILILDEATSALDVETEAKVKAALDE-LM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVES  550 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHH-Hh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999886554 33 36899999999998888999999999987643

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=222.34  Aligned_cols=166  Identities=15%  Similarity=0.170  Sum_probs=128.5

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  .++  ++|+++++| +.++|+||||||||||+|++ |+..+-                   .+.
T Consensus       340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  418 (582)
T PRK11176        340 GDIEFRNVTFTYPGKEVPALRNINFKIPAG-KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ  418 (582)
T ss_pred             CeEEEEEEEEecCCCCCccccCceEEeCCC-CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence            35899999999964  344  999999999 99999999999999999999 776541                   123


Q ss_pred             ceeecCCCCCCcc--H----------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcC
Q 006974          381 GLYLPAKNHPRLP--W----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       381 G~~vp~~~~~~l~--~----------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      -.|+||+.. .++  +                +...+...|+.+.+.           ..-..||||++ |+++|++++.
T Consensus       419 i~~v~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~  497 (582)
T PRK11176        419 VALVSQNVH-LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_pred             ceEEccCce-eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            357888752 111  1                112233334333222           22366999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||+++|+.....+..++.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus       498 ~~~ililDEptsaLD~~t~~~i~~~l~~-~~~-~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~  559 (582)
T PRK11176        498 DSPILILDEATSALDTESERAIQAALDE-LQK-NRTSLVIAHRLSTIEKADEILVVEDGEIVER  559 (582)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999986654 433 6899999999998888999999999987643

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.2e-21  Score=208.93  Aligned_cols=167  Identities=16%  Similarity=0.158  Sum_probs=135.2

Q ss_pred             CCcEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh------h------------hhhhc
Q 006974          324 NSEMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS------L------------MSKAG  381 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~------~------------~a~~G  381 (623)
                      ++.|+++||+++|+++. |  +++|+++.| +.++|+|+|||||||+||++ ....      +            +.++.
T Consensus       349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kG-ekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I  427 (591)
T KOG0057|consen  349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKG-EKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI  427 (591)
T ss_pred             CCcEEEEeeEEEeCCCCceecceeEEecCC-CEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence            35699999999998766 6  999999999 99999999999999999999 3332      2            34566


Q ss_pred             eeecCCCCCCcc--H------------HH---HHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCC
Q 006974          382 LYLPAKNHPRLP--W------------FD---LILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       382 ~~vp~~~~~~l~--~------------~d---~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      .+|||+. ..+.  +            ++   ++..+.|+.|.+.           ..--.||||+| |++++++++.+|
T Consensus       428 g~VPQd~-~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda  506 (591)
T KOG0057|consen  428 GVVPQDS-VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA  506 (591)
T ss_pred             eEeCCcc-cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence            7999986 2221  1            11   2334445554433           34457999999 799999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++++||||+.||...-..+...+..  ...+.|+|++-|++.+..-+|++..++||++...
T Consensus       507 ~Il~~DEaTS~LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~  566 (591)
T KOG0057|consen  507 PILLLDEATSALDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY  566 (591)
T ss_pred             CeEEecCcccccchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence            99999999999999999999997777  3447899999999999999999999999998754

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.86  E-value=1.2e-21  Score=228.53  Aligned_cols=164  Identities=16%  Similarity=0.184  Sum_probs=129.0

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  +.+  ++||++++| +.++|+||||||||||+|++ |+..+-                   .+.
T Consensus       476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  554 (710)
T TIGR03796       476 GYVELRNITFGYSPLEPPLIENFSLTLQPG-QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS  554 (710)
T ss_pred             CeEEEEEEEEecCCCCCCcccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence            46899999999974  344  999999999 99999999999999999999 665431                   223


Q ss_pred             ceeecCCCCCCc--cH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPRL--PW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      .+|+||+.. .+  ++               +.+++...|+.+.+           ...-..|||||+ |+++|++++.+
T Consensus       555 i~~v~Q~~~-lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~  633 (710)
T TIGR03796       555 VAMVDQDIF-LFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN  633 (710)
T ss_pred             eeEEecCCh-hhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence            357888752 11  11               11233333443332           334577999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||++||+.....+.+.+.+    .++|+|++||..+....||+++.+++|++...
T Consensus       634 p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~  692 (710)
T TIGR03796       634 PSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR  692 (710)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence            999999999999999999998886543    47899999999998788999999999998754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=1.9e-21  Score=179.55  Aligned_cols=166  Identities=16%  Similarity=0.211  Sum_probs=136.0

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--------------------------h
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--------------------------S  378 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--------------------------a  378 (623)
                      |.++++++.||...+  +++++.+.| +.++++||+|+|||||+|++.|+..-                          .
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             eEEcccccccccchheeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            678999999998766  899999999 99999999999999999999766421                          1


Q ss_pred             hhceeecCCCC--CCccHHH----------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          379 KAGLYLPAKNH--PRLPWFD----------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      +....|++...  +.+.+.+                      .++.++.+.+..++.+-.||||++ |++++++++++|.
T Consensus        82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq  161 (242)
T COG4161          82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence            11123333321  1122222                      356778888899999999999998 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~~g~~~~~  494 (623)
                      ++|+||||+.|||+-...+.. |++.|.+.|.|-+++||..+++ ..+.+++.+++|+++..
T Consensus       162 vllfdeptaaldpeitaqvv~-iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~  222 (242)
T COG4161         162 VLLFDEPTAALDPEITAQIVS-IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ  222 (242)
T ss_pred             EEeecCcccccCHHHHHHHHH-HHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence            999999999999999999998 8888999999999999999865 68899999999998754

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.86  E-value=1.9e-21  Score=221.17  Aligned_cols=166  Identities=13%  Similarity=0.138  Sum_probs=129.5

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  .++  ++||++++| +.++|+||||+|||||+|++ |+..+-                   .+.
T Consensus       329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G-~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~  407 (571)
T TIGR02203       329 GDVEFRNVTFRYPGRDRPALDSISLVIEPG-ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ  407 (571)
T ss_pred             CeEEEEEEEEEcCCCCCccccCeeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence            45899999999964  344  999999999 99999999999999999999 776431                   123


Q ss_pred             ceeecCCCCC---------------Ccc--HHHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHP---------------RLP--WFDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~---------------~l~--~~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      -+|+||++..               ..+  -+.+++...|+.+.+.           ..-..||||++ |+++|++++.+
T Consensus       408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~  487 (571)
T TIGR02203       408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD  487 (571)
T ss_pred             ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            4588887520               010  1223444555544332           23357999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      |+++||||||+++|+.....+...+.+ +. .++|+|++||+..+...||++..+++|++..
T Consensus       488 ~~illLDEpts~LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~  547 (571)
T TIGR02203       488 APILILDEATSALDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVE  547 (571)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence            999999999999999999999886554 33 3689999999999889999999999998764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.86  E-value=2.1e-21  Score=225.71  Aligned_cols=166  Identities=18%  Similarity=0.180  Sum_probs=129.2

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  .++  ++||++++| +.++|+||||||||||+|++ |+..+-                   .+.
T Consensus       462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G-~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~  540 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQETPALDNVSLTIRPG-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN  540 (694)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence            46999999999964  334  999999999 99999999999999999999 665431                   123


Q ss_pred             ceeecCCCCCCc--cH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPRL--PW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..||||+.. .+  ++               +.+.+...|+.+.+           ...-..||||++ |+++|++++.+
T Consensus       541 i~~v~Q~~~-lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~  619 (694)
T TIGR03375       541 IGYVPQDPR-LFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD  619 (694)
T ss_pred             cEEECCChh-hhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            357777641 11  11               12233444444433           234468999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+++|+.....+.+++.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus       620 p~iliLDE~Ts~LD~~te~~i~~~l~~-~~~-~~T~iiItHrl~~~~~~D~iivl~~G~i~e~  680 (694)
T TIGR03375       620 PPILLLDEPTSAMDNRSEERFKDRLKR-WLA-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD  680 (694)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence            999999999999999999999996554 433 6899999999998889999999999988643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.86  E-value=2.3e-21  Score=221.01  Aligned_cols=167  Identities=13%  Similarity=0.113  Sum_probs=127.6

Q ss_pred             CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +.++++||+++|++ ..+  ++||++++| +.++|+||||||||||++++ |+..+.                   .+.-
T Consensus       333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  411 (585)
T TIGR01192       333 GAVEFRHITFEFANSSQGVFDVSFEAKAG-QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI  411 (585)
T ss_pred             CeEEEEEEEEECCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            46899999999975 334  999999999 99999999999999999999 665431                   1223


Q ss_pred             eeecCCCCC-CccHHHHH---------------HHHcCC-----------chhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHP-RLPWFDLI---------------LADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~-~l~~~d~i---------------~~~ig~-----------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .|+|++... .-++.+++               +...+.           ...+......|||||+ |+++|++++.+|+
T Consensus       412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~  491 (585)
T TIGR01192       412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP  491 (585)
T ss_pred             EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            477776420 01111211               222222           2234455678999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|+|+.....+...+. .+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus       492 ililDEpts~LD~~~~~~i~~~l~-~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~  550 (585)
T TIGR01192       492 ILVLDEATSALDVETEARVKNAID-ALR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK  550 (585)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHH-HHh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence            999999999999999999988554 444 37899999999987678999999999988643

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.86  E-value=1.9e-21  Score=192.22  Aligned_cols=144  Identities=20%  Similarity=0.228  Sum_probs=121.5

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC------------------CccH---------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP------------------RLPW---------  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~------------------~l~~---------  394 (623)
                      ++||++.+| +.++|+|+||||||||||+|        +|.+.|..|..                  .++.         
T Consensus        45 disf~i~~G-e~vGiiG~NGaGKSTLlkli--------aGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~  115 (249)
T COG1134          45 DISFEIYKG-ERVGIIGHNGAGKSTLLKLI--------AGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL  115 (249)
T ss_pred             CceEEEeCC-CEEEEECCCCCcHHHHHHHH--------hCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHH
Confidence            999999999 99999999999999999999        77777776621                  1121         


Q ss_pred             ------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974          395 ------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR  461 (623)
Q Consensus       395 ------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~  461 (623)
                                  ++.|.+--.+++.++.++.++|.||+ |++++.+...+|+++||||..+--|+.=...-.. .++.+.
T Consensus       116 ~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~-rl~e~~  194 (249)
T COG1134         116 ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE-RLNELV  194 (249)
T ss_pred             HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH-HHHHHH
Confidence                        23344444567899999999999999 9999999999999999999999999988887666 455565


Q ss_pred             cCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974          462 DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       462 ~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~  495 (623)
                      +++.|+|++||+++ +..+|++...+++|.+.+..
T Consensus       195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G  229 (249)
T COG1134         195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEG  229 (249)
T ss_pred             HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcC
Confidence            66799999999988 88999999999999998763

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.86  E-value=2.3e-21  Score=221.45  Aligned_cols=164  Identities=14%  Similarity=0.144  Sum_probs=126.2

Q ss_pred             CcEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          325 SEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +.++++||++.| +++++  ++||++++| +.++|+||||||||||++++ |+. +-                   .+..
T Consensus       348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i  425 (588)
T PRK11174        348 VTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL  425 (588)
T ss_pred             ceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhhe
Confidence            358999999755 45555  999999999 99999999999999999999 665 31                   1233


Q ss_pred             eeecCCCCCCc--cHH---------------HHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          382 LYLPAKNHPRL--PWF---------------DLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       382 ~~vp~~~~~~l--~~~---------------d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      .||||+.. -+  ++.               .+.+...|+.+           .+...-..||||++ |+++|++++.+|
T Consensus       426 ~~v~Q~~~-LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~  504 (588)
T PRK11174        426 SWVGQNPQ-LPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC  504 (588)
T ss_pred             EEecCCCc-CCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            57777752 11  111               12223333322           33344567999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      +++||||||+++|+.....+..++.+ +. ++.|+|++||.++....||+++.+++|++..
T Consensus       505 ~IliLDE~TSaLD~~te~~i~~~l~~-~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e  563 (588)
T PRK11174        505 QLLLLDEPTASLDAHSEQLVMQALNA-AS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ  563 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence            99999999999999999999986554 43 3689999999999878899999999998764

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.86  E-value=3.6e-21  Score=221.58  Aligned_cols=167  Identities=20%  Similarity=0.273  Sum_probs=135.9

Q ss_pred             cEEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          326 EMTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      .++++|+++.|++    ..+  ++||++.+| ++++|+||||+|||||+|++ |+..+-                     
T Consensus         4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence            5789999999953    233  999999999 99999999999999999999 665321                     


Q ss_pred             --hhhceeecCCCCC--CccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          378 --SKAGLYLPAKNHP--RLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       378 --a~~G~~vp~~~~~--~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                        .+...|+|+....  .++..                     ..++..+|+.+..++.+.+||+||+ |+.++++++.+
T Consensus        83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~  162 (648)
T PRK10535         83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG  162 (648)
T ss_pred             HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence              1223577776421  11212                     2245567777788899999999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++|||||++|||+.....+.. +++.+++.+.++|++||+.++...||+.+.+.+|++...
T Consensus       163 P~lLllDEP~~gLD~~s~~~l~~-ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~  224 (648)
T PRK10535        163 GQVILADEPTGALDSHSGEEVMA-ILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRN  224 (648)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEee
Confidence            99999999999999999999999 556676678899999999997778999999999998755

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2e-21  Score=184.28  Aligned_cols=137  Identities=22%  Similarity=0.273  Sum_probs=110.0

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC--------------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH--------------  389 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~--------------  389 (623)
                      ++.+|++...+..++  +++|++.+| +++.|+||||+|||||||++ ||..         |..|.              
T Consensus         3 L~a~~L~~~R~e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRilaGLl~---------p~~G~v~~~~~~i~~~~~~   72 (209)
T COG4133           3 LEAENLSCERGERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRILAGLLR---------PDAGEVYWQGEPIQNVRES   72 (209)
T ss_pred             chhhhhhhccCcceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHHHcccC---------CCCCeEEecCCCCccchhh
Confidence            345677777776666  999999999 99999999999999999999 5544         33321              


Q ss_pred             ---------------CCccHH------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          390 ---------------PRLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       390 ---------------~~l~~~------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                                     ..++.+                  .+.++.+|+.+..+.++..||.|++ |+++++-.+..++|.
T Consensus        73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW  152 (209)
T COG4133          73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW  152 (209)
T ss_pred             HHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence                           112222                  2346778888888999999999999 789998899999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      |||||++++|......+.. ++..-..+|+.||++||..
T Consensus       153 iLDEP~taLDk~g~a~l~~-l~~~H~~~GGiVllttHq~  190 (209)
T COG4133         153 ILDEPFTALDKEGVALLTA-LMAAHAAQGGIVLLTTHQP  190 (209)
T ss_pred             eecCcccccCHHHHHHHHH-HHHHHhcCCCEEEEecCCc
Confidence            9999999999988888877 5555566788999999984

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.86  E-value=3.5e-21  Score=220.05  Aligned_cols=166  Identities=16%  Similarity=0.152  Sum_probs=130.1

Q ss_pred             CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +.++++||+++|++ ..+  ++||++++| +.++|+||||||||||+|++ |+..+-                   .+.-
T Consensus       339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~G-e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i  417 (592)
T PRK10790        339 GRIDIDNVSFAYRDDNLVLQNINLSVPSR-GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV  417 (592)
T ss_pred             CeEEEEEEEEEeCCCCceeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            45899999999964 344  999999999 99999999999999999999 665431                   2234


Q ss_pred             eeecCCCCCCcc--H--------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHPRLP--W--------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      +|+||+.. .++  +              +.+++...|+.+.++           ..-..||||++ |+++|++++.+|+
T Consensus       418 ~~v~Q~~~-lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~  496 (592)
T PRK10790        418 AMVQQDPV-VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ  496 (592)
T ss_pred             EEEccCCc-cccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            57787752 111  1              223344555544333           33457999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+++|+.....+.+.+.+ +.+ ++|+|++||+.+....||+++.+++|++...
T Consensus       497 illlDEpts~LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~  555 (592)
T PRK10790        497 ILILDEATANIDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQ  555 (592)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999886554 443 5899999999998778999999999998754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.86  E-value=4.6e-21  Score=217.98  Aligned_cols=166  Identities=11%  Similarity=0.122  Sum_probs=127.3

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++|++++|++  ..+  ++||++++| +.++|+||||||||||++++ |+..+-                   .+.
T Consensus       312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  390 (569)
T PRK10789        312 GELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR  390 (569)
T ss_pred             CcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence            35889999999964  334  999999999 99999999999999999999 665431                   122


Q ss_pred             ceeecCCCCCCc--cHH---------------HHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPRL--PWF---------------DLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~l--~~~---------------d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..|+|++.. .+  ++.               ...+...+..+.+           ......||||++ |+++|++++.+
T Consensus       391 i~~v~q~~~-lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~  469 (569)
T PRK10789        391 LAVVSQTPF-LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN  469 (569)
T ss_pred             eEEEccCCe-eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            346777641 11  111               2223333433322           234567999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|+|+.....+...+.+ +. .+.|+|++||+.+....+|++..+.+|++...
T Consensus       470 ~~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~  530 (569)
T PRK10789        470 AEILILDDALSAVDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVMQHGHIAQR  530 (569)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence            999999999999999999999986544 43 47899999999987778999999999988654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.85  E-value=5.1e-21  Score=223.01  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=129.5

Q ss_pred             CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc
Q 006974          325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G  381 (623)
                      +.++++||+++|++ +.+  ++||++++| +.++|+||||||||||+|++ |+..+                   +.+.-
T Consensus       472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G-~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  550 (708)
T TIGR01193       472 GDIVINDVSYSYGYGSNILSDISLTIKMN-SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI  550 (708)
T ss_pred             CcEEEEEEEEEcCCCCcceeceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence            46899999999973 444  999999999 99999999999999999999 66543                   11233


Q ss_pred             eeecCCCCC---------C------cc--HHHHHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCC
Q 006974          382 LYLPAKNHP---------R------LP--WFDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       382 ~~vp~~~~~---------~------l~--~~d~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      .|+||+...         .      .+  -+.+.+...|..+.           +......||||++ |+++|++++.+|
T Consensus       551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p  630 (708)
T TIGR01193       551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS  630 (708)
T ss_pred             EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence            578887420         0      00  11223333344332           2344578999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+++|+.....+...+.+ +  +++|+|++||+.+....||++..+++|++...
T Consensus       631 ~iliLDE~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~  689 (708)
T TIGR01193       631 KVLILDESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ  689 (708)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence            99999999999999999999886654 3  36899999999998888999999999998654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.85  E-value=8.9e-21  Score=190.97  Aligned_cols=150  Identities=25%  Similarity=0.316  Sum_probs=109.4

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHH-HHH---hhhhhh--------hhh-ceeec--------------CCC----CC
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASM-KTL---GLASLM--------SKA-GLYLP--------------AKN----HP  390 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlL-k~i---gl~~~~--------a~~-G~~vp--------------~~~----~~  390 (623)
                      ++||++.+| ++++|+||||||||||+ .++   |-+.+.        ... +.+.|              +..    ..
T Consensus        13 ~vsl~i~~G-e~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (226)
T cd03270          13 NVDVDIPRN-KLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP   91 (226)
T ss_pred             cceeecCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence            999999999 99999999999999996 333   111100        000 01111              111    01


Q ss_pred             Ccc---------HH------------HHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCC
Q 006974          391 RLP---------WF------------DLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTD  445 (623)
Q Consensus       391 ~l~---------~~------------d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD  445 (623)
                      ...         ++            ...+..+|+.+ ..++.+++||+||+ |++++++++.+|  +++||||||+|+|
T Consensus        92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD  171 (226)
T cd03270          92 RSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH  171 (226)
T ss_pred             CccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCC
Confidence            101         01            12344556655 47889999999999 799999999987  5999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee------eCceEEE
Q 006974          446 PSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF------ENAATEF  493 (623)
Q Consensus       446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i------~~g~~~~  493 (623)
                      +.....+... +..+.+.|.|+|++||+++...+||++..+      .+|+++.
T Consensus       172 ~~~~~~l~~~-l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~  224 (226)
T cd03270         172 PRDNDRLIET-LKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVA  224 (226)
T ss_pred             HHHHHHHHHH-HHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEe
Confidence            9999999994 555666788999999999877799999999      7777654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.85  E-value=5.6e-21  Score=222.48  Aligned_cols=164  Identities=16%  Similarity=0.146  Sum_probs=126.5

Q ss_pred             CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974          325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK  379 (623)
Q Consensus       325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~  379 (623)
                      +.++++||+++|++   .++  ++||++++| +.++|+||||||||||+|++ |+..+.                   .+
T Consensus       477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~  555 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPG-EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR  555 (711)
T ss_pred             CeEEEEEEEEECCCCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence            46999999999964   345  999999999 99999999999999999999 665431                   22


Q ss_pred             hceeecCCCCCCc--cH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcC
Q 006974          380 AGLYLPAKNHPRL--PW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       380 ~G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      ...|+||+.. .+  ++               +.+++...|..+.+           ...-..|||||+ |+++|++++.
T Consensus       556 ~i~~v~Q~~~-lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~  634 (711)
T TIGR00958       556 QVALVGQEPV-LFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR  634 (711)
T ss_pred             hceEEecCcc-ccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence            3457888752 11  11               22333444443332           233467999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||+++|+.....+.+ .   ....+.|+|++||..+....+|+++.+++|++...
T Consensus       635 ~p~ILILDEpTSaLD~~te~~i~~-~---~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~  694 (711)
T TIGR00958       635 KPRVLILDEATSALDAECEQLLQE-S---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM  694 (711)
T ss_pred             CCCEEEEEccccccCHHHHHHHHH-h---hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999988777766 1   22347899999999998888999999999998654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.85  E-value=5.6e-21  Score=217.66  Aligned_cols=166  Identities=15%  Similarity=0.189  Sum_probs=128.3

Q ss_pred             CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974          325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK  379 (623)
Q Consensus       325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~  379 (623)
                      +.++++||+++|++   +.+  +++|++++| +.++|+||||||||||+|++ |+..+-                   .+
T Consensus       336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~G-e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~  414 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA  414 (576)
T ss_pred             ceEEEEEEEEECCCCCCCccccceeEEecCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence            35899999999963   334  999999999 99999999999999999999 666431                   12


Q ss_pred             hceeecCCCCCCc--cH---------------HHHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcC
Q 006974          380 AGLYLPAKNHPRL--PW---------------FDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       380 ~G~~vp~~~~~~l--~~---------------~d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      .-.|+||+.. .+  ++               +...+...|..+           .+......||||++ |++++++++.
T Consensus       415 ~i~~~~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~  493 (576)
T TIGR02204       415 RMALVPQDPV-LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK  493 (576)
T ss_pred             hceEEccCCc-cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            2357888752 11  11               122233333332           23345578999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||+++|+.....+.+.+.+ +. .+.|+|++||+.+....+|++..+.+|++...
T Consensus       494 ~~~ililDEpts~lD~~~~~~i~~~l~~-~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~  555 (576)
T TIGR02204       494 DAPILLLDEATSALDAESEQLVQQALET-LM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ  555 (576)
T ss_pred             CCCeEEEeCcccccCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHhCCEEEEEECCEEEee
Confidence            9999999999999999999988885544 43 36899999999998888999999999987654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=5.9e-21  Score=192.13  Aligned_cols=159  Identities=18%  Similarity=0.123  Sum_probs=130.5

Q ss_pred             cEEEceeeeecCCc----------cc-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCc--
Q 006974          326 EMTVGSLSKGISDF----------PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL--  392 (623)
Q Consensus       326 ~l~~~~l~~~y~~~----------~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l--  392 (623)
                      .++++||++.|...          .+ +|||++.+| ++++|+|.+||||||+-|++        .|+.-|..|...+  
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i--------~~L~~pt~G~i~f~g   74 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLI--------LGLEEPTSGEILFEG   74 (268)
T ss_pred             eEEEeccEEEEecccccCcccceEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHH--------HcCcCCCCceEEEcC
Confidence            46788888888421          22 899999999 99999999999999999999        5555555542211  


Q ss_pred             ------------cHHHHHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974          393 ------------PWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       393 ------------~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~  458 (623)
                                  ..+..++..+|+.. .+++.++.||||++ |+.+|++++.+|+++++|||++.||...++.+.. ++.
T Consensus        75 ~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIln-LL~  153 (268)
T COG4608          75 KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN-LLK  153 (268)
T ss_pred             cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHH-HHH
Confidence                        12445678888764 78999999999999 8999999999999999999999999999999999 555


Q ss_pred             HHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          459 YLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       459 ~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+.+ .|.+.+|+|||+. ...++|++.++..|+++..
T Consensus       154 dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~  191 (268)
T COG4608         154 DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI  191 (268)
T ss_pred             HHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe
Confidence            5654 5889999999998 4568999999999987643

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.85  E-value=7.2e-21  Score=221.30  Aligned_cols=166  Identities=17%  Similarity=0.162  Sum_probs=129.1

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  +.+  ++||++++| +.++|+||||||||||+|++ |+..+-                   .+.
T Consensus       454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G-~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~  532 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPEVLSNLNLDIKPG-EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ  532 (694)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence            46899999999953  334  999999999 99999999999999999999 665431                   123


Q ss_pred             ceeecCCCCCCcc--H---------------HHHHHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPRLP--W---------------FDLILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~l~--~---------------~d~i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..|+|++.. .++  +               +.+.+...|..+.           +......||||++ |++++++++.+
T Consensus       533 i~~v~q~~~-lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~  611 (694)
T TIGR01846       533 MGVVLQENV-LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN  611 (694)
T ss_pred             CeEEccCCe-ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence            457777641 111  1               1222333343332           3345678999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+++|+.....+.+.+.+ +. .+.|+|++||+.+....||++..+.+|++...
T Consensus       612 ~~ililDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~  672 (694)
T TIGR01846       612 PRILIFDEATSALDYESEALIMRNMRE-IC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAES  672 (694)
T ss_pred             CCEEEEECCCcCCCHHHHHHHHHHHHH-Hh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence            999999999999999999999996655 33 47899999999987777999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.85  E-value=8.2e-21  Score=218.92  Aligned_cols=158  Identities=15%  Similarity=0.160  Sum_probs=123.0

Q ss_pred             CcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------hhceeecCCCCCC-
Q 006974          325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------KAGLYLPAKNHPR-  391 (623)
Q Consensus       325 ~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------~~G~~vp~~~~~~-  391 (623)
                      +.++++||++.|+ +..+  ++||++.+| ++++|+||||||||||+|++ |+..+-.        ....|+|++.... 
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~  528 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL  528 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence            4699999999995 4344  999999999 99999999999999999999 6654321        1234778774100 


Q ss_pred             ccH----------------------HHHHHHHcCCchhhhcc---------cccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          392 LPW----------------------FDLILADIGDHQSLEQN---------LSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       392 l~~----------------------~d~i~~~ig~~~~~~~~---------~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      -++                      +.+++..+|+.+.++++         ..+|||||+ |+++|++++.+|+++||||
T Consensus       529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE  608 (659)
T TIGR00954       529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE  608 (659)
T ss_pred             cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            011                      22345556666555543         279999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      ||+|+|+.....+.+.+.+    .+.|+|++||+.++...||++..+.
T Consensus       609 pts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~l~  652 (659)
T TIGR00954       609 CTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLYMD  652 (659)
T ss_pred             CccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEEEe
Confidence            9999999998888774433    4889999999999888899887774

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=9.8e-21  Score=206.62  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=129.2

Q ss_pred             cEEEceeeeecCCc-cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhce
Q 006974          326 EMTVGSLSKGISDF-PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~-~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~  382 (623)
                      .++.+|+++.|++. ++  ++||++++| +.++|+||||||||||++.+ |+..+                   ..+..+
T Consensus       320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g-~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~  398 (559)
T COG4988         320 EISLENLSFRYPDGKPALSDLNLTIKAG-QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS  398 (559)
T ss_pred             eeeecceEEecCCCCcccCCceeEecCC-cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence            45566999999764 43  999999999 99999999999999999999 66652                   113345


Q ss_pred             eecCCCCCCcc--H---------------HHHHHHHcCCch----------hhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          383 YLPAKNHPRLP--W---------------FDLILADIGDHQ----------SLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       383 ~vp~~~~~~l~--~---------------~d~i~~~ig~~~----------~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      +||+++. -++  .               +.+++...|+.+          .+..+-+.+|||++ |+++++++..++++
T Consensus       399 ~v~Q~p~-lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l  477 (559)
T COG4988         399 WVSQNPY-LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL  477 (559)
T ss_pred             eeCCCCc-cccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence            7777752 111  1               223344444333          34445667999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+||||+|+|.++...+.+++.+ +.+ +.|+|++||......-+|+++++++|++...
T Consensus       478 ~llDEpTA~LD~etE~~i~~~l~~-l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~  535 (559)
T COG4988         478 LLLDEPTAHLDAETEQIILQALQE-LAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQ  535 (559)
T ss_pred             EEecCCccCCCHhHHHHHHHHHHH-HHh-CCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence            999999999999999999996555 454 3799999999998899999999999998754

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.84  E-value=3e-21  Score=183.66  Aligned_cols=165  Identities=22%  Similarity=0.264  Sum_probs=130.0

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--------------------hhhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--------------------~a~~G~  382 (623)
                      .++++||+.+||+-..  ++||++.+| +.-+|+||||+||||+|-.| |...+                    .|+.|.
T Consensus         5 iL~~~~vsVsF~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI   83 (249)
T COG4674           5 ILYLDGVSVSFGGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI   83 (249)
T ss_pred             eEEEeceEEEEcceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence            5788999999998544  999999999 99999999999999999999 44332                    122221


Q ss_pred             -eecCCC--CCCccH-----------------------------HHHHHHHcCCchhhhcccccccHHHHH-HHHHHHhc
Q 006974          383 -YLPAKN--HPRLPW-----------------------------FDLILADIGDHQSLEQNLSTFSGHISR-IVDILELV  429 (623)
Q Consensus       383 -~vp~~~--~~~l~~-----------------------------~d~i~~~ig~~~~~~~~~stfS~g~~r-l~~~~~l~  429 (623)
                       -.+|.+  +..+++                             +|.+++.+|+.+..+...++||-|+|| +-+.+-++
T Consensus        84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~  163 (249)
T COG4674          84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA  163 (249)
T ss_pred             CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence             011111  011111                             456688889999999999999999995 55556689


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      ++|.|+|+|||.+|+.-.+....++ ++..++. .++++++.||++ +..+++++.++..|++..
T Consensus       164 Q~P~lLLlDEPvAGMTd~Et~~tae-Ll~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~  226 (249)
T COG4674         164 QDPKLLLLDEPVAGMTDAETEKTAE-LLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLA  226 (249)
T ss_pred             cCCcEEEecCccCCCcHHHHHHHHH-HHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceee
Confidence            9999999999999999999999999 6766776 478999999999 567999999998888754

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=4.5e-21  Score=191.35  Aligned_cols=162  Identities=23%  Similarity=0.323  Sum_probs=132.9

Q ss_pred             eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------hhhc----------eeecC
Q 006974          331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------SKAG----------LYLPA  386 (623)
Q Consensus       331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------a~~G----------~~vp~  386 (623)
                      |+.+.+|+..+.++|.++.. .+++|.|++||||||++|+| |++.+.             +..|          .||+|
T Consensus         5 ~~~~~lG~~~l~a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ   83 (352)
T COG4148           5 NFRQRLGNFALDANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ   83 (352)
T ss_pred             ehhhhcCceEEEEeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence            34455666666889998874 59999999999999999999 777541             1222          25555


Q ss_pred             CCC--C---------------CccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          387 KNH--P---------------RLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       387 ~~~--~---------------~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                      +..  +               ....||++...+|++..+++.+++||||++ |+++.+++.+.|.|+|||||.+.||..-
T Consensus        84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R  163 (352)
T COG4148          84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR  163 (352)
T ss_pred             ccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence            420  1               112388999999999999999999999999 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          449 GVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       449 ~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ...+.- .++.|.+. +.-++.+||.++ +..+||+++.++||++...
T Consensus       164 K~Eilp-ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~  210 (352)
T COG4148         164 KREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS  210 (352)
T ss_pred             hhHHHH-HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence            999998 78888765 667999999976 8899999999999998754

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.84  E-value=9.6e-21  Score=213.64  Aligned_cols=158  Identities=18%  Similarity=0.235  Sum_probs=120.5

Q ss_pred             CcEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++.  ++  ++|+++++| +.++|+||||||||||+|++ |+..+-                   .+.
T Consensus       319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G-~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~  397 (529)
T TIGR02857       319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPG-ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ  397 (529)
T ss_pred             CeEEEEEEEEECCCCCcccccceeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence            358999999999752  34  999999999 99999999999999999999 665431                   123


Q ss_pred             ceeecCCCCC-CccH---------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCC
Q 006974          381 GLYLPAKNHP-RLPW---------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       381 G~~vp~~~~~-~l~~---------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      -.|+||+... .-+.               +...+...|..+.+           .....+||||++ |++++++++.+|
T Consensus       398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~  477 (529)
T TIGR02857       398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA  477 (529)
T ss_pred             eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence            3577777520 0011               22333444444333           334578999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR  485 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~  485 (623)
                      +++||||||+++|+.....+.+.+.+ +. .++|+|++||+.+....||+++.
T Consensus       478 ~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~~~~~~~~d~i~~  528 (529)
T TIGR02857       478 PLLLLDEPTAHLDAETEALVTEALRA-LA-QGRTVLLVTHRLALAERADRIVV  528 (529)
T ss_pred             CEEEEeCcccccCHHHHHHHHHHHHH-hc-CCCEEEEEecCHHHHHhCCEEEe
Confidence            99999999999999999999986654 33 47899999999987777887653

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=3.2e-21  Score=205.84  Aligned_cols=167  Identities=18%  Similarity=0.205  Sum_probs=126.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhh--hhhh----hhhceeecCCCC--------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGL--ASLM----SKAGLYLPAKNH--------  389 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl--~~~~----a~~G~~vp~~~~--------  389 (623)
                      .|.+.+++..||++.+  .-++++..| +.++|+||||+|||||||+|+-  +..+    --.|.++|+.-.        
T Consensus        80 Di~~~~fdLa~G~k~LL~~a~L~L~~G-rRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~  158 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKILLNKANLTLSRG-RRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTER  158 (582)
T ss_pred             ceeeeeeeeeecchhhhcCCceeeecc-cccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHH
Confidence            4677889999998776  788899999 9999999999999999999933  2111    012333333210        


Q ss_pred             -----------CC---ccHHHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974          390 -----------PR---LPWFDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA  453 (623)
Q Consensus       390 -----------~~---l~~~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~  453 (623)
                                 +.   -..+++++..+|.. +...++..+||||-+ |+++|+++..+|+|||||||||+||...   ++
T Consensus       159 ~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a---v~  235 (582)
T KOG0062|consen  159 LDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA---VA  235 (582)
T ss_pred             HHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH---HH
Confidence                       00   00123356677765 456789999999999 9999999999999999999999999965   44


Q ss_pred             HHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEecCc
Q 006974          454 TSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSLET  497 (623)
Q Consensus       454 ~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~~  497 (623)
                      | +-+||...+.|+|+||||.. |..+|..++.+++-++.++.++
T Consensus       236 W-Le~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN  279 (582)
T KOG0062|consen  236 W-LENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGN  279 (582)
T ss_pred             H-HHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCc
Confidence            5 55678887899999999988 6789998888877666555443

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.84  E-value=1.1e-20  Score=200.31  Aligned_cols=139  Identities=17%  Similarity=0.109  Sum_probs=109.7

Q ss_pred             EEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCCCC--CCccHH--------------------
Q 006974          356 ITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKNH--PRLPWF--------------------  395 (623)
Q Consensus       356 I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~~~--~~l~~~--------------------  395 (623)
                      |+||||||||||||+| |+..+.                 .+...|+|+...  ..+++.                    
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~   80 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR   80 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence            6899999999999999 776431                 112346777641  112222                    


Q ss_pred             -HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          396 -DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       396 -d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                       +.++..+|+.+..++.+++|||||+ |++++++++.+|+++||||||+|||+.....+...+.+...+.+.|+|++||+
T Consensus        81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd  160 (325)
T TIGR01187        81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD  160 (325)
T ss_pred             HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence             2345667777778899999999999 89999999999999999999999999999999995554434458899999999


Q ss_pred             hh-HHhhccccceeeCceEEEe
Q 006974          474 AD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       474 ~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+ +..+||++..+.+|++...
T Consensus       161 ~~e~~~~~d~i~vl~~G~i~~~  182 (325)
T TIGR01187       161 QEEAMTMSDRIAIMRKGKIAQI  182 (325)
T ss_pred             HHHHHHhCCEEEEEECCEEEEE
Confidence            87 5679999999999998654

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.83  E-value=2.1e-19  Score=193.03  Aligned_cols=157  Identities=22%  Similarity=0.313  Sum_probs=121.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccH----------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW----------  394 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~----------  394 (623)
                      +.+.|++++|.+..+  +..|++.+| +.++|+|||||||||+|++|        .|..+|......+-.          
T Consensus        76 vk~~sls~s~~g~~l~kd~~~El~~g-~rygLiG~nG~Gkst~L~~i--------~~~e~P~p~~~d~y~ls~e~~ps~~  146 (614)
T KOG0927|consen   76 VKIESLSLSFHGVELIKDVTLELNRG-RRYGLIGPNGSGKSTFLRAI--------AGREVPIPEHIDFYLLSREIEPSEK  146 (614)
T ss_pred             ceeeeeeeccCCceeeeeeeEEecCC-ceEEEEcCCCCcHhHHHHHH--------hcCCCCCCcccchhhhcccCCCchH
Confidence            567889999977665  999999999 99999999999999999999        555555432110000          


Q ss_pred             -----------------------------------HH-------------------HHHHHcC-CchhhhcccccccHHH
Q 006974          395 -----------------------------------FD-------------------LILADIG-DHQSLEQNLSTFSGHI  419 (623)
Q Consensus       395 -----------------------------------~d-------------------~i~~~ig-~~~~~~~~~stfS~g~  419 (623)
                                                         ++                   +++..+| ......+.+..||||.
T Consensus       147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw  226 (614)
T KOG0927|consen  147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW  226 (614)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence                                               00                   1222233 2345678899999999


Q ss_pred             H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEcCchh-HHhhccccceeeCceEEEecC
Q 006974          420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD-LSCLKDKDTRFENAATEFSLE  496 (623)
Q Consensus       420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~-~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~~  496 (623)
                      + |+++++++..+|+||||||||+|||+.....|..    +|.+... ++++++|+.+ +..+|++++.+.++...++.+
T Consensus       227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee----~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G  302 (614)
T KOG0927|consen  227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE----YLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG  302 (614)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH----HHHhccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence            9 9999999999999999999999999977665555    5655555 8999999998 778999999999988666644

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=6.8e-20  Score=177.02  Aligned_cols=153  Identities=14%  Similarity=0.203  Sum_probs=117.8

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------------------hhceeecCCC----CCCccHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------------------KAGLYLPAKN----HPRLPWFDL  397 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------------------~~G~~vp~~~----~~~l~~~d~  397 (623)
                      .+++++..| +++.|+|.||+|||||++++ |-+.+-+                   ..-.-|+|++    +..+++.++
T Consensus        24 ~~sL~I~~g-~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieEN  102 (263)
T COG1101          24 GLSLEIAEG-DFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEEN  102 (263)
T ss_pred             cCceeecCC-ceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHH
Confidence            899999999 99999999999999999999 3332210                   0001111211    112222222


Q ss_pred             ---------------------------HHHH--cCCchhhhcccccccHHHHH-HHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          398 ---------------------------ILAD--IGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       398 ---------------------------i~~~--ig~~~~~~~~~stfS~g~~r-l~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                                                 -++.  .|++..+..++.-||||++| ++++++-+.+|++++|||-|+.|||.
T Consensus       103 l~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPk  182 (263)
T COG1101         103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPK  182 (263)
T ss_pred             HHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcc
Confidence                                       2222  35677888999999999995 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~  495 (623)
                      ....+.+.-.+...+.+.|++++||+++ -..+.++.+.++.|+++.|.
T Consensus       183 ta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         183 TAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             hHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence            9999999666666677889999999988 55789999999999999874

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.82  E-value=5.1e-20  Score=207.79  Aligned_cols=146  Identities=22%  Similarity=0.257  Sum_probs=112.2

Q ss_pred             CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhce
Q 006974          325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGL  382 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~  382 (623)
                      +.++++||+++|++ +.+  ++||++++| +.++|+||+|||||||+|.+ |+..+-                  .+.-.
T Consensus       333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~  411 (529)
T TIGR02868       333 PTLELRDLSFGYPGSPPVLDGVSLDLPPG-ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS  411 (529)
T ss_pred             ceEEEEEEEEecCCCCceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence            45899999999975 344  999999999 99999999999999999999 665431                  12335


Q ss_pred             eecCCCCCCc--cH---------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCc
Q 006974          383 YLPAKNHPRL--PW---------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       383 ~vp~~~~~~l--~~---------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      ||||+.. -+  ++               +.+.+...+..+.+.           ..-..|||||+ |+++|++++.+|+
T Consensus       412 ~V~Q~~~-lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~  490 (529)
T TIGR02868       412 VFAQDAH-LFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP  490 (529)
T ss_pred             EEccCcc-cccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence            8888752 11  11               223344445544433           23467999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ++||||||+++|+.....+.+.+.+ + ..+.|+|++||..
T Consensus       491 iliLDE~TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHrl  529 (529)
T TIGR02868       491 ILLLDEPTEHLDAGTESELLEDLLA-A-LSGKTVVVITHHL  529 (529)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH-h-cCCCEEEEEecCC
Confidence            9999999999999999999886654 3 2368999999973

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.82  E-value=9.6e-20  Score=224.38  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=133.5

Q ss_pred             CCcEEEceeeeecC----Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---hh---------------h
Q 006974          324 NSEMTVGSLSKGIS----DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---LM---------------S  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~----~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---~~---------------a  378 (623)
                      ...++++||++.|+    ++.+  ++|+.+.+| ++++|+|||||||||||++| |+..   +.               .
T Consensus       757 ~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~  835 (1394)
T TIGR00956       757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ  835 (1394)
T ss_pred             CceEEEEeeEEEecCCCCCcEeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence            34578999999995    3344  999999999 99999999999999999999 6653   11               1


Q ss_pred             hhceeecCCCC--CCccH------------------------HHHHHHHcCCchhhhcccc----cccHHHH-HHHHHHH
Q 006974          379 KAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNLS----TFSGHIS-RIVDILE  427 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~s----tfS~g~~-rl~~~~~  427 (623)
                      +.-.|+||+..  ..+++                        +++++..+|+.+..++.++    .|||||+ |+.++++
T Consensus       836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a  915 (1394)
T TIGR00956       836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE  915 (1394)
T ss_pred             cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence            12357887631  11111                        2455667777776777776    7999999 8999999


Q ss_pred             hcCCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH--HhhccccceeeCc-eEEEe
Q 006974          428 LVSRES-LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDTRFENA-ATEFS  494 (623)
Q Consensus       428 l~~~~~-LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l--~~~~~~~~~i~~g-~~~~~  494 (623)
                      ++.+|+ ++||||||+|||+.....+.. +++.+++.|.|||++||++..  ...+|++..+.+| ++.+.
T Consensus       916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~  985 (1394)
T TIGR00956       916 LVAKPKLLLFLDEPTSGLDSQTAWSICK-LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYF  985 (1394)
T ss_pred             HHcCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEE
Confidence            999996 999999999999999999999 566677778999999999873  4679999999987 87765

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.81  E-value=1.3e-19  Score=206.20  Aligned_cols=165  Identities=17%  Similarity=0.190  Sum_probs=126.9

Q ss_pred             CcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--------------------hhhh
Q 006974          325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL--------------------MSKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--------------------~a~~  380 (623)
                      +.++++||+++|+ ++.+  ++||.+++| +.++|+||+||||||+++.+ ++..+                    ..+.
T Consensus       327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~G-e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I  405 (567)
T COG1132         327 GSIEFENVSFSYPGKKPVLKDISFSIEPG-EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI  405 (567)
T ss_pred             CeEEEEEEEEEcCCCCccccCceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence            4599999999998 4555  899999999 99999999999999999999 45432                    1233


Q ss_pred             ceeecCCCCCCcc--HHH---------------HHHHHcC-----------CchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPRLP--WFD---------------LILADIG-----------DHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~l~--~~d---------------~i~~~ig-----------~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      + +|||+.. .+.  +.+               +.+...+           .+..+...-..||||+| |+++|++++.+
T Consensus       406 ~-~V~Qd~~-LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~  483 (567)
T COG1132         406 G-IVSQDPL-LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN  483 (567)
T ss_pred             c-EEcccce-eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            3 7887651 111  111               1222222           22233345578999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+++|+.....+.+++.+ +. ++.|+|+++|.+.....||++.++++|++...
T Consensus       484 ~~ILILDEaTSalD~~tE~~I~~~l~~-l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~  544 (567)
T COG1132         484 PPILILDEATSALDTETEALIQDALKK-LL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVER  544 (567)
T ss_pred             CCEEEEeccccccCHHhHHHHHHHHHH-Hh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999997663 44 35699999999986666999999999996544

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.81  E-value=1.1e-19  Score=179.07  Aligned_cols=138  Identities=17%  Similarity=0.142  Sum_probs=103.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------h---------hhceeecCCCCCCcc--
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------S---------KAGLYLPAKNHPRLP--  393 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a---------~~G~~vp~~~~~~l~--  393 (623)
                      ++++++.+|  +++|+|||||||||||+++ |++...                .         ....++|+.....++  
T Consensus        15 ~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~   92 (197)
T cd03278          15 KTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII   92 (197)
T ss_pred             CeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence            567788877  8999999999999999999 554110                0         112366665433221  


Q ss_pred             ---HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 006974          394 ---WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG  465 (623)
Q Consensus       394 ---~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~  465 (623)
                         -+++++..   .+..++.+.+||+||+ +++++++++    .+|+++|||||++|+|+.....+.. ++..+.+ +.
T Consensus        93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~  167 (197)
T cd03278          93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-ET  167 (197)
T ss_pred             ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-CC
Confidence               13445544   4456788999999999 788888765    5779999999999999999999999 5555655 68


Q ss_pred             EEEEEcCchhHHhhcccccee
Q 006974          466 LAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       466 ~vii~TH~~~l~~~~~~~~~i  486 (623)
                      ++|++||++++..+||+++.+
T Consensus       168 tiIiitH~~~~~~~~d~v~~~  188 (197)
T cd03278         168 QFIVITHRKGTMEAADRLYGV  188 (197)
T ss_pred             EEEEEECCHHHHhhcceEEEE
Confidence            999999999877788877654

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.81  E-value=1e-19  Score=215.57  Aligned_cols=167  Identities=24%  Similarity=0.283  Sum_probs=139.1

Q ss_pred             CcEEEceeeeecCCcc--c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------------hh
Q 006974          325 SEMTVGSLSKGISDFP--V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------------KA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~--v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------------~~  380 (623)
                      ..+.++|+++.|+...  | ++++.+++| ++.+++|||||||||++|++ |...+-+                    +.
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~  641 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ  641 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence            4678899999998764  5 999999999 99999999999999999998 6664311                    12


Q ss_pred             ceeecCCCCCCc------------------c------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          381 GLYLPAKNHPRL------------------P------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       381 G~~vp~~~~~~l------------------~------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      -.|.||.. +..                  +      .++.++..+|+.+..++.++++|||+| |++.+++++.+|+++
T Consensus       642 iGyCPQ~d-~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi  720 (885)
T KOG0059|consen  642 LGYCPQFD-ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI  720 (885)
T ss_pred             cccCCchh-hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence            23677763 111                  1      134567778889999999999999999 799999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||++|+||..+..++. ++..+++.+..+|+|||+++. ..+|++..++.+|++.+-
T Consensus       721 ~LDEPstGmDP~arr~lW~-ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci  779 (885)
T KOG0059|consen  721 LLDEPSTGLDPKARRHLWD-IIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI  779 (885)
T ss_pred             EecCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence            9999999999999999988 667777766699999999985 469999999999998874

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.4e-19  Score=168.73  Aligned_cols=152  Identities=20%  Similarity=0.352  Sum_probs=120.6

Q ss_pred             cEEEceeeeec-----CCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-------
Q 006974          326 EMTVGSLSKGI-----SDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------  389 (623)
Q Consensus       326 ~l~~~~l~~~y-----~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-------  389 (623)
                      .+.++|++|+|     ++.  +|  +++|++..| +++++-||+|+||||+||++        .|-|.|.+|.       
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aG-ECvvL~G~SG~GKStllr~L--------YaNY~~d~G~I~v~H~g   74 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSL--------YANYLPDEGQILVRHEG   74 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHH--------HhccCCCCceEEEEeCc
Confidence            35677888877     221  23  899999999 99999999999999999999        6777776652       


Q ss_pred             ------------------CCccHHH----------------------------------HHHHHcCCchhh-hccccccc
Q 006974          390 ------------------PRLPWFD----------------------------------LILADIGDHQSL-EQNLSTFS  416 (623)
Q Consensus       390 ------------------~~l~~~d----------------------------------~i~~~ig~~~~~-~~~~stfS  416 (623)
                                        ..++|+.                                  .+++++++...+ .-.++|||
T Consensus        75 ~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFS  154 (235)
T COG4778          75 EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFS  154 (235)
T ss_pred             chhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccC
Confidence                              1122221                                  346666766544 45789999


Q ss_pred             HHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhccccceee
Q 006974          417 GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CLKDKDTRFE  487 (623)
Q Consensus       417 ~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~~~~~i~  487 (623)
                      ||++ |+.+++.++.+-.++||||||+.||...++.+.+ ++..-+.+|+.+|=+=||.++. .+||+...+.
T Consensus       155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve-li~e~Ka~GaAlvGIFHDeevre~vadR~~~~~  226 (235)
T COG4778         155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVREAVADRLLDVS  226 (235)
T ss_pred             CchheehhhhhhhhccCceEEecCCcccccccchHHHHH-HHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence            9999 7999999999999999999999999999999999 6666788899999999999865 5788776553

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.80  E-value=1.8e-19  Score=222.31  Aligned_cols=162  Identities=13%  Similarity=0.136  Sum_probs=124.4

Q ss_pred             cEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hh
Q 006974          326 EMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SK  379 (623)
Q Consensus       326 ~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~  379 (623)
                      .++++||++.|++.   .+  ++||++++| ++++|+||||||||||++++ |+..+.                    .+
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~G-e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~  460 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG-KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS  460 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCC-CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence            58999999999742   34  999999999 99999999999999999999 665321                    11


Q ss_pred             hceeecCCCCCCc--cHHHHH-----------------------------------------------------------
Q 006974          380 AGLYLPAKNHPRL--PWFDLI-----------------------------------------------------------  398 (623)
Q Consensus       380 ~G~~vp~~~~~~l--~~~d~i-----------------------------------------------------------  398 (623)
                      ...||||+.. .+  ++.+++                                                           
T Consensus       461 ~Ig~V~Q~~~-LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  539 (1466)
T PTZ00265        461 KIGVVSQDPL-LFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK  539 (1466)
T ss_pred             hccEeccccc-chhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence            2246777641 11  122222                                                           


Q ss_pred             -------------HHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974          399 -------------LADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALA  453 (623)
Q Consensus       399 -------------~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~  453 (623)
                                   +..+++.+.+           ....+.|||||+ |+++|++++.+|++|||||||++||+.....+.
T Consensus       540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~  619 (1466)
T PTZ00265        540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ  619 (1466)
T ss_pred             ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence                         1123333322           345689999999 899999999999999999999999999999998


Q ss_pred             HHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCce
Q 006974          454 TSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAA  490 (623)
Q Consensus       454 ~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~  490 (623)
                      .++.+ +.+ .|.|+|++||+++....||+++.+.+|+
T Consensus       620 ~~L~~-~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~  656 (1466)
T PTZ00265        620 KTINN-LKGNENRITIIIAHRLSTIRYANTIFVLSNRE  656 (1466)
T ss_pred             HHHHH-HhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence            85544 543 5789999999998778999999998874

>PLN03140 ABC transporter G family member; Provisional

Probab=99.80  E-value=4.4e-19  Score=218.17  Aligned_cols=167  Identities=17%  Similarity=0.205  Sum_probs=130.3

Q ss_pred             cEEEceeeeecC-------------Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------
Q 006974          326 EMTVGSLSKGIS-------------DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------  376 (623)
Q Consensus       326 ~l~~~~l~~~y~-------------~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------  376 (623)
                      .+..+||++...             ...+  ++|+.+.+| ++++|+|||||||||||++| |....             
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence            578899987763             2234  999999999 99999999999999999999 55421             


Q ss_pred             -----hhhhceeecCCCC--CCccH------------------------HHHHHHHcCCchhhhccc-----ccccHHHH
Q 006974          377 -----MSKAGLYLPAKNH--PRLPW------------------------FDLILADIGDHQSLEQNL-----STFSGHIS  420 (623)
Q Consensus       377 -----~a~~G~~vp~~~~--~~l~~------------------------~d~i~~~ig~~~~~~~~~-----stfS~g~~  420 (623)
                           ..+...|+|+...  ..+++                        ++.++..+|+.+..+..+     +.||||||
T Consensus       946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140        946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred             CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence                 0122357777631  11111                        334566677766666654     68999999


Q ss_pred             -HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeC-ceEEEe
Q 006974          421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFS  494 (623)
Q Consensus       421 -rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~-g~~~~~  494 (623)
                       |+.++++++.+|++++|||||+|||+.....+.. +++.+++.|.|||++||+.+  +..++|+...+.+ |++.+.
T Consensus      1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140       1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence             8999999999999999999999999999999999 55667777899999999986  4678999999986 787665

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.80  E-value=2.9e-19  Score=204.87  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=122.5

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceeecCCCC--CCccH-----
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW-----  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~vp~~~~--~~l~~-----  394 (623)
                      ++|+.+.+| ++++|+|||||||||||+++ |....-                   .+...|+|++..  ..+++     
T Consensus        43 ~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~  121 (617)
T TIGR00955        43 NVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM  121 (617)
T ss_pred             CCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence            999999999 99999999999999999999 554321                   112257787641  11111     


Q ss_pred             -------------------HHHHHHHcCCchhhhcccc------cccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          395 -------------------FDLILADIGDHQSLEQNLS------TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       395 -------------------~d~i~~~ig~~~~~~~~~s------tfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                                         ++.++..+|+.+..+..+.      .+|||++ |++++++++.+|++++|||||+|||+..
T Consensus       122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~  201 (617)
T TIGR00955       122 FQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFM  201 (617)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHH
Confidence                               3456677777766666655      5999999 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEEec
Q 006974          449 GVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       449 ~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~~~  495 (623)
                      ...+.. .++.+.+.|.|+|++||+..  +..++|++..+.+|++.+..
T Consensus       202 ~~~l~~-~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G  249 (617)
T TIGR00955       202 AYSVVQ-VLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG  249 (617)
T ss_pred             HHHHHH-HHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence            999999 45567777899999999973  67899999999999998763

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.80  E-value=3.6e-19  Score=219.70  Aligned_cols=165  Identities=15%  Similarity=0.182  Sum_probs=126.4

Q ss_pred             CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------
Q 006974          325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------  377 (623)
                      +.++++||+|+|++   .+|  ++||++++| +.++|+||+||||||+++++ |+..+.                     
T Consensus      1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G-~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265       1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSK-KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred             ceEEEEEEEEECCCCCCCccccCeeEEEcCC-CEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence            46999999999953   345  999999999 99999999999999999999 665541                     


Q ss_pred             ----------------------------------------------------hhhceeecCCCCCCc--cHHH-------
Q 006974          378 ----------------------------------------------------SKAGLYLPAKNHPRL--PWFD-------  396 (623)
Q Consensus       378 ----------------------------------------------------a~~G~~vp~~~~~~l--~~~d-------  396 (623)
                                                                          .+...||||+.. .+  ++.+       
T Consensus      1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~-LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265       1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM-LFNMSIYENIKFGKE 1321 (1466)
T ss_pred             ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc-cccccHHHHHhcCCC
Confidence                                                                111236676641 11  1112       


Q ss_pred             --------HHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006974          397 --------LILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI  456 (623)
Q Consensus       397 --------~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~al  456 (623)
                              ......++.+.+           ...-..|||||+ |+++|++++.+|++|||||||++||+.....+..++
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence                    223333433332           234567999999 899999999999999999999999999999998866


Q ss_pred             HHHHh-cCCcEEEEEcCchhHHhhccccceeeC----ceEE
Q 006974          457 LQYLR-DRVGLAVVTTHYADLSCLKDKDTRFEN----AATE  492 (623)
Q Consensus       457 l~~l~-~~~~~vii~TH~~~l~~~~~~~~~i~~----g~~~  492 (623)
                      .+ +. .++.|+|++||.+.....||+++++.+    |++.
T Consensus      1402 ~~-~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265       1402 VD-IKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred             HH-HhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence            54 44 357899999999998788999999998    7754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=2.8e-19  Score=163.53  Aligned_cols=149  Identities=19%  Similarity=0.212  Sum_probs=122.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh---------------------hhhhc
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL---------------------MSKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~---------------------~a~~G  381 (623)
                      .+.++||+.+.++...  +++++|.+| +++-|.||+||||||||.-+ |.+..                     ..|.|
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G   80 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG   80 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence            4678899988888776  899999999 99999999999999999988 54421                     12333


Q ss_pred             eeecCCC--CCCc--------------------cHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          382 LYLPAKN--HPRL--------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       382 ~~vp~~~--~~~l--------------------~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      . ++++.  +..+                    ...+..++++|+....++.+.++|||++ |+++.+.+...|+++|||
T Consensus        81 i-LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD  159 (213)
T COG4136          81 I-LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD  159 (213)
T ss_pred             e-eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence            2 22221  0111                    1145568899999999999999999999 999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL  476 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l  476 (623)
                      ||++.||..-+..+.+-+...++..|.-+|.+|||+.-
T Consensus       160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D  197 (213)
T COG4136         160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD  197 (213)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence            99999999999999998888888888899999999763

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=2.9e-19  Score=208.79  Aligned_cols=161  Identities=19%  Similarity=0.241  Sum_probs=121.0

Q ss_pred             CCCcEEEceeeeecCCcc---c--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCc-----
Q 006974          323 ENSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRL-----  392 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~~~---v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l-----  392 (623)
                      -+|.++++||+|+|+.++   |  +++|.+++| +.++|+||+||||||+++.+        .++|-|..|...+     
T Consensus       347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G-~~valVG~SGsGKST~i~LL--------~RfydP~~G~V~idG~di  417 (1228)
T KOG0055|consen  347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSG-QTVALVGPSGSGKSTLIQLL--------ARFYDPTSGEVLIDGEDI  417 (1228)
T ss_pred             cccceEEEEEEecCCCCCcchhhCCeEEEeCCC-CEEEEECCCCCCHHHHHHHH--------HHhcCCCCceEEEcCccc
Confidence            357899999999998654   3  899999999 99999999999999999999        4444444442111     


Q ss_pred             ------------------------cHHHHHH---------------HHcCCchh-----------hhcccccccHHHH-H
Q 006974          393 ------------------------PWFDLIL---------------ADIGDHQS-----------LEQNLSTFSGHIS-R  421 (623)
Q Consensus       393 ------------------------~~~d~i~---------------~~ig~~~~-----------~~~~~stfS~g~~-r  421 (623)
                                              +..++|.               ...+..+.           +-..--.||||+| |
T Consensus       418 ~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR  497 (1228)
T KOG0055|consen  418 RNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR  497 (1228)
T ss_pred             hhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence                                    1112221               00111111           1112234999999 8


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++|++++.+|++|||||||++||+.+...+..|+ +... .|.|+|+++|.+..-+-+|.+.++++|+++..
T Consensus       498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL-d~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE~  568 (1228)
T KOG0055|consen  498 IAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ  568 (1228)
T ss_pred             HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH-HHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence            99999999999999999999999999998888854 4444 47799999999985555999999999998754

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=3.4e-19  Score=198.15  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=123.0

Q ss_pred             CCcEEEceeeeecCCcc---c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-------------------hhh
Q 006974          324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-------------------LMS  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~---v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-------------------~~a  378 (623)
                      .|.++++||+|.|+.++   |  +++|++++| ++++|+|||||||||+...+ -+..                   ++.
T Consensus       463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG-e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr  541 (716)
T KOG0058|consen  463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG-EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR  541 (716)
T ss_pred             cceEEEEEeeeecCCCCCchhhcCceeeeCCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence            46899999999997643   4  999999999 99999999999999999999 1111                   011


Q ss_pred             hhceeecCCCCCCcc--HHHHHH------------------------HHc--CCchhhhcccccccHHHH-HHHHHHHhc
Q 006974          379 KAGLYLPAKNHPRLP--WFDLIL------------------------ADI--GDHQSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       379 ~~G~~vp~~~~~~l~--~~d~i~------------------------~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      +...+|-|++ ..++  +.++|.                        ..+  |.+-.+...-+.||||+| |+++|++++
T Consensus       542 ~~Ig~V~QEP-vLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  542 RKIGLVGQEP-VLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             HHeeeeeccc-eeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            1122333332 1111  112221                        011  111223345679999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|.+|||||-|+.||.++-..+.+++-+ +.+ +.|||++.|.+...+-||.+.++++|+++..
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~-~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~  683 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDR-LMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEM  683 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHH-hhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence            99999999999999999998888885444 343 4899999999998889999999999998754

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.79  E-value=9e-19  Score=187.20  Aligned_cols=168  Identities=24%  Similarity=0.284  Sum_probs=129.3

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~  379 (623)
                      ++.+.++++++.-.+  +++  +++|.+.+| +.++|+||+|||||||.|++ |...+                   +++
T Consensus       332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~  410 (580)
T COG4618         332 QGALSVERLTAAPPGQKKPILKGISFALQAG-EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR  410 (580)
T ss_pred             CceeeEeeeeecCCCCCCcceecceeEecCC-ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence            467888888875533  233  999999999 99999999999999999999 55432                   223


Q ss_pred             hceeecCCCCCCccH-HHHHHHHcC---------------------------CchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          380 AGLYLPAKNHPRLPW-FDLILADIG---------------------------DHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       380 ~G~~vp~~~~~~l~~-~d~i~~~ig---------------------------~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      ...|.||+-. .++. +.+=.++++                           -+-.+-..-++||||+| |+.+++++-.
T Consensus       411 hiGYLPQdVe-LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG  489 (580)
T COG4618         411 HIGYLPQDVE-LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG  489 (580)
T ss_pred             ccCcCcccce-ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence            3346777531 1111 111112222                           12233445689999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|.||+||||-++||...-.+|..+|.. ++.+|+|+|++||-..+...+|++..+.+|.+...
T Consensus       490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~-~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~F  552 (580)
T COG4618         490 DPFLVVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASVDKILVLQDGRIAAF  552 (580)
T ss_pred             CCcEEEecCCCCCcchhHHHHHHHHHHH-HHHcCCEEEEEecCHHHHhhcceeeeecCChHHhc
Confidence            9999999999999999999999997765 78889999999999999999999999999988644

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.79  E-value=1.2e-18  Score=173.93  Aligned_cols=160  Identities=20%  Similarity=0.202  Sum_probs=107.7

Q ss_pred             EEEceeeeecCCcccccccccc-CCceEEEEEcCCCCCHHHHHHHHh--hhhhh---------hh---------hceeec
Q 006974          327 MTVGSLSKGISDFPVPIDIKVE-CETRVVVITGPNTGGKTASMKTLG--LASLM---------SK---------AGLYLP  385 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~-~g~~~~~I~GpNgsGKSTlLk~ig--l~~~~---------a~---------~G~~vp  385 (623)
                      ++++|+. +|.+. ..++|... +| ++++|+|||||||||+|++|.  +.-..         ..         ...+++
T Consensus         6 i~l~nf~-~y~~~-~~i~~~~~~~~-~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f   82 (213)
T cd03279           6 LELKNFG-PFREE-QVIDFTGLDNN-GLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTF   82 (213)
T ss_pred             EEEECCc-CcCCc-eEEeCCCCCcc-CEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEE
Confidence            5667776 54332 23445443 35 799999999999999999992  21000         00         001122


Q ss_pred             CCCCC--------CccH--HHHH--HHHcCCchhhhcccccccHHHH-HHHHHHHhcC----------CCcEEEEeCCCC
Q 006974          386 AKNHP--------RLPW--FDLI--LADIGDHQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGS  442 (623)
Q Consensus       386 ~~~~~--------~l~~--~d~i--~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~----------~~~LlLLDEp~~  442 (623)
                      +....        .++.  +.+.  +...+....+++++.+||+|++ +++++++++.          +|+++|||||++
T Consensus        83 ~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~  162 (213)
T cd03279          83 QLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFG  162 (213)
T ss_pred             EECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcc
Confidence            21110        0111  2221  1222356677899999999999 7888888864          578999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCce
Q 006974          443 GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAA  490 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~  490 (623)
                      |+|+.....+.. ++..+.+.+.|+|++||+++ +..+++++..+.+|.
T Consensus       163 ~lD~~~~~~~~~-~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~  210 (213)
T cd03279         163 TLDPEALEAVAT-ALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG  210 (213)
T ss_pred             cCCHHHHHHHHH-HHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence            999999999988 45566766889999999988 456778777777764

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.78  E-value=1.4e-18  Score=180.90  Aligned_cols=166  Identities=16%  Similarity=0.201  Sum_probs=132.3

Q ss_pred             cEEEceeeeecC----Ccc-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--------------------
Q 006974          326 EMTVGSLSKGIS----DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--------------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~----~~~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--------------------  378 (623)
                      .+.++|++..|+    ... | ++||++.+| +.++|+|.+|||||+....+ +|+...+                    
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se   84 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE   84 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence            467889999885    222 3 999999999 99999999999999998888 7765310                    


Q ss_pred             --------hhceeecCCCCCCccHHH--------------------------HHHHHcCCc---hhhhcccccccHHHH-
Q 006974          379 --------KAGLYLPAKNHPRLPWFD--------------------------LILADIGDH---QSLEQNLSTFSGHIS-  420 (623)
Q Consensus       379 --------~~G~~vp~~~~~~l~~~d--------------------------~i~~~ig~~---~~~~~~~stfS~g~~-  420 (623)
                              .....+++++...++++.                          .++..+|+.   ..++..+..||||++ 
T Consensus        85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ  164 (534)
T COG4172          85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ  164 (534)
T ss_pred             HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence                    112356666544443311                          345667764   367889999999999 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      |+.+|++++++|+|+|.||||+.||..-.+.|.. ++..|. +.|..++++|||+. +..++|++.++..|.++.
T Consensus       165 RVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE  238 (534)
T COG4172         165 RVMIAMALANEPDLLIADEPTTALDVTVQAQILD-LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE  238 (534)
T ss_pred             HHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH-HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence            8999999999999999999999999999999999 555555 56899999999998 668999999999998764

>PLN03232 ABC transporter C family member; Provisional

Probab=99.78  E-value=9.1e-19  Score=217.60  Aligned_cols=166  Identities=14%  Similarity=0.109  Sum_probs=129.4

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~  380 (623)
                      |.++++||+++|+.  .++  ++||++++| +.++|+||+|||||||++++ |+..+                   +.+.
T Consensus      1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G-ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPS-EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred             CcEEEEEEEEEECCCCCcccccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence            56999999999953  345  999999999 99999999999999999999 65532                   1233


Q ss_pred             ceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCC
Q 006974          381 GLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       381 G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      -.++||++. .++  +              +.+.+...++.+.+           ..+-+.|||||| |+++|++++.+|
T Consensus      1312 i~iVpQdp~-LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232       1312 LSIIPQSPV-LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred             cEEECCCCe-eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            458888752 111  1              22334444544433           334568999999 799999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++|||||||+++|+.....+.+++.+. . +++|+|++||.++....||+++++++|++...
T Consensus      1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~-~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232       1391 KILVLDEATASVDVRTDSLIQRTIREE-F-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHH-c-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999988888855543 2 37899999999987777999999999998643

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.78  E-value=2.5e-18  Score=176.04  Aligned_cols=96  Identities=29%  Similarity=0.268  Sum_probs=81.9

Q ss_pred             HHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974          398 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       398 i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH  472 (623)
                      ++..+|+.. .+++.+++|||||+ |++++++++.+   |+++||||||+|||+.+...+.. ++..+.+.|.|+|++||
T Consensus       152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH  230 (261)
T cd03271         152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEH  230 (261)
T ss_pred             HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeC
Confidence            345678876 57899999999999 89999998875   79999999999999999999999 56667777899999999


Q ss_pred             chhHHhhcccccee------eCceEEEe
Q 006974          473 YADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       473 ~~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      ++++...||+++.+      .+|++.+.
T Consensus       231 ~~~~i~~aD~ii~Lgp~~g~~~G~iv~~  258 (261)
T cd03271         231 NLDVIKCADWIIDLGPEGGDGGGQVVAS  258 (261)
T ss_pred             CHHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence            99877789998888      57777654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.78  E-value=1e-18  Score=217.70  Aligned_cols=167  Identities=13%  Similarity=0.114  Sum_probs=130.0

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~  379 (623)
                      +|.++++||+++|.+  .+|  ++||++++| +.++|+||+||||||+++++ ++..+                   +.+
T Consensus      1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~G-ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130       1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPS-EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred             CCcEEEEEEEEEeCCCCCceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence            357999999999964  245  999999999 99999999999999999999 55432                   123


Q ss_pred             hceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974          380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      .-.++||++. .++  +              +.+.+...++.+.+           ..+-+.|||||| |+++|++++.+
T Consensus      1314 ~IsiVpQdp~-LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130       1314 VLGIIPQAPV-LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred             ccEEECCCCc-cccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence            3458888752 111  1              12334444444433           334568999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++|||||||+++|+..-..+.+++.+. . +++|+|+++|.++...-||+++++++|++...
T Consensus      1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~-~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130       1393 SKILVLDEATAAVDVRTDALIQKTIREE-F-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHH-C-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999998888865543 2 37899999999987677999999999998654

>PTZ00243 ABC transporter; Provisional

Probab=99.78  E-value=1.7e-18  Score=215.29  Aligned_cols=167  Identities=13%  Similarity=0.160  Sum_probs=130.4

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~  379 (623)
                      .|.|+++||+++|++  ..+  ++||++.+| +.++|+|++|||||||++++ |+..+                   +.+
T Consensus      1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~G-ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243       1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPR-EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred             CCeEEEEEEEEEeCCCCCceeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence            357999999999964  334  999999999 99999999999999999999 55532                   123


Q ss_pred             hceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974          380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      .-.++||++. .++  +              +.+++...|+.+.+           ..+-+.||||+| |+++|++++.+
T Consensus      1385 ~I~iVpQdp~-LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243       1385 QFSMIPQDPV-LFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred             cceEECCCCc-cccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence            3468898852 111  1              22344555554433           234478999999 79999999985


Q ss_pred             -CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 -ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 -~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                       |++|||||||+++|+..-..+...+.+.+  +++|+|+++|..+....||+++++++|++...
T Consensus      1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243       1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence             89999999999999999999988655432  36899999999997788999999999998643

>PLN03130 ABC transporter C family member; Provisional

Probab=99.78  E-value=2.3e-18  Score=214.45  Aligned_cols=168  Identities=15%  Similarity=0.148  Sum_probs=131.0

Q ss_pred             CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------hhceeecCCCCC-
Q 006974          325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHP-  390 (623)
Q Consensus       325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~~G~~vp~~~~~-  390 (623)
                      +.++++|++++|++   .++  ++||++++| +.++|+||+|||||||++++ |...+..       ....|+||++.. 
T Consensus       613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf  691 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF  691 (1622)
T ss_pred             CceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence            46899999999964   344  999999999 99999999999999999999 7776543       123588887521 


Q ss_pred             CccH--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          391 RLPW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       391 ~l~~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                      .-++              +++++...++.+++           ...-.+||||+| |+++|+++..+|+++||||||+++
T Consensus       692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL  771 (1622)
T PLN03130        692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL  771 (1622)
T ss_pred             CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence            0011              33344444443333           344568999999 899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          445 DPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+..+..+...++..+. ++.|+|++||.......+|+++.+++|++...
T Consensus       772 D~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~  820 (1622)
T PLN03130        772 DAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE  820 (1622)
T ss_pred             CHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence            99999888765555433 47899999999998888999999999998654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.78  E-value=1.8e-18  Score=215.08  Aligned_cols=167  Identities=15%  Similarity=0.135  Sum_probs=130.6

Q ss_pred             CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-------hhceeecCCCCCC
Q 006974          325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-------KAGLYLPAKNHPR  391 (623)
Q Consensus       325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-------~~G~~vp~~~~~~  391 (623)
                      +.++++|++++|++   .++  ++||++++| +.++|+||+|||||||++++ |...+..       ....|+||+.. -
T Consensus       613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~-L  690 (1495)
T PLN03232        613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSW-I  690 (1495)
T ss_pred             CcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccc-c
Confidence            46899999999964   344  999999999 99999999999999999999 6665432       23358888752 1


Q ss_pred             c--cH--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          392 L--PW--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       392 l--~~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                      +  ++              +.+++...++.+++           ..+-.+|||||| |+++|+++..+|+++||||||++
T Consensus       691 f~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSa  770 (1495)
T PLN03232        691 FNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA  770 (1495)
T ss_pred             ccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            1  11              23344444444333           234457999999 89999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+..+..+.+.++.... ++.|+|++||.......+|+++.+++|++...
T Consensus       771 LD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~  820 (1495)
T PLN03232        771 LDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE  820 (1495)
T ss_pred             cCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence            999999988776655433 46899999999988888999999999988654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.78  E-value=2.4e-18  Score=213.69  Aligned_cols=166  Identities=18%  Similarity=0.192  Sum_probs=130.4

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhc
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G  381 (623)
                      |.++++||+++|+.  ..+  ++||++.+| +.++|+|++|||||||++++ |+...                  +.+.-
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~G-ekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGG-QRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence            57999999999964  445  999999999 99999999999999999999 66531                  12233


Q ss_pred             eeecCCCCCCcc--H--------------HHHHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHPRLP--W--------------FDLILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .++||++. .++  +              +.+++...++.+.+.+           .-..||||++ ++++|++++.+|+
T Consensus      1295 s~IpQdp~-LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ 1373 (1490)
T TIGR01271      1295 GVIPQKVF-IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAK 1373 (1490)
T ss_pred             EEEeCCCc-cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCC
Confidence            58898862 221  1              2234555665544332           3357999999 7999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||||||+++|+..-..+...+.+..  .++|+|++||.++....+|+++++++|++...
T Consensus      1374 ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271      1374 ILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999888888555432  36899999999987777999999999998643

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.77  E-value=1.8e-18  Score=215.36  Aligned_cols=169  Identities=14%  Similarity=0.103  Sum_probs=129.3

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC-Cc
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RL  392 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~-~l  392 (623)
                      +.++++|+++.|++  .++  ++||++++| ++++|+|||||||||||+++ |+..+..      ....|+||+... ..
T Consensus       635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~  713 (1522)
T TIGR00957       635 NSITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND  713 (1522)
T ss_pred             CcEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCC
Confidence            36899999999974  334  999999999 99999999999999999999 7665421      122578887421 01


Q ss_pred             cHH--------------HHHHHHcCC-----------chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          393 PWF--------------DLILADIGD-----------HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       393 ~~~--------------d~i~~~ig~-----------~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      ++.              +++....++           ...+.....+|||||+ |+++|+++..+|+++||||||+++|+
T Consensus       714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~  793 (1522)
T TIGR00957       714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA  793 (1522)
T ss_pred             cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence            112              222222222           1234456789999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-hcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          447 SEGVALATSILQYL-RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       447 ~~~~~l~~all~~l-~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      .....+...+.... ..++.|+|++||+.+....||+++.+.+|++...
T Consensus       794 ~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~  842 (1522)
T TIGR00957       794 HVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEM  842 (1522)
T ss_pred             HHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEee
Confidence            99999998766421 1236899999999987677999999999988654

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.77  E-value=4.5e-18  Score=177.18  Aligned_cols=169  Identities=17%  Similarity=0.129  Sum_probs=132.1

Q ss_pred             CCcEEEceeeeecCC------------ccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------
Q 006974          324 NSEMTVGSLSKGISD------------FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------  376 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~------------~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------  376 (623)
                      ...++.++|...|.-            +.| ++||++.+| +.++|+|.+|||||||=.++ .|+..             
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~  352 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG  352 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc
Confidence            456888888887731            113 899999999 99999999999999998877 45431             


Q ss_pred             --------hhhhceeecCCCCCCccH---------------------------HHHHHHHcCCc-hhhhcccccccHHHH
Q 006974          377 --------MSKAGLYLPAKNHPRLPW---------------------------FDLILADIGDH-QSLEQNLSTFSGHIS  420 (623)
Q Consensus       377 --------~a~~G~~vp~~~~~~l~~---------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~  420 (623)
                              +.+---.|+++++..+++                           +-..+..+|++ ...++++..||||++
T Consensus       353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR  432 (534)
T COG4172         353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR  432 (534)
T ss_pred             cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence                    111123456655433322                           12345667754 568899999999999


Q ss_pred             -HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          421 -RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       421 -rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                       |+++|++++.+|++++|||||+.||..-...+.. ++..|.+ .+.+-+|+|||+. +..+|++++++.+|+++..
T Consensus       433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~-LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~  508 (534)
T COG4172         433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLD-LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ  508 (534)
T ss_pred             hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH-HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence             8999999999999999999999999999999999 6666654 5778999999998 6789999999999998765

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=8.1e-19  Score=183.33  Aligned_cols=153  Identities=23%  Similarity=0.318  Sum_probs=116.5

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC------CCccHHH
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH------PRLPWFD  396 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~------~~l~~~d  396 (623)
                      ++-+.+|+|.|. .+++  .++|-|+-. ..++|+||||.||||||+.+        .|-+-|..|.      ..+++||
T Consensus       586 vLGlH~VtFgy~gqkpLFkkldFGiDmd-SRiaIVGPNGVGKSTlLkLL--------~Gkl~P~~GE~RKnhrL~iG~Fd  656 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQKPLFKKLDFGIDMD-SRIAIVGPNGVGKSTLLKLL--------IGKLDPNDGELRKNHRLRIGWFD  656 (807)
T ss_pred             eeecccccccCCCCCchhhccccccccc-ceeEEECCCCccHHHHHHHH--------hcCCCCCcchhhccceeeeechh
Confidence            456789999994 4444  888888877 78999999999999999999        7766676652      2345555


Q ss_pred             HH-----------------------------HHHcCCchhh-hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974          397 LI-----------------------------LADIGDHQSL-EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD  445 (623)
Q Consensus       397 ~i-----------------------------~~~ig~~~~~-~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD  445 (623)
                      +-                             +-.+|+.... .-.+..||||++ |++++--.+..|+++||||||++||
T Consensus       657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD  736 (807)
T KOG0066|consen  657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD  736 (807)
T ss_pred             hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence            32                             2233333222 235778999999 9999888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceE
Q 006974          446 PSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAAT  491 (623)
Q Consensus       446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~  491 (623)
                      ..+..+|+.||-+|    ++.||++|||..+ ...-...|++.+..+
T Consensus       737 IESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i  779 (807)
T KOG0066|consen  737 IESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGI  779 (807)
T ss_pred             hhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCCh
Confidence            99999999998888    8899999999663 333334566666544

>PTZ00243 ABC transporter; Provisional

Probab=99.76  E-value=3e-18  Score=213.13  Aligned_cols=158  Identities=16%  Similarity=0.189  Sum_probs=121.1

Q ss_pred             ecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC-CccHHHH-------
Q 006974          335 GISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP-RLPWFDL-------  397 (623)
Q Consensus       335 ~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~-~l~~~d~-------  397 (623)
                      .++++.+  ++||++++| ++++|+|||||||||||+++ |++.+.      .+...|+||.... ..++.++       
T Consensus       669 ~~~~~~iL~~isl~i~~G-~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~  747 (1560)
T PTZ00243        669 ELEPKVLLRDVSVSVPRG-KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEE  747 (1560)
T ss_pred             ccCCceeEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChh
Confidence            3344444  999999999 99999999999999999999 766542      1223578887421 1111121       


Q ss_pred             -------HH---------HHc--CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974          398 -------IL---------ADI--GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       398 -------i~---------~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~  458 (623)
                             ++         ..+  |+...+.....+|||||+ |+++|++++.+|+++|||||+++||+..+..+...++.
T Consensus       748 ~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~  827 (1560)
T PTZ00243        748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL  827 (1560)
T ss_pred             hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence                   11         122  444556778899999999 89999999999999999999999999998888765543


Q ss_pred             HHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          459 YLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       459 ~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ... .+.|+|++||+.++...||+++.+.+|++.+.
T Consensus       828 ~~~-~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~  862 (1560)
T PTZ00243        828 GAL-AGKTRVLATHQVHVVPRADYVVALGDGRVEFS  862 (1560)
T ss_pred             Hhh-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence            332 47899999999997788999999999998765

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.76  E-value=3.1e-18  Score=213.21  Aligned_cols=167  Identities=10%  Similarity=0.046  Sum_probs=129.4

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~  379 (623)
                      +|.++++||+++|++  ..+  ++||++++| +.++|+||+|||||||++++ ++..+                   +.+
T Consensus      1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G-ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957      1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGG-EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred             CCcEEEEEEEEEeCCCCcccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence            357999999999964  345  999999999 99999999999999999999 55432                   123


Q ss_pred             hceeecCCCCCCcc--H--------------HHHHHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCC
Q 006974          380 AGLYLPAKNHPRLP--W--------------FDLILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       380 ~G~~vp~~~~~~l~--~--------------~d~i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      .-.++||++. .++  +              +.+.+...++.+.+           ..+-+.||||++ |+++|++++.+
T Consensus      1361 ~i~iVpQdp~-LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957      1361 KITIIPQDPV-LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred             cCeEECCCCc-ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence            3458888852 111  0              12334444444332           234467999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++|||||||+++|+..-..+.+++.+..  +++|+|+++|..+....+|+++++++|++...
T Consensus      1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957      1440 TKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999888887554432  36899999999997778999999999998644

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.76  E-value=3.1e-18  Score=212.67  Aligned_cols=166  Identities=17%  Similarity=0.103  Sum_probs=124.1

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCC-CccHHH
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHP-RLPWFD  396 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~-~l~~~d  396 (623)
                      .++++|+++.+. ..+ ++||++++| ++++|+|||||||||||+++ |+..+...      ...|+|+.... ..++.+
T Consensus       428 ~~~~~~~s~~~~-~~l~~i~l~i~~G-~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~e  505 (1490)
T TIGR01271       428 GLFFSNFSLYVT-PVLKNISFKLEKG-QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKD  505 (1490)
T ss_pred             cccccccccccC-cceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHH
Confidence            456667766532 123 999999999 99999999999999999999 77654321      12478887521 012223


Q ss_pred             HH--------------HHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974          397 LI--------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV  450 (623)
Q Consensus       397 ~i--------------~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~  450 (623)
                      ++              +...++.+.           +.....+|||||+ |+++|++++.+|+++|||||++++|+..+.
T Consensus       506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~  585 (1490)
T TIGR01271       506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK  585 (1490)
T ss_pred             HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence            22              222222222           3345689999999 899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       451 ~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+...++..+.+ +.|+|++||+++....||+++.+.+|++...
T Consensus       586 ~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~  628 (1490)
T TIGR01271       586 EIFESCLCKLMS-NKTRILVTSKLEHLKKADKILLLHEGVCYFY  628 (1490)
T ss_pred             HHHHHHHHHHhc-CCeEEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence            999865554443 7899999999986677999999999988654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.76  E-value=7.8e-18  Score=171.02  Aligned_cols=77  Identities=25%  Similarity=0.232  Sum_probs=65.0

Q ss_pred             hhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccc
Q 006974          408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK  482 (623)
Q Consensus       408 ~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~  482 (623)
                      .+..+.+||+||+ |++++++++    .+|+++|+||||+|+||.....+...+ ..+.+ +.++|++||..++..+||+
T Consensus       152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-~~~~~-~~~ii~~~h~~~~~~~~d~  229 (243)
T cd03272         152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-KELSD-GAQFITTTFRPELLEVADK  229 (243)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC-CCEEEEEecCHHHHhhCCE
Confidence            3568899999999 799998885    468999999999999999999999854 44555 6788999999888889998


Q ss_pred             ccee
Q 006974          483 DTRF  486 (623)
Q Consensus       483 ~~~i  486 (623)
                      ++.+
T Consensus       230 i~~l  233 (243)
T cd03272         230 FYGV  233 (243)
T ss_pred             EEEE
Confidence            8764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.75  E-value=4.2e-18  Score=169.85  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=102.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhh------hhh-hhhceeecCCCCC-------
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLA------SLM-SKAGLYLPAKNHP-------  390 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~------~~~-a~~G~~vp~~~~~-------  390 (623)
                      ++++|.- +|++..+  ++++      ++++|+|||||||||+|++|..+      ... .+.| ++|+....       
T Consensus         6 l~l~nfk-~~~~~~~l~~~~~------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~   77 (212)
T cd03274           6 LVLENFK-SYAGEQVIGPFHK------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSC   77 (212)
T ss_pred             EEEECcc-cCCCCeeeccCCC------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceE
Confidence            3444544 5655444  5554      58999999999999999998322      011 1122 22332200       


Q ss_pred             -------Cc---cH----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc----CCCcEEEEeC
Q 006974          391 -------RL---PW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDE  439 (623)
Q Consensus       391 -------~l---~~----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDE  439 (623)
                             .+   +.                ...+...+++.+..++.++.||+||+ ++.++++++    .+|+++++||
T Consensus        78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE  157 (212)
T cd03274          78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE  157 (212)
T ss_pred             EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC
Confidence                   00   00                01122334455566778899999999 788888775    3589999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      ||+|+||.....+.. ++..+.+ +.++|++||+.++..+||+++.+.
T Consensus       158 Pt~gLD~~~~~~l~~-~l~~~~~-~~~~iivs~~~~~~~~~d~v~~~~  203 (212)
T cd03274         158 IDAALDFRNVSIVAN-YIKERTK-NAQFIVISLRNNMFELADRLVGIY  203 (212)
T ss_pred             CCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECcHHHHHhCCEEEEEE
Confidence            999999999999998 4555554 578999999988889999887653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PLN03140 ABC transporter G family member; Provisional

Probab=99.74  E-value=5.4e-18  Score=208.63  Aligned_cols=151  Identities=18%  Similarity=0.225  Sum_probs=118.3

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhceeecCCCC--CCccH-----
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLYLPAKNH--PRLPW-----  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~vp~~~~--~~l~~-----  394 (623)
                      ++|+.+.+| ++++|+||||||||||||++ |.+...                   .+...|+|+...  ..+++     
T Consensus       183 ~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~  261 (1470)
T PLN03140        183 DASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD  261 (1470)
T ss_pred             CCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHH
Confidence            999999999 99999999999999999999 665321                   012246666531  11111     


Q ss_pred             --------------------------------------------------HHHHHHHcCCchhh-----hcccccccHHH
Q 006974          395 --------------------------------------------------FDLILADIGDHQSL-----EQNLSTFSGHI  419 (623)
Q Consensus       395 --------------------------------------------------~d~i~~~ig~~~~~-----~~~~stfS~g~  419 (623)
                                                                        .+.++..+|+.+..     +..+..+||||
T Consensus       262 f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGe  341 (1470)
T PLN03140        262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQ  341 (1470)
T ss_pred             HHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccc
Confidence                                                              13345556665433     45668999999


Q ss_pred             H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCch--hHHhhccccceeeCceEEEe
Q 006974          420 S-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       420 ~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~~  494 (623)
                      | |+.++.+++.+|+++++||||+|||+.....+... ++.+.+ .|.|+|++||+.  ++..++|++..+.+|++.+.
T Consensus       342 rkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~-Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~  419 (1470)
T PLN03140        342 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC-LQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ  419 (1470)
T ss_pred             ceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHH-HHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEe
Confidence            9 89999999999999999999999999999999994 455554 588999999985  57789999999999998876

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.73  E-value=1e-17  Score=174.03  Aligned_cols=160  Identities=19%  Similarity=0.276  Sum_probs=129.6

Q ss_pred             cEEEceeeeecCCc-c-c-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCcc---------
Q 006974          326 EMTVGSLSKGISDF-P-V-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP---------  393 (623)
Q Consensus       326 ~l~~~~l~~~y~~~-~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~---------  393 (623)
                      .++++||.+.|.+. + + |+++++.+| +++-|+|.||||||||++.+        .|.|.|++|...+.         
T Consensus       322 ~lelrnvrfay~~~~FhvgPiNl~ikrG-elvFliG~NGsGKST~~~LL--------tGL~~PqsG~I~ldg~pV~~e~l  392 (546)
T COG4615         322 TLELRNVRFAYQDNAFHVGPINLTIKRG-ELVFLIGGNGSGKSTLAMLL--------TGLYQPQSGEILLDGKPVSAEQL  392 (546)
T ss_pred             ceeeeeeeeccCcccceecceeeEEecC-cEEEEECCCCCcHHHHHHHH--------hcccCCCCCceeECCccCCCCCH
Confidence            48899999999764 2 4 999999999 99999999999999999999        88888888742221         


Q ss_pred             -----HHHHHHHHcCC-------ch-----hh----------------hc--ccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          394 -----WFDLILADIGD-------HQ-----SL----------------EQ--NLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       394 -----~~d~i~~~ig~-------~~-----~~----------------~~--~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                           .|..+|++..+       ++     .+                +.  ..-.||.|+| |++.+.+++.+++++++
T Consensus       393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~  472 (546)
T COG4615         393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL  472 (546)
T ss_pred             HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence                 13333332211       11     00                11  2346789999 99999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||=.+..||.-+..+...++-.++++|+||+.+|||-.-...+|+...++||.+...
T Consensus       473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~  529 (546)
T COG4615         473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL  529 (546)
T ss_pred             ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence            999999999999999999999999999999999999777778899999999987643

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.73  E-value=2.2e-17  Score=155.66  Aligned_cols=167  Identities=19%  Similarity=0.159  Sum_probs=129.9

Q ss_pred             EEEceeeeecCCc----------cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------
Q 006974          327 MTVGSLSKGISDF----------PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~----------~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------  377 (623)
                      ++++|++|.|...          .| ++||+++.| +.++|+|.||||||||.|++ |.+.+-                 
T Consensus         5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~   83 (267)
T COG4167           5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS   83 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCC-cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence            4567788777321          23 999999999 89999999999999999999 665431                 


Q ss_pred             --hhhceeecCCCCCCccH-----------------------HHHH---HHHcCC-chhhhcccccccHHHH-HHHHHHH
Q 006974          378 --SKAGLYLPAKNHPRLPW-----------------------FDLI---LADIGD-HQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       378 --a~~G~~vp~~~~~~l~~-----------------------~d~i---~~~ig~-~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                        ++..-.++++++..+.+                       -.+|   +..+|+ .|..+-++..+|.|++ |+++|++
T Consensus        84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARA  163 (267)
T COG4167          84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARA  163 (267)
T ss_pred             hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHH
Confidence              22223444444322222                       1122   345664 4667788999999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++-+|+++|.||..++||..-+..|....++.-.+.|...|.+|.+.. ++.++|.++++..|.|+..
T Consensus       164 LIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~  231 (267)
T COG4167         164 LILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER  231 (267)
T ss_pred             HhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence            999999999999999999999999999777755566888888888877 7889999999999998765

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.73  E-value=8.7e-18  Score=166.61  Aligned_cols=142  Identities=20%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             cccccCCceEEEEEcCCCCCHHHHHHHHh-----hhhhhh-------h---------hceeecCCC-CC------CccHH
Q 006974          344 DIKVECETRVVVITGPNTGGKTASMKTLG-----LASLMS-------K---------AGLYLPAKN-HP------RLPWF  395 (623)
Q Consensus       344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~ig-----l~~~~a-------~---------~G~~vp~~~-~~------~l~~~  395 (623)
                      ++++.+|  +++|+||||+||||||++|.     ....-.       +         ...++++.. ..      .+.++
T Consensus        17 ~l~~~~g--~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~   94 (204)
T cd03240          17 EIEFFSP--LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL   94 (204)
T ss_pred             EEecCCC--eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence            4556666  99999999999999999982     221100       0         001222222 01      11233


Q ss_pred             HHHHHH--cCCchhhhcccccccHHHHH-------HHHHHHhcCCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHhcC-C
Q 006974          396 DLILAD--IGDHQSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGV-ALATSILQYLRDR-V  464 (623)
Q Consensus       396 d~i~~~--ig~~~~~~~~~stfS~g~~r-------l~~~~~l~~~~~LlLLDEp~~glD~~~~~-~l~~all~~l~~~-~  464 (623)
                      +++...  -.....+++.+++||+|+++       ++++++++.+|+++|+|||++|+|+.... .+.. ++..+.+. +
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~-~l~~~~~~~~  173 (204)
T cd03240          95 ENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE-IIEERKSQKN  173 (204)
T ss_pred             hceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH-HHHHHHhccC
Confidence            333110  01123457789999999995       45667788999999999999999999999 8888 55556655 7


Q ss_pred             cEEEEEcCchhHHhhccccceeeC
Q 006974          465 GLAVVTTHYADLSCLKDKDTRFEN  488 (623)
Q Consensus       465 ~~vii~TH~~~l~~~~~~~~~i~~  488 (623)
                      .++|++||+.++...|++++.+..
T Consensus       174 ~~iiiitH~~~~~~~~d~i~~l~~  197 (204)
T cd03240         174 FQLIVITHDEELVDAADHIYRVEK  197 (204)
T ss_pred             CEEEEEEecHHHHhhCCEEEEEee
Confidence            899999999987778887776643

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.5e-17  Score=177.93  Aligned_cols=156  Identities=19%  Similarity=0.227  Sum_probs=121.3

Q ss_pred             cEEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCC------CCCccH-
Q 006974          326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN------HPRLPW-  394 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~------~~~l~~-  394 (623)
                      .+++.+|++.|....  +  .+++..+.. ..++++|+||.||||++|++        .|-.-|..+      ...+.+ 
T Consensus       362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~-sRi~~vg~ng~gkst~lKi~--------~~~l~~~rgi~~~~~r~ri~~f  432 (582)
T KOG0062|consen  362 NLRISYVAFEYTPSEYQWRKQLGLDRESD-SRISRVGENGDGKSTLLKIL--------KGDLTPTRGIVGRHPRLRIKYF  432 (582)
T ss_pred             eeEEEeeeccCCCcchhhhhccCCccchh-hhhheeccCchhHHHHHHHH--------hccCCcccceeeecccceecch
Confidence            467888999995433  3  666666666 67899999999999999999        222222211      011111 


Q ss_pred             -----------------------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          395 -----------------------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       395 -----------------------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                                                   +..-+.++|+. +...+++.+||||++ |+++|.....+|.||+||||||+
T Consensus       433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh  512 (582)
T KOG0062|consen  433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH  512 (582)
T ss_pred             hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc
Confidence                                         22346677865 445667899999999 99999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||..+-.+|+.|+-.+    ++.||++|||.+ +..+|...|++.+|+|.-.
T Consensus       513 LD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i  560 (582)
T KOG0062|consen  513 LDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI  560 (582)
T ss_pred             ccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence            9999999999987776    888999999988 5679999999999998753

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.72  E-value=5.6e-17  Score=184.91  Aligned_cols=151  Identities=23%  Similarity=0.315  Sum_probs=124.9

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhceeecCCCCCCcc--------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNHPRLP--------  393 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~vp~~~~~~l~--------  393 (623)
                      +++..+.+| ++++|.||.||||||||+++ |-..-                   +.+.-.||+|+. ..+|        
T Consensus        48 ~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD-~l~~~LTV~EtL  125 (613)
T KOG0061|consen   48 GVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDD-VLLPTLTVRETL  125 (613)
T ss_pred             CcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccc-cccccccHHHHH
Confidence            999999999 99999999999999999999 33321                   123345788764 2111        


Q ss_pred             -------------------HHHHHHHHcCCchhhhcccc-----cccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          394 -------------------WFDLILADIGDHQSLEQNLS-----TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       394 -------------------~~d~i~~~ig~~~~~~~~~s-----tfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                                         .++.++..+|+.+-.+..++     .+|||++ |++.+..++++|+++++||||+|||...
T Consensus       126 ~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~s  205 (613)
T KOG0061|consen  126 RFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFS  205 (613)
T ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhh
Confidence                               15678888998876666665     4999999 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeCceEEEec
Q 006974          449 GVALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       449 ~~~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~g~~~~~~  495 (623)
                      ...+.+ +++.+++.|.|||+|=|.+.  +-.+-|+...+.+|++.|..
T Consensus       206 A~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G  253 (613)
T KOG0061|consen  206 ALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG  253 (613)
T ss_pred             HHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence            999999 66667777999999999964  77888999999999988874

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.72  E-value=7.6e-18  Score=157.80  Aligned_cols=152  Identities=18%  Similarity=0.251  Sum_probs=116.1

Q ss_pred             ccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhceeecCCCC--CCcc------
Q 006974          341 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLPAKNH--PRLP------  393 (623)
Q Consensus       341 v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G~~vp~~~~--~~l~------  393 (623)
                      .|++..+..| +++-++||||+||||||-.+ |++..                  +|+.-.|..+...  ..++      
T Consensus        16 ~plS~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~   94 (248)
T COG4138          16 GPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT   94 (248)
T ss_pred             cccccccccc-eEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence            3899999999 99999999999999999888 55532                  1221222222111  1122      


Q ss_pred             ----------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc-------CCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974          394 ----------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATS  455 (623)
Q Consensus       394 ----------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~-------~~~~LlLLDEp~~glD~~~~~~l~~a  455 (623)
                                .++.|...+++.|.+.+.++.||||+- |+.++....       ....|+|+|||.++||.....++-. 
T Consensus        95 L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr-  173 (248)
T COG4138          95 LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR-  173 (248)
T ss_pred             hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH-
Confidence                      245667778899999999999999998 676665422       2346999999999999998888876 


Q ss_pred             HHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       456 ll~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++..+...|.+||+++||.+ -..-+++.+.+..|.+...
T Consensus       174 ll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~  213 (248)
T COG4138         174 LLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLAS  213 (248)
T ss_pred             HHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEee
Confidence            88889999999999999987 5577888888888877554

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.72  E-value=8.5e-17  Score=164.54  Aligned_cols=79  Identities=14%  Similarity=0.118  Sum_probs=66.3

Q ss_pred             hhhhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhc
Q 006974          406 QSLEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLK  480 (623)
Q Consensus       406 ~~~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~  480 (623)
                      +..+..+..||+|++ +++++++++    .+|+++|+||||+|+|+.....+.. ++..+.+ |.++|++||+.++...|
T Consensus       158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~-g~~ii~iSH~~~~~~~~  235 (251)
T cd03273         158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHFK-GSQFIVVSLKEGMFNNA  235 (251)
T ss_pred             HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcC-CCEEEEEECCHHHHHhC
Confidence            445678999999999 788888776    6789999999999999999999999 4444544 78999999998888889


Q ss_pred             ccccee
Q 006974          481 DKDTRF  486 (623)
Q Consensus       481 ~~~~~i  486 (623)
                      |+++.+
T Consensus       236 d~v~~~  241 (251)
T cd03273         236 NVLFRT  241 (251)
T ss_pred             CEEEEE
Confidence            987654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.71  E-value=6.1e-17  Score=165.24  Aligned_cols=76  Identities=12%  Similarity=0.092  Sum_probs=64.6

Q ss_pred             cccccccHHHH-HHHHHHHhcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974          410 QNLSTFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT  484 (623)
Q Consensus       410 ~~~stfS~g~~-rl~~~~~l~~----~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~  484 (623)
                      ..+..||+|++ ++.++++++.    +|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+.++...||+++
T Consensus       151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d~i~  229 (247)
T cd03275         151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKADALV  229 (247)
T ss_pred             hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence            34589999999 7888888765    489999999999999999999998 55556666889999999988888899876


Q ss_pred             ee
Q 006974          485 RF  486 (623)
Q Consensus       485 ~i  486 (623)
                      .+
T Consensus       230 ~~  231 (247)
T cd03275         230 GV  231 (247)
T ss_pred             EE
Confidence            65

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.71  E-value=2.6e-17  Score=202.94  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=118.1

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh----h-----------h---h----hhceeecCCCC--CCccH--
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS----L-----------M---S----KAGLYLPAKNH--PRLPW--  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~----~-----------~---a----~~G~~vp~~~~--~~l~~--  394 (623)
                      ++|+.+.+| ++++|+||||||||||||+| |+..    .           +   .    +...|+|+...  ..+++  
T Consensus        79 ~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E  157 (1394)
T TIGR00956        79 PMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGE  157 (1394)
T ss_pred             CCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHH
Confidence            899999999 99999999999999999999 6531    1           0   0    11346777531  11111  


Q ss_pred             ---------------------------HHHHHHHcCCchhhhcc-----cccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          395 ---------------------------FDLILADIGDHQSLEQN-----LSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       395 ---------------------------~d~i~~~ig~~~~~~~~-----~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                                                 .+.++..+|+.+..+..     +..|||||| |++++.+++.+|++++|||||
T Consensus       158 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT  237 (1394)
T TIGR00956       158 TLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT  237 (1394)
T ss_pred             HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence                                       12345667776655443     567999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCch--hHHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRD-RVGLAVVTTHYA--DLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+.....+.. +++.+.+ .|.|+|++||+.  ++..++|++..+.+|++.+.
T Consensus       238 sgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~  292 (1394)
T TIGR00956       238 RGLDSATALEFIR-ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF  292 (1394)
T ss_pred             CCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE
Confidence            9999999999999 5556665 488999999995  37789999999999998776

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.70  E-value=5.4e-17  Score=171.95  Aligned_cols=167  Identities=20%  Similarity=0.241  Sum_probs=124.2

Q ss_pred             CCCcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH--------hhhhh-------------hh
Q 006974          323 ENSEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL-------------MS  378 (623)
Q Consensus       323 g~~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--------gl~~~-------------~a  378 (623)
                      .+|.++++||++.|+ +++|  ++||++.+| +.++|+||+|+||||+||.+        |-|.+             ..
T Consensus       534 ~~G~i~fsnvtF~Y~p~k~vl~disF~v~pG-ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs  612 (790)
T KOG0056|consen  534 TQGKIEFSNVTFAYDPGKPVLSDISFTVQPG-KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS  612 (790)
T ss_pred             cCCeEEEEEeEEecCCCCceeecceEEecCC-cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence            457899999999995 4555  999999999 99999999999999999998        33322             23


Q ss_pred             hhceeecCCCCCCccH--H------------H---------HHHHHc-CCch----hhhcccccccHHHH-HHHHHHHhc
Q 006974          379 KAGLYLPAKNHPRLPW--F------------D---------LILADI-GDHQ----SLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       379 ~~G~~vp~~~~~~l~~--~------------d---------~i~~~i-g~~~----~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      ++| .|||+. ..+.-  +            +         +|.+++ +..+    .+-..-=.||||+| |++.|+...
T Consensus       613 ~IG-VVPQDt-vLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL  690 (790)
T KOG0056|consen  613 SIG-VVPQDT-VLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL  690 (790)
T ss_pred             hcC-cccCcc-eeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence            444 689874 21110  0            1         122221 1222    12222346999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ..|++++|||.|+.||.....+|-.+ +..+.. +.|.|++-|.+.-.--||.+.++.+|++...
T Consensus       691 K~P~iIlLDEATSALDT~tER~IQaa-L~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr  753 (790)
T KOG0056|consen  691 KAPSIILLDEATSALDTNTERAIQAA-LARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVER  753 (790)
T ss_pred             cCCcEEEEcchhhhcCCccHHHHHHH-HHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeec
Confidence            99999999999999999998888774 445555 5688999999876667888999999988654

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.69  E-value=2.8e-16  Score=155.07  Aligned_cols=145  Identities=17%  Similarity=0.136  Sum_probs=95.8

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhh--------------hhhhc------eeecCCCC--C-CccHH--H
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL--------------MSKAG------LYLPAKNH--P-RLPWF--D  396 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~--------------~a~~G------~~vp~~~~--~-~l~~~--d  396 (623)
                      +.++.+.+|  +.+|+||||+||||+|.++.+...              +-+.|      ...+..+.  . .....  +
T Consensus        14 ~~~l~f~~g--l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   91 (198)
T cd03276          14 HLQIEFGPR--VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD   91 (198)
T ss_pred             eeEEecCCC--eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence            455666666  789999999999999999843210              00001      01111110  0 01111  2


Q ss_pred             HHHHHcCCchhhhcccccccHHHH-HHHHHHHh----cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEE
Q 006974          397 LILADIGDHQSLEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVV  469 (623)
Q Consensus       397 ~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l----~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~--~~~~vii  469 (623)
                      ++...+...+..++++.+||+||+ ++.+++++    +.+|+++|||||++|+|+.....+...+.+...+  .+.++|+
T Consensus        92 ~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii  171 (198)
T cd03276          92 MARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFI  171 (198)
T ss_pred             HHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            222223335556889999999999 68877777    6999999999999999999999999966655444  2358999


Q ss_pred             EcCchhHHhhccccceeeC
Q 006974          470 TTHYADLSCLKDKDTRFEN  488 (623)
Q Consensus       470 ~TH~~~l~~~~~~~~~i~~  488 (623)
                      +||+++...-.|++.++..
T Consensus       172 ~th~~~~i~~~d~v~~~~~  190 (198)
T cd03276         172 TPQDISGLASSDDVKVFRM  190 (198)
T ss_pred             ECCcccccccccceeEEEe
Confidence            9999885443466555543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=2.1e-16  Score=185.18  Aligned_cols=166  Identities=16%  Similarity=0.205  Sum_probs=125.6

Q ss_pred             CCcEEEceeeeecCCcc---c--cccccccCCceEEEEEcCCCCCHHHHHHHH--------hhhhh-------------h
Q 006974          324 NSEMTVGSLSKGISDFP---V--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL-------------M  377 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~---v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--------gl~~~-------------~  377 (623)
                      +|.++++||+|.|+.++   |  ++++++..| +.++|+||+||||||.+-++        |-+.+             .
T Consensus       985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~G-qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen  985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAG-QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred             eeEEEEeeeEeeCCCCCCchhhcCCcEEecCC-CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence            36799999999997644   4  999999999 89999999999999999888        32221             2


Q ss_pred             hhhceeecCCCCCCc--cHHHHHHHH----------------------cCCch----hhhcccccccHHHH-HHHHHHHh
Q 006974          378 SKAGLYLPAKNHPRL--PWFDLILAD----------------------IGDHQ----SLEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 a~~G~~vp~~~~~~l--~~~d~i~~~----------------------ig~~~----~~~~~~stfS~g~~-rl~~~~~l  428 (623)
                      .++| .|.|++ ..+  +..++|.--                      .++.+    .+-..-..||||+| |+++|+++
T Consensus      1064 ~~i~-lVsQEP-~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1064 KQIG-LVSQEP-VLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred             Hhcc-eeccCc-hhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence            2333 566654 111  112222110                      01122    22334568999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|++|||||-|+.||.++-..+-+| ++.... |.|+|+++|.+..-.-||.+.+++||.+...
T Consensus      1142 lRnPkILLLDEATSALDseSErvVQeA-Ld~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEA-LDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred             HcCCCeeeeeccchhhhhhhHHHHHHH-HHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence            999999999999999999998888884 554444 6899999999998889999999999998754

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.67  E-value=3.2e-16  Score=165.56  Aligned_cols=160  Identities=24%  Similarity=0.275  Sum_probs=117.0

Q ss_pred             EEEceeeeecCCcccccc-ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh-----hceeecCCCCCCc-------
Q 006974          327 MTVGSLSKGISDFPVPID-IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-----AGLYLPAKNHPRL-------  392 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~-l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~-----~G~~vp~~~~~~l-------  392 (623)
                      ++--++.+.||+-...++ =++..| ++++++||||-|||||.|++ |.+.+...     ..+|.||--.+.+       
T Consensus       343 v~y~~~~k~~g~F~L~V~~G~i~~g-EvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~  421 (591)
T COG1245         343 VEYPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL  421 (591)
T ss_pred             eecchheeecCceEEEecCCeeecc-eEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence            444566777775333211 234456 99999999999999999999 55554311     1234444211111       


Q ss_pred             ------------cHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974          393 ------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY  459 (623)
Q Consensus       393 ------------~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~  459 (623)
                                  .+...++.-+.+.+.+++.+..||||+. |++.|++++.+.+|.|||||.+.||.+.+...+.+|.+.
T Consensus       422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~  501 (591)
T COG1245         422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRF  501 (591)
T ss_pred             HHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHH
Confidence                        1123455666778889999999999988 899999999999999999999999999999999977776


Q ss_pred             HhcCCcEEEEEcCchhHHh-hccccceee
Q 006974          460 LRDRVGLAVVTTHYADLSC-LKDKDTRFE  487 (623)
Q Consensus       460 l~~~~~~vii~TH~~~l~~-~~~~~~~i~  487 (623)
                      ....+++.+++-||..+.. ++|+..+|.
T Consensus       502 ~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         502 IENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             HhhcCceEEEEecceehhhhhhceEEEEe
Confidence            6677889999999988554 566665543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.65  E-value=9.7e-17  Score=148.15  Aligned_cols=100  Identities=27%  Similarity=0.483  Sum_probs=75.7

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhceeecCCCC--CCccH-----
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLYLPAKNH--PRLPW-----  394 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~vp~~~~--~~l~~-----  394 (623)
                      ++++++.+| ++++|+||||||||||++++ |+..+                   ..+...++|+...  ..+.+     
T Consensus         3 ~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~   81 (137)
T PF00005_consen    3 NVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES   81 (137)
T ss_dssp             EEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred             ceEEEEcCC-CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578899999 99999999999999999999 66542                   1223346666521  12221     


Q ss_pred             ---HHHHHHHcCCchhhhccc----ccccHHHH-HHHHHHHhcCCCcEEEEeCCCC
Q 006974          395 ---FDLILADIGDHQSLEQNL----STFSGHIS-RIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       395 ---~d~i~~~ig~~~~~~~~~----stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                         ++.++..++..+..+..+    +.||+|++ |+.++++++.+|+++||||||+
T Consensus        82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence               334667777655545555    99999999 8999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.64  E-value=2.3e-15  Score=177.05  Aligned_cols=95  Identities=28%  Similarity=0.250  Sum_probs=80.6

Q ss_pred             HHHcCCch-hhhcccccccHHHH-HHHHHHHhcC---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVS---RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~---~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      +..+|+.. .+++++++||+||+ |+.++.+++.   +|+++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus       812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~  890 (924)
T TIGR00630       812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHN  890 (924)
T ss_pred             HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence            45567764 47889999999999 8999998876   589999999999999999999999 555677778999999999


Q ss_pred             hhHHhhcccccee------eCceEEEe
Q 006974          474 ADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       474 ~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      +++...||+++.+      .+|++.+.
T Consensus       891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~  917 (924)
T TIGR00630       891 LDVIKTADYIIDLGPEGGDGGGTIVAS  917 (924)
T ss_pred             HHHHHhCCEEEEecCCccCCCCEEEEe
Confidence            9876789999888      57777654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=7.3e-16  Score=161.43  Aligned_cols=164  Identities=17%  Similarity=0.224  Sum_probs=116.4

Q ss_pred             EEEceeeeecCCc--cccccccccCCceEEEEEcCCCCCHHHHHHHHhhh--hhhhhhce-eecCC----CCCCc-----
Q 006974          327 MTVGSLSKGISDF--PVPIDIKVECETRVVVITGPNTGGKTASMKTLGLA--SLMSKAGL-YLPAK----NHPRL-----  392 (623)
Q Consensus       327 l~~~~l~~~y~~~--~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~--~~~a~~G~-~vp~~----~~~~l-----  392 (623)
                      |.++|.+.+-.++  +++.++.|-.| +.++++||||-|||||||.||--  .+...+-. ++-+.    ...-+     
T Consensus       265 IKiEnF~ISA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~  343 (807)
T KOG0066|consen  265 IKIENFDISAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK  343 (807)
T ss_pred             ceeeeeeeecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence            3445555554332  55889999999 99999999999999999999321  11111111 11110    00000     


Q ss_pred             ----------------------------------------------cHHHHHHHHcCCc-hhhhcccccccHHHH-HHHH
Q 006974          393 ----------------------------------------------PWFDLILADIGDH-QSLEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       393 ----------------------------------------------~~~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~  424 (623)
                                                                    +-..+|++-+|.. +..+++...||||.+ |+++
T Consensus       344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL  423 (807)
T KOG0066|consen  344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL  423 (807)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence                                                          0022456666654 345678889999999 9999


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEec
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~~  495 (623)
                      ++++-..|.||.|||||++||...   +.| +-.||.....|.+|+|||.. +..+|..++.+.+.++.++.
T Consensus       424 ARALflEPTLLMLDEPTNHLDLNA---VIW-LdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr  491 (807)
T KOG0066|consen  424 ARALFLEPTLLMLDEPTNHLDLNA---VIW-LDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR  491 (807)
T ss_pred             HHHHhcCceeeeecCCccccccce---eee-hhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence            999999999999999999999854   445 56677777889999999987 77899998888877665543

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.63  E-value=3.5e-15  Score=175.85  Aligned_cols=95  Identities=26%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             HHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~---~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      +..+|+.. .+++.+++|||||+ |+.++++++.+|   +++||||||+|||+.+...+.. ++..+.+.|.|+|++||+
T Consensus       814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~  892 (943)
T PRK00349        814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHN  892 (943)
T ss_pred             HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence            45567764 47889999999999 899999999998   9999999999999999999999 555677778999999999


Q ss_pred             hhHHhhcccccee------eCceEEEe
Q 006974          474 ADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       474 ~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      +++...||+++.+      .+|++.+.
T Consensus       893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~  919 (943)
T PRK00349        893 LDVIKTADWIIDLGPEGGDGGGEIVAT  919 (943)
T ss_pred             HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence            9876789999888      57777654

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.61  E-value=4.8e-15  Score=156.76  Aligned_cols=124  Identities=26%  Similarity=0.332  Sum_probs=100.9

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC--------------------------------------
Q 006974          348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH--------------------------------------  389 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~--------------------------------------  389 (623)
                      .+| ++++|+||||-||||.+|++        +|-.+|--+.                                      
T Consensus        98 r~G-~V~GilG~NGiGKsTalkIL--------aGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~Q  168 (591)
T COG1245          98 RPG-KVVGILGPNGIGKSTALKIL--------AGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQ  168 (591)
T ss_pred             CCC-cEEEEEcCCCccHHHHHHHH--------hCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchH
Confidence            357 89999999999999999999        4443333221                                      


Q ss_pred             --------------------CCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          390 --------------------PRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       390 --------------------~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                                          ..-+.+|.+.+.+++...+++.++.||||+. |++++++++.+.+++++|||++-||..+
T Consensus       169 YVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~q  248 (591)
T COG1245         169 YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ  248 (591)
T ss_pred             HHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHH
Confidence                                0112256677888999999999999999987 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEcCchhHH-hhcc
Q 006974          449 GVALATSILQYLRDRVGLAVVTTHYADLS-CLKD  481 (623)
Q Consensus       449 ~~~l~~all~~l~~~~~~vii~TH~~~l~-~~~~  481 (623)
                      +...+. +++.|.+.+.+||++.||+.+. -++|
T Consensus       249 Rl~~ar-~Irel~~~~k~ViVVEHDLavLD~lsD  281 (591)
T COG1245         249 RLNAAR-VIRELAEDGKYVIVVEHDLAVLDYLSD  281 (591)
T ss_pred             HHHHHH-HHHHHhccCCeEEEEechHHHHHHhhh
Confidence            999999 5556776688999999998744 3444

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.60  E-value=3.5e-15  Score=143.33  Aligned_cols=167  Identities=18%  Similarity=0.258  Sum_probs=122.6

Q ss_pred             CCcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-------hhhhhh----------c-
Q 006974          324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-------SLMSKA----------G-  381 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-------~~~a~~----------G-  381 (623)
                      +..+++.++.+.|.. .++  ++++.++.| ..+.++|.||+|||||||++ |-.       .++.+.          | 
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd   89 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD   89 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence            467899999999953 233  899999999 78999999999999999999 221       111110          0 


Q ss_pred             -ee--------------ecCCCCCCccHHHHHHHHcCCc-------------hhhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          382 -LY--------------LPAKNHPRLPWFDLILADIGDH-------------QSLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       382 -~~--------------vp~~~~~~l~~~d~i~~~ig~~-------------~~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                       +|              +|-++  .++ ...++..+|-.             -++.......|-|++ |+.+.+.++.+-
T Consensus        90 l~YLGgeW~~~~~~agevplq~--D~s-ae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf  166 (291)
T KOG2355|consen   90 LSYLGGEWSKTVGIAGEVPLQG--DIS-AEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF  166 (291)
T ss_pred             eeEecccccccccccccccccc--ccc-HHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccce
Confidence             01              11111  112 12222222211             134456788999999 688888899999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .++||||.|-.||...++.|.+-+.+.-.++|+||+.+||-.+ +.....+...+.+|++...
T Consensus       167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~  229 (291)
T KOG2355|consen  167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN  229 (291)
T ss_pred             eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence            9999999999999999999988555555567999999999977 9999999999999988653

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.60  E-value=6.3e-15  Score=180.74  Aligned_cols=95  Identities=23%  Similarity=0.232  Sum_probs=80.9

Q ss_pred             HHHHcCCchh-hhcccccccHHHH-HHHHHHHhc---CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974          398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELV---SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       398 i~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~---~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH  472 (623)
                      ++..+|+.+. +++.+.+|||||+ |++++++++   .+|+++||||||+|||+.+...+.. ++..+.+.|.|+|++||
T Consensus       792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsH  870 (1809)
T PRK00635        792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEH  870 (1809)
T ss_pred             HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence            3556788765 7899999999999 788888886   6999999999999999999999999 56667777899999999


Q ss_pred             chhHHhhccccceee------CceEEE
Q 006974          473 YADLSCLKDKDTRFE------NAATEF  493 (623)
Q Consensus       473 ~~~l~~~~~~~~~i~------~g~~~~  493 (623)
                      ++++..++|++..+.      +|++..
T Consensus       871 dl~~i~~aDrVi~L~p~gg~~~G~iv~  897 (1809)
T PRK00635        871 NMHVVKVADYVLELGPEGGNLGGYLLA  897 (1809)
T ss_pred             CHHHHHhCCEEEEEccCCCCCCCEEEE
Confidence            998668999998885      556544

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.60  E-value=1e-14  Score=141.64  Aligned_cols=131  Identities=17%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhh----hhce--------eecCCCCCCccH-HHHHHHHcCCchhhhcccccccHH
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMS----KAGL--------YLPAKNHPRLPW-FDLILADIGDHQSLEQNLSTFSGH  418 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a----~~G~--------~vp~~~~~~l~~-~d~i~~~ig~~~~~~~~~stfS~g  418 (623)
                      .+.+|+||||+|||++|..|.+...-.    ..+.        .-+....+.+.+ |++.+..+- .... ..+  ||+|
T Consensus        23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~-~~~~-~~~--LS~G   98 (178)
T cd03239          23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVL-QGKV-EQI--LSGG   98 (178)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEec-CCcC-ccc--CCHH
Confidence            389999999999999999995432100    0000        000000000000 111110000 1111 112  9999


Q ss_pred             HH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          419 IS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       419 ~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      ++ ++.++++++    .+|+++|+|||++|+|+.....+... +..+.+.+.++|++||+.+....+++++.+.
T Consensus        99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~-L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~  171 (178)
T cd03239          99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDM-IKEMAKHTSQFIVITLKKEMFENADKLIGVL  171 (178)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEECCHHHHhhCCeEEEEE
Confidence            99 788887764    78999999999999999999999985 4455555789999999998777888877664

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.59  E-value=8.5e-15  Score=162.81  Aligned_cols=159  Identities=20%  Similarity=0.204  Sum_probs=120.5

Q ss_pred             CcEEEceeeeecCCccc---cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--------hh-hceeecCCCCCC-
Q 006974          325 SEMTVGSLSKGISDFPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--------SK-AGLYLPAKNHPR-  391 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v---~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--------a~-~G~~vp~~~~~~-  391 (623)
                      ..+.++|++..-++..+   +.+|.+++| +-+.|+||||+|||||+|+|+-+-+.        +. .-.|+||.++.. 
T Consensus       391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~  469 (604)
T COG4178         391 HGITLENLSLRTPDGQTLLSELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQ  469 (604)
T ss_pred             ceeEEeeeeEECCCCCeeeccceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCC
Confidence            56889999988865333   999999999 89999999999999999999433221        11 236778775311 


Q ss_pred             ---------------cc--HHHHHHHHcCCchhhhc------ccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          392 ---------------LP--WFDLILADIGDHQSLEQ------NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       392 ---------------l~--~~d~i~~~ig~~~~~~~------~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                                     ++  -+.+++..+|+++..++      =-..||+|++ |+++|+.+.++|++++|||-|+++|+.
T Consensus       470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~  549 (604)
T COG4178         470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE  549 (604)
T ss_pred             ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence                           11  13356667777654332      1347999998 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      ....+.+.+.+.+-  ++|+|-++|-..+..+.++...+
T Consensus       550 ~e~~l~q~l~~~lp--~~tvISV~Hr~tl~~~h~~~l~l  586 (604)
T COG4178         550 TEDRLYQLLKEELP--DATVISVGHRPTLWNFHSRQLEL  586 (604)
T ss_pred             HHHHHHHHHHhhCC--CCEEEEeccchhhHHHHhhheee
Confidence            99999996665433  68999999998888776665443

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=5.7e-15  Score=147.44  Aligned_cols=81  Identities=17%  Similarity=0.124  Sum_probs=59.5

Q ss_pred             hhcccccccHHHHHHHHHHH-----hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEcCchh-HHhh
Q 006974          408 LEQNLSTFSGHISRIVDILE-----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-V-GLAVVTTHYAD-LSCL  479 (623)
Q Consensus       408 ~~~~~stfS~g~~rl~~~~~-----l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~-~~vii~TH~~~-l~~~  479 (623)
                      ....+.+||+||+++..++.     ++.+|+++|+|||++|+|+.....+...+.+ +.+. + .++|++||++. ...+
T Consensus       120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~-~~~~~g~~~viiith~~~~~~~~  198 (213)
T cd03277         120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE-TACKEGTSQYFLITPKLLPGLNY  198 (213)
T ss_pred             cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH-HhhcCCCceEEEEchhhccCCcc
Confidence            45677899999996544432     3689999999999999999999999985555 4444 4 47999999964 5556


Q ss_pred             ccc--cceeeCc
Q 006974          480 KDK--DTRFENA  489 (623)
Q Consensus       480 ~~~--~~~i~~g  489 (623)
                      +++  +..+.+|
T Consensus       199 ~~~~~v~~l~~g  210 (213)
T cd03277         199 HEKMTVLCVYNG  210 (213)
T ss_pred             cCceEEEEEecC
Confidence            553  3344444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=4e-14  Score=169.67  Aligned_cols=167  Identities=16%  Similarity=0.171  Sum_probs=129.2

Q ss_pred             CCcEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-------hh------------hhh
Q 006974          324 NSEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-------SL------------MSK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-------~~------------~a~  379 (623)
                      +|.++++|++.+|...  .|  +++|.+.+| +.+||+|..|||||||+.++ -++       .+            +..
T Consensus      1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~-eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPG-EKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred             CCeEEEEEeEEEeCCCCcchhcCceEEEcCC-ceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence            5789999999999643  44  999999999 99999999999999999998 333       22            112


Q ss_pred             hceeecCCCC-----C--CccHHH--------HHHHHcC-----------CchhhhcccccccHHHHH-HHHHHHhcCCC
Q 006974          380 AGLYLPAKNH-----P--RLPWFD--------LILADIG-----------DHQSLEQNLSTFSGHISR-IVDILELVSRE  432 (623)
Q Consensus       380 ~G~~vp~~~~-----~--~l~~~d--------~i~~~ig-----------~~~~~~~~~stfS~g~~r-l~~~~~l~~~~  432 (623)
                      .-..+||++.     .  .+.+++        ..++..+           ++..+..+-+.||.|+|| ++++++++.++
T Consensus      1215 rlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s 1294 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS 1294 (1381)
T ss_pred             cCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC
Confidence            2247899861     1  112221        2333333           333445566889999995 89999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      ++++|||.|++.|+..-.-|-+.|.+.++  +||||.+-|..+-.--+|++.++++|++..
T Consensus      1295 kILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1295 KILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred             CEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence            99999999999999888777776666665  689999999988777799999999999854

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.54  E-value=4.8e-14  Score=168.99  Aligned_cols=170  Identities=16%  Similarity=0.210  Sum_probs=133.1

Q ss_pred             CCCcEEEceeeeecCC---c-cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCC-
Q 006974          323 ENSEMTVGSLSKGISD---F-PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNH-  389 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~---~-~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~-  389 (623)
                      ++..++++|.+++.+.   . +. ++||++++| +.++|+||-|||||+||.++ |-+....      ..-.|+||.+- 
T Consensus       515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI  593 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI  593 (1381)
T ss_pred             CCceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence            3446889999999864   1 23 999999999 99999999999999999999 6655431      12368998751 


Q ss_pred             --CC------c------cHHHHHHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          390 --PR------L------PWFDLILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       390 --~~------l------~~~d~i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                        .+      +      ..+++++....+..           .+-.+--+||||+| |+++|++.-.+.+++|||-|.+.
T Consensus       594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA  673 (1381)
T KOG0054|consen  594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA  673 (1381)
T ss_pred             hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence              01      1      11444544444333           33455679999999 99999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          444 TDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|...+..|.+.++.-+. +++|+|++||..++..-+|.++.++||++...
T Consensus       674 VDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~  723 (1381)
T KOG0054|consen  674 VDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIVLKDGKIVES  723 (1381)
T ss_pred             hhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence            999999999998885443 36899999999888889999999999998654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.49  E-value=3.9e-14  Score=166.32  Aligned_cols=151  Identities=17%  Similarity=0.244  Sum_probs=115.3

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH------hhhh----h---------hhhhceeecCCCC--CC---------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL------GLAS----L---------MSKAGLYLPAKNH--PR---------  391 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i------gl~~----~---------~a~~G~~vp~~~~--~~---------  391 (623)
                      +|+=-+.+| ..++|+|++||||||||+++      |.+.    +         .++.-.||-|+.-  +.         
T Consensus       809 ~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~f  887 (1391)
T KOG0065|consen  809 NVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRF  887 (1391)
T ss_pred             cCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHH
Confidence            888889999 89999999999999999999      2221    1         1222234444320  01         


Q ss_pred             ---------------ccHHHHHHHHcCCchhhhccccc----ccHHHH-HHHHHHHhcCCC-cEEEEeCCCCCCCHHHHH
Q 006974          392 ---------------LPWFDLILADIGDHQSLEQNLST----FSGHIS-RIVDILELVSRE-SLVLIDEIGSGTDPSEGV  450 (623)
Q Consensus       392 ---------------l~~~d~i~~~ig~~~~~~~~~st----fS~g~~-rl~~~~~l~~~~-~LlLLDEp~~glD~~~~~  450 (623)
                                     ..++++++..+++.+..+.-+..    ||.++| |+.++..++.+| +||+|||||+|||.+...
T Consensus       888 SA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~  967 (1391)
T KOG0065|consen  888 SAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAA  967 (1391)
T ss_pred             HHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHH
Confidence                           12467888888888766665555    999999 788888899999 899999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchh--HHhhccccceeeC-ceEEEe
Q 006974          451 ALATSILQYLRDRVGLAVVTTHYAD--LSCLKDKDTRFEN-AATEFS  494 (623)
Q Consensus       451 ~l~~all~~l~~~~~~vii~TH~~~--l~~~~~~~~~i~~-g~~~~~  494 (623)
                      .+.+ +++.+.+.|.+|++|-|.+.  +-+.-|+...++. |.+++.
T Consensus       968 ~i~~-~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen  968 IVMR-FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred             HHHH-HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence            9999 78889999999999999975  5566677766654 455554

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.48  E-value=2e-13  Score=149.24  Aligned_cols=152  Identities=16%  Similarity=0.195  Sum_probs=117.6

Q ss_pred             ccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhceeecCCCC-----CCccH
Q 006974          341 VPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGLYLPAKNH-----PRLPW  394 (623)
Q Consensus       341 v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~~vp~~~~-----~~l~~  394 (623)
                      -++||++.+| ++++|.|-=|+|+|-+++++ |.-...                    .+-..|+|-+..     ..+++
T Consensus       276 ~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI  354 (500)
T COG1129         276 RDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI  354 (500)
T ss_pred             eCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence            4899999999 99999999999999999999 633211                    111246665431     11111


Q ss_pred             HH--------------------------HHHHHcCC-chhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          395 FD--------------------------LILADIGD-HQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       395 ~d--------------------------~i~~~ig~-~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      .+                          ....+++. ..+.+..+++||||-+ ++.+++-++.+|++|||||||+|.|.
T Consensus       355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV  434 (500)
T COG1129         355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV  434 (500)
T ss_pred             HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence            11                          12223332 2356789999999987 79999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCch-hHHhhccccceeeCceEEEe
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYA-DLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~-~l~~~~~~~~~i~~g~~~~~  494 (623)
                      -....+.. ++..+.++|..||++|-++ |+..+||++.++.+|++.-.
T Consensus       435 GAK~eIy~-li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e  482 (500)
T COG1129         435 GAKAEIYR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE  482 (500)
T ss_pred             chHHHHHH-HHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence            99999999 7888899899988888875 58889999999999988653

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.48  E-value=1.4e-13  Score=144.13  Aligned_cols=147  Identities=22%  Similarity=0.300  Sum_probs=109.4

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC-----------------CCcc---HHHH---
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH-----------------PRLP---WFDL---  397 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~-----------------~~l~---~~d~---  397 (623)
                      +++|.+.+| ++++|+|++|+||||+|+++ |.......- .|.|.+|.                 ..++   +.++   
T Consensus       401 ~vNL~ikpG-dvvaVvGqSGaGKttllRmi~G~~~~~~ee-~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s  478 (593)
T COG2401         401 NLNLEIKPG-DVVAVVGQSGAGKTTLLRMILGAQKGRGEE-KYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS  478 (593)
T ss_pred             ceeeEecCC-CeEEEEecCCCCcchHHHHHHHHhhccccc-ccCCCCCceeccccchhhccCcccccccCchhHHHHHhh
Confidence            999999999 99999999999999999999 443221110 13333331                 2222   2333   


Q ss_pred             ----------HHHHcCCchh--hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 006974          398 ----------ILADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV  464 (623)
Q Consensus       398 ----------i~~~ig~~~~--~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~  464 (623)
                                ++.+.|+.|.  .-+..+.||.|++ |.++|..++..|++++.||++++||+.....++..+-+..++.|
T Consensus       479 ~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g  558 (593)
T COG2401         479 KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG  558 (593)
T ss_pred             ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence                      3444454443  3467899999999 89999999999999999999999999999999998877666779


Q ss_pred             cEEEEEcCchhHH-hh-ccccceeeCce
Q 006974          465 GLAVVTTHYADLS-CL-KDKDTRFENAA  490 (623)
Q Consensus       465 ~~vii~TH~~~l~-~~-~~~~~~i~~g~  490 (623)
                      .|++++||..++. .+ -|..+.+.-|.
T Consensus       559 iTlivvThrpEv~~AL~PD~li~vgYg~  586 (593)
T COG2401         559 ITLIVVTHRPEVGNALRPDTLILVGYGK  586 (593)
T ss_pred             CeEEEEecCHHHHhccCCceeEEeeccc
Confidence            9999999999965 45 34444444443

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=2.6e-13  Score=142.88  Aligned_cols=167  Identities=15%  Similarity=0.157  Sum_probs=122.3

Q ss_pred             CCcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH--------hhhhh------------hhhh
Q 006974          324 NSEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--------GLASL------------MSKA  380 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--------gl~~~------------~a~~  380 (623)
                      .|.+.+.+|++.|+. +++  +++|.++.| +.++|+||.|+||||+++.+        |-+.+            +.++
T Consensus       260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g-~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a  338 (497)
T COG5265         260 LGAVAFINVSFAYDPRRPILNGISFTIPLG-KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA  338 (497)
T ss_pred             cceEEEEEEEeeccccchhhcCccccccCc-cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence            356889999999964 444  999999999 99999999999999999998        33322            2234


Q ss_pred             ceeecCCCCCCccH--HH------------HH---------HHHcC-Cchhhh----cccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPRLPW--FD------------LI---------LADIG-DHQSLE----QNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~l~~--~d------------~i---------~~~ig-~~~~~~----~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ...||++. +.+.-  +-            .+         ...+. ..+-.+    ..--.+|||+| |++.++.+..+
T Consensus       339 Ig~VPQDt-vLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~  417 (497)
T COG5265         339 IGIVPQDT-VLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN  417 (497)
T ss_pred             hCcCcccc-eehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence            45788874 22211  00            00         00000 111111    22236899999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++++||.|+.||...-.+|..++-+ +. .|.|.+++-|.+.--.-+|.+++++||.+...
T Consensus       418 p~il~~deatsaldt~te~~iq~~l~~-~~-~~rttlviahrlsti~~adeiivl~~g~i~er  478 (497)
T COG5265         418 PPILILDEATSALDTHTEQAIQAALRE-VS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVER  478 (497)
T ss_pred             CCEEEEehhhhHhhhhHHHHHHHHHHH-Hh-CCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence            999999999999999999998875443 44 47899999999876667899999999988654

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.46  E-value=5.7e-13  Score=144.89  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=118.6

Q ss_pred             CCcEEEceeeeecCC-ccc---cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--------h----hhceeecCC
Q 006974          324 NSEMTVGSLSKGISD-FPV---PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLM--------S----KAGLYLPAK  387 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~-~~v---~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--------a----~~G~~vp~~  387 (623)
                      +..+++++|+..-++ ..+   +++|.++.| +-+.|+||||+|||.|||.+|-+-+.        .    +.-.|+||.
T Consensus       431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr  509 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR  509 (659)
T ss_pred             cceEEeeeeeecCCCCCceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence            357889999988754 333   799999999 89999999999999999999555431        1    224689998


Q ss_pred             CCCCccH-----------------------H---------HHHHHHcCCch--hhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          388 NHPRLPW-----------------------F---------DLILADIGDHQ--SLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       388 ~~~~l~~-----------------------~---------d~i~~~ig~~~--~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      +...++-                       +         .+++.+.|--|  ....=..+||+|++ |++.|+-+..+|
T Consensus       510 PYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kP  589 (659)
T KOG0060|consen  510 PYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKP  589 (659)
T ss_pred             CCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCC
Confidence            7432211                       1         12344444222  33344579999988 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      .+.||||-|+.+|..--.++...    .++.|.|.|-++|...+..+-+....+.
T Consensus       590 k~AiLDE~TSAv~~dvE~~~Yr~----~r~~giT~iSVgHRkSL~kfHd~~L~~~  640 (659)
T KOG0060|consen  590 KFAILDECTSAVTEDVEGALYRK----CREMGITFISVGHRKSLWKFHDYVLRMD  640 (659)
T ss_pred             ceEEeechhhhccHHHHHHHHHH----HHHcCCeEEEeccHHHHHhhhhEEEEec
Confidence            99999999999999888777773    3445899999999988888766655553

>PF05192 MutS_III: MutS domain III C-terminus

Probab=99.45  E-value=4.4e-13  Score=131.84  Aligned_cols=169  Identities=28%  Similarity=0.308  Sum_probs=130.5

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH--HH-hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA--MM-QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~--~~-~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      ||+++|++|.+.|.++.++|+.|++.++++..  .+ .....++++++|+++++.++..|+. ++.++..+..++..+.+
T Consensus        33 ~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~~l~~l~~~~~-~~~~~~~l~~~l~~~~~  111 (204)
T PF05192_consen   33 MGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKIPDIERILKRLRSGRA-SPQDLLKLYKTLRSIIE  111 (204)
T ss_dssp             HHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999986  22 3556788999999999999988876 89999999999999999


Q ss_pred             HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccCCCcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCKLLIILDRASEDLELIRAERKRNMENLDSLLKKVA  157 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~~~~I~d~as~~L~~iR~~~~~~~~~l~~~l~~~~  157 (623)
                      +.+++....       ...+.|..+...+++++.+.+.|.++||++.. ..+..+                         
T Consensus       112 i~~~~~~~~-------~~~~~L~~l~~~l~~~~~l~~~i~~~id~~~~-~~~~~~-------------------------  158 (204)
T PF05192_consen  112 IKKLLSERL-------ESSPLLRKLLSSLPDFSELLDEIESTIDEDKS-LAIREQ-------------------------  158 (204)
T ss_dssp             HHHHHHCTS-------SSTHHHHHHHHHHCSHHHHHHHHHHHBHTS-C-CHCTTS-------------------------
T ss_pred             HHHHHHhhc-------ccHHHHHHHHHhcccHHHHHHHHHHHHhcCcH-HHHhcc-------------------------
Confidence            988754321       11245767777776777888888888876411 000000                         


Q ss_pred             HHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHHHHHHH
Q 006974          158 AQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAILSLL  237 (623)
Q Consensus       158 ~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~il~~L  237 (623)
                                 .+|  +.                                                  +..++.+|+.+|
T Consensus       159 -----------~~I--~~--------------------------------------------------~~~~~~~i~~~L  175 (204)
T PF05192_consen  159 -----------DII--RD--------------------------------------------------INDEEQRILREL  175 (204)
T ss_dssp             -----------SSB--ST--------------------------------------------------HHHHHHHHHHHH
T ss_pred             -----------cHH--HH--------------------------------------------------HHHHHHHHHHHH
Confidence                       000  00                                                  567788999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006974          238 TAEIAKSEREIKYLMDRVLEIDLAFARAG  266 (623)
Q Consensus       238 ~~~i~~~~~~l~~~~~~~~~lD~~~a~a~  266 (623)
                      ++.|.++.+.|..+++.+++|||++|+|+
T Consensus       176 ~~~i~~~~~~l~~~~~~i~eLD~l~s~A~  204 (204)
T PF05192_consen  176 TNEIRKYSPELRELSEAIAELDVLISFAK  204 (204)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999985

; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.44  E-value=6.6e-13  Score=137.83  Aligned_cols=75  Identities=19%  Similarity=0.231  Sum_probs=61.9

Q ss_pred             ccccHHHH-HHHHHHHh--cC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          413 STFSGHIS-RIVDILEL--VS--RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       413 stfS~g~~-rl~~~~~l--~~--~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      .+||+|++ ++++++..  +.  +|+++|+|||++|+|+.....+...+. .+.+ +.++|++||+..+..+|++.+.+.
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~-~~~~-~~tii~isH~~~~~~~~d~~~~l~  246 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLK-ELSR-SHQVLCITHLPQVAAMADNHFLVE  246 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHH-HHhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence            35899999 67777653  33  999999999999999999999999554 4444 679999999998888999888876


Q ss_pred             Cc
Q 006974          488 NA  489 (623)
Q Consensus       488 ~g  489 (623)
                      ++
T Consensus       247 ~~  248 (276)
T cd03241         247 KE  248 (276)
T ss_pred             Ee
Confidence            65

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.38  E-value=2.9e-12  Score=144.07  Aligned_cols=87  Identities=26%  Similarity=0.275  Sum_probs=73.8

Q ss_pred             HHHcCCc-hhhhcccccccHHHH-HHHHHHHh---cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          399 LADIGDH-QSLEQNLSTFSGHIS-RIVDILEL---VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       399 ~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l---~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      +.++|++ =.+-++..|||||+- |+++|..+   .+...|+||||||+||-+.+...|.. ++..|.+.|.|||++.|+
T Consensus       806 L~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLvd~GnTViVIEHN  884 (935)
T COG0178         806 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLVDKGNTVIVIEHN  884 (935)
T ss_pred             HHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecc
Confidence            4455654 245678999999998 89999775   45669999999999999999999999 888899999999999999


Q ss_pred             hhHHhhcccccee
Q 006974          474 ADLSCLKDKDTRF  486 (623)
Q Consensus       474 ~~l~~~~~~~~~i  486 (623)
                      +++-..||+++.+
T Consensus       885 LdVIk~AD~IIDL  897 (935)
T COG0178         885 LDVIKTADWIIDL  897 (935)
T ss_pred             cceEeecCEEEEc
Confidence            9988888877655

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.37  E-value=3.8e-12  Score=156.65  Aligned_cols=89  Identities=27%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             HHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      +.++|++- .+.++..|||||+. |++++..+..+   +.|+||||||+||++.+...|.. +++.|.+.|.|||++.|+
T Consensus      1683 L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~~~g~tvivieH~ 1761 (1809)
T PRK00635       1683 LIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLVSLGHSVIYIDHD 1761 (1809)
T ss_pred             HHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeCC
Confidence            44556542 45688999999998 89999887654   78999999999999999999999 678899999999999999


Q ss_pred             hhHHhhccccceeeC
Q 006974          474 ADLSCLKDKDTRFEN  488 (623)
Q Consensus       474 ~~l~~~~~~~~~i~~  488 (623)
                      .++...||.++.+..
T Consensus      1762 ~~~i~~aD~iidlgp 1776 (1809)
T PRK00635       1762 PALLKQADYLIEMGP 1776 (1809)
T ss_pred             HHHHHhCCEEEEcCC
Confidence            998878998877644

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.35  E-value=1.1e-11  Score=133.48  Aligned_cols=155  Identities=17%  Similarity=0.124  Sum_probs=110.1

Q ss_pred             EEEceeeeecCCc--cc-cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhh---------hhhhceeecCCCCCCccH
Q 006974          327 MTVGSLSKGISDF--PV-PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL---------MSKAGLYLPAKNHPRLPW  394 (623)
Q Consensus       327 l~~~~l~~~y~~~--~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~---------~a~~G~~vp~~~~~~l~~  394 (623)
                      |.++||..--+..  .| .++|.+++| .-+.||||||||||.|+|++|-+.+         ..+..+|+||.+....+-
T Consensus       482 I~lenIpvItP~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt  560 (728)
T KOG0064|consen  482 IILENIPVITPAGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT  560 (728)
T ss_pred             eEEecCceeccCcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence            5667776655332  23 899999999 8899999999999999999954432         223457888876432221


Q ss_pred             -----------------------HHHHHHHcCCc---------hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          395 -----------------------FDLILADIGDH---------QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       395 -----------------------~d~i~~~ig~~---------~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                                             ...|+..+.++         +-+..=-..||||++ |+..|+.+-++|...+|||-|
T Consensus       561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT  640 (728)
T KOG0064|consen  561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT  640 (728)
T ss_pred             ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence                                   11222222221         111122346899999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      +...+.-...+.++...+    |.+.|-+||...+-.+-.+...+
T Consensus       641 sAvsidvE~~i~~~ak~~----gi~llsithrpslwk~h~~ll~~  681 (728)
T KOG0064|consen  641 SAVSIDVEGKIFQAAKDA----GISLLSITHRPSLWKYHTHLLEF  681 (728)
T ss_pred             cccccchHHHHHHHHHhc----CceEEEeecCccHHHHHHHHHhc
Confidence            999998888887754444    88999999999887776655544

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.32  E-value=4e-12  Score=122.74  Aligned_cols=146  Identities=15%  Similarity=0.261  Sum_probs=108.7

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---------------------------hhhhhceeecCCCCCCc-
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------------------------LMSKAGLYLPAKNHPRL-  392 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---------------------------~~a~~G~~vp~~~~~~l-  392 (623)
                      .+++++..| ++.+++|.+|||||-..|.| |...                           +.++..+.+++++..-+ 
T Consensus        25 ~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLD  103 (330)
T COG4170          25 RVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLD  103 (330)
T ss_pred             eeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcC
Confidence            899999999 99999999999999999999 5542                           01222233344331111 


Q ss_pred             -------------c-------HH----------HHHHHHcCCch---hhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          393 -------------P-------WF----------DLILADIGDHQ---SLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       393 -------------~-------~~----------d~i~~~ig~~~---~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                                   |       ++          -.++.++|+.|   -....+..+.-|+- ++.+|.++++.|.|+|.|
T Consensus       104 PS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIAD  183 (330)
T COG4170         104 PSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD  183 (330)
T ss_pred             hHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEecc
Confidence                         1       01          12466777654   45567778887776 788899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCc
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENA  489 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g  489 (623)
                      |||+.++|.....+.. ++..+.+. |.++++++||+. +...||++.++--|
T Consensus       184 EPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG  235 (330)
T COG4170         184 EPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG  235 (330)
T ss_pred             CCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence            9999999999999999 66666654 668899999987 78899988765444

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.22  E-value=8.1e-11  Score=117.73  Aligned_cols=71  Identities=21%  Similarity=0.222  Sum_probs=50.1

Q ss_pred             cccHHHH-HHHHHHH----hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974          414 TFSGHIS-RIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       414 tfS~g~~-rl~~~~~----l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      .||||++ .+++++.    ...+.+++|||||.++||+.....++. ++..+.+ ..-+|++||...+...++..+.+
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v  211 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK-QSQFIITTHNPEMFEDADKLIGV  211 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccc
Confidence            9999999 5555533    346788999999999999999999998 4444543 36799999999988888876654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.19  E-value=4.6e-11  Score=123.65  Aligned_cols=75  Identities=24%  Similarity=0.206  Sum_probs=53.6

Q ss_pred             cccccHHHH-HHHHHHHhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc-hhHHhhc
Q 006974          412 LSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY-ADLSCLK  480 (623)
Q Consensus       412 ~stfS~g~~-rl~~~~~l~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~-~~l~~~~  480 (623)
                      .+.+|+|++ ++.+++.++         .+|+++|+|||+++||+.....+...+.+    .+. ++++||+ ..+..+|
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~----~~q-~ii~~~~~~~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG----RVQ-TFVTTTDLADFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc----CCC-EEEEeCCchhccchh
Confidence            456799999 577776653         79999999999999999999988774433    233 4555554 4566666


Q ss_pred             ---cccceeeCceE
Q 006974          481 ---DKDTRFENAAT  491 (623)
Q Consensus       481 ---~~~~~i~~g~~  491 (623)
                         .+++.+.+|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               45566666654

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.14  E-value=2.4e-10  Score=109.00  Aligned_cols=68  Identities=22%  Similarity=0.259  Sum_probs=59.2

Q ss_pred             ccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       411 ~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      .+..-|-|+-=+.++..-.++.-+.|||||-++|.|.-+.++.. ++..+.+.|+-+||+||..-+..+
T Consensus       126 sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella-~l~~la~sGaQ~IiATHSPiLlAi  193 (233)
T COG3910         126 SLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLA-ILRDLADSGAQIIIATHSPILLAI  193 (233)
T ss_pred             chhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHH-HHHHHHhcCCeEEEEecChhheeC
Confidence            46677888888888888889999999999999999999999988 888899999999999999765443

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.13  E-value=1.5e-10  Score=136.77  Aligned_cols=95  Identities=24%  Similarity=0.214  Sum_probs=81.8

Q ss_pred             HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       399 ~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +..+|+... +++.+++|||||+ |+.++.+++.+|  .++||||||+||||.+...|.. ++..+.+.|.|||++||+.
T Consensus       471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L~~~G~TVIvVeHd~  549 (924)
T TIGR00630       471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRLRDLGNTVIVVEHDE  549 (924)
T ss_pred             HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCH
Confidence            456677643 6899999999999 799999988875  8999999999999999999999 6666888899999999999


Q ss_pred             hHHhhcccccee------eCceEEEe
Q 006974          475 DLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       475 ~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      ++...||+++.+      .+|.+.+.
T Consensus       550 ~~i~~aD~vi~LgpgaG~~~G~Iv~~  575 (924)
T TIGR00630       550 ETIRAADYVIDIGPGAGIHGGEVVAS  575 (924)
T ss_pred             HHHhhCCEEEEecccccCCCCEEeec
Confidence            866799999999      77877654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.10  E-value=2.1e-10  Score=135.88  Aligned_cols=95  Identities=25%  Similarity=0.216  Sum_probs=82.0

Q ss_pred             HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       399 ~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +..+|+... +++.+.+|||||+ |+.++.+++.+|  .++||||||+||||.+...|.. ++..+++.|.|||++||+.
T Consensus       473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L~~~G~TVIvVeH~~  551 (943)
T PRK00349        473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHLRDLGNTLIVVEHDE  551 (943)
T ss_pred             hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCH
Confidence            556677654 7899999999999 799999988886  8999999999999999999999 6666888899999999999


Q ss_pred             hHHhhcccccee------eCceEEEe
Q 006974          475 DLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       475 ~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      +....||++..+      .+|++.+.
T Consensus       552 ~~i~~aD~vi~LgpgaG~~~G~iv~~  577 (943)
T PRK00349        552 DTIRAADYIVDIGPGAGVHGGEVVAS  577 (943)
T ss_pred             HHHHhCCEEEEeccccCCCCCEEeec
Confidence            866679999999      77787654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.09  E-value=5.8e-10  Score=120.30  Aligned_cols=169  Identities=19%  Similarity=0.253  Sum_probs=130.0

Q ss_pred             CCCcEEEceeeeecCC--ccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------h-------------
Q 006974          323 ENSEMTVGSLSKGISD--FPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------S-------------  378 (623)
Q Consensus       323 g~~~l~~~~l~~~y~~--~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a-------------  378 (623)
                      |..++++++|+..-..  ..+ ++||++..| ++++|.|-.|-|-+.|+..| |+-.+-       .             
T Consensus       254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r  332 (501)
T COG3845         254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR  332 (501)
T ss_pred             CCeEEEEeeeEeecCCCCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence            4667899999887643  234 999999999 99999999999999999999 665311       0             


Q ss_pred             hhc-eeecCCCC-----CCccHHHH----------------------------HHHHcCCc-hhhhcccccccHHHH-HH
Q 006974          379 KAG-LYLPAKNH-----PRLPWFDL----------------------------ILADIGDH-QSLEQNLSTFSGHIS-RI  422 (623)
Q Consensus       379 ~~G-~~vp~~~~-----~~l~~~d~----------------------------i~~~ig~~-~~~~~~~stfS~g~~-rl  422 (623)
                      ..| .|+|.+..     ..++.+++                            +...++.. .+...+..+||||.+ ++
T Consensus       333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~  412 (501)
T COG3845         333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL  412 (501)
T ss_pred             hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence            111 36666531     12222222                            23333332 345567899999987 79


Q ss_pred             HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEE
Q 006974          423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEF  493 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~  493 (623)
                      .+++.+..+|+|||+..||.|+|......+...+++ .++.|+.|+++|-+++ +..+||++.++.+|.+.-
T Consensus       413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~  483 (501)
T COG3845         413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG  483 (501)
T ss_pred             hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence            999999999999999999999999999999997776 6777899999999976 889999999999998753

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.09  E-value=2.5e-10  Score=120.41  Aligned_cols=146  Identities=21%  Similarity=0.276  Sum_probs=104.5

Q ss_pred             cccccccCC----ceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCCCcc-----------------
Q 006974          342 PIDIKVECE----TRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHPRLP-----------------  393 (623)
Q Consensus       342 ~i~l~l~~g----~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~~l~-----------------  393 (623)
                      +..+.+..|    .++++.+|.||.|||||++++ |.+.+...      ..+|-|+.-.....                 
T Consensus       354 ~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~  433 (592)
T KOG0063|consen  354 DFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMH  433 (592)
T ss_pred             eEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcC
Confidence            444444433    389999999999999999999 33322211      11233332111100                 


Q ss_pred             --HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974          394 --WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT  470 (623)
Q Consensus       394 --~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~  470 (623)
                        ++.+++.-+..++-+++.+.+||||+. |+++++.+-.+.++.++|||.+-+|.+.+...+.-+.+++...+.|.+++
T Consensus       434 pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvV  513 (592)
T KOG0063|consen  434 PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVV  513 (592)
T ss_pred             HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhh
Confidence              122334444567788899999999988 89999999999999999999999999999988887777777777899999


Q ss_pred             cCchhHHh-hccccceee
Q 006974          471 THYADLSC-LKDKDTRFE  487 (623)
Q Consensus       471 TH~~~l~~-~~~~~~~i~  487 (623)
                      .||.-++. ++|+++++.
T Consensus       514 EhdfImaTYladrvivf~  531 (592)
T KOG0063|consen  514 EHDFIMATYLADRVIVFE  531 (592)
T ss_pred             hhHHHHHHhhcceeEEEe
Confidence            99987664 577766554

>PRK13695 putative NTPase; Provisional

Probab=99.00  E-value=6.4e-10  Score=107.39  Aligned_cols=134  Identities=19%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH-hhhhhhh-hhceeecCCC---CCCc--cH---H---HHHHHHcCC--chhhhcccccccH
Q 006974          353 VVVITGPNTGGKTASMKTL-GLASLMS-KAGLYLPAKN---HPRL--PW---F---DLILADIGD--HQSLEQNLSTFSG  417 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a-~~G~~vp~~~---~~~l--~~---~---d~i~~~ig~--~~~~~~~~stfS~  417 (623)
                      .++|+|+||+|||||++.+ +.+.... ..+.++.+..   ....  ..   .   ...+...+.  .+...+....+|+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg   81 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED   81 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence            4789999999999999997 2221100 0111222110   0000  00   0   011222221  2223455667888


Q ss_pred             HHH-HHHHHHHhcCCCcEEEEeCCC--CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceE
Q 006974          418 HIS-RIVDILELVSRESLVLIDEIG--SGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAAT  491 (623)
Q Consensus       418 g~~-rl~~~~~l~~~~~LlLLDEp~--~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~  491 (623)
                      .++ ....+.....+|+++++|||+  .++++.....+..     +.+.+.++|+|+|+..+..+++++....++.+
T Consensus        82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~-----~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i  153 (174)
T PRK13695         82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEE-----VLDSEKPVIATLHRRSVHPFVQEIKSRPGGRV  153 (174)
T ss_pred             HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHH-----HHhCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence            887 566666677899999999964  3555544444433     22458899999999777788888888877765

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.99  E-value=1.9e-09  Score=111.24  Aligned_cols=112  Identities=21%  Similarity=0.231  Sum_probs=64.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC-----CccHHH---HHHHHc-CCch-hhhcccccccHHHH-
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFD---LILADI-GDHQ-SLEQNLSTFSGHIS-  420 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~-----~l~~~d---~i~~~i-g~~~-~~~~~~stfS~g~~-  420 (623)
                      .-++|+||||+|||||++++        +|.+.|..+..     .+..++   .+...+ +..+ .+....+.+-+-.+ 
T Consensus       112 ~~~~i~g~~g~GKttl~~~l--------~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~  183 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDL--------ARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA  183 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHH--------hCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence            46899999999999999999        66555554321     122122   222111 1111 11222222332222 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      .-..++..+.+|+++|+|||++.       ....++++.+. .|.++|+|||+..+..+
T Consensus       184 ~~~~~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~vI~ttH~~~~~~~  234 (270)
T TIGR02858       184 EGMMMLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVSIIATAHGRDVEDL  234 (270)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCEEEEEechhHHHHH
Confidence            11222334579999999999742       22333555554 58899999998766444

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.90  E-value=1.2e-08  Score=103.28  Aligned_cols=134  Identities=13%  Similarity=0.229  Sum_probs=77.3

Q ss_pred             EEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHH-HHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCc
Q 006974          328 TVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTAS-MKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH  405 (623)
Q Consensus       328 ~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTl-Lk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~  405 (623)
                      .++++.+.+++       -+++| .+++|+||||+||||| ++.+ +++. ....+.|+..+. ..-.+..++ ..+|..
T Consensus         9 ~~~~ld~~l~g-------gi~~g-~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~-~~~~~~~~~-~~~g~~   77 (230)
T PRK08533          9 SRDELHKRLGG-------GIPAG-SLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQL-TTTEFIKQM-MSLGYD   77 (230)
T ss_pred             EEeeeehhhCC-------CCCCC-cEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCC-CHHHHHHHH-HHhCCc
Confidence            34555555543       36778 8999999999999999 4555 3322 233445666543 222222222 344431


Q ss_pred             --hhhhc------c-cccccHHHH---HHHHHHHh--cCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEE
Q 006974          406 --QSLEQ------N-LSTFSGHIS---RIVDILEL--VSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGLA  467 (623)
Q Consensus       406 --~~~~~------~-~stfS~g~~---rl~~~~~l--~~~~~LlLLDEp~~gl----D~~~~~~l~~all~~l~~~~~~v  467 (623)
                        +....      . ...+|+...   .+..++..  ..+|+++++|||++++    |+.....+.. ++..+.+.|.++
T Consensus        78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~-~l~~l~~~g~tv  156 (230)
T PRK08533         78 INKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA-FFKRISSLNKVI  156 (230)
T ss_pred             hHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH-HHHHHHhCCCEE
Confidence              11110      0 012344322   23333332  3579999999999999    7777777766 666677777765


Q ss_pred             EEEcCch
Q 006974          468 VVTTHYA  474 (623)
Q Consensus       468 ii~TH~~  474 (623)
                      ++ ||+.
T Consensus       157 i~-t~~~  162 (230)
T PRK08533        157 IL-TANP  162 (230)
T ss_pred             EE-Eecc
Confidence            55 5553

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.88  E-value=5.8e-09  Score=101.17  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCC----------chhhhcccccccHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGD----------HQSLEQNLSTFSGHISR  421 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~----------~~~~~~~~stfS~g~~r  421 (623)
                      +++|.||.|+|||||.-.+..-.. ....+.|+..+.  ...-+.+.+..+|.          ....+..+..+|+++.+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~--~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~   78 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE--SPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS   78 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC--CHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhh
Confidence            368999999999999888733222 223345554432  11112222233332          23345566778888765


Q ss_pred             -----HHHHHH--hcCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          422 -----IVDILE--LVSRESLVLIDEIGSGTD---PSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       422 -----l~~~~~--l~~~~~LlLLDEp~~glD---~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                           +..+..  ...+|+++++|||+..+|   +.....+.. ++..+++.|.++|+++|...
T Consensus        79 ~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~-l~~~l~~~g~tvi~v~~~~~  141 (187)
T cd01124          79 LRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR-LLFALKRFGVTTLLTSEQSG  141 (187)
T ss_pred             hhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH-HHHHHHHCCCEEEEEecccc
Confidence                 222222  356899999999999999   666666666 67778888999999999865

A related protein is found in archaea.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.81  E-value=9e-09  Score=102.44  Aligned_cols=65  Identities=29%  Similarity=0.315  Sum_probs=46.0

Q ss_pred             ccccccHHHHHH-HHHHHhcC--CC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974          411 NLSTFSGHISRI-VDILELVS--RE-SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL  476 (623)
Q Consensus       411 ~~stfS~g~~rl-~~~~~l~~--~~-~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l  476 (623)
                      +.+.+|.|++++ .++..+..  .. .++++|||-+||.|.....+.. ++..+...+.-+|+|||...+
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~QviitTHSp~i  301 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQVIITTHSPFI  301 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSEEEEEES-GGG
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCEEEEeCccchh
Confidence            355669999976 44444333  33 9999999999999999999987 445555556789999999764

>TIGR00634 recN DNA repair protein RecN

Probab=98.72  E-value=5.5e-08  Score=110.90  Aligned_cols=115  Identities=19%  Similarity=0.249  Sum_probs=83.3

Q ss_pred             ccccHHHH-HHHHHHHhcCC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          413 STFSGHIS-RIVDILELVSR----ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       413 stfS~g~~-rl~~~~~l~~~----~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      ..+|||++ |+.++++++..    |+++|+|||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+.
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~  516 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQVLCVTHLPQVAAHADAHFKVE  516 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEEChHHHHHhcCeEEEEE
Confidence            57999999 89999887654    69999999999999999999999 5555664 789999999999888999998887


Q ss_pred             CceEEEecCccccccccccCCCCCcHHHHHHHHCC---CCHHHHHHHHHHH
Q 006974          488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSIG---FDRKIIQRAQKLV  535 (623)
Q Consensus       488 ~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g---~~~~i~~~a~~~~  535 (623)
                      ++..  +..+......    ..+..--.+||+++|   +.+..+..|++.+
T Consensus       517 k~~~--~~~t~s~i~~----L~~~~r~~EiArml~G~~~t~~~~~~A~~ll  561 (563)
T TIGR00634       517 KEGL--DGRTATRVRP----LSGEERVAELARMLAGLEKSDLTLAHAQELL  561 (563)
T ss_pred             EccC--CCcEEEEEEE----CCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            6531  1111111111    123445568999985   2455566666654

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.70  E-value=4.4e-08  Score=116.27  Aligned_cols=152  Identities=21%  Similarity=0.238  Sum_probs=114.3

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------h-hhceeecCCCCCCcc--------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------S-KAGLYLPAKNHPRLP--------  393 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a-~~G~~vp~~~~~~l~--------  393 (623)
                      |++.-+++| +++.+.||.|||||||||.+ |-..-+                  . +.-.|.++.. ..++        
T Consensus       133 ~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~D-vH~p~lTVreTl  210 (1391)
T KOG0065|consen  133 DISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQD-VHFPELTVRETL  210 (1391)
T ss_pred             CcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccc-cccceeEEeehh
Confidence            899999999 99999999999999999999 322110                  0 1112333322 1111        


Q ss_pred             ------------------------HHHHHHHHcCCchhhh-----cccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          394 ------------------------WFDLILADIGDHQSLE-----QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       394 ------------------------~~d~i~~~ig~~~~~~-----~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                                              ..|.++..+|+..-.+     ....-.|||+| |+..+-.++.+++++.+||+|+|
T Consensus       211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~G  290 (1391)
T KOG0065|consen  211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRG  290 (1391)
T ss_pred             hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccc
Confidence                                    2345677778765443     34567899999 88888889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCch--hHHhhccccceeeCceEEEec
Q 006974          444 TDPSEGVALATSILQYLRDRVGLAVVTTHYA--DLSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~--~l~~~~~~~~~i~~g~~~~~~  495 (623)
                      ||....-.+..++....+..+.|++++-|..  +.-.+-|.+..+.+|...+..
T Consensus       291 LDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G  344 (1391)
T KOG0065|consen  291 LDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQG  344 (1391)
T ss_pred             ccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEec
Confidence            9999999999976665555678888888885  356788899999999988763

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.70  E-value=8.7e-08  Score=89.74  Aligned_cols=121  Identities=14%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHH--HHHcCCchhh---hcccccccHHH-HHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLI--LADIGDHQSL---EQNLSTFSGHI-SRIVDI  425 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i--~~~ig~~~~~---~~~~stfS~g~-~rl~~~  425 (623)
                      +++|+||||+||||+++.+ +..........|+..... .-......  +...+..+..   .......+.+. .+....
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE-IEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER   79 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc-hHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence            3689999999999999999 333222222334444331 11111111  1111111111   11111222222 245556


Q ss_pred             HHhcCCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          426 LELVSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~gl----------D~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .....++.++++|||++-+          +......+.. +.....+.+.++|+++|...
T Consensus        80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~vv~~~~~~~  138 (165)
T cd01120          80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE-LLERARKGGVTVIFTLQVPS  138 (165)
T ss_pred             HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH-HHHHHhcCCceEEEEEecCC
Confidence            6677899999999999544          4443455544 77777777899999999864

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.69  E-value=5.3e-08  Score=103.23  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH
Q 006974          399 LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS  477 (623)
Q Consensus       399 ~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~  477 (623)
                      ...+.+...+++.+..+|||+- |.++|+..+...++.++|||.+-||...+...+. .+..+..-..-+|++.||+.+.
T Consensus       198 ~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-~IRsl~~p~~YiIVVEHDLsVL  276 (592)
T KOG0063|consen  198 CDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-TIRSLINPDRYIIVVEHDLSVL  276 (592)
T ss_pred             HHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-HHHHhhCCCCeEEEEEeechHH
Confidence            3344455667888999999887 8899999999999999999999999999999888 5556666678899999999865


Q ss_pred             hh
Q 006974          478 CL  479 (623)
Q Consensus       478 ~~  479 (623)
                      .+
T Consensus       277 Dy  278 (592)
T KOG0063|consen  277 DY  278 (592)
T ss_pred             Hh
Confidence            53

>PRK10869 recombination and repair protein; Provisional

Probab=98.67  E-value=1.3e-07  Score=107.35  Aligned_cols=114  Identities=15%  Similarity=0.211  Sum_probs=82.8

Q ss_pred             cccHHHH-HHHHHHHhcC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeC
Q 006974          414 TFSGHIS-RIVDILELVS----RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFEN  488 (623)
Q Consensus       414 tfS~g~~-rl~~~~~l~~----~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~  488 (623)
                      .+|||++ |+++++.++.    +|+++|+|||++|+|+.....+.. ++..+.+ +.+||++||++.+..+|++++.+..
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k  507 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSK  507 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHHhCCEEEEEec
Confidence            7899999 8999988764    689999999999999999999999 5556654 5899999999998899998888765


Q ss_pred             ceEEEecCccccccccccCCCCCcHHHHHHHHCCC---CHHHHHHHHHHH
Q 006974          489 AATEFSLETLRPTYRILWGSTGDSNALNIAKSIGF---DRKIIQRAQKLV  535 (623)
Q Consensus       489 g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~---~~~i~~~a~~~~  535 (623)
                      +..  ...    +|.-..-..+..--.+||+++|-   .+..+..|++.+
T Consensus       508 ~~~--~~~----t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl  551 (553)
T PRK10869        508 ETD--GGM----TETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELL  551 (553)
T ss_pred             ccc--CCe----eeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence            421  100    11111111234456789999852   455566776654

>TIGR00618 sbcc exonuclease SbcC

Probab=98.62  E-value=6.6e-08  Score=117.82  Aligned_cols=83  Identities=16%  Similarity=0.061  Sum_probs=68.3

Q ss_pred             chhhhcccccccHHHH-HHHHHHHhcC----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          405 HQSLEQNLSTFSGHIS-RIVDILELVS----------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       405 ~~~~~~~~stfS~g~~-rl~~~~~l~~----------~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      .....+++.+|||||+ +++++++++.          +|+++||||||+|+|+.....+.. ++..+...|.+|+|+||+
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l~~~g~~i~iisH~ 1019 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAIREGSKMIGIISHV 1019 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCc
Confidence            3455678999999999 7888877653          799999999999999999999999 556677778899999999


Q ss_pred             hhHH-hhccccceeeC
Q 006974          474 ADLS-CLKDKDTRFEN  488 (623)
Q Consensus       474 ~~l~-~~~~~~~~i~~  488 (623)
                      .++. .+++++.++..
T Consensus      1020 ~~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618      1020 PEFRERIPHRILVKKT 1035 (1042)
T ss_pred             HHHHHhhCCEEEEEEC
Confidence            9855 57777766643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.60  E-value=4.8e-07  Score=91.54  Aligned_cols=125  Identities=14%  Similarity=0.170  Sum_probs=74.4

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhh-hhhhhceeecCCCCCCccHHHHHHHHcCCc--hhhhc-----------cc
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLAS-LMSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLEQ-----------NL  412 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~-~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~--~~~~~-----------~~  412 (623)
                      ++.| .++.|+||+|+|||||..+++.-. -....+.|+-.+. ..-.+..+ +..+|..  +.+..           ..
T Consensus        22 ~~~g-~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~   98 (234)
T PRK06067         22 IPFP-SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGF   98 (234)
T ss_pred             CcCC-cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHH-HHHCCCChhHHHhCCCceEEecccccc
Confidence            4567 899999999999999999983322 1244556776654 22222222 2334421  11111           11


Q ss_pred             ccccHHHH-HHHHHHHhcC--CCcEEEEeCCCCCC---CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          413 STFSGHIS-RIVDILELVS--RESLVLIDEIGSGT---DPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       413 stfS~g~~-rl~~~~~l~~--~~~LlLLDEp~~gl---D~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      +..+.++. .+..+...+.  +|+++++|||+..+   |+.....+.. .+..+.+.++|+++++|...
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~tvllt~~~~~  166 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKTILITLHPYA  166 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCc
Confidence            22344555 4555555443  89999999999654   4444444444 34455667889999999754

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.51  E-value=1.5e-07  Score=107.31  Aligned_cols=87  Identities=22%  Similarity=0.239  Sum_probs=68.9

Q ss_pred             HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc----------CCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcC
Q 006974          396 DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV----------SRESLVLIDEIG-SGTDPSEGVALATSILQYLRDR  463 (623)
Q Consensus       396 d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~----------~~~~LlLLDEp~-~glD~~~~~~l~~all~~l~~~  463 (623)
                      +..+...|..   ...+.+||+|++ +++++++++          .+|+++|||||| +++|+.....+.. ++..+  .
T Consensus       453 ~~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~--~  526 (562)
T PHA02562        453 NETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL--K  526 (562)
T ss_pred             hhHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--C
Confidence            3444444542   347789999999 788887765          589999999998 7899999999998 55555  4


Q ss_pred             CcEEEEEcCchhHHhhccccceeeC
Q 006974          464 VGLAVVTTHYADLSCLKDKDTRFEN  488 (623)
Q Consensus       464 ~~~vii~TH~~~l~~~~~~~~~i~~  488 (623)
                      +.++|++||+.++...+++++.+.+
T Consensus       527 ~~~iiiish~~~~~~~~d~~~~l~~  551 (562)
T PHA02562        527 DTNVFVISHKDHDPQKFDRHLKMEK  551 (562)
T ss_pred             CCeEEEEECchhchhhhhcEEEEEE
Confidence            7899999999887788888887765

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.51  E-value=4.7e-07  Score=99.51  Aligned_cols=141  Identities=16%  Similarity=0.098  Sum_probs=91.9

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC-----CccHHHHHHH-HcCCchhhhc-----
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP-----RLPWFDLILA-DIGDHQSLEQ-----  410 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~-----~l~~~d~i~~-~ig~~~~~~~-----  410 (623)
                      ++ +.+.+| ++++|+|+||+|||||++++        +|...|..+..     .-.-+..+.. .++.. .+.+     
T Consensus       151 ~l-~~i~~G-q~i~I~G~sG~GKStLl~~I--------~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~-~l~r~v~vv  219 (438)
T PRK07721        151 SL-LTVGKG-QRVGIFAGSGVGKSTLMGMI--------ARNTSADLNVIALIGERGREVREFIERDLGPE-GLKRSIVVV  219 (438)
T ss_pred             ee-eeecCC-cEEEEECCCCCCHHHHHHHH--------hcccCCCeEEEEEEecCCccHHHHHHhhcChh-hhcCeEEEE
Confidence            55 999999 89999999999999999999        33322222100     0000112211 12221 1222     


Q ss_pred             ccccccHHHH-HHHHH---HH----hcCCCcEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHhc-
Q 006974          411 NLSTFSGHIS-RIVDI---LE----LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRD-  462 (623)
Q Consensus       411 ~~stfS~g~~-rl~~~---~~----l~~~~~LlLLD-----------------Ep--~~glD~~~~~~l~~all~~l~~-  462 (623)
                      ..+.=|..++ +...+   .+    -....=|+++|                 ||  ++|+||.....+.. +++.+.. 
T Consensus       220 ~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~-ller~~~~  298 (438)
T PRK07721        220 ATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPK-LLERTGTN  298 (438)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHH-HHHHhcCC
Confidence            2234445555 32222   11    12445588899                 75  78999999999998 7777763 


Q ss_pred             -CCc-----EEEEEcCchhHHhhccccceeeCceEEEec
Q 006974          463 -RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       463 -~~~-----~vii~TH~~~l~~~~~~~~~i~~g~~~~~~  495 (623)
                       .|.     ||++.|||++ ..+|++...+.+|++..+.
T Consensus       299 ~~GsIT~~~TVlv~~hdm~-e~i~d~v~~i~dG~Ivls~  336 (438)
T PRK07721        299 ASGSITAFYTVLVDGDDMN-EPIADTVRGILDGHFVLDR  336 (438)
T ss_pred             CCCCeeeEEEEEEECCCCC-chhhhhEEEecCEEEEEec
Confidence             564     8999999987 4789999999999998874

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.49  E-value=2.1e-06  Score=77.24  Aligned_cols=116  Identities=20%  Similarity=0.217  Sum_probs=64.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhh-hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhc
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSK-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~-~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      ..++|+||+|+||||+++.++....... ...++..+...........      ...........++... +.....+..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK   76 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999932221111 1222222211111111111      1122223333444444 433444444


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHhcCCcEEEEEcCc
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALAT-----SILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~-----all~~l~~~~~~vii~TH~  473 (623)
                      ..+.++++||+..-.+.........     .........+..+|+++|.
T Consensus        77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            4579999999999999988776543     1223333446678888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.48  E-value=3e-07  Score=110.39  Aligned_cols=78  Identities=18%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             hcccccccHHHH-HHHHHH------HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974          409 EQNLSTFSGHIS-RIVDIL------ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD  481 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~------~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~  481 (623)
                      ..++.+||||++ ++++++      .++.+|+++||||||+|+|+.....+...+.. +...+.++|++||+.++...|+
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~-~~~~~~~iiiith~~~~~~~~d  861 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMER-YLRKIPQVIIVSHDEELKDAAD  861 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHhCC
Confidence            467889999998 455442      46789999999999999999999999995544 5555679999999999888899


Q ss_pred             ccceee
Q 006974          482 KDTRFE  487 (623)
Q Consensus       482 ~~~~i~  487 (623)
                      +++.+.
T Consensus       862 ~~~~l~  867 (880)
T PRK03918        862 YVIRVS  867 (880)
T ss_pred             eEEEEE
Confidence            887765

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.47  E-value=2.4e-07  Score=101.16  Aligned_cols=143  Identities=10%  Similarity=0.098  Sum_probs=85.2

Q ss_pred             cccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhce--eecCCCCCCc-cHHHHHHHHcCCch-hhhccccc
Q 006974          340 PVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGL--YLPAKNHPRL-PWFDLILADIGDHQ-SLEQNLST  414 (623)
Q Consensus       340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~--~vp~~~~~~l-~~~d~i~~~ig~~~-~~~~~~st  414 (623)
                      .++..+.+.+| +.++|+|+||+|||||++++ +.....  .|.  ++...+ ... .++...+..-|... -+-...++
T Consensus       146 aID~ll~I~~G-qri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg-~ev~e~~~~~l~~~gl~~tvvv~~tsd  221 (432)
T PRK06793        146 SIDSMLTIGIG-QKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG-REVKDFIRKELGEEGMRKSVVVVATSD  221 (432)
T ss_pred             EEeccceecCC-cEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc-ccHHHHHHHHhhhcccceeEEEEECCC
Confidence            45667999999 89999999999999999999 332221  121  222222 111 11222222222221 12345678


Q ss_pred             ccHHHH-HHHHHHHhc-------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974          415 FSGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       415 fS~g~~-rl~~~~~l~-------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      -|.+++ +...+....       .++-||++|+||++.|+.  ..+.. .+...-..|-+..+.||...+.+   +.-..
T Consensus       222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl-~~~e~p~~G~~~~~~s~l~~L~E---Rag~~  295 (432)
T PRK06793        222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDI-AVKELPIGGKTLLMESYMKKLLE---RSGKT  295 (432)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHH-HhcCCCCCCeeeeeeccchhHHH---HhccC
Confidence            889998 655554433       688899999999999996  33433 23333334567777788544443   32223


Q ss_pred             eCceEE
Q 006974          487 ENAATE  492 (623)
Q Consensus       487 ~~g~~~  492 (623)
                      ..|++.
T Consensus       296 ~~GSiT  301 (432)
T PRK06793        296 QKGSIT  301 (432)
T ss_pred             CCcceE
Confidence            566654

>PRK01156 chromosome segregation protein; Provisional

Probab=98.42  E-value=6e-07  Score=108.04  Aligned_cols=78  Identities=19%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             cccccccHHHH-HHHHH------HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC--cEEEEEcCchhHHhhc
Q 006974          410 QNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV--GLAVVTTHYADLSCLK  480 (623)
Q Consensus       410 ~~~stfS~g~~-rl~~~------~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~--~~vii~TH~~~l~~~~  480 (623)
                      .++..||||++ +++++      ..++.+|++++|||||+|+|+.....+...+...+...+  .++|++||++++..+|
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~  876 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA  876 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence            46889999998 66654      457789999999999999999999999885544455543  3799999999988899


Q ss_pred             cccceee
Q 006974          481 DKDTRFE  487 (623)
Q Consensus       481 ~~~~~i~  487 (623)
                      ++++.+.
T Consensus       877 d~ii~~~  883 (895)
T PRK01156        877 DVAYEVK  883 (895)
T ss_pred             CeEEEEE
Confidence            9888765

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.40  E-value=1.8e-07  Score=98.75  Aligned_cols=124  Identities=12%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             ccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCc--hhhh-------cccc
Q 006974          343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH--QSLE-------QNLS  413 (623)
Q Consensus       343 i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~--~~~~-------~~~s  413 (623)
                      +++.+..| ..++|+|||||||||||+++        ++.+.|..+.  +. ++...+ +...  ....       ....
T Consensus       137 l~~~v~~~-~~ili~G~tGsGKTTll~al--------~~~~~~~~~i--v~-ied~~E-l~~~~~~~~~l~~~~~~~~~~  203 (308)
T TIGR02788       137 LRLAIASR-KNIIISGGTGSGKTTFLKSL--------VDEIPKDERI--IT-IEDTRE-IFLPHPNYVHLFYSKGGQGLA  203 (308)
T ss_pred             HHHHhhCC-CEEEEECCCCCCHHHHHHHH--------HccCCccccE--EE-EcCccc-cCCCCCCEEEEEecCCCCCcC
Confidence            44567778 89999999999999999999        5543232221  11 111110 0000  0000       0011


Q ss_pred             cccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCce
Q 006974          414 TFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAA  490 (623)
Q Consensus       414 tfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~  490 (623)
                      .++.  . -.+...+..+|+.+++|||..       ..+.. +++.+...+..++.|+|..+.....++...+..++
T Consensus       204 ~~~~--~-~~l~~~Lr~~pd~ii~gE~r~-------~e~~~-~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~  269 (308)
T TIGR02788       204 KVTP--K-DLLQSCLRMRPDRIILGELRG-------DEAFD-FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSS  269 (308)
T ss_pred             ccCH--H-HHHHHHhcCCCCeEEEeccCC-------HHHHH-HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhcc
Confidence            1111  1 122234678999999999995       22233 45555433335689999988766666665554443

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.39  E-value=4.3e-07  Score=89.72  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974          353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR  431 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~  431 (623)
                      +++|+||+||||||+++.+ +.+... ..+..+--+....+.. ......+. ...+.....+|+..     +..++..+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E~~~-~~~~~~i~-q~~vg~~~~~~~~~-----i~~aLr~~   74 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIEFVH-ESKRSLIN-QREVGLDTLSFENA-----LKAALRQD   74 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCccccc-cCccceee-ecccCCCccCHHHH-----HHHHhcCC
Confidence            7899999999999999987 222111 1111111111111100 00000000 00011112233322     23345678


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT  484 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~  484 (623)
                      |+++++|||.   |+.....    +++ ....|..++.|+|..+.....++..
T Consensus        75 pd~ii~gEir---d~e~~~~----~l~-~a~~G~~v~~t~Ha~~~~~~~~Rl~  119 (198)
T cd01131          75 PDVILVGEMR---DLETIRL----ALT-AAETGHLVMSTLHTNSAAKTIDRII  119 (198)
T ss_pred             cCEEEEcCCC---CHHHHHH----HHH-HHHcCCEEEEEecCCcHHHHHhHHH
Confidence            9999999995   5554333    233 2345888999999987555455443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.36  E-value=3.1e-07  Score=91.51  Aligned_cols=49  Identities=18%  Similarity=0.055  Sum_probs=38.1

Q ss_pred             cccccHH--HH-HHHHHHHhcCCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 006974          412 LSTFSGH--IS-RIVDILELVSRESLVLIDEIG-----SGTDPSEGVALATSILQYLR  461 (623)
Q Consensus       412 ~stfS~g--~~-rl~~~~~l~~~~~LlLLDEp~-----~glD~~~~~~l~~all~~l~  461 (623)
                      .|..+++  ++ ...++..++.+|+++++||||     +|+||.....+.. ++..++
T Consensus       148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~-~~~~~~  204 (215)
T PTZ00132        148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEK-ELQAAA  204 (215)
T ss_pred             EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHH-HHHHHh
Confidence            3444544  33 467778899999999999999     9999999999998 444444

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.36  E-value=8.7e-07  Score=107.80  Aligned_cols=69  Identities=20%  Similarity=0.085  Sum_probs=60.8

Q ss_pred             hcccccccHHHH-HHHHHHHhcC--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974          409 EQNLSTFSGHIS-RIVDILELVS--------RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC  478 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l~~--------~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~  478 (623)
                      .+++.+||||++ +++++++++.        +|+++||||||+|+|+.....+.. ++..+.+.|.+|+|+||..++..
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l~~~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDALNASGKTIGVISHVEAMKE 1021 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEecHHHHHH
Confidence            478999999999 7888888774        899999999999999999999998 66778888999999999877654

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.29  E-value=1e-06  Score=108.51  Aligned_cols=78  Identities=22%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             hhhcccccccHHHH-HHHHHHHh----cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974          407 SLEQNLSTFSGHIS-RIVDILEL----VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD  481 (623)
Q Consensus       407 ~~~~~~stfS~g~~-rl~~~~~l----~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~  481 (623)
                      ..+..+..||||++ ++++++++    +.+|+++|||||++|+|+.....+.. ++..+.+ +.++||+||++.+..+||
T Consensus      1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~~i~~sh~~~~~~~~d 1159 (1179)
T TIGR02168      1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQFIVITHNKGTMEVAD 1159 (1179)
T ss_pred             CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCEEEEEEcChhHHHHhh
Confidence            34578899999999 77777775    47789999999999999999999988 5555654 478999999998878899


Q ss_pred             cccee
Q 006974          482 KDTRF  486 (623)
Q Consensus       482 ~~~~i  486 (623)
                      +++.+
T Consensus      1160 ~~~~~ 1164 (1179)
T TIGR02168      1160 QLYGV 1164 (1179)
T ss_pred             hHeee
Confidence            88765

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=98.24  E-value=3.1e-06  Score=105.50  Aligned_cols=75  Identities=16%  Similarity=0.131  Sum_probs=60.1

Q ss_pred             hhhhcccccccHHHHH-------HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEcCch
Q 006974          406 QSLEQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR----DRVGLAVVTTHYA  474 (623)
Q Consensus       406 ~~~~~~~stfS~g~~r-------l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~----~~~~~vii~TH~~  474 (623)
                      +......+.||+|+++       ++++.+++.+|.+++|||||+|+|+.....|...+...+.    ..|.++|++||+.
T Consensus      1191 ~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~ 1270 (1311)
T TIGR00606      1191 DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE 1270 (1311)
T ss_pred             CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH
Confidence            3334455799999995       6778889999999999999999999999999986666443    2367999999998


Q ss_pred             h-HHhhc
Q 006974          475 D-LSCLK  480 (623)
Q Consensus       475 ~-l~~~~  480 (623)
                      + +..+|
T Consensus      1271 ~~~~~~~ 1277 (1311)
T TIGR00606      1271 DFVELLG 1277 (1311)
T ss_pred             HHHHHHh
Confidence            8 44555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.17  E-value=3.8e-06  Score=101.14  Aligned_cols=79  Identities=24%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             hcccccccHHHH-HHHHHHHh------cCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          409 EQNLSTFSGHIS-RIVDILEL------VSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l------~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      .+++++||||++ .+++++++      ..+  -++++|||||..||+.....++. +++.+...+.+|+||||+.++...
T Consensus       810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~-~l~~i~~~~~qiiIISH~eel~e~  888 (908)
T COG0419         810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE-ILEELLSDGRQIIIISHVEELKER  888 (908)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHH-HHHHHHhcCCeEEEEeChHHHHHh
Confidence            578999999999 56555443      234  58999999999999999999999 666777778899999999999999


Q ss_pred             ccccceeeC
Q 006974          480 KDKDTRFEN  488 (623)
Q Consensus       480 ~~~~~~i~~  488 (623)
                      ++..+.+..
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            988877653

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.11  E-value=1.3e-05  Score=81.98  Aligned_cols=73  Identities=11%  Similarity=0.100  Sum_probs=53.0

Q ss_pred             cccHHH--------H-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974          414 TFSGHI--------S-RIVDILELVSRESLVLIDEIGSGTDPSEGVA-LATSILQYLRDRVGLAVVTTHYADLSCLKDKD  483 (623)
Q Consensus       414 tfS~g~--------~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~-l~~all~~l~~~~~~vii~TH~~~l~~~~~~~  483 (623)
                      .+|||.        + ++..++....++++.+|  ||..+|+.+-.. +   +++.+...+.+.|+.||.+......+.+
T Consensus       129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~~ivls~~la~~~~~paI  203 (249)
T cd01128         129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNMELVLDRRLAERRIFPAI  203 (249)
T ss_pred             CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCcEEEEchHHhhCCCCCeE
Confidence            457777        4 67777776689999999  999999644332 3   2456665677899999998766667777


Q ss_pred             ceeeCceE
Q 006974          484 TRFENAAT  491 (623)
Q Consensus       484 ~~i~~g~~  491 (623)
                      .++..|+.
T Consensus       204 ~vl~s~sr  211 (249)
T cd01128         204 DILKSGTR  211 (249)
T ss_pred             EEcCCCCc
Confidence            77776654

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.05  E-value=6.4e-06  Score=101.63  Aligned_cols=78  Identities=13%  Similarity=0.057  Sum_probs=63.9

Q ss_pred             hhcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccc
Q 006974          408 LEQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDK  482 (623)
Q Consensus       408 ~~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~  482 (623)
                      ....++.||||++ ++++++.++    .+|+++|||||++|+|+.....+.. ++..+.. ++.+|++||+..+..+||+
T Consensus      1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~l~~~~~-~~~~i~~t~~~~~~~~~d~ 1145 (1164)
T TIGR02169      1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK-LIREKAG-EAQFIVVSLRSPMIEYADR 1145 (1164)
T ss_pred             CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHhcce
Confidence            3466789999999 677776665    5889999999999999999999998 5555554 4679999999887789998


Q ss_pred             cceee
Q 006974          483 DTRFE  487 (623)
Q Consensus       483 ~~~i~  487 (623)
                      .+.+.
T Consensus      1146 ~~~~~ 1150 (1164)
T TIGR02169      1146 AIGVT 1150 (1164)
T ss_pred             eEeEE
Confidence            87654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.03  E-value=3.6e-05  Score=69.86  Aligned_cols=108  Identities=21%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      .+ ..+.|+||.|+||||+++.+.-... ......++....... ..  ......+..             .........
T Consensus        18 ~~-~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~~~~~-------------~~~~~~~~~   80 (151)
T cd00009          18 PP-KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE-GL--VVAELFGHF-------------LVRLLFELA   80 (151)
T ss_pred             CC-CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh-hh--HHHHHhhhh-------------hHhHHHHhh
Confidence            35 7899999999999999999922111 000111121111000 00  000000000             122333344


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-----CCcEEEEEcCchh
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-----RVGLAVVTTHYAD  475 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-----~~~~vii~TH~~~  475 (623)
                      ...++.++++||.-.. ++.....+.. +++.+..     .+..+|++|+...
T Consensus        81 ~~~~~~~lilDe~~~~-~~~~~~~~~~-~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          81 EKAKPGVLFIDEIDSL-SRGAQNALLR-VLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             ccCCCeEEEEeChhhh-hHHHHHHHHH-HHHhcCceeccCCCeEEEEecCccc
Confidence            5678899999999876 5555566666 3444432     4678888888754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.01  E-value=1.2e-05  Score=81.66  Aligned_cols=46  Identities=17%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             cCCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGS------GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~------glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ..+|++||+| |.+      ..|+.....+...+.....+.++++|+++|...
T Consensus       109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            5799999999 654      478888888888555544556899999999853

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.01  E-value=6.4e-05  Score=77.64  Aligned_cols=67  Identities=24%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             ccccHHHHH-HHHHHHhc--CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974          413 STFSGHISR-IVDILELV--SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD  481 (623)
Q Consensus       413 stfS~g~~r-l~~~~~l~--~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~  481 (623)
                      ..||-|..| ++++..+.  ..|.++++|||-++|-|.---+|+..+-. .++. .-||++||..++.....
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~s-Aak~-sQv~VsTHS~rLl~~~e  338 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRS-AAKR-SQVIVSTHSPRLLNAVE  338 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHH-hhcc-ceEEEEeCCHHHHhhcc
Confidence            378988775 66665554  46789999999999999999999984444 3443 37999999988765433

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.00  E-value=2e-05  Score=90.06  Aligned_cols=89  Identities=26%  Similarity=0.259  Sum_probs=73.2

Q ss_pred             HHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          399 LADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       399 ~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +.++|++ =.+++...|||||+. |+.+|..+-.+  .=+++||||.-||-+.+-..|.. .+..|++.|.|+|+|.||.
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~-tL~~LRDlGNTviVVEHDe  543 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIE-TLKRLRDLGNTVIVVEHDE  543 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHH-HHHHHHhcCCeEEEEecCH
Confidence            4455654 357899999999998 77777664333  35899999999999999999999 6778999999999999999


Q ss_pred             hHHhhccccceeeC
Q 006974          475 DLSCLKDKDTRFEN  488 (623)
Q Consensus       475 ~l~~~~~~~~~i~~  488 (623)
                      +.-..||+++.+..
T Consensus       544 dti~~AD~iIDiGP  557 (935)
T COG0178         544 DTIRAADHIIDIGP  557 (935)
T ss_pred             HHHhhcCEEEeeCC
Confidence            98888998876543

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=97.96  E-value=2.1e-05  Score=93.53  Aligned_cols=46  Identities=22%  Similarity=0.182  Sum_probs=39.8

Q ss_pred             cCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ..+|.++++|||..++ ||.....+.. .+..+++.|++++++||+.+
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~-~lk~~RK~~~~vil~Tq~~~  696 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIRE-WLKVLRKANCAVVLATQSIS  696 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHH
Confidence            5799999999999999 6888777777 66667788899999999986

>PRK09183 transposase/IS protein; Provisional

Probab=97.95  E-value=2.1e-05  Score=81.07  Aligned_cols=109  Identities=22%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS  420 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~  420 (623)
                      .+++ +..| +.++|+||+|+|||+|..++|...... ....|++.         ..++..+....  ..  .       
T Consensus        95 ~~~~-i~~~-~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~---------~~l~~~l~~a~--~~--~-------  152 (259)
T PRK09183         95 SLSF-IERN-ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA---------ADLLLQLSTAQ--RQ--G-------  152 (259)
T ss_pred             cCCc-hhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH---------HHHHHHHHHHH--HC--C-------
Confidence            4555 7778 889999999999999999996543221 11122221         12222211000  00  0       


Q ss_pred             HHHHHH-HhcCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          421 RIVDIL-ELVSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       421 rl~~~~-~l~~~~~LlLLDEp~~g-lD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ++.... .....++++++||.+.. .+......|.. +++...+++ .+|+||+..
T Consensus       153 ~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~-li~~r~~~~-s~iiTsn~~  206 (259)
T PRK09183        153 RYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQ-VIAKRYEKG-SMILTSNLP  206 (259)
T ss_pred             cHHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHH-HHHHHHhcC-cEEEecCCC
Confidence            111111 22578899999999854 66655556666 666555544 567888873

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.95  E-value=0.00013  Score=73.46  Aligned_cols=125  Identities=17%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCc--hh-----------h----
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDH--QS-----------L----  408 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~--~~-----------~----  408 (623)
                      +++| ++++|.||+|+|||||...+..... ....+.|+.....  ..-+-+....+|..  +.           +    
T Consensus        17 i~~G-~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~--~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~   93 (229)
T TIGR03881        17 IPRG-FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES--RESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEK   93 (229)
T ss_pred             CcCC-eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC--HHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccc
Confidence            5678 8999999999999999988732211 1233445544321  11111112222211  00           0    


Q ss_pred             --hcccccccHHHH--HHHHHHHhc-CCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          409 --EQNLSTFSGHIS--RIVDILELV-SRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       409 --~~~~stfS~g~~--rl~~~~~l~-~~~~LlLLDEp~~gl--D~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                        ...+..++....  ++..+.... .++.++++|-|+.-+  +|.....+...+...+++.++|+|+++|..
T Consensus        94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~  166 (229)
T TIGR03881        94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA  166 (229)
T ss_pred             ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence              011122343332  233333322 257788888887543  444344455557777778899999999964

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.94  E-value=1.6e-05  Score=95.69  Aligned_cols=77  Identities=21%  Similarity=0.130  Sum_probs=59.1

Q ss_pred             cccccccHHHHH-HHHHH------HhcC-----C-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEcCchh
Q 006974          410 QNLSTFSGHISR-IVDIL------ELVS-----R-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTTHYAD  475 (623)
Q Consensus       410 ~~~stfS~g~~r-l~~~~------~l~~-----~-~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~-~vii~TH~~~  475 (623)
                      ..+..||||+++ +++++      .++.     . ++++|||||++|+|+.....+.. ++..+...|. +||++||+.+
T Consensus       777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~-~l~~~~~~~~~qviiish~~~  855 (880)
T PRK02224        777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD-LVESMRRLGVEQIVVVSHDDE  855 (880)
T ss_pred             cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH-HHHHHHhcCCCeEEEEECChH
Confidence            357899999984 33332      3332     2 26799999999999999999998 6666766554 7999999999


Q ss_pred             HHhhccccceee
Q 006974          476 LSCLKDKDTRFE  487 (623)
Q Consensus       476 l~~~~~~~~~i~  487 (623)
                      +...|++++.+.
T Consensus       856 ~~~~ad~~~~~~  867 (880)
T PRK02224        856 LVGAADDLVRVE  867 (880)
T ss_pred             HHHhcCeeEEee
Confidence            778899887774

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.94  E-value=4.7e-05  Score=84.50  Aligned_cols=92  Identities=20%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHh-hhhhhh--hhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccc
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLG-LASLMS--KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF  415 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a--~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stf  415 (623)
                      +.++.++.| .+++++||||+||||++..++ ......  ....+++++. .+++.++++-   ..+|..-        .
T Consensus       248 ~~~~~~~~g-~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt-~RigA~EQLr~~AeilGVpv--------~  317 (484)
T PRK06995        248 SEDALLDRG-GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS-YRIGGHEQLRIYGKILGVPV--------H  317 (484)
T ss_pred             CccccccCC-cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc-cchhHHHHHHHHHHHhCCCe--------e
Confidence            344556677 899999999999999999994 332221  1234677765 4666666553   2223211        1


Q ss_pred             cHHH-HHHHHHHHhcCCCcEEEEeCCCCC
Q 006974          416 SGHI-SRIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       416 S~g~-~rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                      .... ..+...+..+.+..++++|.+|.+
T Consensus       318 ~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~  346 (484)
T PRK06995        318 AVKDAADLRLALSELRNKHIVLIDTIGMS  346 (484)
T ss_pred             ccCCchhHHHHHHhccCCCeEEeCCCCcC
Confidence            0111 122333445566789999997654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.92  E-value=7.9e-06  Score=80.40  Aligned_cols=90  Identities=16%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC----------------------CCccHHHHHHHHcCCchhhh
Q 006974          353 VVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----------------------PRLPWFDLILADIGDHQSLE  409 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~----------------------~~l~~~d~i~~~ig~~~~~~  409 (623)
                      +++|+||+|||||||.+++ +++.  .....+++.+..                      ..+..+...+..+...+.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~--~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~   78 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE   78 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC--CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence            5799999999999999999 5431  000111222110                      00111223444455555566


Q ss_pred             cccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          410 QNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       410 ~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      .+...+|.++......  .+.+++++|+|.|+.+.++
T Consensus        79 ~p~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          79 IPVYDFKTHSRLKETV--TVYPADVIILEGILALYDK  113 (198)
T ss_pred             ccccccccCcccCCce--ecCCCCEEEEechhhccch
Confidence            6677777776521111  4578899999999999887

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.90  E-value=1.7e-05  Score=85.14  Aligned_cols=113  Identities=16%  Similarity=0.160  Sum_probs=57.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      ++ .+++|+||+||||||+|+.+ +.+... ..+..+-.+....+. .......+. ...+....-+|     .-.+..+
T Consensus       121 ~~-g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~-----~~~l~~~  191 (343)
T TIGR01420       121 PR-GLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSF-----ANALRAA  191 (343)
T ss_pred             cC-cEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCH-----HHHHHHh
Confidence            44 68999999999999999998 222100 011111111101110 000000000 00000001122     1112234


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC  478 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~  478 (623)
                      +-.+|+++++||+.   |+........     ....|.+++.|+|-.+...
T Consensus       192 lr~~pd~i~vgEir---d~~~~~~~l~-----aa~tGh~v~~T~Ha~~~~~  234 (343)
T TIGR01420       192 LREDPDVILIGEMR---DLETVELALT-----AAETGHLVFGTLHTNSAAQ  234 (343)
T ss_pred             hccCCCEEEEeCCC---CHHHHHHHHH-----HHHcCCcEEEEEcCCCHHH
Confidence            56899999999996   7766654333     2344888889999865443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.90  E-value=0.0002  Score=82.62  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH-hhh
Q 006974          352 RVVVITGPNTGGKTASMKTL-GLA  374 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i-gl~  374 (623)
                      ..++|+||||+||||+.+++ +..
T Consensus       176 ~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       176 QHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhh
Confidence            56899999999999999999 443

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.89  E-value=1e-05  Score=79.07  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=25.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+.+.+..| ..++|+|||||||||+++++
T Consensus        17 ~l~~~v~~g-~~i~I~G~tGSGKTTll~aL   45 (186)
T cd01130          17 YLWLAVEAR-KNILISGGTGSGKTTLLNAL   45 (186)
T ss_pred             HHHHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence            345667788 89999999999999999999

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=0.00015  Score=79.32  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=55.6

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhhhhhh---hhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISR  421 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~---a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~g~~r  421 (623)
                      ..| ++++++||||+||||+++.++-..++   ...+.++..+. .+++.++++.   ..+|..-      ....... .
T Consensus       189 ~~g-~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~-~rigalEQL~~~a~ilGvp~------~~v~~~~-d  259 (420)
T PRK14721        189 EQG-GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS-YRIGGHEQLRIYGKLLGVSV------RSIKDIA-D  259 (420)
T ss_pred             CCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC-cchhHHHHHHHHHHHcCCce------ecCCCHH-H
Confidence            467 89999999999999999988432221   12345666665 5777777653   2233221      1111111 2


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHH
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEG  449 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~  449 (623)
                      +..++....+.+++++|.+  |..+...
T Consensus       260 l~~al~~l~~~d~VLIDTa--Grsqrd~  285 (420)
T PRK14721        260 LQLMLHELRGKHMVLIDTV--GMSQRDQ  285 (420)
T ss_pred             HHHHHHHhcCCCEEEecCC--CCCcchH
Confidence            3444555778899999976  5555443

>PRK04296 thymidine kinase; Provisional

Probab=97.88  E-value=6.6e-05  Score=73.72  Aligned_cols=142  Identities=19%  Similarity=0.134  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhh-hhce-eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhc
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMS-KAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV  429 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~-~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~  429 (623)
                      .+++|+||.|+||||++..+..-...+ +... +.|.-. .... ...+..++|..-.. ...  .+... -+..+....
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d-~~~~-~~~i~~~lg~~~~~-~~~--~~~~~-~~~~~~~~~   76 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAID-DRYG-EGKVVSRIGLSREA-IPV--SSDTD-IFELIEEEG   76 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccc-cccc-CCcEecCCCCcccc-eEe--CChHH-HHHHHHhhC
Confidence            789999999999999887662221111 1112 223211 1111 22345555532110 001  11111 111111134


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-----------hHHhhccccceeeCceEEEecCcc
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTRFENAATEFSLETL  498 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-----------~l~~~~~~~~~i~~g~~~~~~~~l  498 (623)
                      .+.++|++||.-. ++...   +.. +++.++..|.+||++.++.           .+..++|.+..+..-.+.+. ..-
T Consensus        77 ~~~dvviIDEaq~-l~~~~---v~~-l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~Cg-~~a  150 (190)
T PRK04296         77 EKIDCVLIDEAQF-LDKEQ---VVQ-LAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVHCG-RKA  150 (190)
T ss_pred             CCCCEEEEEcccc-CCHHH---HHH-HHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccccC-Ccc
Confidence            5779999999933 44322   333 6666777899999999992           35567777766654433322 223


Q ss_pred             ccccccc
Q 006974          499 RPTYRIL  505 (623)
Q Consensus       499 ~~~y~l~  505 (623)
                      .+++|+.
T Consensus       151 ~~~~r~~  157 (190)
T PRK04296        151 TMNQRLI  157 (190)
T ss_pred             ceEEEEe
Confidence            3445554

>TIGR00767 rho transcription termination factor Rho

Probab=97.85  E-value=0.00033  Score=75.75  Aligned_cols=45  Identities=13%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             cEEEceeeeecCCc--------------cccccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          326 EMTVGSLSKGISDF--------------PVPIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       326 ~l~~~~l~~~y~~~--------------~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+.++||++.|++.              .+++.+.+..| +.++|+||.|+||||+++.+
T Consensus       130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~G-q~~~IvG~~g~GKTtL~~~i  188 (415)
T TIGR00767       130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKG-QRGLIVAPPKAGKTVLLQKI  188 (415)
T ss_pred             CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCC-CEEEEECCCCCChhHHHHHH
Confidence            46677777777532              12677888899 89999999999999999998

Members of this family differ in the specificity of RNA binding.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.82  E-value=1.5e-05  Score=70.72  Aligned_cols=29  Identities=31%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|.+.+| ++++|+||+|||||||++++
T Consensus         7 ~vsl~i~~g-e~v~I~GpSGsGKSTLl~~l   35 (107)
T cd00820           7 GVLVDVYGK-VGVLITGDSGIGKTELALEL   35 (107)
T ss_pred             eeEEEEcCC-EEEEEEcCCCCCHHHHHHHh
Confidence            788999999 99999999999999999997

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF05190 MutS_IV: MutS family domain IV C-terminus

Probab=97.80  E-value=0.00029  Score=60.23  Aligned_cols=89  Identities=20%  Similarity=0.252  Sum_probs=65.4

Q ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEec
Q 006974          130 RASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFME  208 (623)
Q Consensus       130 ~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~e  208 (623)
                      +++++|+.+|+.+..+.+.++.++.+....    .++....+.... .+|+|.|+......+|..|+.-++..+..+|.+
T Consensus         1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~----~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t   76 (92)
T PF05190_consen    1 GFDEELDELREEYEEIEEELEELLEEIRKK----LGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTT   76 (92)
T ss_dssp             TSSHHHHHHHHHHHHHHHHHHHHHHHHHHH----CT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEEC
Confidence            578999999999999888888888776543    344344444444 489999999887778888988877777667766


Q ss_pred             cchhhhhhHHHHHHh
Q 006974          209 PKGAVEFNNMEVRLS  223 (623)
Q Consensus       209 p~~~~~l~~~~~~l~  223 (623)
                      | ++..|+.++.++.
T Consensus        77 ~-~l~~L~~~~~~~~   90 (92)
T PF05190_consen   77 P-ELKELNEELKEAE   90 (92)
T ss_dssp             H-HHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHh
Confidence            6 4777777765543

; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....

>PRK00064 recF recombination protein F; Reviewed

Probab=97.79  E-value=4.3e-05  Score=82.51  Aligned_cols=78  Identities=19%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             cccccccHHHH-HHHHHHHhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHh
Q 006974          410 QNLSTFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSC  478 (623)
Q Consensus       410 ~~~stfS~g~~-rl~~~~~l~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~  478 (623)
                      .....+|.|++ ++.+++.++         .+|+++|||||+++||+.....+...+.+    .++.+++|||+.+ +..
T Consensus       269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~----~~~qv~it~~~~~~~~~  344 (361)
T PRK00064        269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKG----LGAQVFITTTDLEDLAD  344 (361)
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhc----cCCEEEEEcCChhhhhh
Confidence            45678899999 577776664         78999999999999999999888773322    2457899999865 444


Q ss_pred             hc--cccceeeCceE
Q 006974          479 LK--DKDTRFENAAT  491 (623)
Q Consensus       479 ~~--~~~~~i~~g~~  491 (623)
                      ++  .+.+.+.+|.+
T Consensus       345 ~~~~~~i~~v~~G~i  359 (361)
T PRK00064        345 LLENAKIFHVEQGKI  359 (361)
T ss_pred             hhccCcEEEEeCCEE
Confidence            43  24556666654

>TIGR00416 sms DNA repair protein RadA

Probab=97.79  E-value=0.00023  Score=79.14  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhh-hhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI  425 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl-~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~  425 (623)
                      +.+| .+++|.|++|+|||||+.+++. +........|+-.+.  ...-+..-..++|....--.-....+.  ..+...
T Consensus        91 i~~G-svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE--s~~qi~~ra~rlg~~~~~l~~~~e~~~--~~I~~~  165 (454)
T TIGR00416        91 IVPG-SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE--SLQQIKMRAIRLGLPEPNLYVLSETNW--EQICAN  165 (454)
T ss_pred             ccCC-eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC--CHHHHHHHHHHcCCChHHeEEcCCCCH--HHHHHH
Confidence            5567 8999999999999999999832 222222345654433  111111113355543211111111111  122222


Q ss_pred             HHhcCCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHhcCCcEEEEEcCchh---------HHhhccccceee
Q 006974          426 LELVSRESLVLIDEIGSGTD---------PSEGVALATSILQYLRDRVGLAVVTTHYAD---------LSCLKDKDTRFE  487 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD---------~~~~~~l~~all~~l~~~~~~vii~TH~~~---------l~~~~~~~~~i~  487 (623)
                      + ...+|+++++|....=..         +.....+...+.+..++.+.|+|+++|...         +..++|.++.++
T Consensus       166 i-~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le  244 (454)
T TIGR00416       166 I-EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFE  244 (454)
T ss_pred             H-HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEe
Confidence            2 235799999998865221         222334444467767788999999999642         234556555544

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.78  E-value=1.8e-05  Score=62.93  Aligned_cols=29  Identities=31%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             ccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          343 IDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       343 i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -++.+.+...+++|+|||||||||+|.++
T Consensus        15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi   43 (62)
T PF13555_consen   15 ETIDFDPRGDVTLITGPNGSGKSTLLDAI   43 (62)
T ss_pred             eEEeecCCCcEEEEECCCCCCHHHHHHHH
Confidence            34555542168999999999999999999

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.75  E-value=0.00041  Score=76.59  Aligned_cols=146  Identities=14%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             cccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeec--CCCCCCccHHHHHH-HHcCCchhhhc-----
Q 006974          340 PVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLP--AKNHPRLPWFDLIL-ADIGDHQSLEQ-----  410 (623)
Q Consensus       340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp--~~~~~~l~~~d~i~-~~ig~~~~~~~-----  410 (623)
                      .++.-+.+.+| +.++|+|+||+|||||++++ +....  ..+.+..  ..+ ..   +.... ..++-. .+.+     
T Consensus       153 ~iD~l~~i~~G-q~~~I~G~sG~GKStLl~~I~~~~~~--~~~vi~~iG~r~-~e---v~~~~~~~~~~~-~l~~tvvv~  224 (440)
T TIGR01026       153 SIDGLLTVGKG-QRIGIFAGSGVGKSTLLGMIARNTEA--DVNVIALIGERG-RE---VREFIEHDLGEE-GLKRSVVVV  224 (440)
T ss_pred             eeeeccccCCC-cEEEEECCCCCCHHHHHHHHhCCCCC--CEEEEEEEeecc-hH---HHHHHHHHhccc-ccceEEEEE
Confidence            34444899999 89999999999999999999 22211  1111111  111 11   11111 112211 0111     


Q ss_pred             ccccccHHHH-HHHHH---HH----hcCCCcEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHhcC
Q 006974          411 NLSTFSGHIS-RIVDI---LE----LVSRESLVLID-----------------EI--GSGTDPSEGVALATSILQYLRDR  463 (623)
Q Consensus       411 ~~stfS~g~~-rl~~~---~~----l~~~~~LlLLD-----------------Ep--~~glD~~~~~~l~~all~~l~~~  463 (623)
                      ..+.=+..++ +...+   .+    -....=|+++|                 ||  ..|.||.-...+.. +++.....
T Consensus       225 ~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~-l~ERag~~  303 (440)
T TIGR01026       225 ATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPR-LLERAGAS  303 (440)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHH-HHHHhccC
Confidence            1222233444 22111   11    12344467776                 43  55899999888888 77777665


Q ss_pred             Cc-------EEEEEcCchhHHhhccccceeeCceEEEec
Q 006974          464 VG-------LAVVTTHYADLSCLKDKDTRFENAATEFSL  495 (623)
Q Consensus       464 ~~-------~vii~TH~~~l~~~~~~~~~i~~g~~~~~~  495 (623)
                      +.       ||++.+||+. ..+++....+.+|++.++.
T Consensus       304 ~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr  341 (440)
T TIGR01026       304 GKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSR  341 (440)
T ss_pred             CCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEec
Confidence            55       7788899873 4477888889999998874

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.73  E-value=0.00014  Score=73.27  Aligned_cols=127  Identities=18%  Similarity=0.221  Sum_probs=65.6

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCc-hhhhccc---ccc
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF  415 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~---stf  415 (623)
                      +..| +++.|+||+|+|||||+.++.......       ....|+-.++.....-+.+++..++.. +.....+   ..+
T Consensus        16 i~~g-~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~   94 (235)
T cd01123          16 IETG-SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY   94 (235)
T ss_pred             CCCC-eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence            4567 899999999999999999995443321       233455444322222233444443321 1111111   112


Q ss_pred             cHHHH-----HHHHHHHhcCCCcEEEEeCCCCCC-----C---HHHHHH----HHHHHHHHHhcCCcEEEEEcCch
Q 006974          416 SGHIS-----RIVDILELVSRESLVLIDEIGSGT-----D---PSEGVA----LATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       416 S~g~~-----rl~~~~~l~~~~~LlLLDEp~~gl-----D---~~~~~~----l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +..+.     ++........++.+|++|-.++-.     +   ...+..    +...+.....+.+++||+|+|-.
T Consensus        95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~  170 (235)
T cd01123          95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT  170 (235)
T ss_pred             CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence            22211     121122222378999999998621     1   123322    33323332346688888888764

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.73  E-value=0.0012  Score=68.37  Aligned_cols=138  Identities=12%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      ++ .+++++||||+||||+++.++ .+........++-.++ .+++.+.++.......+ +.- ....+  ...+..++.
T Consensus        74 ~~-~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~-~ri~~~~ql~~~~~~~~-~~~-~~~~~--~~~l~~~l~  147 (270)
T PRK06731         74 EV-QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIG-FEV-IAVRD--EAAMTRALT  147 (270)
T ss_pred             CC-CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHHhhhcC-ceE-EecCC--HHHHHHHHH
Confidence            56 899999999999999999993 3222222334555554 35566666543322111 000 00111  112222222


Q ss_pred             ---hcCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEE--c-CchhHHhhccccceeeCceEEEe
Q 006974          428 ---LVSRESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVT--T-HYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 ---l~~~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~--T-H~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                         ...+.+++|+|-|++.- |...-..+.. +++.. +..-++++.  | ...++...+...-.+.-.++.+.
T Consensus       148 ~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~-~~~~~-~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~T  219 (270)
T PRK06731        148 YFKEEARVDYILIDTAGKNYRASETVEEMIE-TMGQV-EPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT  219 (270)
T ss_pred             HHHhcCCCCEEEEECCCCCcCCHHHHHHHHH-HHhhh-CCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEE
Confidence               22467999999999874 5555555554 33322 222234332  3 33445444443322333444443

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.72  E-value=2e-05  Score=88.46  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--hhhceeecCCCCCCccHHHHHHHHcCCch--hhhc------------
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDHQ--SLEQ------------  410 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--a~~G~~vp~~~~~~l~~~d~i~~~ig~~~--~~~~------------  410 (623)
                      +++| .+++|+||+|+|||||..+....-..  ...+.|+-.... . .-+-+-+..+|..-  ..+.            
T Consensus        18 lp~g-~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~-~-~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~   94 (484)
T TIGR02655        18 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES-P-QDIIKNARSFGWDLQKLVDEGKLFILDASPDP   94 (484)
T ss_pred             CCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-H-HHHHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence            5678 89999999999999999988222111  345667655431 1 11112223333210  0000            


Q ss_pred             ----ccccccHHH--HHHHHHHHhcCCCcEEEEe---CCCCCCCH--HHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          411 ----NLSTFSGHI--SRIVDILELVSRESLVLID---EIGSGTDP--SEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       411 ----~~stfS~g~--~rl~~~~~l~~~~~LlLLD---Ep~~glD~--~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                          .+..+.-..  .++...+. -.+++.|++|   .+....|.  ..+..+.. ++..+++.|+|+|+|||+.+
T Consensus        95 ~~~~~~~~~~l~~~l~~i~~~ls-~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~-Li~~L~~~g~TvLLtsh~~~  168 (484)
T TIGR02655        95 EGQDVVGGFDLSALIERINYAIR-KYKAKRVSIDSVTAVFQQYDAVSVVRREIFR-LVARLKQIGVTTVMTTERIE  168 (484)
T ss_pred             ccccccccCCHHHHHHHHHHHHH-HhCCcEEEEeehhHhhhhcCchHHHHHHHHH-HHHHHHHCCCEEEEEecCcc
Confidence                011122111  12211111 2467888888   33334443  34455655 77888888999999999864

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.00027  Score=76.27  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=60.8

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhh-h-h-hhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccc
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASL-M-S-KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF  415 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~-a-~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stf  415 (623)
                      .++..+..| .+++++||||+||||++..++-... . . ....++..+. .+++..+++-   ..+|..-..-..... 
T Consensus       129 ~~~~~~~~g-~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~-~R~ga~EqL~~~a~~~gv~~~~~~~~~~-  205 (374)
T PRK14722        129 SEDALMERG-GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS-YRIGGHEQLRIFGKILGVPVHAVKDGGD-  205 (374)
T ss_pred             CCCccccCC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc-ccccHHHHHHHHHHHcCCceEecCCccc-
Confidence            455667788 8999999999999999999943322 2 1 1234555554 3555555543   233432111111112 


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEeCCCCC-CCHHHHHHHH
Q 006974          416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVALA  453 (623)
Q Consensus       416 S~g~~rl~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~l~  453 (623)
                            +..++....+.++||+|.||.. .|......+.
T Consensus       206 ------l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La  238 (374)
T PRK14722        206 ------LQLALAELRNKHMVLIDTIGMSQRDRTVSDQIA  238 (374)
T ss_pred             ------HHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHH
Confidence                  2334445577899999999866 3554444443

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.71  E-value=0.00042  Score=75.01  Aligned_cols=120  Identities=17%  Similarity=0.196  Sum_probs=66.7

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhh-hhhhhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD  424 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~rl~~  424 (623)
                      +.+| .++.|.|++|+|||||+.+++.. ........|+..+.  ...-+..-..++|... .+. ......  ...+..
T Consensus        79 i~~G-slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE--s~~qi~~Ra~rlg~~~~~l~-l~~e~~--le~I~~  152 (372)
T cd01121          79 LVPG-SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE--SPEQIKLRADRLGISTENLY-LLAETN--LEDILA  152 (372)
T ss_pred             ccCC-eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc--CHHHHHHHHHHcCCCcccEE-EEccCc--HHHHHH
Confidence            5567 89999999999999999998322 11112345654443  1222222234555432 111 111111  112221


Q ss_pred             HHHhcCCCcEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          425 ILELVSRESLVLIDEIGSG----TD-----PSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~g----lD-----~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      .. ...+|++|++|+..+-    +|     ......+...+.+..++.+.++|++.|-
T Consensus       153 ~i-~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv  209 (372)
T cd01121         153 SI-EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV  209 (372)
T ss_pred             HH-HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            11 2358999999997432    22     2223344454677777788999999885

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00059  Score=79.41  Aligned_cols=104  Identities=19%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh--hhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccc
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTF  415 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stf  415 (623)
                      +.++.+..| ++++++||||+||||++..+ +......  +...++..+. ..++.++++.   ..+|..-..-.     
T Consensus       177 ~~~~~~~~g-~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~-----  249 (767)
T PRK14723        177 DEDALLAQG-GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVK-----  249 (767)
T ss_pred             CCCcccCCC-eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccC-----
Confidence            345556667 89999999999999999999 4433221  1234566654 4666666553   23333211111     


Q ss_pred             cHHHHHHHHHHHhcCCCcEEEEeCCCCC-CCHHHHHHHHH
Q 006974          416 SGHISRIVDILELVSRESLVLIDEIGSG-TDPSEGVALAT  454 (623)
Q Consensus       416 S~g~~rl~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~l~~  454 (623)
                      +  ...+..++..+.+.++||+|=||+. .|......+..
T Consensus       250 ~--~~~l~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~~  287 (767)
T PRK14723        250 D--AADLRFALAALGDKHLVLIDTVGMSQRDRNVSEQIAM  287 (767)
T ss_pred             C--HHHHHHHHHHhcCCCEEEEeCCCCCccCHHHHHHHHH
Confidence            1  1234444555567799999988844 56554444433

>TIGR00152 dephospho-CoA kinase

Probab=97.62  E-value=8.5e-05  Score=72.57  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-------CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-------PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI  425 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-------~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~  425 (623)
                      +++|||.-||||||+.+.+.-.     .|+.+-....       ..-+.+..+...+|.. .++     -.|...|..++
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~-----~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~-i~~-----~~g~idr~~L~   69 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADK-----YHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQ-ILN-----EDGELDRKALG   69 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh-----cCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHH-HhC-----CCCCCCHHHHH
Confidence            4799999999999999988211     1122221110       0113355666666621 111     12444578888


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh---HHhhccccce
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD---LSCLKDKDTR  485 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~---l~~~~~~~~~  485 (623)
                      .....+|..+..+|  +.++|.-...+...+ ..+...+.++|+.+|.+.   +..+|+.++.
T Consensus        70 ~~vf~~~~~~~~le--~ilhP~i~~~i~~~i-~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~  129 (188)
T TIGR00152        70 ERVFNDPEELKWLN--NLLHPLIREWMKKLL-AQFQSKLAYVLLDVPLLFENKLRSLCDRVIV  129 (188)
T ss_pred             HHHhCCHHHHHHHH--HhhCHHHHHHHHHHH-HHhhcCCCEEEEEchHhhhCCcHHhCCEEEE
Confidence            88888998877776  889999999988744 444444578999999864   3445555433

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.62  E-value=0.00023  Score=73.14  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++..+..+..+++|+||||+||||+++.+
T Consensus        34 ~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l   63 (269)
T TIGR03015        34 YLEYGLSQREGFILITGEVGAGKTTLIRNL   63 (269)
T ss_pred             HHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence            344445555358999999999999999998

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.60  E-value=0.00076  Score=67.51  Aligned_cols=127  Identities=16%  Similarity=0.203  Sum_probs=66.5

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCc-hhhhccc---ccc
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNL---STF  415 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~---stf  415 (623)
                      ++.| +++.|+||+|+||||++.+++......       ....|+-.+.......+.++....+.. +.+..++   ...
T Consensus        16 ~~~g-~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~   94 (226)
T cd01393          16 IPTG-RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY   94 (226)
T ss_pred             CcCC-cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence            5567 899999999999999999984443322       222455544322222233444443322 1111111   112


Q ss_pred             cHHHH-H-HHHHHH--hcCCCcEEEEeCCCCCCC--------HHHHHH----HHHHHHHHHhcCCcEEEEEcCch
Q 006974          416 SGHIS-R-IVDILE--LVSRESLVLIDEIGSGTD--------PSEGVA----LATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       416 S~g~~-r-l~~~~~--l~~~~~LlLLDEp~~glD--------~~~~~~----l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +.++. . +..+..  ...++++|++|=.+.=..        ..++..    +...+.....+.++++|+++|-.
T Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~  169 (226)
T cd01393          95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR  169 (226)
T ss_pred             CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence            22222 1 222211  135788999999875321        122222    23334444456788999988864

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00087  Score=72.37  Aligned_cols=85  Identities=18%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHH---HcCCchhhhcccccccHHHHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      .+++|+||||+||||++..++.... ......++-++. .++..++++-.   .+|..-..     ..+.  ..+..++.
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt-~RiaAvEQLk~yae~lgipv~v-----~~d~--~~L~~aL~  313 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIA-----VRDE--AAMTRALT  313 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHhhhcCCcEEe-----cCCH--HHHHHHHH
Confidence            6899999999999999999953221 111223555554 34555666543   22321110     1111  12222322


Q ss_pred             -h--cCCCcEEEEeCCCCCC
Q 006974          428 -L--VSRESLVLIDEIGSGT  444 (623)
Q Consensus       428 -l--~~~~~LlLLDEp~~gl  444 (623)
                       +  ..+.++||+|-||+.-
T Consensus       314 ~lk~~~~~DvVLIDTaGRs~  333 (436)
T PRK11889        314 YFKEEARVDYILIDTAGKNY  333 (436)
T ss_pred             HHHhccCCCEEEEeCccccC
Confidence             2  2357999999888744

>PRK06526 transposase; Provisional

Probab=97.57  E-value=0.00026  Score=72.74  Aligned_cols=104  Identities=22%  Similarity=0.276  Sum_probs=59.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHh
Q 006974          349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL  428 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l  428 (623)
                      .+ +.++|+||.|+|||+|...+|.-..  +.|.-      +.+.-...++..+....    ...       .+...+..
T Consensus        97 ~~-~nlll~Gp~GtGKThLa~al~~~a~--~~g~~------v~f~t~~~l~~~l~~~~----~~~-------~~~~~l~~  156 (254)
T PRK06526         97 GK-ENVVFLGPPGTGKTHLAIGLGIRAC--QAGHR------VLFATAAQWVARLAAAH----HAG-------RLQAELVK  156 (254)
T ss_pred             cC-ceEEEEeCCCCchHHHHHHHHHHHH--HCCCc------hhhhhHHHHHHHHHHHH----hcC-------cHHHHHHH
Confidence            44 6799999999999999999954332  12311      11111223333332110    001       11112223


Q ss_pred             cCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          429 VSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       429 ~~~~~LlLLDEp~~g-lD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ..++++||+||++.- .++.....+.. +++...++ ..+|++|+..
T Consensus       157 l~~~dlLIIDD~g~~~~~~~~~~~L~~-li~~r~~~-~s~IitSn~~  201 (254)
T PRK06526        157 LGRYPLLIVDEVGYIPFEPEAANLFFQ-LVSSRYER-ASLIVTSNKP  201 (254)
T ss_pred             hccCCEEEEcccccCCCCHHHHHHHHH-HHHHHHhc-CCEEEEcCCC
Confidence            467899999999864 56666666666 55544444 4578888874

>PRK06893 DNA replication initiation factor; Validated

Probab=97.56  E-value=0.00037  Score=70.42  Aligned_cols=94  Identities=17%  Similarity=0.337  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcC
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS  430 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~  430 (623)
                      ..+.|.||.|+|||+|+.++|-..... ....|++....      +                 .++.      .+.....
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~------~-----------------~~~~------~~~~~~~   90 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS------Q-----------------YFSP------AVLENLE   90 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh------h-----------------hhhH------HHHhhcc
Confidence            568999999999999999995432211 11123332210      0                 0000      1122345


Q ss_pred             CCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          431 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       431 ~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      +.++|+|||+.... +......+.. +++...+.+.++|++|++..
T Consensus        91 ~~dlLilDDi~~~~~~~~~~~~l~~-l~n~~~~~~~~illits~~~  135 (229)
T PRK06893         91 QQDLVCLDDLQAVIGNEEWELAIFD-LFNRIKEQGKTLLLISADCS  135 (229)
T ss_pred             cCCEEEEeChhhhcCChHHHHHHHH-HHHHHHHcCCcEEEEeCCCC
Confidence            77999999998865 4444455666 67777777777777666643

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.55  E-value=0.0013  Score=76.53  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.+.|+...+|..  .++|....+..+++|+||||+||||+|+++
T Consensus         6 l~l~nf~~~~~~~--~~~~~~~~~~~~~~i~G~Ng~GKttll~ai   48 (650)
T TIGR03185         6 LTLENFGPYRGRQ--TFDLSPSSPKPIILIGGLNGAGKTTLLDAI   48 (650)
T ss_pred             EEEeceEEEcCCc--eeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence            5677776655542  445555555459999999999999999999

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.54  E-value=0.00064  Score=67.33  Aligned_cols=123  Identities=22%  Similarity=0.238  Sum_probs=64.7

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchhhhcc---cccccHHH--H
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQN---LSTFSGHI--S  420 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~---~stfS~g~--~  420 (623)
                      ++.| .++.|+||+|+||||+.-+++.... ......|+..++ .....+.++....  .+....+   ...++...  .
T Consensus         9 i~~g-~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~--~~~~~~~i~~~~~~~~~~~~~   84 (209)
T TIGR02237         9 VERG-TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDR--PERALSNFIVFEVFDFDEQGV   84 (209)
T ss_pred             CCCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhC--hHHHhcCEEEEECCCHHHHHH
Confidence            4567 8999999999999999988743322 223456777654 1222222222211  0111000   01122111  1


Q ss_pred             HHHHHHHhc--CCCcEEEEeCCCCCCCHH------H-HHHH---HHHHHHHHhcCCcEEEEEcCc
Q 006974          421 RIVDILELV--SRESLVLIDEIGSGTDPS------E-GVAL---ATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       421 rl~~~~~l~--~~~~LlLLDEp~~glD~~------~-~~~l---~~all~~l~~~~~~vii~TH~  473 (623)
                      .+..+...+  .++++|++|-.++-....      + ...+   ...+....++.++++|+|+|-
T Consensus        85 ~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~  149 (209)
T TIGR02237        85 AIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQV  149 (209)
T ss_pred             HHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence            233333332  368999999998642211      0 1122   222444446778899999885

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.53  E-value=0.0003  Score=76.88  Aligned_cols=102  Identities=22%  Similarity=0.252  Sum_probs=56.4

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhce-eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHH--H
Q 006974          348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV--D  424 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~-~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~--~  424 (623)
                      .++ +.++|.||+|+|||++.|.++-.     .+. ++      .+..- .+.         .+.+.   .+.+.+.  +
T Consensus       177 ~~p-kgvLL~GppGTGKT~LAkalA~~-----l~~~fi------~i~~s-~l~---------~k~~g---e~~~~lr~lf  231 (398)
T PTZ00454        177 DPP-RGVLLYGPPGTGKTMLAKAVAHH-----TTATFI------RVVGS-EFV---------QKYLG---EGPRMVRDVF  231 (398)
T ss_pred             CCC-ceEEEECCCCCCHHHHHHHHHHh-----cCCCEE------EEehH-HHH---------HHhcc---hhHHHHHHHH
Confidence            344 56899999999999999999221     110 11      11100 011         01110   0112222  2


Q ss_pred             HHHhcCCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974          425 ILELVSRESLVLIDEI----------GSGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD  475 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp----------~~glD~~~~~~l~~all~~l~~----~~~~vii~TH~~~  475 (623)
                      ..+....|.+|++||+          .+|.|......+.. ++..+..    .+..+|++||+.+
T Consensus       232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~-LL~~ld~~~~~~~v~VI~aTN~~d  295 (398)
T PTZ00454        232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLE-LLNQMDGFDQTTNVKVIMATNRAD  295 (398)
T ss_pred             HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHH-HHHHhhccCCCCCEEEEEecCCch
Confidence            2334578999999993          44556555555554 5555432    2457899999875

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=0.0012  Score=73.70  Aligned_cols=100  Identities=23%  Similarity=0.297  Sum_probs=55.5

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh---hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccc-cccHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLS-TFSGHISRI  422 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~---a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~s-tfS~g~~rl  422 (623)
                      +..| ++++|+||+|+||||++..++.....   .+...++..+. ..++..+++...-..   +.-.+. ..+.  ..+
T Consensus       347 l~~G-~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt-yRigA~EQLk~ya~i---Lgv~v~~a~d~--~~L  419 (559)
T PRK12727        347 LERG-GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT-QRVGGREQLHSYGRQ---LGIAVHEADSA--ESL  419 (559)
T ss_pred             ccCC-CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc-ccccHHHHHHHhhcc---cCceeEecCcH--HHH
Confidence            4567 89999999999999999888432222   12334555553 344444444322111   000111 1111  133


Q ss_pred             HHHHHhcCCCcEEEEeCCCCC-CCHHHHHHHH
Q 006974          423 VDILELVSRESLVLIDEIGSG-TDPSEGVALA  453 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~l~  453 (623)
                      ..++....+.++||+|.|+.+ .|......+.
T Consensus       420 ~~aL~~l~~~DLVLIDTaG~s~~D~~l~eeL~  451 (559)
T PRK12727        420 LDLLERLRDYKLVLIDTAGMGQRDRALAAQLN  451 (559)
T ss_pred             HHHHHHhccCCEEEecCCCcchhhHHHHHHHH
Confidence            344444567899999999875 4544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	623
1nne_A	765	Crystal Structure Of The Muts-adpbef3-dna Complex L		3e-21
1ewq_A	765	Crystal Structure Taq Muts Complexed With A Heterod		3e-19
1fw6_A	768	Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com		3e-19
1ewr_A	649	Crystal Structure Of Taq Muts Length = 649		3e-19
1ng9_A	800	E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt		1e-18
1wbb_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		2e-18
1oh5_A	800	The Crystal Structure Of E. Coli Muts Binding To Dn		2e-18
1wbd_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		2e-18
1wb9_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		2e-18
3thw_B	918	Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo		3e-18
2o8b_B	1022	Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M		5e-18
2o8b_A	934	Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M		7e-18
2o8e_A	934	Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR,		7e-18
3k0s_A	799	Crystal Structure Of E.Coli Dna Mismatch Repair Pro		8e-18
1e3m_A	800	The Crystal Structure Of E. Coli Muts Binding To Dn		3e-16

>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765

Iteration: 1
 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 105/196 (53%), Gaps = 3/196 (1%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           VP D+++  E  +V+ITGPN  GK+  ++   L +L+++ G ++PA+    LP FD I  
Sbjct: 568 VPNDLEMAHE--LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEA-HLPLFDGIYT 624
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
            IG    L    STF   +  +  IL+  +  SLVL+DE+G GT   +GVA+AT++ + L
Sbjct: 625 RIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
            +R    +  THY +L+ L     +  + A       L   +++L G    S  + +A  
Sbjct: 685 HERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAM 744
Query: 521 IGFDRKIIQRAQKLVE 536
            G  ++++ RA+ L++
Sbjct: 745 AGLPKEVVARARALLQ 760

>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 3/188 (1%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           VP D++   E  +V+ITGPN  GK+  ++   L +L+++ G ++PA+    LP FD I  
Sbjct: 568 VPNDLEXAHE--LVLITGPNXAGKSTFLRQTALIALLAQVGSFVPAEEA-HLPLFDGIYT 624
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
            IG    L    STF      +  IL+  +  SLVL+DE+G GT   +GVA+AT++ + L
Sbjct: 625 RIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
            +R    +  THY +L+ L     +  + A       L   +++L G    S  + +A  
Sbjct: 685 HERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAX 744
Query: 521 IGFDRKII 528
            G  ++++
Sbjct: 745 AGLPKEVV 752

>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 3/188 (1%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           VP D++   E  +V+ITGPN  GK+  ++   L +L+++ G ++PA+    LP FD I  
Sbjct: 568 VPNDLEXAHE--LVLITGPNXAGKSTFLRQTALIALLAQVGSFVPAEEA-HLPLFDGIYT 624
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
            IG    L    STF      +  IL+  +  SLVL+DE+G GT   +GVA+AT++ + L
Sbjct: 625 RIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
            +R    +  THY +L+ L     +  + A       L   +++L G    S  + +A  
Sbjct: 685 HERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAX 744
Query: 521 IGFDRKII 528
            G  ++++
Sbjct: 745 AGLPKEVV 752

>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 3/188 (1%)
Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           VP D++   E  +V+ITGPN  GK+  ++   L +L+++ G ++PA+    LP FD I  
Sbjct: 452 VPNDLEXAHE--LVLITGPNXAGKSTFLRQTALIALLAQVGSFVPAEEA-HLPLFDGIYT 508
Query: 401 DIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL 460
            IG    L    STF      +  IL+  +  SLVL+DE+G GT   +GVA+AT++ + L
Sbjct: 509 RIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 568
Query: 461 RDRVGLAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKS 520
            +R    +  THY +L+ L     +  + A       L   +++L G    S  + +A  
Sbjct: 569 HERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAX 628
Query: 521 IGFDRKII 528
            G  ++++
Sbjct: 629 AGLPKEVV 636

>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
           + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+     P  D I   +G 
Sbjct: 601 LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGA 659
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
              L    STF   ++   +IL   +  SLVL+DEIG+GT   +G++LA +  + L +++
Sbjct: 660 ADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGAGTSTYDGLSLAWACAENLANKI 719
Query: 465 -GLAVVTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKS 520
             L +  THY +L+ L +K     N   + +LE   T+   + +  G+   S  L +A  
Sbjct: 720 KALTLFATHYFELTQLPEKMEGVANVHLD-ALEHGDTIAFMHSVQDGAASKSYGLAVAAL 778
Query: 521 IGFDRKIIQRA-QKLVE 536
            G  +++I+RA QKL E
Sbjct: 779 AGVPKEVIKRARQKLRE 795

>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
           + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+     P  D I   +G 
Sbjct: 601 LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGA 659
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
              L    STF   ++   +IL   +  SLVL+DEIG GT   +G++LA +  + L +++
Sbjct: 660 ADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 719
Query: 465 -GLAVVTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKS 520
             L +  THY +L+ L +K     N   + +LE   T+   + +  G+   S  L +A  
Sbjct: 720 KALTLFATHYFELTQLPEKMEGVANVHLD-ALEHGDTIAFMHSVQDGAASKSYGLAVAAL 778
Query: 521 IGFDRKIIQRA-QKLVE 536
            G  +++I+RA QKL E
Sbjct: 779 AGVPKEVIKRARQKLRE 795

>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
           + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+     P  D I   +G 
Sbjct: 601 LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGA 659
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
              L    STF   ++   +IL   +  SLVL+DEIG GT   +G++LA +  + L +++
Sbjct: 660 ADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 719
Query: 465 -GLAVVTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKS 520
             L +  THY +L+ L +K     N   + +LE   T+   + +  G+   S  L +A  
Sbjct: 720 KALTLFATHYFELTQLPEKMEGVANVHLD-ALEHGDTIAFMHSVQDGAASKSYGLAVAAL 778
Query: 521 IGFDRKIIQRA-QKLVE 536
            G  +++I+RA QKL E
Sbjct: 779 AGVPKEVIKRARQKLRE 795

>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
           + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+     P  D I   +G 
Sbjct: 601 LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGA 659
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
              L    STF   ++   +IL   +  SLVL+DEIG GT   +G++LA +  + L +++
Sbjct: 660 ADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 719
Query: 465 -GLAVVTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKS 520
             L +  THY +L+ L +K     N   + +LE   T+   + +  G+   S  L +A  
Sbjct: 720 KALTLFATHYFELTQLPEKMEGVANVHLD-ALEHGDTIAFMHSVQDGAASKSYGLAVAAL 778
Query: 521 IGFDRKIIQRA-QKLVE 536
            G  +++I+RA QKL E
Sbjct: 779 AGVPKEVIKRARQKLRE 795

>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
           + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+     P  D I   +G 
Sbjct: 601 LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGA 659
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
              L    STF   ++   +IL   +  SLVL+DEIG GT   +G++LA +  + L +++
Sbjct: 660 ADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 719
Query: 465 -GLAVVTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKS 520
             L +  THY +L+ L +K     N   + +LE   T+   + +  G+   S  L +A  
Sbjct: 720 KALTLFATHYFELTQLPEKMEGVANVHLD-ALEHGDTIAFMHSVQDGAASKSYGLAVAAL 778
Query: 521 IGFDRKIIQRA-QKLVE 536
            G  +++I+RA QKL E
Sbjct: 779 AGVPKEVIKRARQKLRE 795

>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 32/280 (11%)
Query: 322 VENSEMTVGSLSKGISDFPVPIDIKV-ECETRVVVITGPNTGGKTASMKTLGLASLMSKA 380
           ++N    V  +  G  D  VP +  + E   RV++ITGPN GGK++ +K + L ++M++ 
Sbjct: 643 IKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQI 702
Query: 381 GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEI 440
           G Y+PA+    +   D I   +G   ++ +  STF   ++   +I+   + +SLV++DE+
Sbjct: 703 GSYVPAEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDEL 761
Query: 441 GSGTDPSEGVALATSILQY-LRDRVGLAVVTTHYADLSCLK-----------------DK 482
           G GT   +G+A+A + L+Y +RD   L +  THY  +  L+                 + 
Sbjct: 762 GRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSED 821
Query: 483 DTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPER 542
           +++ +  A E   + +   Y+I  G    S  LN+AK      +I+++A           
Sbjct: 822 ESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKA----------- 870
Query: 543 QQHRKSELYQSLMEERRKLESQARTAASLHAEIMDLYRED 582
             H+  EL   +  +R++L+  A+     +A+ +  + E+
Sbjct: 871 -AHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEE 909

>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 117/254 (46%), Gaps = 37/254 (14%)
Query: 338  DFPVPIDIKVECE--------TRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH 389
            DF +P DI + CE           V++TGPN GGK+  M+  GL ++M++ G Y+PA+  
Sbjct: 769  DF-IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV- 826
Query: 390  PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEG 449
             RL   D +   +G    +    STF   +S    IL   +  SLVL+DE+G GT   +G
Sbjct: 827  CRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDG 886
Query: 450  VALATSILQYLRDRVGL-AVVTTHYADL---------------SCLKDKDTRFENAATEF 493
             A+A ++++ L + +    + +THY  L               +C+       EN   + 
Sbjct: 887  TAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM------VENECEDP 940
Query: 494  SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQ- 552
            S ET+   Y+ + G+   S   N A+      ++IQ+  +         Q  R   L++ 
Sbjct: 941  SQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLR---LFRE 997
Query: 553  -SLMEERRKLESQA 565
              L  ER  ++++A
Sbjct: 998  VCLASERSTVDAEA 1011

>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
           +P D+  E + ++  +ITGPN GGK+  ++  G+  LM++ G ++P ++   +   D IL
Sbjct: 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
           A +G   S  + +STF   +     IL   +++SL++IDE+G GT   +G  LA +I +Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSNALN 516
           +  ++G   +  TH+ +L+ L ++     N       + ETL   Y++  G    S  ++
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRAQK 533
           +A+   F + +I+ A++
Sbjct: 830 VAELANFPKHVIECAKQ 846

>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
Query: 341 VPIDIKVECETRVV-VITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
           +P D+  E + ++  +ITGPN GGK+  ++  G+  LM++ G ++P ++   +   D IL
Sbjct: 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES-AEVSIVDCIL 709
Query: 400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
           A +G   S  + +STF   +     IL   +++SL++IDE+G GT   +G  LA +I +Y
Sbjct: 710 ARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY 769
Query: 460 LRDRVG-LAVVTTHYADLSCLKDKDTRFEN--AATEFSLETLRPTYRILWGSTGDSNALN 516
           +  ++G   +  TH+ +L+ L ++     N       + ETL   Y++  G    S  ++
Sbjct: 770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIH 829
Query: 517 IAKSIGFDRKIIQRAQK 533
           +A+   F + +I+ A++
Sbjct: 830 VAELANFPKHVIECAKQ 846

>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
           + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+     P  D I   +G 
Sbjct: 600 LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP-IDRIFTRVGA 658
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
              L    STF   ++   +IL   +  SLVL++EIG GT   +G++LA +  + L +++
Sbjct: 659 ADDLASGRSTFMVEMTETANILHNATEYSLVLMNEIGRGTSTYDGLSLAWACAENLANKI 718
Query: 465 -GLAVVTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKS 520
             L +  THY +L+ L +K     N   + +LE   T+   + +  G+   S  L +A  
Sbjct: 719 KALTLFATHYFELTQLPEKMEGVANVHLD-ALEHGDTIAFMHSVQDGAASKSYGLAVAAL 777
Query: 521 IGFDRKIIQRA-QKLVE 536
            G  +++I+RA QKL E
Sbjct: 778 AGVPKEVIKRARQKLRE 794

>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 7/197 (3%)
Query: 345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGD 404
           + +  + R ++ITGPN GGK+   +   L +L +  G Y+PA+     P  D I   +G 
Sbjct: 601 LNLSPQRRXLIITGPNXGGKSTYXRQTALIALXAYIGSYVPAQKVEIGP-IDRIFTRVGA 659
Query: 405 HQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRV 464
              L    STF    +   +IL   +  SLVL DEIG GT   +G++LA +  + L +++
Sbjct: 660 ADDLASGRSTFXVEXTETANILHNATEYSLVLXDEIGRGTSTYDGLSLAWACAENLANKI 719
Query: 465 -GLAVVTTHYADLSCLKDKDTRFENAATEFSLE---TLRPTYRILWGSTGDSNALNIAKS 520
             L +  THY +L+ L +K     N   + +LE   T+   + +  G+   S  L +A  
Sbjct: 720 KALTLFATHYFELTQLPEKXEGVANVHLD-ALEHGDTIAFXHSVQDGAASKSYGLAVAAL 778
Query: 521 IGFDRKIIQRA-QKLVE 536
            G  +++I+RA QKL E
Sbjct: 779 AGVPKEVIKRARQKLRE 795

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	623
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	3e-21
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	5e-17
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	3e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	7e-16
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	5e-14
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934

 Score = 97.4 bits (243), Expect = 3e-21
 Identities = 76/344 (22%), Positives = 143/344 (41%), Gaps = 47/344 (13%)

Query: 227 IAEETAILSLLTAEIAKSEREIKYLMDRVLEID--LAFARAGFAQWMDGVCPILSSQSHV 284
              + AI+  +    +     ++ L D + ++D  ++FA       +  V P +      
Sbjct: 571 EEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAI----LE 626

Query: 285 SFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPID 344
                I ++  +H  +                         E+           F +P D
Sbjct: 627 KGQGRIILKASRHACV-------------------------EVQDEI------AF-IPND 654

Query: 345 IKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG 403
           +  E +     +ITGPN GGK+  ++  G+  LM++ G ++P +    +   D ILA +G
Sbjct: 655 VYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE-SAEVSIVDCILARVG 713

Query: 404 DHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
              S  + +STF   +     IL   +++SL++IDE+G GT   +G  LA +I +Y+  +
Sbjct: 714 AGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK 773

Query: 464 VG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPTYRILWGSTGDSNALNIAK 519
           +G   +  TH+ +L+ L ++     N    A     ETL   Y++  G    S  +++A+
Sbjct: 774 IGAFCMFATHFHELTALANQIPTVNNLHVTALTTE-ETLTMLYQVKKGVCDQSFGIHVAE 832

Query: 520 SIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLES 563
              F + +I+ A++    L  E  Q+        +ME   K   
Sbjct: 833 LANFPKHVIECAKQKALEL--EEFQYIGESQGYDIMEPAAKKCY 874

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022

 Score = 84.3 bits (209), Expect = 5e-17
 Identities = 71/369 (19%), Positives = 135/369 (36%), Gaps = 57/369 (15%)

Query: 230  ETAILSLLTAEIAKSEREIKYLMDRVLEID--LAFARAGFAQWMDGVCPILSSQSHVSFD 287
                +  L     K+ ++ +  ++ +  +D  L  A            P++         
Sbjct: 691  LKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPE--DTP 748

Query: 288  SSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKV 347
              + ++G +HP +     ++        N +    E  E   G                 
Sbjct: 749  PFLELKGSRHPCIT----KTFFGDDFIPNDILIGCEEEEQENGK---------------- 788

Query: 348  ECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIG--DH 405
                  V++TGPN GGK+  M+  GL ++M++ G Y+PA+   RL   D +   +G  D 
Sbjct: 789  ---AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAE-VCRLTPIDRVFTRLGASDR 844

Query: 406  QSLEQNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALATSILQY 459
              +    STF       V       IL   +  SLVL+DE+G GT   +G A+A ++++ 
Sbjct: 845  --IMSGESTF------FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE 896

Query: 460  LRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATEFSLETLRPT------YRILWGST 509
            L + +    + +THY  L     ++        A    +             Y+ + G+ 
Sbjct: 897  LAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGAC 956

Query: 510  GDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLMEERRKLESQARTAA 569
              S   N A+      ++IQ+  +       E + ++   L++ +     +    A    
Sbjct: 957  PKSYGFNAARLANLPEEVIQKGHRKAREF--E-KMNQSLRLFREVCLASERSTVDAEAVH 1013

Query: 570  SLHAEIMDL 578
             L   I +L
Sbjct: 1014 KLLTLIKEL 1022

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918

 Score = 81.9 bits (203), Expect = 3e-16
 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 32/263 (12%)

Query: 341 VPIDIKVECET-RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLIL 399
           VP +  +  ++ RV++ITGPN GGK++ +K + L ++M++ G Y+PA+    +   D I 
Sbjct: 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAE-EATIGIVDGIF 720

Query: 400 ADIGDHQSLEQNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALA 453
             +G   ++ +  STF      +       +I+   + +SLV++DE+G GT   +G+A+A
Sbjct: 721 TRMGAADNIYKGRSTF------MEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIA 774

Query: 454 TSILQYLRDRVG-LAVVTTHYADLSCLKDK-DTRFEN---AATEFSLETLRPT------- 501
            + L+Y    V  L +  THY  +  L+     +  N          E+           
Sbjct: 775 YATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVP 834

Query: 502 ------YRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLM 555
                 Y+I  G    S  LN+AK      +I+++A    + L       RK   Y + +
Sbjct: 835 DFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKRLKYFAKL 894

Query: 556 EERRKLESQARTAASLHAEIMDL 578
                 +   +     + E    
Sbjct: 895 WTMHNAQDLQKWTEEFNMEETQT 917

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 5e-16
 Identities = 79/586 (13%), Positives = 179/586 (30%), Gaps = 191/586 (32%)

Query: 83  TEAAELD---GDSLQRYSPLLELLKN--CNFLTELEEKIGFCIDCKLLIILDRASED--- 134
            E  E      D L  +      + N  C  + ++ + I    +   +I+   A      
Sbjct: 9   FETGEHQYQYKDILSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 135 -LELIRAERKRNMEN-LDSLLKK----VAAQIFQAGGIDKPLITKR----RSRMCVGIKA 184
               + ++++  ++  ++ +L+     + + I +       ++T+     R R+    + 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 185 SHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETAIL---------S 235
             KY        NVS       ++P        +++R +  E+     +L         +
Sbjct: 126 FAKY--------NVSR------LQPY-------LKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 236 LLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD-GVC------------------P 276
            +  ++  S +           +        F  W++   C                  P
Sbjct: 165 WVALDVCLSYK-----------VQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 277 ILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLK--SDVENSEMTVGSLSK 334
             +S+S  S +  + I  I+        LR L  +    N L    +V+N++        
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQA------ELRRLLKSKPYENCLLVLLNVQNAKA------- 258

Query: 335 GISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPW 394
             + F    ++   C  ++++ T      +   +                          
Sbjct: 259 -WNAF----NLS--C--KILLTT------RFKQV-------------------------- 277

Query: 395 FDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVA--- 451
            D + A    H SL+ +  T +       ++  L+ +    L  +      P E +    
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD-----EVKSLLLK---YL--DCRPQDLPREVLTTNP 327

Query: 452 LATSIL-----------QYLRDRVGLAVVTTHYADLSCLKDKDTR--FENAATEFSLETL 498
              SI+              +      + T   + L+ L+  + R  F+  +  F     
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAH 386

Query: 499 RP--TYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPERQQHRKSELYQSLME 556
            P     ++W     S+ + +       +        LVE+    + +     +    +E
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNK--LHKY------SLVEK----QPKESTISIPSIYLE 434

Query: 557 ERRKLESQARTAASLHAEIMDLYR-------EDSTSASISVYRYQF 595
            + KLE++     +LH  I+D Y        +D     +  Y Y  
Sbjct: 435 LKVKLENEY----ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 68/492 (13%), Positives = 147/492 (29%), Gaps = 135/492 (27%)

Query: 13  FGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGI--LNSAVSGQLLSPSEICAVRR 70
            GK+             AL +  S  +    ++    I  LN        SP  +     
Sbjct: 161 SGKT-----------WVALDVCLSYKV-QCKMDF--KIFWLNL---KNCNSPETV----- 198

Query: 71  TLRAVNNVWKKLTEAAELDGDSLQRY--------SPLLELLKNCNFLTEL-------EEK 115
            L  +  +  ++        D             + L  LLK+  +   L         K
Sbjct: 199 -LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 116 I--GFCIDCKLLII-LDRA-SEDLELIRAERKRNMENLDSLLKKVAAQIF---------- 161
               F + CK+L+    +  ++ L            +  +L       +           
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 162 ---QAGGIDKPLITKRRSRMCVGIKASHK--------YLLPDGIALNVSSSGATYFMEPK 210
              +    + P            I  S +        +   +   L      +   +EP 
Sbjct: 318 LPREVLTTN-PRR-------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 211 GAVEFNNMEVRLS----NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAG 266
              E+  M  RLS    ++ I      LSL+  ++   + ++  +++++ +  L   +  
Sbjct: 370 ---EYRKMFDRLSVFPPSAHIPTIL--LSLIWFDV--IKSDVMVVVNKLHKYSLV-EK-- 419

Query: 267 FAQWMDGVCPILSSQSHVSFDSSINIEGIK--HPLLLGSSLRSLSAASSNSNPLKSD--- 321
             Q  +    I      +  +  + +E     H  ++       +  S +  P   D   
Sbjct: 420 --QPKESTISIP----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 322 ----------VENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL 371
                     +E+ E  +        DF   ++ K+            +    TA   + 
Sbjct: 474 YSHIGHHLKNIEHPER-MTLFRMVFLDFRF-LEQKIR-----------HDS--TAWNASG 518

Query: 372 GLASLMSKAGLYLP--AKNHPRLPWFDLILADIGDH-QSLEQNLSTFSGHISRIVDILEL 428
            + + + +   Y P    N P+   ++ ++  I D    +E+NL       S+  D+L +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPK---YERLVNAILDFLPKIEENL-----ICSKYTDLLRI 570

Query: 429 -VSRESLVLIDE 439
            +  E   + +E
Sbjct: 571 ALMAEDEAIFEE 582

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800

 Score = 80.2 bits (199), Expect = 7e-16
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 30/214 (14%)

Query: 341 VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILA 400
           +   + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+    +   D I  
Sbjct: 597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQ-KVEIGPIDRIFT 655

Query: 401 DIGDHQSLEQNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALAT 454
            +G    L    STF      +V      +IL   +  SLVL+DEIG GT   +G++LA 
Sbjct: 656 RVGAADDLASGRSTF------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAW 709

Query: 455 SILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFEN---AATE------FSLETLRPTYRI 504
           +  + L +++  L +  THY +L+ L +K     N    A E      F    +     +
Sbjct: 710 ACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAF----MH---SV 762

Query: 505 LWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL 538
             G+   S  L +A   G  +++I+RA++ +  L
Sbjct: 763 QDGAASKSYGLAVAALAGVPKEVIKRARQKLREL 796

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765

 Score = 74.4 bits (184), Expect = 5e-14
 Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 77/329 (23%)

Query: 230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSS 289
           E  +   +     +    ++     + E+D+  A A  A     V P         F   
Sbjct: 499 EEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRP--------RFGDR 550

Query: 290 INIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVEC 349
           + I   +HP+                      VE              +F VP D+++  
Sbjct: 551 LQIRAGRHPV----------------------VERRT-----------EF-VPNDLEMA- 575

Query: 350 ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLE 409
              +V+ITGPN  GK+  ++   L +L+++ G ++PA+    LP FD I   IG    L 
Sbjct: 576 -HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE-EAHLPLFDGIYTRIGASDDLA 633

Query: 410 QNLSTFSGHISRIV------DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR 463
              STF      +V       IL+  +  SLVL+DE+G GT   +GVA+AT++ + L +R
Sbjct: 634 GGKSTF------MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER 687

Query: 464 VGLAVVTTHYADLSCLKDKDTRFEN---AATE------FSLETLRPTYRILWGSTGDSNA 514
               +  THY +L+ L     R +N   AA E      F         ++L G    S  
Sbjct: 688 RAYTLFATHYFELTALGLP--RLKNLHVAAREEAGGLVF----YH---QVLPGPASKSYG 738

Query: 515 LNIAKSIGFDRKIIQRAQKLVERLRPERQ 543
           + +A   G  ++++ RA+ L++ +    +
Sbjct: 739 VEVAAMAGLPKEVVARARALLQAM--AAR 765

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 11/40 (27%)

Query: 7  QKAQIPFGKSLEESQKLLNQTSA-ALAMMQSQPLDLSTIE 45
          +K  +   K L+ S KL    SA ALA+        +T+E
Sbjct: 18 EKQAL---KKLQASLKLYADDSAPALAIK-------ATME 47

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 23/50 (46%)

Query: 552 QSLMEERRKLESQARTAASLHAEIMDLYREDSTSASISVYRYQFAVTSTL 601
           Q+L    +KL++      SL      LY +DS  A         A+ +T+
Sbjct: 20  QAL----KKLQA------SL-----KLYADDSAPA--------LAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	623
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	100.0
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	100.0
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	100.0
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	100.0
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.96
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.96
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.96
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.96
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.96
1g6h_A	257	High-affinity branched-chain amino acid transport	99.96
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.96
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.95
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.95
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.95
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.95
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.95
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.95
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.95
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.94
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.94
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.94
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.94
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.92
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.91
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.9
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.9
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.9
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.9
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.9
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.89
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.89
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.88
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.86
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.85
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.84
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.82
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.81
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.8
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.79
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.79
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.79
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.78
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.77
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.77
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.76
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.72
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.67
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.66
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.64
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.63
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.54
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.51
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.51
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.47
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.45
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.43
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.43
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.4
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.4
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.39
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.37
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.37
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.37
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.35
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.35
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.33
2og2_A	359	Putative signal recognition particle receptor; nuc	99.31
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.29
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.21
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.21
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.19
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.17
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.17
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.17
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.17
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.16
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.15
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.15
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.12
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.11
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.09
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.01
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.01
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.99
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.97
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.96
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.93
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.93
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.9
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.81
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.78
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.78
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.77
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.74
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.72
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.7
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.7
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.63
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.62
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.61
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.61
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.52
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.43
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.42
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.37
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.33
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.31
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.31
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.3
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.29
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.28
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.23
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.12
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.1
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.05
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.05
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.05
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.0
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.98
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.98
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.94
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.89
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.86
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.8
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.79
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.77
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.73
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.7
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.69
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.68
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.68
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.67
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.66
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.66
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.66
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.65
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.63
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.63
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.62
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.56
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.53
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.53
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.53
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.53
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.52
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.49
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.46
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.45
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.42
3bos_A	242	Putative DNA replication factor; P-loop containing	97.4
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.37
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.35
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.34
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.34
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.34
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.29
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.29
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.28
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.27
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.24
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.23
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.22
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.21
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.21
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.12
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.12
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.1
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.07
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.05
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.04
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.04
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.03
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.03
2qgz_A	308	Helicase loader, putative primosome component; str	97.03
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.03
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.03
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.0
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.97
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.97
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.97
3io5_A	333	Recombination and repair protein; storage dimer, i	96.89
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.88
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.88
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.86
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.86
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.85
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.85
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.82
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	96.76
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.76
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.76
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.73
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.68
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.67
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.66
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.65
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.62
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.6
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.56
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.56
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.53
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.53
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.51
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.5
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.49
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.49
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.48
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.46
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.4
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.37
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.35
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.35
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.34
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.29
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.29
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.22
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.17
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.15
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.13
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.13
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.12
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.09
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.09
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.02
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.02
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.99
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.98
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.97
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.93
3co5_A	143	Putative two-component system transcriptional RES	95.91
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.86
3ice_A	422	Transcription termination factor RHO; transcriptio	95.86
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.69
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.67
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.64
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.64
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.62
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.56
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.56
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.47
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.47
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.45
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.45
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.39
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.36
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.26
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.26
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.25
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.23
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.18
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.16
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.16
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.12
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.06
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.04
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.02
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.01
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.0
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.0
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.96
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.94
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.93
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.92
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.9
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	94.9
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.81
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.81
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.8
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.78
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	94.76
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.76
3pvs_A	447	Replication-associated recombination protein A; ma	94.75
1via_A	175	Shikimate kinase; structural genomics, transferase	94.75
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.72
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.65
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.61
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.54
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.54
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	94.48
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.48
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.47
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.4
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.32
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.31
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.24
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.2
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.18
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.16
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.13
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	94.11
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.08
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.05
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	94.03
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.03
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.03
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	93.99
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	93.92
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.91
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.89
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.8
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.8
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.8
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	93.79
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.67
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	93.66
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.48
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.45
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	93.38
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.37
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.35
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	93.33
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.3
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.24
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	93.18
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.15
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	93.11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.06
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.05
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.02
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	92.94
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	92.91
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	92.82
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	92.8
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	92.79
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	92.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	92.63
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.62
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	92.6
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	92.53
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	92.53
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	92.49
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	92.41
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.41
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.4
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	92.33
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.31
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.3
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.29
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.29
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.22
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	92.15
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.06
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	92.02
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	91.89
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.81
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.81
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	91.8
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.77
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.75
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	91.74
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	91.65
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	91.64
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.58
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.57
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	91.57
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	91.56
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	91.56
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	91.54
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.47
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	91.37
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.36
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.34
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.32
2xxa_A	433	Signal recognition particle protein; protein trans	91.3
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	91.26
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.23
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	91.17
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.16
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.15
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	91.11
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.04
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	90.97
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	90.94
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	90.88
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	90.85
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.8
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	90.77
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	90.76
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	90.75
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	90.66
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	90.65
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.55
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	90.53
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	90.52
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	90.52
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	90.51
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.5
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	90.49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.48
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	90.48
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	90.43
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.41
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	90.4
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	90.31
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	90.28
1nrj_B	218	SR-beta, signal recognition particle receptor beta	90.25
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	90.21
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	90.2
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.2
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	90.11
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.09
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.09
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	90.08
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	90.03
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	90.03
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	90.03
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	90.01
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	89.99
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	89.99
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	89.96
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	89.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	89.82
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	89.81
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	89.8
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	89.76
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	89.74
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	89.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	89.72
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	89.67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	89.52
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	89.4
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	89.37
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	89.34
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	89.31
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	89.23
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	89.21
3llu_A	196	RAS-related GTP-binding protein C; structural geno	89.2
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	89.03
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	89.02
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	89.01
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	88.99
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	88.96
2hf9_A	226	Probable hydrogenase nickel incorporation protein	88.94
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	88.91
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	88.86
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	88.83
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	88.8
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	88.79
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	88.79
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	88.76
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	88.74
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	88.73
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	88.72
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	88.68
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	88.66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	88.54
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	88.52
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	88.51
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	88.51
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	88.5
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.48
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	88.46
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	88.44
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	88.4
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	88.34
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	88.25
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	88.23
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	88.22
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	88.11
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	88.1
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.98

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=100.00  E-value=2.8e-70  Score=635.61  Aligned_cols=482  Identities=21%  Similarity=0.293  Sum_probs=414.3

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK   80 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~l~~   80 (623)
                      ||+|+|++|.+.|+.|.++|++||+.|+++..+......+|++++|+++++.|+..|. +++.||..++.+|..+..++.
T Consensus       302 ~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~l~~  380 (800)
T 1wb9_A          302 MGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRT-ARPRDLARMRHAFQQLPELRA  380 (800)
T ss_dssp             HHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSHHHHHHHHHHTC-CCHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999998733355678999999999999999885 599999999999999999999


Q ss_pred             HHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHHHHH
Q 006974           81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLL  153 (623)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~~~l  153 (623)
                      ++...         ..+.|..+...+++++++.+.|.++|+++       ++.|+|+||++|+.+|+.+++.++.+.++.
T Consensus       381 ~l~~~---------~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~  451 (800)
T 1wb9_A          381 QLETV---------DSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE  451 (800)
T ss_dssp             HHHSC---------CCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhc---------CcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88642         13567777788888999999999999976       368999999999999999988888777766


Q ss_pred             HHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHH
Q 006974          154 KKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA  232 (623)
Q Consensus       154 ~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~  232 (623)
                      .+..    ...++....+.+.+ .+|||+|+.+++..+|+||++.+|.+|+++|++|+ ++++++++.++..++..+|.+
T Consensus       452 ~~~~----~~~~~~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~  526 (800)
T 1wb9_A          452 VRER----ERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQ  526 (800)
T ss_dssp             HHHH----HHHTCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH----HHhCCCceEEEecCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            5532    22344333333322 36999999999999999999999999999999998 899999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhccccc
Q 006974          233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAAS  312 (623)
Q Consensus       233 il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~  312 (623)
                      |+.+|++.+..+.+.|..+.+.+++||+++|+|.+|.+++||+|.|++++      .+.|++||||+++.. ..      
T Consensus       527 i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~~------  593 (800)
T 1wb9_A          527 LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP------GIRITEGRHPVVEQV-LN------  593 (800)
T ss_dssp             HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSS------CEEEEEECCTTHHHH-CS------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccEECCCC------CEEEEeccccEEEcc-CC------
Confidence            99999999999999999999999999999999999999999999998753      699999999999421 10      


Q ss_pred             CCCCCCCCCCCCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC
Q 006974          313 SNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP  390 (623)
Q Consensus       313 ~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~  390 (623)
                                               +.++  +++|. ++| ++++|+||||||||||||+++.+.++++.|+++|+.. .
T Consensus       594 -------------------------~~~vlndisl~-~~g-~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~-~  645 (800)
T 1wb9_A          594 -------------------------EPFIANPLNLS-PQR-RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-V  645 (800)
T ss_dssp             -------------------------SCCCCEEEEEC-SSS-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-E
T ss_pred             -------------------------Cceeeeccccc-CCC-cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhc-c
Confidence                                     1245  45555 567 8999999999999999999999999999999999875 6


Q ss_pred             CccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEE
Q 006974          391 RLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVV  469 (623)
Q Consensus       391 ~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii  469 (623)
                      .++++++++.++|..+++..+.|+||++|+++..++..+++|+||||||||+|||+.++.+++.++++++.+ .++++|+
T Consensus       646 ~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~  725 (800)
T 1wb9_A          646 EIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLF  725 (800)
T ss_dssp             EECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEE
Confidence            778888899999999999999999999999999999999999999999999999999999998889999987 4899999


Q ss_pred             EcCchhHHhhccccceeeCceEEEecC--ccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhh
Q 006974          470 TTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERL  538 (623)
Q Consensus       470 ~TH~~~l~~~~~~~~~i~~g~~~~~~~--~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~  538 (623)
                      +|||+++..+|++...+.|++|.++..  .+.|+|++..|.++.|||+++|+++|+|++|+++|++.+..+
T Consensus       726 ~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~l  796 (800)
T 1wb9_A          726 ATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL  796 (800)
T ss_dssp             ECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            999999988999999999999998754  599999999999999999999999999999999999988754

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=100.00  E-value=6.6e-64  Score=586.84  Aligned_cols=490  Identities=21%  Similarity=0.267  Sum_probs=380.9

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH----HHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA----MMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN   76 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~----~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~   76 (623)
                      ||+|+||+|+..|+.+.++|+.||+.++++..    +.....-.|++++|++|++.|+..|++ +|.||..++.+|..+.
T Consensus       355 mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~-~~~dl~~l~~~l~~l~  433 (918)
T 3thx_B          355 FGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC-STQEFFLIVKTLYHLK  433 (918)
T ss_dssp             HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCcC-CHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998752    222344578999999999999999987 8999999999998776


Q ss_pred             -HHHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCC-cCHHHHHHHHHHHHHHH
Q 006974           77 -NVWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDR-ASEDLELIRAERKRNME  147 (623)
Q Consensus        77 -~l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~-as~~L~~iR~~~~~~~~  147 (623)
                       .++..+.....     ....+.|..++..++.+.+....+...|+++       ++.+.+. ..|+|+.+|+..+....
T Consensus       434 ~~l~~~l~~~~~-----~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  508 (918)
T 3thx_B          434 SEFQAIIPAVNS-----HIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID  508 (918)
T ss_dssp             HHHHHHHHHHHH-----TCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh-----hccCHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHH
Confidence             55554432111     0011233333332221111122333334321       1223332 36899999988888888


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcccccccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHH
Q 006974          148 NLDSLLKKVAAQIFQAGGIDKPLITKRRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEI  227 (623)
Q Consensus       148 ~l~~~l~~~~~~~~~~~~~~~~~i~~~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~  227 (623)
                      .+++.+.+.... ..  .....+++.+++||+|+|+.++...+|+.|+..++..+..+|++|+ ++++++++..++.+..
T Consensus       509 ~~~~~l~~~~~~-i~--~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpe-l~~~~~~~~~~~e~~~  584 (918)
T 3thx_B          509 EIRMHLQEIRKI-LK--NPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPF-IVENYRHLNQLREQLV  584 (918)
T ss_dssp             HHHHHHHHHHHH-HT--CTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hC--cccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHH-HHHHHHHHHHHHHHHH
Confidence            888777654322 11  1223567778889999999999999996665555555555788885 8899998887777766


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhh
Q 006974          228 AEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRS  307 (623)
Q Consensus       228 ~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~  307 (623)
                      ..|.+++.++...+..+...|..+++.+++|||++|+|.+|..++||+|.|++++      .|.|+++|||+++.. +..
T Consensus       585 ~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~------~i~i~~~rHP~le~~-~~~  657 (918)
T 3thx_B          585 LDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEER------KIVIKNGRHPVIDVL-LGE  657 (918)
T ss_dssp             HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSC------EEEEEEECCHHHHHH-TCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccCCC------cEEEEeccchhhhhh-hcc
Confidence            7777888889999999999999999999999999999999999999999998753      799999999998421 110


Q ss_pred             cccccCCCCCCCCCCCCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeec
Q 006974          308 LSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLP  385 (623)
Q Consensus       308 ~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp  385 (623)
                                                   ++.+|  +++|++++| ++++|+||||||||||||++|++.+|++.|+++|
T Consensus       658 -----------------------------~~~~V~ndvsl~~~~g-~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp  707 (918)
T 3thx_B          658 -----------------------------QDQYVPNNTDLSEDSE-RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP  707 (918)
T ss_dssp             -----------------------------CSSSCCEEEEECTTSC-CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred             -----------------------------CCceecccccccCCCC-eEEEEECCCCCchHHHHHHHHHHHHHhhcCcccc
Confidence                                         01245  666777788 9999999999999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 006974          386 AKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RV  464 (623)
Q Consensus       386 ~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~  464 (623)
                      +.. ..++.++++++++|..+++..++|+||+||++++.++..+++|+||||||||+||||.++.++++++++++.+ .|
T Consensus       708 a~~-~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g  786 (918)
T 3thx_B          708 AEE-ATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK  786 (918)
T ss_dssp             SSE-EEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             chh-hhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            975 6788888999999999999999999999999988888889999999999999999999999999889999865 68


Q ss_pred             cEEEEEcCchhHHhhccccce-eeCceEEEe----------------cCccccccccccCCCCCcHHHHHHHHCCCCHHH
Q 006974          465 GLAVVTTHYADLSCLKDKDTR-FENAATEFS----------------LETLRPTYRILWGSTGDSNALNIAKSIGFDRKI  527 (623)
Q Consensus       465 ~~vii~TH~~~l~~~~~~~~~-i~~g~~~~~----------------~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i  527 (623)
                      +++|++|||+++..++++... +.|++|.+.                .+.+.|+|++.+|.++.|||+++|+++|+|++|
T Consensus       787 ~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~v  866 (918)
T 3thx_B          787 SLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI  866 (918)
T ss_dssp             CEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHH
T ss_pred             CeEEEEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHH
Confidence            999999999999999998875 899999873                236999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 006974          528 IQRAQKLVERL  538 (623)
Q Consensus       528 ~~~a~~~~~~~  538 (623)
                      +++|++.+..+
T Consensus       867 i~rA~~~~~~L  877 (918)
T 3thx_B          867 LKKAAHKSKEL  877 (918)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999976643

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=100.00  E-value=8e-64  Score=578.42  Aligned_cols=468  Identities=22%  Similarity=0.291  Sum_probs=398.9

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHH---HhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~---~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      ||+|+|++|.+.|+.|.++|+.|++.++++...   ......+|++++|+++++.|+..|. +++.||..++.+|..+..
T Consensus       283 ~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~-~~~~dl~~l~~~l~~~~~  361 (765)
T 1ewq_A          283 PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGR-ASPKDLGALRRSLQILPE  361 (765)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999873   2355678999999999999999886 599999999999999988


Q ss_pred             HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLD  150 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~  150 (623)
                      ++.++.                  +...+.+++++.+.|.++|+++       ++.|+|++|++|+.+|+.+++..+.+.
T Consensus       362 l~~~l~------------------l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~  423 (765)
T 1ewq_A          362 LRALLG------------------EEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFL  423 (765)
T ss_dssp             HHHHHC------------------TTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH------------------HHhccccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            877653                  1234566788999999999865       357999999999999998887777776


Q ss_pred             HHHHHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 006974          151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE  229 (623)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~e  229 (623)
                      ++..+..    ...++....+.+.+ .+|+|+|+.+++..+|+.|++.+|.+|.++|++|+ +.++++++.++..++..+
T Consensus       424 ~~~~~~~----~~~~~~~l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~  498 (765)
T 1ewq_A          424 ELEERER----ERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRR  498 (765)
T ss_dssp             HHHHHHH----HHHCCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HHcCCCceEEEeccceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHH
Confidence            6655432    33344443333333 36999999999999997799999999999999998 999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccceecCCCCCCCcceEEEcccccCccccchhhhcc
Q 006974          230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMDGVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLS  309 (623)
Q Consensus       230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~  309 (623)
                      |.+|+.+|++.+..+.+.+..+.+.+++||+++|+|.+|..++||+|.+ +.       .|.++++|||+++.   .   
T Consensus       499 e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~-~~-------~i~i~~~rHP~le~---~---  564 (765)
T 1ewq_A          499 EEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF-GD-------RLQIRAGRHPVVER---R---  564 (765)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE-SS-------SEEEEEECCTTGGG---T---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCceeecc-CC-------cEEEEEeECceEcc---C---
Confidence            9999999999999999999999999999999999999999999999999 32       59999999999842   0   


Q ss_pred             cccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974          310 AASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH  389 (623)
Q Consensus       310 ~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~  389 (623)
                                                  +.++++++++. | ++++|+||||||||||||+++.+.++++.|.++|+.. 
T Consensus       565 ----------------------------~~~vl~disl~-g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~-  613 (765)
T 1ewq_A          565 ----------------------------TEFVPNDLEMA-H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE-  613 (765)
T ss_dssp             ----------------------------SCCCCEEEEES-S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-
T ss_pred             ----------------------------CceEeeeccCC-C-cEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhc-
Confidence                                        12565566666 8 8999999999999999999988888999999999864 


Q ss_pred             CCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 006974          390 PRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVV  469 (623)
Q Consensus       390 ~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii  469 (623)
                      ..++++++++.+++..+++..+.|+|+.++.+++.++..+++|+|+||||||+||++.++.++++++++++.+.|+++|+
T Consensus       614 ~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~  693 (765)
T 1ewq_A          614 AHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLF  693 (765)
T ss_dssp             EEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             cceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEE
Confidence            56788888888899999888888887777767777777799999999999999999999988887799988888899999


Q ss_pred             EcCchhHHhhccccceeeCceEEEecC--ccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhc
Q 006974          470 TTHYADLSCLKDKDTRFENAATEFSLE--TLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLR  539 (623)
Q Consensus       470 ~TH~~~l~~~~~~~~~i~~g~~~~~~~--~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~  539 (623)
                      +|||+++..++  ...+.|++|.++..  .+.++|++..|.++.|||+++|+++|+|++|+++|++.+..++
T Consensus       694 ~TH~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le  763 (765)
T 1ewq_A          694 ATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMA  763 (765)
T ss_dssp             ECCCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             EeCCHHHHHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            99999988887  67789999988754  5889999999999999999999999999999999999987654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=100.00  E-value=1.1e-63  Score=586.43  Aligned_cols=494  Identities=18%  Similarity=0.240  Sum_probs=397.6

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHH---HHhcCCC-CCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALA---MMQSQPL-DLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVN   76 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~---~~~~~~~-~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~   76 (623)
                      ||+|+||+|+..|+.|.++|++||+.++++.+   +.....- .|++++|++|++.|+..|++ +++||..++.+|..+.
T Consensus       337 ~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~-~~~dl~~l~~~l~~~~  415 (934)
T 3thx_A          337 QGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAA-NLQDCYRLYQGINQLP  415 (934)
T ss_dssp             HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCC-CHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998865   2222232 59999999999999999886 8999999999999999


Q ss_pred             HHHHHHHHhhhccCCccc--ccchHHHHHhcCCChhHHHHHHhhhhccC----C-CcccCCcCHHHHHHHHHHHHHHHHH
Q 006974           77 NVWKKLTEAAELDGDSLQ--RYSPLLELLKNCNFLTELEEKIGFCIDCK----L-LIILDRASEDLELIRAERKRNMENL  149 (623)
Q Consensus        77 ~l~~~l~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~L~~~I~~~Id~~----~-~~I~d~as~~L~~iR~~~~~~~~~l  149 (623)
                      .++..+............  ...++...   +..++++.+.|.++||++    + +.|++++|++|+.+|+.+++..+.+
T Consensus       416 ~l~~~l~~~~~~~~~~l~~~~~~~l~~~---~~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l  492 (934)
T 3thx_A          416 NVIQALEKHEGKHQKLLLAVFVTPLTDL---RSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKM  492 (934)
T ss_dssp             HHHHHHHHTCCSSSTTGGGGTHHHHHHH---HHHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHH---HhhHHHHHHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHH
Confidence            999888753210000000  01223222   335677888999999865    3 5799999999999999998888888


Q ss_pred             HHHHHHHHHHHHHhcCC---CCcccccccC-ceEEEEccccccC--CCCcEEEEEecCCcEEEeccchhhhhhHHHHHHh
Q 006974          150 DSLLKKVAAQIFQAGGI---DKPLITKRRS-RMCVGIKASHKYL--LPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLS  223 (623)
Q Consensus       150 ~~~l~~~~~~~~~~~~~---~~~~i~~~~~-r~~i~v~~~~~~~--~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~  223 (623)
                      .+++.+...+    .++   ....+.+.+. +|++.|+......  .|..|+..++.++..+|++| ++.++++++..+.
T Consensus       493 ~~~~~~~~~~----~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~-el~~l~~~~~~~~  567 (934)
T 3thx_A          493 QSTLISAARD----LGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNS-KLTSLNEEYTKNK  567 (934)
T ss_dssp             HHHHHHHHHH----SCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECT-THHHHHHHHTTTT
T ss_pred             HHHHHHHHHH----hCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECH-HHHHHHHHHHHHH
Confidence            7777664432    333   2333444333 7888887543222  23345555555555666655 6899999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCcccceecCCCCCCCcceEEEcccccCccc
Q 006974          224 NSEIAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQW--MDGVCPILSSQSHVSFDSSINIEGIKHPLLL  301 (623)
Q Consensus       224 ~~~~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~--~~~~~P~~~~~~~~~~~~~i~i~~~rHPll~  301 (623)
                      .++.++|.+|+.+|++.+..+.+.|..+.+.+++||+++|+|.+|..  ++||||.+++.+    +..|.|+++|||+++
T Consensus       568 ~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~----~~~i~i~~~rHP~le  643 (934)
T 3thx_A          568 TEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKG----QGRIILKASRHACVE  643 (934)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTT----SCEEEEEEECCTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCC----CcceEeecCccchhh
Confidence            88888999999999999999999999999999999999999999987  789999998732    136999999999995


Q ss_pred             cchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh
Q 006974          302 GSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK  379 (623)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~  379 (623)
                      ..  .                              ++.+|  +++|.+.+| ++++|+||||||||||||++|++.+|+|
T Consensus       644 ~~--~------------------------------~~~~v~ndisl~~~~g-~i~~ItGpNGsGKSTlLr~ial~~~~aq  690 (934)
T 3thx_A          644 VQ--D------------------------------EIAFIPNDVYFEKDKQ-MFHIITGPNMGGKSTYIRQTGVIVLMAQ  690 (934)
T ss_dssp             TC----------------------------------CCCCCEEEEEETTTB-CEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             hc--C------------------------------CceeecccceeecCCC-eEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            32  0                              01245  566666778 9999999999999999999999999999


Q ss_pred             hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974          380 AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY  459 (623)
Q Consensus       380 ~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~  459 (623)
                      +|+|+|+.. ..++.++++++++|..+++.+++|+||++|++++.++..+++|+||||||||+||||.++.+++++++++
T Consensus       691 ~G~~vpa~~-~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~  769 (934)
T 3thx_A          691 IGCFVPCES-AEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY  769 (934)
T ss_dssp             HTCCBSEEE-EEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHH
T ss_pred             cCCcccccc-ccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            999999986 6788889999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             Hhc-CCcEEEEEcCchhHHhhccccceeeCceEEE--ecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHH
Q 006974          460 LRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVE  536 (623)
Q Consensus       460 l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~  536 (623)
                      +.+ .|+++|++|||+++..++++.+.+.||+|.+  +.+.+.++|++..|.++.|||+++|+++|+|+.|+++|++.+.
T Consensus       770 l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~  849 (934)
T 3thx_A          770 IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKAL  849 (934)
T ss_dssp             HHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence            986 4899999999999999999999999999976  4668999999999999999999999999999999999999998


Q ss_pred             hhcch
Q 006974          537 RLRPE  541 (623)
Q Consensus       537 ~~~~~  541 (623)
                      .++..
T Consensus       850 ~le~~  854 (934)
T 3thx_A          850 ELEEF  854 (934)
T ss_dssp             HTTTT
T ss_pred             HHHhc
Confidence            87654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=100.00  E-value=1.6e-62  Score=583.23  Aligned_cols=491  Identities=20%  Similarity=0.256  Sum_probs=371.8

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHH---HhcCCCCCCCCcCHHHHHHHHhc-CCC-----------------
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAM---MQSQPLDLSTIEDIAGILNSAVS-GQL-----------------   59 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~---~~~~~~~l~~i~Di~~~l~r~~~-g~~-----------------   59 (623)
                      ||+|+||+|...|+.|.++|+.||+.|+++...   .+...--|++++|++|++.|+.. |+.                 
T Consensus       431 mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~  510 (1022)
T 2o8b_B          431 FGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEET  510 (1022)
T ss_dssp             HHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHH
T ss_pred             hhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccchhhhhhhhhh
Confidence            899999999999999999999999999988652   22334467899999999999976 442                 


Q ss_pred             -CCHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCcccccchHHHHHh--------cCCChhHHHHHHhhhhcc----C
Q 006974           60 -LSPSEICAVRRT---LRAVNNVWKKLTEAAELDGDSLQRYSPLLELLK--------NCNFLTELEEKIGFCIDC----K  123 (623)
Q Consensus        60 -l~~~eL~~i~~~---L~~~~~l~~~l~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~L~~~I~~~Id~----~  123 (623)
                       ..+.++..+...   +..+..+...+.....     ...-+.|..+..        .++.+.++.+.|.++||+    +
T Consensus       511 ~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~-----~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~  585 (1022)
T 2o8b_B          511 TYSKKKIIDFLSALEGFKVMCKIIGIMEEVAD-----GFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARK  585 (1022)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccCcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhc
Confidence             124444444444   5566666666653111     001123444442        345677777788899985    1


Q ss_pred             CCcc--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccccCceEEEEccccccC-CCCcEEEEEe
Q 006974          124 LLII--LDRASEDLELIRAERKRNMENLDSLLKKVAAQIFQAGGID-KPLITKRRSRMCVGIKASHKYL-LPDGIALNVS  199 (623)
Q Consensus       124 ~~~I--~d~as~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~i~~~~~r~~i~v~~~~~~~-~~~g~~~~~s  199 (623)
                      ++.|  ++++|++|+++|+.+++.++.+.+++.+..    ...++. ..+++.+++||+|+|+.++... +|+.|++.++
T Consensus       586 ~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~----~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t  661 (1022)
T 2o8b_B          586 TGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQR----NRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKST  661 (1022)
T ss_dssp             SCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSG----GGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEE
T ss_pred             CCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCceeEEEecCceEEEEEehhhhcccCCCceEEeee
Confidence            2344  788999999999998888888777765432    223433 3456677889999999999887 8988999999


Q ss_pred             cCCcEEEeccchhhhhhHHHHHHhHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcc
Q 006974          200 SSGATYFMEPKGAVEFNNMEVRLSNSE---IAEETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQ--WMDGV  274 (623)
Q Consensus       200 ~sg~~~~~ep~~~~~l~~~~~~l~~~~---~~ee~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~--~~~~~  274 (623)
                      .+|.++|++|+    +++...++...+   ...+.+++.++...+..+.+.+..+.+.++.||+++|+|.+|.  .++||
T Consensus       662 ~~~~~rf~t~e----l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~  737 (1022)
T 2o8b_B          662 KKGCKRYWTKT----IEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMC  737 (1022)
T ss_dssp             TTEEEECCTTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEE
T ss_pred             ccCccEEechH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCcc
Confidence            99999999885    455444443332   2334456666666777789999999999999999999999999  78999


Q ss_pred             cceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeec-CCccc--cccccccC--
Q 006974          275 CPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGI-SDFPV--PIDIKVEC--  349 (623)
Q Consensus       275 ~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y-~~~~v--~i~l~l~~--  349 (623)
                      +|.|++..  +....|.+++||||+|...                                | ++.+|  +++|.+.+  
T Consensus       738 ~P~~~~~~--~~~~~l~i~~~rHP~l~~~--------------------------------~~~~~~v~ndi~l~~~~~~  783 (1022)
T 2o8b_B          738 RPVILLPE--DTPPFLELKGSRHPCITKT--------------------------------FFGDDFIPNDILIGCEEEE  783 (1022)
T ss_dssp             CCEECCTT--TSCCCEEEEEECCCC--------------------------------------CCCCCCEEEEESCCCSC
T ss_pred             CCccccCC--CCCceEEEEeccccEEEEE--------------------------------ecCCceEeeeeeecccccc
Confidence            99998420  0123699999999998421                                1 12345  55566655  


Q ss_pred             -----CceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHH
Q 006974          350 -----ETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVD  424 (623)
Q Consensus       350 -----g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~  424 (623)
                           | ++++||||||||||||||++|++.+|+++|+|||+.. ..++++++++.++|..+++..+.|+||++|++++.
T Consensus       784 ~~~~~g-~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~-~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~  861 (1022)
T 2o8b_B          784 QENGKA-YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV-CRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS  861 (1022)
T ss_dssp             C---CC-CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSE-EEECCCSBEEEECC---------CHHHHHHHHHHH
T ss_pred             ccCCCC-cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCc-CCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHH
Confidence                 6 8999999999999999999999999999999999986 67888999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhh-ccccceeeCceEEE---------
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCL-KDKDTRFENAATEF---------  493 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~-~~~~~~i~~g~~~~---------  493 (623)
                      |++++++|+||||||||+|||+.++.++++++++++.+. |+++|++|||+++... +++. .+.+|+|.+         
T Consensus       862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~-~v~~g~~~~~~~~~~~~~  940 (1022)
T 2o8b_B          862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV-AVRLGHMACMVENECEDP  940 (1022)
T ss_dssp             HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS-SEEEEEEEEC--------
T ss_pred             HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc-eeecCeEEEEEecCcccC
Confidence            999999999999999999999999999888899999876 8999999999997654 5554 456788874         


Q ss_pred             ecCccccccccccCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHhhcch
Q 006974          494 SLETLRPTYRILWGSTGDSNALNIAKSIGFDRKIIQRAQKLVERLRPE  541 (623)
Q Consensus       494 ~~~~l~~~y~l~~g~~~~s~a~~ia~~~g~~~~i~~~a~~~~~~~~~~  541 (623)
                      +.+.+.++|++.+|.++.|||+++|+++|+|++|+++|++.+..++..
T Consensus       941 ~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~  988 (1022)
T 2o8b_B          941 SQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKM  988 (1022)
T ss_dssp             -----CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSS
T ss_pred             CCCceEEEeeecCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            245788999999999999999999999999999999999998876543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.96  E-value=1.7e-29  Score=252.52  Aligned_cols=167  Identities=17%  Similarity=0.200  Sum_probs=138.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hh
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK  379 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~  379 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                       .+
T Consensus         4 ~l~~~~l~~~y~~~~~l~~vsl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   82 (224)
T 2pcj_A            4 ILRAENIKKVIRGYEILKGISLSVKKG-EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR   82 (224)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred             EEEEEeEEEEECCEeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence            5789999999987665  999999999 99999999999999999999 776421                       12


Q ss_pred             hceeecCCCCC--CccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          380 AGLYLPAKNHP--RLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       380 ~G~~vp~~~~~--~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ...|+|+....  .+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++
T Consensus        83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (224)
T 2pcj_A           83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL  162 (224)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred             cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            24588887421  1222                     22456677888888999999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+.. ++..+.++|.|+|++||+.++..+||+++.+.+|++..+
T Consensus       163 lLDEPt~~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~  220 (224)
T 2pcj_A          163 FADEPTGNLDSANTKRVMD-IFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE  220 (224)
T ss_dssp             EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999 555566568899999999886689999999999988754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.96  E-value=1.7e-29  Score=259.83  Aligned_cols=167  Identities=17%  Similarity=0.154  Sum_probs=139.0

Q ss_pred             cEEEceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhh
Q 006974          326 EMTVGSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~  380 (623)
                      +++++||+++|++.. +  ++||++.+| ++++|+||||||||||+|++ |++.+.                     .+.
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   85 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES   85 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence            588999999997533 4  999999999 99999999999999999999 776421                     122


Q ss_pred             ceeecCCCC---CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          381 GLYLPAKNH---PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       381 G~~vp~~~~---~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ..|+||...   ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++|
T Consensus        86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL  165 (275)
T 3gfo_A           86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  165 (275)
T ss_dssp             EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            358888641   12232                     23456778888889999999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+||||.....+.. ++..+. +.|.|+|++||+++ +..+||+++.+.+|++..+
T Consensus       166 lLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~  225 (275)
T 3gfo_A          166 ILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ  225 (275)
T ss_dssp             EEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred             EEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999 555565 55899999999988 5579999999999998765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=3.4e-29  Score=255.16  Aligned_cols=168  Identities=21%  Similarity=0.260  Sum_probs=139.1

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhcee
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLY  383 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~  383 (623)
                      +.++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                  .+...|
T Consensus        14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~G-ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~   92 (256)
T 1vpl_A           14 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY   92 (256)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred             CeEEEEEEEEEECCEEEEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence            36889999999987665  999999999 99999999999999999999 776431                  112357


Q ss_pred             ecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+...  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||
T Consensus        93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE  172 (256)
T 1vpl_A           93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE  172 (256)
T ss_dssp             ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            888642  11222                     22346677888888999999999999 8999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       173 Pts~LD~~~~~~l~~-~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~  227 (256)
T 1vpl_A          173 PTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET  227 (256)
T ss_dssp             TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred             CccccCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence            999999999999999 55556666889999999988 4568999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.96  E-value=3e-29  Score=256.95  Aligned_cols=167  Identities=14%  Similarity=0.178  Sum_probs=139.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhcee
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGLY  383 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~~  383 (623)
                      +++++||++.|++..+  ++||++.+| ++++|+||||||||||||++ |++.+                   +++...|
T Consensus        11 ~l~~~~l~~~~~~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~   89 (266)
T 4g1u_C           11 LLEASHLHYHVQQQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV   89 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEeEEEEeCCeeEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence            5889999999998776  999999999 99999999999999999999 77643                   1233457


Q ss_pred             ecCCCCC--CccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC------CCcEE
Q 006974          384 LPAKNHP--RLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS------RESLV  435 (623)
Q Consensus       384 vp~~~~~--~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~------~~~Ll  435 (623)
                      +|+....  .+++                   ++.++..+|+.+..++.+++|||||+ |+++|++++.      +|++|
T Consensus        90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lL  169 (266)
T 4g1u_C           90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWL  169 (266)
T ss_dssp             ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEE
T ss_pred             EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence            7876421  1222                   34567788888888999999999999 8999999998      99999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+||||.....+.. ++..+.++ +.|+|++|||++ +..+||+++.+.+|++..+
T Consensus       170 llDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~  229 (266)
T 4g1u_C          170 FLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC  229 (266)
T ss_dssp             EECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999 55556544 569999999988 4579999999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.96  E-value=4.9e-29  Score=250.93  Aligned_cols=166  Identities=16%  Similarity=0.222  Sum_probs=135.2

Q ss_pred             EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      ++++||+++|++    ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                      
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            688999999973    233  999999999 99999999999999999999 776431                      


Q ss_pred             -hhhceeecCCCC--CCccHHH------------------------HHHHHcCCchhh-hcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNH--PRLPWFD------------------------LILADIGDHQSL-EQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~--~~l~~~d------------------------~i~~~ig~~~~~-~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+||...  ..+++.+                        .++..+|+.+.. ++.+++|||||+ |+++|+++
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral  160 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence             112458888752  1223332                        335566776654 889999999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|+++||||||+||||.....+.. ++..+.+ .|.|+|++||++++..+||+++.+.+|++...
T Consensus       161 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~  226 (235)
T 3tif_A          161 ANNPPIILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE  226 (235)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999 4555654 48999999999998889999999999998754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.96  E-value=7.3e-29  Score=253.62  Aligned_cols=167  Identities=20%  Similarity=0.231  Sum_probs=138.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhc
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G  381 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                     .+..
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~G-ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i  102 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV  102 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence            5899999999987665  999999999 99999999999999999999 776421                     1123


Q ss_pred             eeecCCCC--CCccH----------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEE
Q 006974          382 LYLPAKNH--PRLPW----------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVL  436 (623)
Q Consensus       382 ~~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlL  436 (623)
                      .|+|+...  ..+++                      ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++|
T Consensus       103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll  182 (263)
T 2olj_A          103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML  182 (263)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence            57888642  11122                      22456677888888999999999999 8999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          437 IDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       437 LDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||||+||||.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       183 LDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  240 (263)
T 2olj_A          183 FDEPTSALDPEMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE  240 (263)
T ss_dssp             EESTTTTSCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999 55556666889999999988 5579999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.96  E-value=8.9e-29  Score=253.01  Aligned_cols=167  Identities=19%  Similarity=0.165  Sum_probs=138.3

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                         
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   84 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   84 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence            5889999999987665  999999999 99999999999999999999 776421                         


Q ss_pred             -------hhhceeecCCCC--CCccH----------------------HHHHHHHcCCchh-hhcccccccHHHH-HHHH
Q 006974          378 -------SKAGLYLPAKNH--PRLPW----------------------FDLILADIGDHQS-LEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       378 -------a~~G~~vp~~~~--~~l~~----------------------~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~~  424 (623)
                             .+...|+|+...  ..+++                      ++.++..+|+.+. .++.+++|||||+ |+++
T Consensus        85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l  164 (262)
T 1b0u_A           85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  164 (262)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence                   112357888642  11122                      2245667788888 8999999999999 8999


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       165 AraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  234 (262)
T 1b0u_A          165 ARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  234 (262)
T ss_dssp             HHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999 55556666889999999988 4579999999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.96  E-value=1.1e-28  Score=261.83  Aligned_cols=168  Identities=21%  Similarity=0.262  Sum_probs=142.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhhc
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~G  381 (623)
                      .++++||+|+|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                     .+..
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i   82 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL   82 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence            4789999999998766  999999999 99999999999999999999 776431                     1223


Q ss_pred             eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      .|+||+..  ..+++                     +++++..+|+.+..++.+++|||||+ |+++|++++.+|++|||
T Consensus        83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL  162 (359)
T 3fvq_A           83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL  162 (359)
T ss_dssp             EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            57887641  12222                     33557788999999999999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+..+..+...+.+.+++.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~  220 (359)
T 3fvq_A          163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQT  220 (359)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence            99999999999999998677766777999999999987 5679999999999998764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=8.8e-29  Score=249.85  Aligned_cols=167  Identities=21%  Similarity=0.233  Sum_probs=136.8

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      +++++||+++|++..+  ++||++++| ++++|+||||||||||||++ |++.+.                    .+...
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   84 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA   84 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence            5889999999988655  999999999 99999999999999999999 776431                    11145


Q ss_pred             eecCCCC--CCccH--------------------HHHHHHHc-CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEe
Q 006974          383 YLPAKNH--PRLPW--------------------FDLILADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLID  438 (623)
Q Consensus       383 ~vp~~~~--~~l~~--------------------~d~i~~~i-g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLD  438 (623)
                      |+|+...  ..+++                    ++.++..+ |+.+..++.+++|||||+ |+++|++++.+|+++|||
T Consensus        85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD  164 (240)
T 1ji0_A           85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD  164 (240)
T ss_dssp             EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            7888642  11222                    23345556 366677889999999999 899999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          439 EIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       439 Ep~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       165 EPts~LD~~~~~~l~~-~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  220 (240)
T 1ji0_A          165 EPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE  220 (240)
T ss_dssp             CTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999 45556657889999999986 6789999999999998654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.96  E-value=1.5e-28  Score=250.62  Aligned_cols=167  Identities=16%  Similarity=0.136  Sum_probs=138.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------hhhce
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------a~~G~  382 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                    .+...
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   85 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV   85 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            5889999999988665  999999999 99999999999999999999 776431                    11234


Q ss_pred             eecCCCCC--------------Cc---c-------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHH
Q 006974          383 YLPAKNHP--------------RL---P-------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       383 ~vp~~~~~--------------~l---~-------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~  425 (623)
                      |+|+....              ..   +                   .++.++..+|+.+..++.+++|||||+ |+++|
T Consensus        86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA  165 (257)
T 1g6h_A           86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  165 (257)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence            77776410              00   1                   123456778888888999999999999 89999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+||+++.+.+|++...
T Consensus       166 raL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  234 (257)
T 1g6h_A          166 RALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE  234 (257)
T ss_dssp             HHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred             HHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999 55556666899999999987 5679999999999988754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.96  E-value=2e-28  Score=260.01  Aligned_cols=168  Identities=15%  Similarity=0.146  Sum_probs=139.9

Q ss_pred             CcEEEceeeeecCCc----cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------------
Q 006974          325 SEMTVGSLSKGISDF----PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------------  377 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~----~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------------  377 (623)
                      .+++++||+++|++.    .+  ++||++.+| ++++|+||||||||||||++ |+..+.                    
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~  101 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT  101 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCC-CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence            479999999999642    23  999999999 99999999999999999999 766431                    


Q ss_pred             --hhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          378 --SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       378 --a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                        .+...|+||...  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+
T Consensus       102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~  181 (366)
T 3tui_C          102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN  181 (366)
T ss_dssp             HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred             HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence              122458888752  12222                     23457788999899999999999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++|||||||+||||.....+.. ++..+. +.|.|+|++||+++ +..+||++..+.+|++...
T Consensus       182 P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~  245 (366)
T 3tui_C          182 PKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ  245 (366)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred             CCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999 555565 45899999999998 5679999999999998765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.95  E-value=4.1e-28  Score=257.46  Aligned_cols=171  Identities=16%  Similarity=0.117  Sum_probs=140.0

Q ss_pred             CCCcEEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhc
Q 006974          323 ENSEMTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAG  381 (623)
Q Consensus       323 g~~~l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G  381 (623)
                      |...++++||+++| ++..+  ++||++++| ++++|+||||||||||||+| |++.+.                 .+..
T Consensus        11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i   89 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV   89 (355)
T ss_dssp             CCEEEEEEEEEECCTTSTTCEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred             CCceEEEEEEEEEEcCCCEEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence            44579999999999 77655  999999999 99999999999999999999 776431                 1123


Q ss_pred             eeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          382 LYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       382 ~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      .|+|++..  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||
T Consensus        90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL  169 (355)
T 1z47_A           90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLF  169 (355)
T ss_dssp             EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            47777641  12222                     23456778888889999999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       170 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~  227 (355)
T 1z47_A          170 DEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF  227 (355)
T ss_dssp             ESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999554433445899999999987 5679999999999998754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.95  E-value=5e-28  Score=246.18  Aligned_cols=166  Identities=16%  Similarity=0.159  Sum_probs=136.8

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC--Ccc
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLP  393 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~--~l~  393 (623)
                      +++++||+++|+ +..+  ++||++.+| ++++|+||||||||||||++ |++.+.      .+...|+|+....  .++
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~t   82 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKG-DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYS   82 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETT-CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCB
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCC
Confidence            578999999998 6655  999999999 99999999999999999999 776542      1223578876421  111


Q ss_pred             H-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          394 W-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       394 ~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                      +                         ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+.
T Consensus        83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~  162 (253)
T 2nq2_C           83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA  162 (253)
T ss_dssp             HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred             HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            1                         23456677888888999999999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC-CcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          448 EGVALATSILQYLRDR-VGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       448 ~~~~l~~all~~l~~~-~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ....+... +..+.+. |.|+|++||+.+ +..+||+++.+.+|+ ...
T Consensus       163 ~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~  209 (253)
T 2nq2_C          163 NQDIVLSL-LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKF  209 (253)
T ss_dssp             HHHHHHHH-HHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEE
T ss_pred             HHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Eec
Confidence            99999994 4556554 889999999988 457999999999998 543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.95  E-value=4.7e-28  Score=258.69  Aligned_cols=167  Identities=19%  Similarity=0.236  Sum_probs=139.8

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      .++++||+|+|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                 .+...|+|
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf   81 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF   81 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCC-CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence            4789999999998766  999999999 99999999999999999999 776531                 11234788


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      |+..  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||
T Consensus        82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt  161 (381)
T 3rlf_A           82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  161 (381)
T ss_dssp             TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred             cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            8752  12222                     23457788999999999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+..+..+... +..+. +.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 s~LD~~~~~~l~~~-l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~  215 (381)
T 3rlf_A          162 SNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV  215 (381)
T ss_dssp             TTSCHHHHHHHHHH-HHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             cCCCHHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999994 44554 45899999999987 5679999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.95  E-value=6.1e-28  Score=247.37  Aligned_cols=167  Identities=13%  Similarity=0.119  Sum_probs=137.1

Q ss_pred             cEEEceeeeecC--C---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------hhhc
Q 006974          326 EMTVGSLSKGIS--D---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y~--~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------a~~G  381 (623)
                      +++++||+++|+  +   ..+  ++||++.+| ++++|+||||||||||||++ |++.+.                .+..
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i   80 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEG-ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI   80 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence            378999999997  4   344  999999999 99999999999999999999 776431                1223


Q ss_pred             eeecCCC---CCCccH--------------------HHHHHHHcCCc--hhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          382 LYLPAKN---HPRLPW--------------------FDLILADIGDH--QSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       382 ~~vp~~~---~~~l~~--------------------~d~i~~~ig~~--~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      .|+|+..   ...+++                    ++.++..+|+.  +..++.+++|||||+ |+++|++++.+|+++
T Consensus        81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll  160 (266)
T 2yz2_A           81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL  160 (266)
T ss_dssp             EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            5788763   111111                    34567788888  888999999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+.....+.. ++..+.+.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       161 lLDEPts~LD~~~~~~l~~-~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~  219 (266)
T 2yz2_A          161 ILDEPLVGLDREGKTDLLR-IVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD  219 (266)
T ss_dssp             EEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred             EEcCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999 45556555889999999987 5568999999999988654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.95  E-value=1e-27  Score=254.84  Aligned_cols=168  Identities=18%  Similarity=0.172  Sum_probs=139.0

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |++.+.                 .+...|+|
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDG-EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF   81 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence            4789999999988655  999999999 99999999999999999999 776431                 12235788


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      |+..  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~  161 (359)
T 2yyz_A           82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL  161 (359)
T ss_dssp             SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            8641  11222                     34567788888889999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~  215 (359)
T 2yyz_A          162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY  215 (359)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999554433445899999999987 5579999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.95  E-value=3.1e-28  Score=251.07  Aligned_cols=168  Identities=14%  Similarity=0.135  Sum_probs=136.8

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh---------------------hhh
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM---------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~---------------------a~~  380 (623)
                      .+++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                     .+.
T Consensus        20 ~~l~~~~l~~~y~~~~vL~~isl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   98 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH   98 (279)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred             ceEEEEeEEEEECCEEEEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence            36899999999988665  999999999 99999999999999999999 776431                     111


Q ss_pred             ceeecCCCC----CCccH-------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          381 GLYLPAKNH----PRLPW-------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       381 G~~vp~~~~----~~l~~-------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      ..|+|+...    ..+++                         ++.++..+|+.+..++.+++|||||+ |+++|++++.
T Consensus        99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~  178 (279)
T 2ihy_A           99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG  178 (279)
T ss_dssp             EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC
Confidence            346666421    10111                         23456677888888999999999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEcCchhH-HhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA--VVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~v--ii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      +|+++||||||+|||+.....+... +..+.++|.|+  |++||+.+. ..+||+++.+.+|++...
T Consensus       179 ~p~lLlLDEPts~LD~~~~~~l~~~-l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~  244 (279)
T 2ihy_A          179 QPQVLILDEPAAGLDFIARESLLSI-LDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ  244 (279)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHH-HHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999994 45555558899  999999874 579999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.95  E-value=2e-27  Score=240.88  Aligned_cols=166  Identities=15%  Similarity=0.142  Sum_probs=131.1

Q ss_pred             cEEEceeeeec--CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          326 EMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       326 ~l~~~~l~~~y--~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      .++++||+++|  ++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   .+..
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i   85 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   85 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence            47899999999  34445  999999999 99999999999999999999 776421                   1223


Q ss_pred             eeecCCCCC-CccHHH---------------HHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHP-RLPWFD---------------LILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~-~l~~~d---------------~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .|+|+.... ..++.+               .++..+++.+.+++           ..++|||||+ |+++|++++.+|+
T Consensus        86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~  165 (247)
T 2ff7_A           86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  165 (247)
T ss_dssp             EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            578886521 112222               33444565554443           4589999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|||+.....+...+ ..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus       166 lllLDEPts~LD~~~~~~i~~~l-~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~  224 (247)
T 2ff7_A          166 ILIFDEATSALDYESEHVIMRNM-HKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ  224 (247)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHH-HHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEE
T ss_pred             EEEEeCCcccCCHHHHHHHHHHH-HHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999954 4455 48899999999986667999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.95  E-value=1.4e-27  Score=254.16  Aligned_cols=168  Identities=16%  Similarity=0.192  Sum_probs=138.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      .++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                 .+...|+|
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDG-EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF   81 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence            4789999999987655  999999999 99999999999999999999 776431                 12235788


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      |+..  ..+++                     +++++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||
T Consensus        82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  161 (362)
T 2it1_A           82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL  161 (362)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            8642  12222                     23456778888888999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~  215 (362)
T 2it1_A          162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV  215 (362)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999544433445899999999987 5679999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.95  E-value=1e-27  Score=241.95  Aligned_cols=164  Identities=20%  Similarity=0.234  Sum_probs=133.8

Q ss_pred             EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCC
Q 006974          327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK  387 (623)
Q Consensus       327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~  387 (623)
                      ++++||+++|++. + ++||++++  ++++|+||||||||||||++ |++.+.                 .+...|+|+.
T Consensus         2 l~~~~l~~~y~~~-l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~   78 (240)
T 2onk_A            2 FLKVRAEKRLGNF-RLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD   78 (240)
T ss_dssp             CEEEEEEEEETTE-EEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred             EEEEEEEEEeCCE-EeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence            6789999999864 5 99999987  69999999999999999999 776531                 1112467776


Q ss_pred             CC--CCccH-------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974          388 NH--PRLPW-------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD  445 (623)
Q Consensus       388 ~~--~~l~~-------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD  445 (623)
                      ..  ..+++                   ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||
T Consensus        79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD  158 (240)
T 2onk_A           79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD  158 (240)
T ss_dssp             CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred             CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            41  11111                   23456778888888999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          446 PSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       446 ~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.....+... +..+. +.|.|+|++||+.+ +..+|++++.+.+|++...
T Consensus       159 ~~~~~~~~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~  208 (240)
T 2onk_A          159 LKTKGVLMEE-LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK  208 (240)
T ss_dssp             HHHHHHHHHH-HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999994 45554 44889999999987 5689999999999998764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.95  E-value=1.3e-27  Score=245.50  Aligned_cols=168  Identities=13%  Similarity=0.127  Sum_probs=132.6

Q ss_pred             CcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974          325 SEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK  379 (623)
Q Consensus       325 ~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~  379 (623)
                      ++++++||+++|++   ..+  ++||++.+| ++++|+||||||||||||+| |++.+.                   .+
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence            47999999999975   444  999999999 99999999999999999999 776431                   12


Q ss_pred             hceeecCCCCC-CccHHHHH-------------------------HHHc--CCchhhhcccccccHHHH-HHHHHHHhcC
Q 006974          380 AGLYLPAKNHP-RLPWFDLI-------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELVS  430 (623)
Q Consensus       380 ~G~~vp~~~~~-~l~~~d~i-------------------------~~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~~  430 (623)
                      ...|+|+.... ..++.+++                         +..+  |+...+++.+++|||||+ |+++|++++.
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~  173 (271)
T 2ixe_A           94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR  173 (271)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence            24588887421 11333332                         2222  333345677899999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLR-DRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|++|||||||+|||+.....+.. ++..+. +.+.|+|++||+.+....||+++.+.+|++...
T Consensus       174 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~  237 (271)
T 2ixe_A          174 KPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ  237 (271)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred             CCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999 455554 458899999999986667999999999988654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.95  E-value=1.8e-27  Score=252.25  Aligned_cols=167  Identities=20%  Similarity=0.222  Sum_probs=137.6

Q ss_pred             EEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCC
Q 006974          327 MTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAK  387 (623)
Q Consensus       327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~  387 (623)
                      ++++||+++|++..+ ++||++.+| ++++|+||||||||||||+| |+..+.                 .+...|+|++
T Consensus         2 l~~~~l~~~y~~~~l~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~   80 (348)
T 3d31_A            2 IEIESLSRKWKNFSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN   80 (348)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred             EEEEEEEEEECCEEEeeeEEEEcCC-CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence            678999999987623 999999999 99999999999999999999 776431                 1223578887


Q ss_pred             CC--CCccH------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          388 NH--PRLPW------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       388 ~~--~~l~~------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      ..  ..+++                  ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+
T Consensus        81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~  160 (348)
T 3d31_A           81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP  160 (348)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred             cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence            42  12222                  23456778888888999999999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       161 ~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~  209 (348)
T 3d31_A          161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV  209 (348)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999554433456899999999987 5689999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.95  E-value=8.8e-28  Score=244.00  Aligned_cols=167  Identities=21%  Similarity=0.193  Sum_probs=129.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hh--hhhh-------------------hhh-
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL--ASLM-------------------SKA-  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl--~~~~-------------------a~~-  380 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |+  +.+.                   .+. 
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKG-EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG   81 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence            4789999999987666  999999999 99999999999999999999 76  3210                   112 


Q ss_pred             ceeecCCCCC--CccH------------------------HHHHHHHcCC-chhhhccccc-ccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHP--RLPW------------------------FDLILADIGD-HQSLEQNLST-FSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~--~l~~------------------------~d~i~~~ig~-~~~~~~~~st-fS~g~~-rl~~~~~l~~~  431 (623)
                      ..|+|+....  .+++                        ++.++..+|+ .+..++.+++ |||||+ |+++|++++.+
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~  161 (250)
T 2d2e_A           82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE  161 (250)
T ss_dssp             BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred             EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence            2467776421  1111                        1234556677 4667888999 999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hh-ccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~-~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.++. .+ ||+++.+.+|++...
T Consensus       162 p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~  225 (250)
T 2d2e_A          162 PTYAVLDETDSGLDIDALKVVAR-GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT  225 (250)
T ss_dssp             CSEEEEECGGGTTCHHHHHHHHH-HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence            99999999999999999999999 5566666688999999998854 56 599999999988754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.95  E-value=3.9e-27  Score=251.84  Aligned_cols=168  Identities=15%  Similarity=0.193  Sum_probs=137.9

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hh
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK  379 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~  379 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                       .+
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r   81 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence            4789999999987655  999999999 99999999999999999999 776431                       01


Q ss_pred             hceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          380 AGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       380 ~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ...|+||+..  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++
T Consensus        82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL  161 (372)
T 1g29_1           82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF  161 (372)
T ss_dssp             SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            1347787642  12222                     23456677888888999999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~  221 (372)
T 1g29_1          162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV  221 (372)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe
Confidence            9999999999999999999554433445899999999987 5579999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.95  E-value=2.1e-27  Score=253.68  Aligned_cols=168  Identities=17%  Similarity=0.223  Sum_probs=137.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      .++++||+++|++..+  ++||++.+| ++++|+||||||||||||+| |+..+.                 .+...|+|
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   89 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   89 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence            4889999999987655  999999999 99999999999999999999 776431                 12234778


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      |+..  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||
T Consensus        90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~  169 (372)
T 1v43_A           90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  169 (372)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            7641  11122                     33567788998889999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~  223 (372)
T 1v43_A          170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI  223 (372)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999554433445899999999987 5579999999999998754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.95  E-value=2.7e-27  Score=251.62  Aligned_cols=168  Identities=20%  Similarity=0.162  Sum_probs=138.1

Q ss_pred             cEEEceeeeecCCcc--c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------h
Q 006974          326 EMTVGSLSKGISDFP--V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------S  378 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~--v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a  378 (623)
                      +++++||+++|++..  +  ++||++.+| ++++|+||||||||||||+| |++.+.                      .
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~   81 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence            478999999998765  5  999999999 99999999999999999999 776431                      0


Q ss_pred             hhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          379 KAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      +...|+||...  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++
T Consensus        82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l  161 (353)
T 1oxx_K           82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (353)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            11347777641  11222                     23467788888889999999999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||||+|||+..+..+...+.+...+.|.|+|++|||.+ ...+||++..+.+|++...
T Consensus       162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~  222 (353)
T 1oxx_K          162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV  222 (353)
T ss_dssp             EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999554433445899999999987 5679999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.94  E-value=5.8e-27  Score=240.22  Aligned_cols=167  Identities=21%  Similarity=0.205  Sum_probs=133.6

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh--hh-------------------hhhh-
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA--SL-------------------MSKA-  380 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~--~~-------------------~a~~-  380 (623)
                      +++++||+++|++..+  ++||++.+| ++++|+||||||||||||++ |++  .+                   ..+. 
T Consensus        20 ~l~~~~l~~~y~~~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~   98 (267)
T 2zu0_C           20 MLSIKDLHVSVEDKAILRGLSLDVHPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG   98 (267)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence            6899999999987665  999999999 99999999999999999999 763  21                   0112 


Q ss_pred             ceeecCCCCC--CccH----------------------------HHHHHHHcCCc-hhhhcccc-cccHHHH-HHHHHHH
Q 006974          381 GLYLPAKNHP--RLPW----------------------------FDLILADIGDH-QSLEQNLS-TFSGHIS-RIVDILE  427 (623)
Q Consensus       381 G~~vp~~~~~--~l~~----------------------------~d~i~~~ig~~-~~~~~~~s-tfS~g~~-rl~~~~~  427 (623)
                      ..|+|+....  .++.                            ++.++..+|+. +..++.++ +|||||+ |+++|++
T Consensus        99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra  178 (267)
T 2zu0_C           99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM  178 (267)
T ss_dssp             EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred             EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence            3478886421  1111                            12345667775 45677887 5999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH-hh-ccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS-CL-KDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~-~~-~~~~~~i~~g~~~~~  494 (623)
                      ++.+|+++||||||+|||+.....+.. ++..+.+.|.|+|++||+.++. .+ ||+++.+.+|++...
T Consensus       179 L~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~  246 (267)
T 2zu0_C          179 AVLEPELCILDESDSGLDIDALKVVAD-GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS  246 (267)
T ss_dssp             HHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred             HHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence            999999999999999999999999998 5566666688999999998855 44 899999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.94  E-value=2.2e-27  Score=235.43  Aligned_cols=157  Identities=18%  Similarity=0.248  Sum_probs=126.5

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeecCCC
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKN  388 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp~~~  388 (623)
                      .++++||+++|++ .+  ++||++.+| ++++|+||||||||||||++ |++.+.              .+...|+|+..
T Consensus        10 ~l~~~~ls~~y~~-~il~~vsl~i~~G-e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~   87 (214)
T 1sgw_A           10 KLEIRDLSVGYDK-PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI   87 (214)
T ss_dssp             EEEEEEEEEESSS-EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred             eEEEEEEEEEeCC-eEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence            5899999999988 65  999999999 99999999999999999999 776431              12235788865


Q ss_pred             CC--CccHH-------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          389 HP--RLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       389 ~~--~l~~~-------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      ..  .+++.                   +.++..+|+.+. ++.+++|||||+ |+++|++++.+|+++||||||+|||+
T Consensus        88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~  166 (214)
T 1sgw_A           88 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE  166 (214)
T ss_dssp             CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred             cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence            21  12222                   234566777666 889999999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcccccee
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRF  486 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i  486 (623)
                      .....+... +..+.+.|.|+|++||+.+ +..+|++++.+
T Consensus       167 ~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~  206 (214)
T 1sgw_A          167 DSKHKVLKS-ILEILKEKGIVIISSREELSYCDVNENLHKY  206 (214)
T ss_dssp             TTHHHHHHH-HHHHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred             HHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence            999999994 4556655789999999987 45677776644

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.94  E-value=1e-26  Score=235.89  Aligned_cols=164  Identities=19%  Similarity=0.251  Sum_probs=134.6

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------------------a~~G~~vp  385 (623)
                      +++++||+++   ..+ ++||++.+| ++++|+||||||||||||++ |++.+.                  .+...|+|
T Consensus         4 ~l~~~~l~~~---~vl~~vsl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~   79 (249)
T 2qi9_C            4 VMQLQDVAES---TRLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS   79 (249)
T ss_dssp             EEEEEEEEET---TTEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred             EEEEEceEEE---EEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEEC
Confidence            4788999987   234 999999999 99999999999999999999 776421                  12235788


Q ss_pred             CCCCC--CccH----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc-------EEEEeC
Q 006974          386 AKNHP--RLPW----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES-------LVLIDE  439 (623)
Q Consensus       386 ~~~~~--~l~~----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~-------LlLLDE  439 (623)
                      +....  .+++                ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+       ++||||
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE  159 (249)
T 2qi9_C           80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE  159 (249)
T ss_dssp             SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred             CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence            86421  1122                34567778888888999999999999 8999999999999       999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH-HhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL-SCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l-~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+|||+.....+.. ++..+.++|.|+|++||+.+. ..+|++++.+.+|++...
T Consensus       160 Pts~LD~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  214 (249)
T 2qi9_C          160 PMNSLDVAQQSALDK-ILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS  214 (249)
T ss_dssp             TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999 455566558899999999885 579999999999988654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.94  E-value=3.2e-27  Score=238.88  Aligned_cols=164  Identities=13%  Similarity=0.132  Sum_probs=128.8

Q ss_pred             EEEceeeeec-CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhcee
Q 006974          327 MTVGSLSKGI-SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGLY  383 (623)
Q Consensus       327 l~~~~l~~~y-~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~~  383 (623)
                      ++++||+++| ++..+  ++||++.+| ++++|+||||||||||||++ |++.+.                   .+...|
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence            6789999999 55555  999999999 99999999999999999999 776431                   112347


Q ss_pred             ecCCCCC-CccH----------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCcE
Q 006974          384 LPAKNHP-RLPW----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       384 vp~~~~~-~l~~----------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      +|+.... ..++                +..++..+++.+.++           +.+++|||||+ |+++|++++.+|++
T Consensus        81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l  160 (243)
T 1mv5_A           81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (243)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence            7776421 0112                233444556554433           34689999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      +||||||+|||+.....+... +..+. .+.|+|++||+.+....||+++.+.+|++..
T Consensus       161 llLDEPts~LD~~~~~~i~~~-l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~  217 (243)
T 1mv5_A          161 LMLDEATASLDSESESMVQKA-LDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITG  217 (243)
T ss_dssp             EEEECCSCSSCSSSCCHHHHH-HHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred             EEEECCcccCCHHHHHHHHHH-HHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence            999999999999999999995 44555 5889999999998666799999999998753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.94  E-value=9.8e-27  Score=237.83  Aligned_cols=161  Identities=22%  Similarity=0.237  Sum_probs=132.3

Q ss_pred             EEEceeeeecCC----ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh----------------hhce-
Q 006974          327 MTVGSLSKGISD----FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------KAGL-  382 (623)
Q Consensus       327 l~~~~l~~~y~~----~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a----------------~~G~-  382 (623)
                      ++++||+++|++    ..+  ++||++. | ++++|+||||||||||||++ |++ +..                +... 
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-G-e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-G-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-C-EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence            678999999976    555  9999999 9 99999999999999999999 776 521                1123 


Q ss_pred             eecCCCCCCccH-----------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC
Q 006974          383 YLPAKNHPRLPW-----------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG  443 (623)
Q Consensus       383 ~vp~~~~~~l~~-----------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g  443 (623)
                      |+|+.....+++                 ++.++..+|+. +..++++++|||||+ |+++|++++.+|+++||||||+|
T Consensus        79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~  158 (263)
T 2pjz_A           79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN  158 (263)
T ss_dssp             CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred             EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence            788764222232                 23456778888 888999999999999 89999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcc-ccceeeCceEEEe
Q 006974          444 TDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKD-KDTRFENAATEFS  494 (623)
Q Consensus       444 lD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~-~~~~i~~g~~~~~  494 (623)
                      ||+.....+.. ++..+.+   |+|++||+.+ +..+|+ +++.+.+|++...
T Consensus       159 LD~~~~~~l~~-~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~  207 (263)
T 2pjz_A          159 VDAARRHVISR-YIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGP  207 (263)
T ss_dssp             CCHHHHHHHHH-HHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred             cCHHHHHHHHH-HHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence            99999999998 4444433   9999999987 567999 9999999988654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.94  E-value=2e-26  Score=235.31  Aligned_cols=167  Identities=12%  Similarity=0.065  Sum_probs=130.2

Q ss_pred             CcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhh
Q 006974          325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~  380 (623)
                      ..++++||+++|++.   .+  ++||++.+| ++++|+||||||||||||++ |++.+                  ..+.
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSG-TTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhcc
Confidence            368999999999752   34  999999999 99999999999999999999 76532                  0122


Q ss_pred             ceeecCCCCC-CccHHHH---------------HHHHcCCchhh-----------hcccccccHHHH-HHHHHHHhcCCC
Q 006974          381 GLYLPAKNHP-RLPWFDL---------------ILADIGDHQSL-----------EQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       381 G~~vp~~~~~-~l~~~d~---------------i~~~ig~~~~~-----------~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      ..|+|+.... ..++.++               ++..+++.+.+           .+.+++|||||+ |+++|++++.+|
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  174 (260)
T 2ghi_A           95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP  174 (260)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence            3578886521 1123332               23334544332           245689999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+|||+.....+.. ++..+.+ +.|+|++||+.+....||+++.+.+|++...
T Consensus       175 ~lllLDEPts~LD~~~~~~i~~-~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~  234 (260)
T 2ghi_A          175 KIVIFDEATSSLDSKTEYLFQK-AVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEK  234 (260)
T ss_dssp             SEEEEECCCCTTCHHHHHHHHH-HHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred             CEEEEECccccCCHHHHHHHHH-HHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999998 4555654 7899999999886667999999999988654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.94  E-value=4.4e-27  Score=235.73  Aligned_cols=168  Identities=15%  Similarity=0.102  Sum_probs=128.7

Q ss_pred             CcEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC-Cc
Q 006974          325 SEMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RL  392 (623)
Q Consensus       325 ~~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~-~l  392 (623)
                      ++++++||+++|+  +..+  ++||++.+| ++++|+||||||||||||++ |++.+..      ....|+|+.... ..
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~   83 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG   83 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence            3689999999995  3444  999999999 99999999999999999999 7765431      112478886421 11


Q ss_pred             cHHHH--------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          393 PWFDL--------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       393 ~~~d~--------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      ++.++              ++...++.+.++           +..++|||||+ |+++|++++.+|+++||||||+|||+
T Consensus        84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~  163 (229)
T 2pze_A           84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  163 (229)
T ss_dssp             CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred             CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence            23332              223334433332           23589999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      .....+...++..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus       164 ~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~  210 (229)
T 2pze_A          164 LTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY  210 (229)
T ss_dssp             HHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEE
Confidence            999998874333333 37899999999886667999999999988754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.94  E-value=8.3e-27  Score=234.97  Aligned_cols=167  Identities=15%  Similarity=0.141  Sum_probs=128.4

Q ss_pred             cEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCC-CCcc
Q 006974          326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNH-PRLP  393 (623)
Q Consensus       326 ~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~-~~l~  393 (623)
                      +++++||+++|+  +..+  ++||++.+| ++++|+||||||||||||++ |++.+...      ...|+|+... ...+
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t   81 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS   81 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence            478999999997  3444  999999999 99999999999999999999 77654311      1247888642 1122


Q ss_pred             HHHHH--------------HHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          394 WFDLI--------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       394 ~~d~i--------------~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                      +.+++              ...++..+           .+++.+++|||||+ |+++|++++.+|+++||||||+|||+.
T Consensus        82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~  161 (237)
T 2cbz_A           82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH  161 (237)
T ss_dssp             HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred             HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence            33332              22222221           13567899999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHH--HHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          448 EGVALATSIL--QYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       448 ~~~~l~~all--~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ....+...+.  ..+. .+.|+|++||+.+....||+++.+.+|++...
T Consensus       162 ~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~  209 (237)
T 2cbz_A          162 VGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEM  209 (237)
T ss_dssp             HHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence            9999988543  2233 47899999999886668999999999988654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.94  E-value=3.4e-26  Score=238.40  Aligned_cols=167  Identities=14%  Similarity=0.162  Sum_probs=131.2

Q ss_pred             CcEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc
Q 006974          325 SEMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G  381 (623)
                      +.++++||+++|+ +..+  ++||++.+| ++++|+||||||||||+|++ |++.+                   +.+..
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i  130 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMPG-QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI  130 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECTT-CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence            4689999999995 4444  999999999 99999999999999999999 76643                   12234


Q ss_pred             eeecCCCCC-CccHHHH---------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHP-RLPWFDL---------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~-~l~~~d~---------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .|+||.... ..++.++               ++...++.+.+.           .....|||||+ |+++|++++.+|+
T Consensus       131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~  210 (306)
T 3nh6_A          131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG  210 (306)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence            588987521 1123333               233344444333           34579999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +|||||||+|||+.....+...+. .+.+ +.|+|++||+++....||+++++.+|++...
T Consensus       211 iLlLDEPts~LD~~~~~~i~~~l~-~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~  269 (306)
T 3nh6_A          211 IILLDEATSALDTSNERAIQASLA-KVCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVER  269 (306)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHH-HHHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEE
T ss_pred             EEEEECCcccCCHHHHHHHHHHHH-HHcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence            999999999999999999998554 4544 6899999999986666999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.4e-25  Score=240.88  Aligned_cols=166  Identities=16%  Similarity=0.134  Sum_probs=136.4

Q ss_pred             CcEEEceeeeec--CCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhc
Q 006974          325 SEMTVGSLSKGI--SDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y--~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G  381 (623)
                      +.++++||+|+|  ++..+  ++||++.+| ++++|+||||||||||||+| |+...                  +.+..
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i   96 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF   96 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence            469999999999  55554  999999999 99999999999999999999 66531                  11234


Q ss_pred             eeecCCCCCCc--cH--------------HHHHHHHcCCchhhhccccc-----------ccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHPRL--PW--------------FDLILADIGDHQSLEQNLST-----------FSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~~l--~~--------------~d~i~~~ig~~~~~~~~~st-----------fS~g~~-rl~~~~~l~~~~~  433 (623)
                      .|+||+. ..+  ++              +..++..+++.+.+++.++.           |||||+ |+++|++++.+|+
T Consensus        97 g~v~Q~~-~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~  175 (390)
T 3gd7_A           97 GVIPQKV-FIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  175 (390)
T ss_dssp             EEESCCC-CCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             EEEcCCc-ccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence            5788875 222  22              33456778888888888887           999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+|||+..+..+...+ ..+. .+.|+|++||+.+....||++..+.+|++...
T Consensus       176 lLLLDEPts~LD~~~~~~l~~~l-~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~  234 (390)
T 3gd7_A          176 ILLLDEPSAHLDPVTYQIIRRTL-KQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQY  234 (390)
T ss_dssp             EEEEESHHHHSCHHHHHHHHHHH-HTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred             EEEEeCCccCCCHHHHHHHHHHH-HHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999988844 4333 47899999999887677999999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.91  E-value=9.8e-25  Score=226.04  Aligned_cols=167  Identities=15%  Similarity=0.077  Sum_probs=116.9

Q ss_pred             CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------hhceeecCCCCC-CccHH
Q 006974          325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------KAGLYLPAKNHP-RLPWF  395 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------~~G~~vp~~~~~-~l~~~  395 (623)
                      +.++++||++.+ ...+ ++||++.+| ++++|+||||||||||||++ |++.+.+      ....|+|+.... ..++.
T Consensus        39 ~~l~~~~l~~~~-~~vl~~isl~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~  116 (290)
T 2bbs_A           39 DSLSFSNFSLLG-TPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIK  116 (290)
T ss_dssp             -----------C-CCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHH
T ss_pred             ceEEEEEEEEcC-ceEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHH
Confidence            357889999864 2233 999999999 99999999999999999999 7765421      112478886421 12344


Q ss_pred             HHHH-------------HHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHH
Q 006974          396 DLIL-------------ADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGV  450 (623)
Q Consensus       396 d~i~-------------~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~  450 (623)
                      +++.             ...++.+.++.           ..++|||||+ |+++|++++.+|+++||||||+|||+....
T Consensus       117 enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~  196 (290)
T 2bbs_A          117 ENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK  196 (290)
T ss_dssp             HHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred             HHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence            4432             22343333222           3479999999 899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          451 ALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       451 ~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+...++..+. .+.|+|++||+.+....|++++.+.+|++...
T Consensus       197 ~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~  239 (290)
T 2bbs_A          197 EIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFY  239 (290)
T ss_dssp             HHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence            98874333333 37899999999986667999999999988654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.91  E-value=2.8e-24  Score=240.38  Aligned_cols=163  Identities=21%  Similarity=0.264  Sum_probs=130.3

Q ss_pred             CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------hhhceeecCCCCC--Ccc
Q 006974          325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHP--RLP  393 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a~~G~~vp~~~~~--~l~  393 (623)
                      ..++++|+++.|++..+ .+++++.+| ++++|+||||||||||+|+| |++.+.       .+...|+|+....  ..+
T Consensus       268 ~~l~~~~l~~~~~~~~l~~~~~~i~~G-ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~t  346 (538)
T 3ozx_A          268 TKMKWTKIIKKLGDFQLVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGT  346 (538)
T ss_dssp             EEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSB
T ss_pred             ceEEEcceEEEECCEEEEeccceECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCC
Confidence            46889999999988555 678999999 99999999999999999999 766542       1222466765322  222


Q ss_pred             HH------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 006974          394 WF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALAT  454 (623)
Q Consensus       394 ~~------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~  454 (623)
                      +.                  +.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||+|||+.....+..
T Consensus       347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~  426 (538)
T 3ozx_A          347 VQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK  426 (538)
T ss_dssp             HHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred             HHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence            22                  3344556677778899999999999 8999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          455 SILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       455 all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      .+.+...+.|.|+|++|||++ +..+||+++++.+
T Consensus       427 ~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~  461 (538)
T 3ozx_A          427 AIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG  461 (538)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            554443456889999999988 5568999988865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.90  E-value=7.4e-24  Score=239.90  Aligned_cols=167  Identities=14%  Similarity=0.154  Sum_probs=131.2

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  ..+  ++||++++| ++++|+||||||||||+|++ |+..+.                   .+.
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQG-KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH  418 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence            46999999999974  444  999999999 99999999999999999999 666431                   122


Q ss_pred             ceeecCCCCC-CccH----------------HHHHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHP-RLPW----------------FDLILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~-~l~~----------------~d~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      -.|+||+... ..++                +++++...|+.+.+++           ..++|||||+ |+++|++++.+
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~  498 (582)
T 3b5x_A          419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD  498 (582)
T ss_pred             eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence            3578886420 0111                2233444555544443           4589999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|+|+.....+.+.+ ..+.+ |.|+|++||+.+....||+++.+.+|++...
T Consensus       499 p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  559 (582)
T 3b5x_A          499 APVLILDEATSALDTESERAIQAAL-DELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIER  559 (582)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHH-HHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999998854 44554 8899999999986678999999999988654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.90  E-value=6e-24  Score=238.09  Aligned_cols=163  Identities=21%  Similarity=0.260  Sum_probs=130.6

Q ss_pred             CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC--CccH
Q 006974          325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLPW  394 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~--~l~~  394 (623)
                      .+++++|+++.|++..+ .++|++.+| ++++|+||||||||||||+| |++.+.      .....|+|+....  .+++
T Consensus       286 ~~l~~~~l~~~~~~~~l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv  364 (538)
T 1yqt_A          286 TLVTYPRLVKDYGSFRLEVEPGEIKKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV  364 (538)
T ss_dssp             EEEEECCEEEEETTEEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH
T ss_pred             eEEEEeeEEEEECCEEEEeCccccCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcH
Confidence            46889999999987544 788899999 99999999999999999999 776542      1223478886521  1222


Q ss_pred             H-----------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006974          395 F-----------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI  456 (623)
Q Consensus       395 ~-----------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~al  456 (623)
                      .                 +.++..+|+.+..++.+++||||++ |+++|++++.+|++|||||||+|||+.....+...+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l  444 (538)
T 1yqt_A          365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI  444 (538)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            1                 1234456777778899999999999 899999999999999999999999999999999955


Q ss_pred             HHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       457 l~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      .+...+.|.|+|++|||.+ +..+||+++.+.+
T Consensus       445 ~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~  477 (538)
T 1yqt_A          445 RHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG  477 (538)
T ss_dssp             HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            4433356899999999988 5679999988875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.90  E-value=9.9e-24  Score=239.00  Aligned_cols=163  Identities=21%  Similarity=0.241  Sum_probs=131.9

Q ss_pred             CcEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh------hhhceeecCCCCC--CccH
Q 006974          325 SEMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM------SKAGLYLPAKNHP--RLPW  394 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~------a~~G~~vp~~~~~--~l~~  394 (623)
                      ..++++|+++.|++..+ .++|++.+| ++++|+||||||||||||++ |++.+.      .....|+|+....  .+++
T Consensus       356 ~~l~~~~l~~~~~~~~l~~~~~~v~~G-ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv  434 (607)
T 3bk7_A          356 TLVEYPRLVKDYGSFKLEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV  434 (607)
T ss_dssp             EEEEECCEEEECSSCEEEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBH
T ss_pred             eEEEEeceEEEecceEEEecccccCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcH
Confidence            46889999999987544 788889999 99999999999999999999 776542      1223578886421  1221


Q ss_pred             -----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 006974          395 -----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSI  456 (623)
Q Consensus       395 -----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~al  456 (623)
                                       ++.++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+|||+.....+...+
T Consensus       435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l  514 (607)
T 3bk7_A          435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI  514 (607)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence                             12345677888888999999999999 899999999999999999999999999999999955


Q ss_pred             HHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          457 LQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       457 l~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      .+...+.|.|+|++|||.+ +..+||+++.+.+
T Consensus       515 ~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~  547 (607)
T 3bk7_A          515 RHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG  547 (607)
T ss_dssp             HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence            4433456899999999988 5568999988864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.90  E-value=1.1e-23  Score=238.55  Aligned_cols=167  Identities=14%  Similarity=0.154  Sum_probs=132.0

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  ..+  ++||++++| ++++|+||||||||||+|++ |+..+.                   .+.
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ  418 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence            46999999999973  444  999999999 99999999999999999999 776431                   123


Q ss_pred             ceeecCCCCC-CccHHH----------------HHHHHcCCchhhhc-----------ccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHP-RLPWFD----------------LILADIGDHQSLEQ-----------NLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~-~l~~~d----------------~i~~~ig~~~~~~~-----------~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..|+||+... ..++.+                +++...|+.+.+++           ...+|||||+ |+++|++++.+
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~  498 (582)
T 3b60_A          419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  498 (582)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence            4588887521 112222                23344455444433           4589999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+|+|+.....+.+.+ ..+.+ |.|+|++||+.+....||++..+.+|++...
T Consensus       499 p~illlDEpts~LD~~~~~~i~~~l-~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  559 (582)
T 3b60_A          499 SPILILDEATSALDTESERAIQAAL-DELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVER  559 (582)
T ss_dssp             CSEEEEETTTSSCCHHHHHHHHHHH-HHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred             CCEEEEECccccCCHHHHHHHHHHH-HHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999854 44554 8899999999986678999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.90  E-value=9.6e-24  Score=236.43  Aligned_cols=159  Identities=20%  Similarity=0.185  Sum_probs=123.3

Q ss_pred             EEE-ceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-h------------h--------
Q 006974          327 MTV-GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K------------A--------  380 (623)
Q Consensus       327 l~~-~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-~------------~--------  380 (623)
                      .++ +||+++|++.. +  ++| ++.+| ++++|+||||||||||||+| |++.+.. .            .        
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~   98 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF   98 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence            344 58999998753 4  788 89999 99999999999999999999 6553210 0            0        


Q ss_pred             ---------ceeecCCCC--C---Ccc------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          381 ---------GLYLPAKNH--P---RLP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       381 ---------G~~vp~~~~--~---~l~------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                               ..++|+...  .   ...            .++.++..+|+.+..++.+++|||||+ |+++|++++.+|+
T Consensus        99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~  178 (538)
T 1yqt_A           99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNAT  178 (538)
T ss_dssp             HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence                     113333210  0   001            134678889998889999999999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      +|||||||+|||+.....+.. +++.+.+.|.|+|++||+++ +..+||+++.+.+
T Consensus       179 lLlLDEPTs~LD~~~~~~l~~-~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~  233 (538)
T 1yqt_A          179 FYFFDEPSSYLDIRQRLNAAR-AIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYG  233 (538)
T ss_dssp             EEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             EEEEECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence            999999999999999999999 55566667899999999988 5578999887754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.90  E-value=2.1e-23  Score=236.37  Aligned_cols=156  Identities=21%  Similarity=0.223  Sum_probs=123.8

Q ss_pred             ceeeeecCCcc-c--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-h-------------------------
Q 006974          330 GSLSKGISDFP-V--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-K-------------------------  379 (623)
Q Consensus       330 ~~l~~~y~~~~-v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-~-------------------------  379 (623)
                      +||+++|++.. +  +++ .+.+| ++++|+||||||||||||+| |++.+.. .                         
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~G-e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~  172 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK  172 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCC-CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence            89999998753 4  788 89999 99999999999999999999 6653210 0                         


Q ss_pred             ----hceeecCCCC---C--C------------ccHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          380 ----AGLYLPAKNH---P--R------------LPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       380 ----~G~~vp~~~~---~--~------------l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                          ...++|+...   .  .            ...++.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||
T Consensus       173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL  252 (607)
T 3bk7_A          173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF  252 (607)
T ss_dssp             HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred             hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence                0113333210   0  0            01245678889999889999999999999 89999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      ||||+|||+.....+.. +++.+.+.|.|+|++|||++ +..+||++..+.+
T Consensus       253 DEPTs~LD~~~~~~l~~-~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~  303 (607)
T 3bk7_A          253 DEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYG  303 (607)
T ss_dssp             ECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred             ECCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHHhhCCEEEEECC
Confidence            99999999999999999 55666666899999999988 4568898877754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.90  E-value=2.1e-23  Score=236.90  Aligned_cols=167  Identities=11%  Similarity=0.089  Sum_probs=130.7

Q ss_pred             CcEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhc
Q 006974          325 SEMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAG  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G  381 (623)
                      +.++++||+++|++ ..+  ++||++++| ++++|+||||||||||+|++ |+..+.                   .+..
T Consensus       353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i  431 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKKKPVLKDITFHIKPG-QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI  431 (598)
T ss_dssp             CCEEEEEEECCSSSSSCSCCSEEEECCTT-CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred             CeEEEEEEEEECCCCCccccceEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence            56999999999964 344  999999999 99999999999999999999 666431                   1234


Q ss_pred             eeecCCCCC-CccHHHHHH---------------HHcCCchhhhcc-----------cccccHHHH-HHHHHHHhcCCCc
Q 006974          382 LYLPAKNHP-RLPWFDLIL---------------ADIGDHQSLEQN-----------LSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       382 ~~vp~~~~~-~l~~~d~i~---------------~~ig~~~~~~~~-----------~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .|+||+... ..++.+++.               ...+..+.++..           ..+|||||+ |+++|++++.+|+
T Consensus       432 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~  511 (598)
T 3qf4_B          432 GIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK  511 (598)
T ss_dssp             EEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCS
T ss_pred             EEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            588887521 123344432               222333333332           378999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||+++|+.....+...+.+ +. +|.|+|++||+.+....||++..+++|++...
T Consensus       512 illlDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~  570 (598)
T 3qf4_B          512 ILILDEATSNVDTKTEKSIQAAMWK-LM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM  570 (598)
T ss_dssp             EEEECCCCTTCCHHHHHHHHHHHHH-HH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHH-Hc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence            9999999999999999999885544 54 47899999999987677999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.89  E-value=4.3e-23  Score=233.71  Aligned_cols=166  Identities=16%  Similarity=0.171  Sum_probs=131.4

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~  380 (623)
                      +.++++||+++|++  ..+  ++||++++| ++++|+||||||||||+|++ |+..+                   +.+.
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  418 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPG-SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH  418 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence            56999999999953  344  999999999 99999999999999999999 66543                   1223


Q ss_pred             ceeecCCCCCCc--cHHHHH---------------HHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPRL--PWFDLI---------------LADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~l--~~~d~i---------------~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..|+||+.. .+  ++.+++               ....+..+           .+.....+|||||+ |+++|++++.+
T Consensus       419 i~~v~Q~~~-lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~  497 (587)
T 3qf4_A          419 ISAVPQETV-LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK  497 (587)
T ss_dssp             EEEECSSCC-CCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred             eEEECCCCc-CcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence            458898752 11  222222               22223322           33456789999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||+++|+.....+...+. .+. ++.|+|++||+.+....||++..+++|++...
T Consensus       498 p~illlDEpts~LD~~~~~~i~~~l~-~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~  558 (587)
T 3qf4_A          498 PKVLILDDCTSSVDPITEKRILDGLK-RYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGF  558 (587)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHH-HHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEE
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHH-HhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999554 454 47899999999997779999999999998765

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.89  E-value=3.4e-23  Score=234.27  Aligned_cols=167  Identities=16%  Similarity=0.176  Sum_probs=130.4

Q ss_pred             CcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~  380 (623)
                      +.++++||+++|++  ..+  ++||++++| ++++|+||||||||||+|++ |+..+.                   .+.
T Consensus       338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~  416 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ  416 (578)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred             CeEEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence            56999999999964  334  999999999 99999999999999999999 766431                   123


Q ss_pred             ceeecCCCCC-CccHHHHH---------------HHHcCCchhhh-----------cccccccHHHH-HHHHHHHhcCCC
Q 006974          381 GLYLPAKNHP-RLPWFDLI---------------LADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       381 G~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      ..|+||+... ..++.+++               +...+..+.++           ....+|||||+ |+++|++++.+|
T Consensus       417 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p  496 (578)
T 4a82_A          417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP  496 (578)
T ss_dssp             EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred             eEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC
Confidence            4588887521 11233332               33344433333           34468999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||+|+|+.....+... +..+.+ +.|+|++||+.+....||++..+.+|++...
T Consensus       497 ~illlDEpts~LD~~~~~~i~~~-l~~~~~-~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~  556 (578)
T 4a82_A          497 PILILDEATSALDLESESIIQEA-LDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVET  556 (578)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHH-HHHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred             CEEEEECccccCCHHHHHHHHHH-HHHHcC-CCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence            99999999999999998888884 455543 6899999999986677999999999998765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=9e-23  Score=230.89  Aligned_cols=155  Identities=17%  Similarity=0.140  Sum_probs=118.1

Q ss_pred             eeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh---------------hc-----------
Q 006974          331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK---------------AG-----------  381 (623)
Q Consensus       331 ~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~---------------~G-----------  381 (623)
                      |++++|+....  .....+.+| ++++|+||||||||||||+| |++.+..-               .|           
T Consensus        82 ~~~~~Y~~~~~~l~~l~~~~~G-ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML  160 (608)
T ss_dssp             TEEEECSTTSCEEECCCCCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CeEEEECCCceeecCCCCCCCC-CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence            45677765332  333357789 99999999999999999999 55532110               00           


Q ss_pred             ------eeecCCCCCCc-----------------------cHHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          382 ------LYLPAKNHPRL-----------------------PWFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       382 ------~~vp~~~~~~l-----------------------~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                            .+.|+.. ..+                       ..++.++..+|+.+..++.+++|||||+ |+++|++++.+
T Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~  239 (608)
T 3j16_B          161 EDDIKAIIKPQYV-DNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQE  239 (608)
T ss_dssp             HTSCCCEEECCCT-TTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSC
T ss_pred             HHhhhhhhchhhh-hhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhC
Confidence                  0111110 000                       1244567888999999999999999999 79999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      |+++||||||+|||+.+...+.. +++.+.+.|.|+|++||+++ +..+||++..+.+
T Consensus       240 p~llllDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~  296 (608)
T 3j16_B          240 ADVYMFDEPSSYLDVKQRLNAAQ-IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYG  296 (608)
T ss_dssp             CSEEEEECTTTTCCHHHHHHHHH-HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred             CCEEEEECcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            99999999999999999999998 66677777899999999987 6678998887754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.88  E-value=1.8e-22  Score=236.85  Aligned_cols=162  Identities=15%  Similarity=0.190  Sum_probs=129.8

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH--hhhh---hhhh-hceeecCCC---CCCccH
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL--GLAS---LMSK-AGLYLPAKN---HPRLPW  394 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--gl~~---~~a~-~G~~vp~~~---~~~l~~  394 (623)
                      .+...|++++|++..+  ++||++.+| ++++|+||||||||||||+|  |.+.   .... ...|+|+..   ...++.
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~G-e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv  513 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRA-RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV  513 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence            4666799999998766  999999999 99999999999999999999  3221   0000 113566542   112222


Q ss_pred             --------------HHHHHHHcCCc-hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974          395 --------------FDLILADIGDH-QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       395 --------------~d~i~~~ig~~-~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~  458 (623)
                                    +..++..+|+. +..++++++|||||+ |+.++++++.+|++|||||||+|||+.....+...+.+
T Consensus       514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence                          33457788884 678999999999999 89999999999999999999999999999999884443


Q ss_pred             HHhcCCcEEEEEcCchh-HHhhccccceeeCceEE
Q 006974          459 YLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATE  492 (623)
Q Consensus       459 ~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~  492 (623)
                          .|.|+|++||+.+ +..+|++++.+.+|++.
T Consensus       594 ----~g~tvIivSHdl~~l~~~adrii~L~~G~iv  624 (986)
T 2iw3_A          594 ----CGITSITISHDSVFLDNVCEYIINYEGLKLR  624 (986)
T ss_dssp             ----SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             ----CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence                4889999999988 56799999999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.88  E-value=4.1e-23  Score=242.25  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=79.7

Q ss_pred             HHHHHHcCCchh--hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974          396 DLILADIGDHQS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       396 d~i~~~ig~~~~--~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH  472 (623)
                      ++++..+|+...  .++.+++|||||+ |++++++++.+|++|||||||+|||+.....+...+    .+.++++|++||
T Consensus       881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L----~~~g~tVIiISH  956 (986)
T 2iw3_A          881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL----KEFEGGVIIITH  956 (986)
T ss_dssp             HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHH----HSCSSEEEEECS
T ss_pred             HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHH----HHhCCEEEEEEC
Confidence            456778888653  5789999999999 899999999999999999999999999988777643    444779999999


Q ss_pred             chhH-HhhccccceeeCceEEE
Q 006974          473 YADL-SCLKDKDTRFENAATEF  493 (623)
Q Consensus       473 ~~~l-~~~~~~~~~i~~g~~~~  493 (623)
                      +.++ ..+|++++.+.+|++..
T Consensus       957 D~e~v~~l~DrVivL~~G~Iv~  978 (986)
T 2iw3_A          957 SAEFTKNLTEEVWAVKDGRMTP  978 (986)
T ss_dssp             CHHHHTTTCCEEECCBTTBCCC
T ss_pred             CHHHHHHhCCEEEEEECCEEEE
Confidence            9884 57999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.5e-22  Score=229.15  Aligned_cols=164  Identities=21%  Similarity=0.230  Sum_probs=124.1

Q ss_pred             ceeeeecCCc--cc-cccccccCCc----eEEEEEcCCCCCHHHHHHHH-hhhhhhhh------hceeecCCCCCCc--c
Q 006974          330 GSLSKGISDF--PV-PIDIKVECET----RVVVITGPNTGGKTASMKTL-GLASLMSK------AGLYLPAKNHPRL--P  393 (623)
Q Consensus       330 ~~l~~~y~~~--~v-~i~l~l~~g~----~~~~I~GpNgsGKSTlLk~i-gl~~~~a~------~G~~vp~~~~~~l--~  393 (623)
                      .++++.|++.  .+ +++|++.+|.    ++++|+||||||||||||+| |++.+.+.      ...|+|+.....+  +
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t  429 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT  429 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence            3455666542  22 7788877761    67999999999999999999 77665321      1246776532111  1


Q ss_pred             H-----------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 006974          394 W-----------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATS  455 (623)
Q Consensus       394 ~-----------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~a  455 (623)
                      +                 .+.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||+|||+.....+...
T Consensus       430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l  509 (608)
T 3j16_B          430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV  509 (608)
T ss_dssp             HHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence            2                 23456667777788999999999999 89999999999999999999999999999999995


Q ss_pred             HHHHHhcCCcEEEEEcCchh-HHhhccccceeeC--ceEEE
Q 006974          456 ILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN--AATEF  493 (623)
Q Consensus       456 ll~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~--g~~~~  493 (623)
                      +.+...+.|.|+|++|||++ +..+||+++.+.+  |.+..
T Consensus       510 l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~  550 (608)
T 3j16_B          510 IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH  550 (608)
T ss_dssp             HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred             HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence            54444456899999999988 5578999988875  45443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.86  E-value=1.1e-21  Score=219.44  Aligned_cols=155  Identities=15%  Similarity=0.069  Sum_probs=114.8

Q ss_pred             eeeeecCCccc-ccccccc-CCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh----------------------------
Q 006974          331 SLSKGISDFPV-PIDIKVE-CETRVVVITGPNTGGKTASMKTL-GLASLMSK----------------------------  379 (623)
Q Consensus       331 ~l~~~y~~~~v-~i~l~l~-~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~----------------------------  379 (623)
                      +++.+||.+.. -..+.+. +| ++++|+||||||||||||+| |++.+...                            
T Consensus         4 ~~~~~~~~~~f~l~~l~~~~~G-ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~   82 (538)
T 3ozx_A            4 EVIHRYKVNGFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY   82 (538)
T ss_dssp             CEEEESSTTSCEEECCCCCCTT-EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred             CCceecCCCceeecCCCCCCCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence            45677764332 3344443 67 99999999999999999999 65432100                            


Q ss_pred             ---hc-eeecCCCC-----CCcc------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          380 ---AG-LYLPAKNH-----PRLP------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       380 ---~G-~~vp~~~~-----~~l~------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                         .+ ...++...     ....            ..+.++..+|+....++.+++|||||+ |+++|++++.+|+++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illl  162 (538)
T 3ozx_A           83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIF  162 (538)
T ss_dssp             TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred             hcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence               00 00111000     0000            134677888999999999999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeC
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFEN  488 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~  488 (623)
                      ||||+|||+.+...+.. +++.+.+ |.|+|++||+++ +..+||++..+.+
T Consensus       163 DEPts~LD~~~~~~l~~-~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~  212 (538)
T 3ozx_A          163 DQPSSYLDVRERMNMAK-AIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYG  212 (538)
T ss_dssp             ESTTTTCCHHHHHHHHH-HHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             ECCcccCCHHHHHHHHH-HHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecC
Confidence            99999999999999998 6666766 899999999987 5678888777654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.85  E-value=3.4e-21  Score=221.62  Aligned_cols=95  Identities=23%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             HHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          399 LADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       399 ~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +..+|+.+. .++.+++|||||+ |+++|++++.+|+  +|||||||+||||.....+.. ++..+++.|.|+|++|||+
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~  264 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE  264 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCH
Confidence            455666543 5789999999999 8999999999988  999999999999999999999 6666777789999999999


Q ss_pred             hHHhhcccccee------eCceEEEe
Q 006974          475 DLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       475 ~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      ++...||+++.+      .+|++.+.
T Consensus       265 ~~~~~~d~ii~l~~g~~~~~G~i~~~  290 (670)
T 3ux8_A          265 DTMLAADYLIDIGPGAGIHGGEVVAA  290 (670)
T ss_dssp             HHHHHCSEEEEECSSSGGGCCSEEEE
T ss_pred             HHHhhCCEEEEecccccccCCEEEEe
Confidence            977789999888      67777653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.84  E-value=1.2e-20  Score=230.73  Aligned_cols=168  Identities=14%  Similarity=0.144  Sum_probs=130.0

Q ss_pred             CCcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hh
Q 006974          324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a  378 (623)
                      .+.++++||+++|++.   ++  ++||++.+| ++++|+||||||||||++++ |+..+                   +.
T Consensus      1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~G-e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A         1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKG-QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp             SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSS-SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred             CCcEEEEEEEEECCCCCCCeeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence            3579999999999753   34  999999999 99999999999999999999 66543                   11


Q ss_pred             hhceeecCCCCC-CccHHHH-----------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHh
Q 006974          379 KAGLYLPAKNHP-RLPWFDL-----------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       379 ~~G~~vp~~~~~-~l~~~d~-----------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l  428 (623)
                      +...|+||+... ..++.++                 .....+..+.+.           .+.+.||||++ |+++|+++
T Consensus      1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A         1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp             TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred             hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence            234588887521 1122222                 233334433332           23468999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|++|||||||+|+|+.....+..++ +.+ ..|+|+|++||+++....||++.++.+|++...
T Consensus      1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l-~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A         1187 VRQPHILLLDEATSALDTESEKVVQEAL-DKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp             HHCCSSEEEESCSSSCCHHHHHHHHHHH-HHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHH-HHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence            9999999999999999999999998855 444 347899999999986677999999999998754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.82  E-value=3.1e-20  Score=227.00  Aligned_cols=166  Identities=15%  Similarity=0.170  Sum_probs=127.2

Q ss_pred             CcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hh
Q 006974          325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SK  379 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~  379 (623)
                      +.++++||+++|++.   ++  ++||++++| ++++|+||||||||||++++ |+..+.                   .+
T Consensus       386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G-~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~  464 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSG-QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE  464 (1284)
T ss_dssp             CCEEEEEEEECCSSTTSCCSEEEEEEEECTT-CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             CeEEEEEEEEEcCCCCCCcceecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence            569999999999742   34  999999999 99999999999999999999 665431                   12


Q ss_pred             hceeecCCCCC-CccHHHHH---------------HHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCC
Q 006974          380 AGLYLPAKNHP-RLPWFDLI---------------LADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       380 ~G~~vp~~~~~-~l~~~d~i---------------~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ...+|||+... .-++.+++               ....+..+.           +.....+|||||+ |+++|++++.+
T Consensus       465 ~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~  544 (1284)
T 3g5u_A          465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN  544 (1284)
T ss_dssp             HEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred             heEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence            24588987521 11233333               222233222           2345568999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                      |+++||||||++||+.....+..+ ++.+. +|+|+|++||+++....||++.++.+|++..
T Consensus       545 p~iliLDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~  604 (1284)
T 3g5u_A          545 PKILLLDEATSALDTESEAVVQAA-LDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVE  604 (1284)
T ss_dssp             CSEEEEESTTCSSCHHHHHHHHHH-HHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHH-HHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence            999999999999999988877774 44444 4789999999998666799999999998754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.81  E-value=8.2e-20  Score=210.08  Aligned_cols=95  Identities=25%  Similarity=0.242  Sum_probs=80.8

Q ss_pred             HHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          399 LADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRE---SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       399 ~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~---~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      +..+|+.. ..++.+++|||||+ |+++|++++.+|   ++|||||||+||||.....+.. ++..+.+.|.|+|++|||
T Consensus       527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~~g~tvi~vtHd  605 (670)
T 3ux8_A          527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHN  605 (670)
T ss_dssp             HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCC
T ss_pred             HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCC
Confidence            44556543 45788999999999 899999998776   5999999999999999999999 566677778999999999


Q ss_pred             hhHHhhcccccee------eCceEEEe
Q 006974          474 ADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       474 ~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      +++...||+++.+      .+|++..+
T Consensus       606 ~~~~~~~d~i~~l~~~~g~~~G~i~~~  632 (670)
T 3ux8_A          606 LDVIKTADYIIDLGPEGGDRGGQIVAV  632 (670)
T ss_dssp             HHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred             HHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence            9977889999999      78888765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.80  E-value=1.2e-19  Score=222.43  Aligned_cols=167  Identities=14%  Similarity=0.162  Sum_probs=130.3

Q ss_pred             CCcEEEceeeeecCC---ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hh
Q 006974          324 NSEMTVGSLSKGISD---FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~---~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a  378 (623)
                      ++.++++||+|+|++   .++  ++||++++| +.++|+||+|||||||++++ |+..+                   +.
T Consensus       413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G-~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr  491 (1321)
T 4f4c_A          413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAG-QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR  491 (1321)
T ss_dssp             CCCEEEEEEEECCSSSTTSCSEEEEEEEECTT-CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred             CCcEEEEEeeeeCCCCCCCceeeceEEeecCC-cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence            357999999999963   344  999999999 99999999999999999999 65532                   12


Q ss_pred             hhceeecCCCCCCc--cHHHH---------------HHHHcCCchhhh-----------cccccccHHHH-HHHHHHHhc
Q 006974          379 KAGLYLPAKNHPRL--PWFDL---------------ILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       379 ~~G~~vp~~~~~~l--~~~d~---------------i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~l~  429 (623)
                      +...||||+.. .+  ++.++               .....++.+.+.           ..-..||||+| |+++|+++.
T Consensus       492 ~~i~~v~Q~~~-Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          492 KNVAVVSQEPA-LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             HHEEEECSSCC-CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred             hcccccCCcce-eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence            23458898862 21  12222               233334433332           34578999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||+++|+.....+..++.+ +.+ +.|+|++||.......||+++++++|++...
T Consensus       571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~-~~~-~~T~iiiaHrls~i~~aD~Iivl~~G~ive~  633 (1321)
T 4f4c_A          571 RNPKILLLDEATSALDAESEGIVQQALDK-AAK-GRTTIIIAHRLSTIRNADLIISCKNGQVVEV  633 (1321)
T ss_dssp             TCCSEEEEESTTTTSCTTTHHHHHHHHHH-HHT-TSEEEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred             cCCCEEEEecccccCCHHHHHHHHHHHHH-HhC-CCEEEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence            99999999999999999987777775544 443 7899999999998889999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.79  E-value=1e-19  Score=223.01  Aligned_cols=167  Identities=14%  Similarity=0.132  Sum_probs=129.4

Q ss_pred             CCcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hh
Q 006974          324 NSEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MS  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a  378 (623)
                      .|.++++||+++|++.   +|  ++||++++| +.++|+||+||||||+++++ ++..+                   +.
T Consensus      1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~G-e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A         1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPG-QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp             CCCEEEEEEEECCTTSCSSCSEEEEEEEECTT-CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred             CCeEEEEEEEEeCCCCCCCccccceeEEECCC-CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence            4679999999999642   35  999999999 99999999999999999999 55532                   12


Q ss_pred             hhceeecCCCCCCcc--H-----------------HHHHHHHcCCchhhh-----------cccccccHHHH-HHHHHHH
Q 006974          379 KAGLYLPAKNHPRLP--W-----------------FDLILADIGDHQSLE-----------QNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       379 ~~G~~vp~~~~~~l~--~-----------------~d~i~~~ig~~~~~~-----------~~~stfS~g~~-rl~~~~~  427 (623)
                      +.-.+|||++. .++  +                 +.+.+...++.+.+.           .+-+.|||||| |+++|++
T Consensus      1153 ~~i~~V~Qdp~-LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1153 SQIAIVSQEPT-LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             TTEEEECSSCC-CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             hheEEECCCCE-eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            23458898862 111  1                 223344445544332           23467999999 8999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++.+|++|||||||+++|+..-..+.+++.+ +. +++|+|++||.+.....||++.++++|++...
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~-~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDR-AR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTT-TS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEE
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHH-Hc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999998887775433 22 37899999999987778999999999998654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.79  E-value=4.6e-19  Score=206.66  Aligned_cols=97  Identities=25%  Similarity=0.227  Sum_probs=83.4

Q ss_pred             HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 006974          397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT  471 (623)
Q Consensus       397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~T  471 (623)
                      +++..+|+.. .+++.+++|||||+ |+++|++++.+   |+++||||||+|||+.....|.. ++..+.+.|.|||++|
T Consensus       827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~TVIvis  905 (972)
T 2r6f_A          827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIE  905 (972)
T ss_dssp             HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred             HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence            4566778776 67899999999999 79999999875   59999999999999999999999 5666777799999999


Q ss_pred             CchhHHhhcccccee------eCceEEEe
Q 006974          472 HYADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       472 H~~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      |++++...||+++.+      .+|++...
T Consensus       906 Hdl~~i~~aDrIivL~p~gG~~~G~Iv~~  934 (972)
T 2r6f_A          906 HNLDVIKTADYIIDLGPEGGDRGGQIVAV  934 (972)
T ss_dssp             CCHHHHTTCSEEEEECSSSTTSCCSEEEE
T ss_pred             CCHHHHHhCCEEEEEcCCCCCCCCEEEEe
Confidence            999977789999998      56777654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.79  E-value=5.2e-19  Score=205.71  Aligned_cols=97  Identities=21%  Similarity=0.185  Sum_probs=83.1

Q ss_pred             HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 006974          397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT  471 (623)
Q Consensus       397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~T  471 (623)
                      +++..+|+.. .+++.+++||||++ |+++|++++.+   |+|+||||||+|||+.+...|.. ++..+.+.|.|||++|
T Consensus       712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L~~~G~tVIvis  790 (842)
T 2vf7_A          712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKLVDAGNTVIAVE  790 (842)
T ss_dssp             HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred             HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEc
Confidence            3456677765 46889999999999 79999999885   79999999999999999999999 5666777899999999


Q ss_pred             CchhHHhhcccccee------eCceEEEe
Q 006974          472 HYADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       472 H~~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      |++++...||+++.+      .+|++.+.
T Consensus       791 Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~  819 (842)
T 2vf7_A          791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQ  819 (842)
T ss_dssp             CCHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred             CCHHHHHhCCEEEEECCCCCCCCCEEEEE
Confidence            999866889999999      57887654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.77  E-value=1e-19  Score=173.67  Aligned_cols=133  Identities=11%  Similarity=0.063  Sum_probs=89.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH--hhhhhh--hhhceeecCCCC-CCccH--HHHH------HHHcCCchhh
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL--GLASLM--SKAGLYLPAKNH-PRLPW--FDLI------LADIGDHQSL  408 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i--gl~~~~--a~~G~~vp~~~~-~~l~~--~d~i------~~~ig~~~~~  408 (623)
                      ++||++++| ++++|+||||||||||+|++  |...+-  .-.| ++++... ..+..  ++.+      ....|.....
T Consensus         1 ~vsl~i~~g-ei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   78 (171)
T 4gp7_A            1 SMKLTIPEL-SLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG-LMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVV   78 (171)
T ss_dssp             CEEEEEESS-EEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH-HHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CccccCCCC-EEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH-HhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            468899999 99999999999999999965  211110  0133 3344321 11111  1111      1223332222


Q ss_pred             hcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCcEEEEEc
Q 006974          409 EQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS----------------EGVALATSILQYLRDRVGLAVVTT  471 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~----------------~~~~l~~all~~l~~~~~~vii~T  471 (623)
                       ......|+|++ ++++|++++.+|.+++|||||+|+|+.                ....+.. ++..+.+.|.|+|++|
T Consensus        79 -~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~-~l~~l~~~g~tvi~vt  156 (171)
T 4gp7_A           79 -DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKK-SIKGLQREGFRYVYIL  156 (171)
T ss_dssp             -ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHH-HSTTHHHHTCSEEEEE
T ss_pred             -ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhh-hhhhHHhcCCcEEEEe
Confidence             23345588888 799999999999999999999999999                5566666 4455665689999999


Q ss_pred             CchhHHh
Q 006974          472 HYADLSC  478 (623)
Q Consensus       472 H~~~l~~  478 (623)
                      |+++...
T Consensus       157 H~~~~~~  163 (171)
T 4gp7_A          157 NSPEEVE  163 (171)
T ss_dssp             CSHHHHH
T ss_pred             CCHHHhh
Confidence            9988554

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.77  E-value=1.8e-18  Score=187.26  Aligned_cols=108  Identities=24%  Similarity=0.330  Sum_probs=82.2

Q ss_pred             ccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee----e
Q 006974          415 FSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF----E  487 (623)
Q Consensus       415 fS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i----~  487 (623)
                      +|||++ |+.++++++.+|  ++|||||||+|||+.....|.. ++..+. ++++||+|||+.++..+|++++.+    .
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~  373 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVE  373 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEecc
Confidence            599999 799999999999  9999999999999999999999 455566 488999999999988899999999    8


Q ss_pred             CceEEEecCccccccccccCCCCCcHHHHHHHHC-C-CCHHHHHHHHHH
Q 006974          488 NAATEFSLETLRPTYRILWGSTGDSNALNIAKSI-G-FDRKIIQRAQKL  534 (623)
Q Consensus       488 ~g~~~~~~~~l~~~y~l~~g~~~~s~a~~ia~~~-g-~~~~i~~~a~~~  534 (623)
                      +|++......+.          ......++|+++ | +.+..+..|++.
T Consensus       374 ~G~~~~~~~~l~----------~~~~~~ei~~~~~g~~~~~~~~~a~~~  412 (415)
T 4aby_A          374 DGRTVSHVRLLT----------GDERLEEIARMLSGNTSEAALEHAREL  412 (415)
T ss_dssp             TTEEEEEEEECC----------SHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCceEEEEEECC----------chhhHHHHHHHhcCCCCHHHHHHHHHH
Confidence            887654422111          112234566655 3 455555566554

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.77  E-value=2.6e-18  Score=183.63  Aligned_cols=83  Identities=24%  Similarity=0.203  Sum_probs=74.2

Q ss_pred             hcccccccHHHH-HHHHHHHhc------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974          409 EQNLSTFSGHIS-RIVDILELV------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD  481 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l~------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~  481 (623)
                      ++++++|||||+ |++++++++      .+|+++||||||+||||.....+.. ++..+.+.|.|+|++||++++...|+
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l~~~g~tvi~itH~~~~~~~~d  352 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKELERLNKVIVFITHDREFSEAFD  352 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEecchHHHHhCC
Confidence            467889999999 788888877      7999999999999999999999998 66667777899999999999888899


Q ss_pred             ccceeeCceEE
Q 006974          482 KDTRFENAATE  492 (623)
Q Consensus       482 ~~~~i~~g~~~  492 (623)
                      +++.+.+|++.
T Consensus       353 ~~~~l~~G~i~  363 (365)
T 3qf7_A          353 RKLRITGGVVV  363 (365)
T ss_dssp             CEEEEETTEEC
T ss_pred             EEEEEECCEEE
Confidence            99999999864

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.76  E-value=3.2e-18  Score=200.64  Aligned_cols=97  Identities=28%  Similarity=0.271  Sum_probs=82.0

Q ss_pred             HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 006974          397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR---ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTT  471 (623)
Q Consensus       397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~---~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~T  471 (623)
                      +++..+|+.. .+.+++++|||||+ |+++|++++.+   |+|+||||||+|||+.+...|.. ++..+.+.|.|||++|
T Consensus       787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~-lL~~L~~~G~TVIvI~  865 (916)
T 3pih_A          787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE-VLHRLVDRGNTVIVIE  865 (916)
T ss_dssp             HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEC
T ss_pred             HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEe
Confidence            3455667654 35788999999999 89999999865   47999999999999999999999 5666777899999999


Q ss_pred             CchhHHhhcccccee------eCceEEEe
Q 006974          472 HYADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       472 H~~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      |++++...||+++.+      .+|++.+.
T Consensus       866 HdL~~i~~ADrIivLgp~gg~~~G~Iv~~  894 (916)
T 3pih_A          866 HNLDVIKNADHIIDLGPEGGKEGGYIVAT  894 (916)
T ss_dssp             CCHHHHTTCSEEEEEESSSGGGCCEEEEE
T ss_pred             CCHHHHHhCCEEEEecCCCCCCCCEEEEE
Confidence            999977779999999      67888765

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.3e-19  Score=198.88  Aligned_cols=156  Identities=14%  Similarity=0.013  Sum_probs=112.2

Q ss_pred             CcEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh-h-----------ceeecCCCC--
Q 006974          325 SEMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-A-----------GLYLPAKNH--  389 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~-~-----------G~~vp~~~~--  389 (623)
                      .+++++||++.|+    +++|++.+| ++++|+||||||||||+|+| |++.+... .           ..++|+...  
T Consensus       117 ~mi~~~nl~~~y~----~vsl~i~~G-e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~  191 (460)
T 2npi_A          117 TMKYIYNLHFMLE----KIRMSNFEG-PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISAT  191 (460)
T ss_dssp             THHHHHHHHHHHH----HHHHHSSSC-CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEE
T ss_pred             chhhhhhhhehhh----cCceEeCCC-CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhc
Confidence            3577889999996    588899999 99999999999999999999 77655422 1           124555421  


Q ss_pred             ---CCccHHHHH------------------HHHcCCchhhhcccccccHHHH-HHHHHHH--hcCCCcE----EEEeC-C
Q 006974          390 ---PRLPWFDLI------------------LADIGDHQSLEQNLSTFSGHIS-RIVDILE--LVSRESL----VLIDE-I  440 (623)
Q Consensus       390 ---~~l~~~d~i------------------~~~ig~~~~~~~~~stfS~g~~-rl~~~~~--l~~~~~L----lLLDE-p  440 (623)
                         ..+...+++                  +..+|+.+..+  ..+|||||+ |++++++  ++.+|++    +|||| |
T Consensus       192 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP  269 (460)
T 2npi_A          192 PISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS  269 (460)
T ss_dssp             ECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred             ccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence               011111111                  22234433333  789999999 8999999  9999999    99999 9


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh--HH-----hhccc-----cceee-CceEE
Q 006974          441 GSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD--LS-----CLKDK-----DTRFE-NAATE  492 (623)
Q Consensus       441 ~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~--l~-----~~~~~-----~~~i~-~g~~~  492 (623)
                      |+|+|+. ...|..    .+.+.+.++|++||+++  +.     .+|++     ++.+. +|.+.
T Consensus       270 ts~LD~~-~~~l~~----l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv  329 (460)
T 2npi_A          270 ISQLDEN-LAELHH----IIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS  329 (460)
T ss_dssp             GGGSCSS-CHHHHH----HHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred             ccccChh-HHHHHH----HHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence            9999998 333333    33334778999999976  33     68888     77787 77665

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.67  E-value=1.8e-16  Score=166.33  Aligned_cols=83  Identities=19%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             hcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974          409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD  483 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~  483 (623)
                      +..++.||+|++ +++++++++    .+|+++||||||++||+.....+.. ++..+. .+.++|++||+.++..+||+.
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~vi~~tH~~~~~~~~d~~  291 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQFIVITHNKIVMEAADLL  291 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence            456789999999 688888775    6889999999999999999999998 555564 478999999998877888875


Q ss_pred             --ceeeCceEEE
Q 006974          484 --TRFENAATEF  493 (623)
Q Consensus       484 --~~i~~g~~~~  493 (623)
                        +.+.+|.-.+
T Consensus       292 ~~v~~~~g~s~~  303 (322)
T 1e69_A          292 HGVTMVNGVSAI  303 (322)
T ss_dssp             EEEEESSSCEEE
T ss_pred             EEEEEeCCEEEE
Confidence              5566664433

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.66  E-value=2.8e-17  Score=158.07  Aligned_cols=121  Identities=14%  Similarity=0.026  Sum_probs=82.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH-hhhhhhhhhce---------------eecCCCCCCccHHHHHHHHcCCc--hhhhccccc
Q 006974          353 VVVITGPNTGGKTASMKTL-GLASLMSKAGL---------------YLPAKNHPRLPWFDLILADIGDH--QSLEQNLST  414 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~---------------~vp~~~~~~l~~~d~i~~~ig~~--~~~~~~~st  414 (623)
                      .++|+||||||||||+|++ |++.+. -.|.               |+|+....    .++++..++..  ...++.+++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~-~~g~~~~~~~~~~~~~~ig~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRTGFRIITTEG----KKKIFSSKFFTSKKLVGSYGVN   76 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG-EEEEEEEEEC------CCEEEEEETTC----CEEEEEETTCCCSSEETTEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-CCCEEhhhhccccccceeEEEeecCcH----HHHHHHhhcCCccccccccccC
Confidence            5899999999999999999 666421 1221               22221100    01111111111  245677889


Q ss_pred             ccHHHH-HHHHHHH-----hcCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC---chh-HHhhccc
Q 006974          415 FSGHIS-RIVDILE-----LVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAVVTTH---YAD-LSCLKDK  482 (623)
Q Consensus       415 fS~g~~-rl~~~~~-----l~~~~~LlLLDE--p~~glD~~~~~~l~~all~~l~~~~~~vii~TH---~~~-l~~~~~~  482 (623)
                      ||+||+ ++.++++     ++.+|+++||||  |++++|+.....+...    +.+.+.++|++||   +.+ +..++++
T Consensus        77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~----l~~~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A           77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI----MHDPNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH----HTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH----HhcCCCeEEEEEccCCCchHHHHHHhc
Confidence            999999 7888886     899999999999  9999999988777663    3334667888886   555 4556765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=7.3e-18  Score=166.24  Aligned_cols=122  Identities=15%  Similarity=0.160  Sum_probs=73.0

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh----------------hhceeecCCCCCCc-cHHHHHHHHcC---Cc
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHPRL-PWFDLILADIG---DH  405 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a----------------~~G~~vp~~~~~~l-~~~d~i~~~ig---~~  405 (623)
                      +.+| ++++|+||||||||||||++ |+ .+..                +...|+|+.....+ .++...+..+.   ..
T Consensus        19 i~~G-e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~   96 (208)
T 3b85_A           19 IDTN-TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP   96 (208)
T ss_dssp             HHHC-SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred             ccCC-CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence            4788 89999999999999999999 77 5421                11224555421112 11111111111   11


Q ss_pred             hhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974          406 QSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC  478 (623)
Q Consensus       406 ~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~  478 (623)
                      +.+..-+.. +.||+ |+++|++++.+|+++||||||+|    ....+.. ++..+ +.+.++| +|||.+...
T Consensus        97 ~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~-~l~~l-~~g~tii-vtHd~~~~~  162 (208)
T 3b85_A           97 EVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM-FLTRL-GFGSKMV-VTGDITQVD  162 (208)
T ss_dssp             THHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH-HHTTB-CTTCEEE-EEEC-----
T ss_pred             HHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH-HHHHh-cCCCEEE-EECCHHHHh
Confidence            111111111 22777 89999999999999999999999    5666666 44444 5578888 999987543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.63  E-value=1.4e-15  Score=160.69  Aligned_cols=78  Identities=23%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             hcccccccHHHHH-------HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974          409 EQNLSTFSGHISR-------IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD  481 (623)
Q Consensus       409 ~~~~stfS~g~~r-------l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~  481 (623)
                      +++++.|||||++       ++++++++.+|+++||||||+||||.....+.. ++..+...+.++|++||+.++..+|+
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH~~~~~~~~d  321 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDAAD  321 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEChHHHHHhCC
Confidence            4578899999984       344556788999999999999999999999998 55556666789999999988888898


Q ss_pred             ccceee
Q 006974          482 KDTRFE  487 (623)
Q Consensus       482 ~~~~i~  487 (623)
                      +++.+.
T Consensus       322 ~~~~l~  327 (339)
T 3qkt_A          322 HVIRIS  327 (339)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            877653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.54  E-value=3.5e-16  Score=169.04  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=100.2

Q ss_pred             cccccccCCce--------------------EEEEEcCCCCCHHHHHHHH-hhhhhhh-----------hhceeecCCCC
Q 006974          342 PIDIKVECETR--------------------VVVITGPNTGGKTASMKTL-GLASLMS-----------KAGLYLPAKNH  389 (623)
Q Consensus       342 ~i~l~l~~g~~--------------------~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------~~G~~vp~~~~  389 (623)
                      ++++++.+| +                    +++|+||||+|||||||++ |+..+-.           +. .++|+...
T Consensus        41 ~is~~i~~G-e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~  118 (413)
T 1tq4_A           41 LIELRMRAG-NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPN  118 (413)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSS
T ss_pred             hccceecCC-CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccc
Confidence            899999999 8                    9999999999999999999 6654311           11 24444321


Q ss_pred             -CCcc------------HHHHHHHHcCCchhhhcccccccHH--HH-HHHHHHHhcC----------CCcEEEEeCCCCC
Q 006974          390 -PRLP------------WFDLILADIGDHQSLEQNLSTFSGH--IS-RIVDILELVS----------RESLVLIDEIGSG  443 (623)
Q Consensus       390 -~~l~------------~~d~i~~~ig~~~~~~~~~stfS~g--~~-rl~~~~~l~~----------~~~LlLLDEp~~g  443 (623)
                       ..+.            .++.++..+++.+. +..+. +|+|  |+ ++.++.+++.          +|+++++||||+|
T Consensus       119 ~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsg  196 (413)
T 1tq4_A          119 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGE  196 (413)
T ss_dssp             CTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTC
T ss_pred             cCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccccc
Confidence             0111            14677888876653 33333 9998  87 7888888777          9999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH----hcC----CcEEEEEcCchh---HHhhccccc
Q 006974          444 TDPSEGVALATSILQYL----RDR----VGLAVVTTHYAD---LSCLKDKDT  484 (623)
Q Consensus       444 lD~~~~~~l~~all~~l----~~~----~~~vii~TH~~~---l~~~~~~~~  484 (623)
                      +||.....+...+.+..    .+.    ..+++++||+.+   +..+++.+.
T Consensus       197 LD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          197 PQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            99999999988555543    232    256889999864   667777654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.54  E-value=4.8e-15  Score=165.64  Aligned_cols=159  Identities=11%  Similarity=0.027  Sum_probs=113.0

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhc-eeecCCCCCCccHHHHH------
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAG-LYLPAKNHPRLPWFDLI------  398 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G-~~vp~~~~~~l~~~d~i------  398 (623)
                      +++++++.+|++-.--++..+.+| ++++|+||||+|||||++++ |+........ .+.+++.  .-.++.++      
T Consensus       258 ~~~~~l~~g~~~ld~vL~g~i~~G-~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~--~~~l~~~~~~~g~~  334 (525)
T 1tf7_A          258 SSNVRVSSGVVRLDEMCGGGFFKD-SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--RAQLLRNAYSWGMD  334 (525)
T ss_dssp             CCCCEECCSCHHHHHHTTSSEESS-CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC--HHHHHHHHHTTSCC
T ss_pred             cccceeecChHHHHHHhCCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC--HHHHHHHHHHcCCC
Confidence            456677766642100134578899 99999999999999999999 5554432212 2344432  11112111      


Q ss_pred             ---HHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhcCCcEEEE
Q 006974          399 ---LADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS-----EGVALATSILQYLRDRVGLAVV  469 (623)
Q Consensus       399 ---~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~-----~~~~l~~all~~l~~~~~~vii  469 (623)
                         +...|.....+..+.+||+|++ ++.+++.+..+|++||+| |++|+|+.     .+..+.. ++..+++.|.++|+
T Consensus       335 ~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~-ll~~l~~~g~tvil  412 (525)
T 1tf7_A          335 FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG-VTGYAKQEEITGLF  412 (525)
T ss_dssp             HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH-HHHHHHHTTCEEEE
T ss_pred             HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH-HHHHHHhCCCEEEE
Confidence               1123334445567788999999 788888899999999999 99999998     7777777 77788888999999


Q ss_pred             EcCch----------h-HHhhccccceeeCce
Q 006974          470 TTHYA----------D-LSCLKDKDTRFENAA  490 (623)
Q Consensus       470 ~TH~~----------~-l~~~~~~~~~i~~g~  490 (623)
                      +||+.          . +..+||.++.+.++.
T Consensus       413 vsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          413 TNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             EEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             EECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            99997          4 556889888776653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.51  E-value=4.5e-16  Score=152.68  Aligned_cols=59  Identities=12%  Similarity=-0.173  Sum_probs=46.8

Q ss_pred             HhcCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-cCCcEEEEEcCchh-HHhhcccccee
Q 006974          427 ELVSRESLVLIDEIGSGT----DPSEGVALATSILQYLR-DRVGLAVVTTHYAD-LSCLKDKDTRF  486 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~gl----D~~~~~~l~~all~~l~-~~~~~vii~TH~~~-l~~~~~~~~~i  486 (623)
                      +++.+|++++||||++|+    |+.....+... +..+. +.+.++|++|||++ ...+|+++..+
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~-l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l  201 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTA-RIELAAQGDFDKVVVNRRLESACAELVSLLVG  201 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH-HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence            356789999999999997    77788888884 45565 45789999999987 55789888765

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.47  E-value=1.1e-14  Score=154.40  Aligned_cols=153  Identities=9%  Similarity=0.102  Sum_probs=107.6

Q ss_pred             cEEEceeeeecC-Ccc-c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-----------------------
Q 006974          326 EMTVGSLSKGIS-DFP-V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS-----------------------  378 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~-v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-----------------------  378 (623)
                      .++.+++++.|+ +.. + ++ |.+.+| ++++|+||||+||||||++| |+...-.                       
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~G-q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~  122 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGIG-QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS  122 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEETT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred             CeeecccceecCCCCEEEEee-eeecCC-CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence            456788999997 433 4 66 999999 99999999999999999999 5543210                       


Q ss_pred             ---hhceeecCCCCCCccHHHHH---HHHcCCchh-hh---------cccccccHHHHHHHHHHHhcCCCcEEEEeCCCC
Q 006974          379 ---KAGLYLPAKNHPRLPWFDLI---LADIGDHQS-LE---------QNLSTFSGHISRIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       379 ---~~G~~vp~~~~~~l~~~d~i---~~~ig~~~~-~~---------~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                         +...++++..   .+...++   +..++..+. .+         ..++.||+|+++++++   +.+|.+      |+
T Consensus       123 ~~~~~v~~~~~~~---~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~  190 (347)
T 2obl_A          123 TLSKCVLVVTTSD---RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RG  190 (347)
T ss_dssp             HHTTEEEEEECTT---SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BT
T ss_pred             hhhceEEEEECCC---CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------cc
Confidence               0011222221   1112211   111111111 11         5688999999878877   466666      89


Q ss_pred             CCCHHHHHHHHHHHHHHHhc--CCc-----EEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          443 GTDPSEGVALATSILQYLRD--RVG-----LAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       443 glD~~~~~~l~~all~~l~~--~~~-----~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+||.....+.. +++.+.+  .|.     ||+++|||++ ..+|+++..+.+|++..+
T Consensus       191 Gldp~~~~~l~~-ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~  247 (347)
T 2obl_A          191 GFPPSVFSSLPK-LLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLT  247 (347)
T ss_dssp             TBCHHHHHHHHH-HHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBC
T ss_pred             CCCHHHHHHHHH-HHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEe
Confidence            999999999988 7777764  466     8899999998 778999999999998876

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.45  E-value=4.3e-15  Score=156.52  Aligned_cols=136  Identities=14%  Similarity=0.078  Sum_probs=90.1

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCch
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ  406 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~  406 (623)
                      ++++++ |  ..+  ++++.+.+| ++++|+|||||||||||+++        .|.+.|..+...+...+    .+... 
T Consensus       151 ~~~v~f-y--~~~l~~l~~~i~~g-~~v~i~G~~GsGKTTll~~l--------~g~~~~~~g~i~i~~~~----e~~~~-  213 (330)
T 2pt7_A          151 YNLLDN-K--EQAISAIKDGIAIG-KNVIVCGGTGSGKTTYIKSI--------MEFIPKEERIISIEDTE----EIVFK-  213 (330)
T ss_dssp             TTTSTT-H--HHHHHHHHHHHHHT-CCEEEEESTTSCHHHHHHHG--------GGGSCTTSCEEEEESSC----CCCCS-
T ss_pred             cCchhh-H--HHHHhhhhhhccCC-CEEEEECCCCCCHHHHHHHH--------hCCCcCCCcEEEECCee----ccccc-
Confidence            445555 5  224  889999999 89999999999999999999        55444443321111000    00110 


Q ss_pred             hhhccccccc-HHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974          407 SLEQNLSTFS-GHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT  484 (623)
Q Consensus       407 ~~~~~~stfS-~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~  484 (623)
                      .....++-++ +|++ +..+++++..+|+++|+|||++.       .+.. +++.+...+.++|+|||..+....+++..
T Consensus       214 ~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~-~l~~~~~g~~tvi~t~H~~~~~~~~dri~  285 (330)
T 2pt7_A          214 HHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSS-------EAYD-FYNVLCSGHKGTLTTLHAGSSEEAFIRLA  285 (330)
T ss_dssp             SCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHH-HHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred             cchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHH-HHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence            0111222222 5676 78889999999999999999982       2333 44555543447999999988778888887


Q ss_pred             eeeCc
Q 006974          485 RFENA  489 (623)
Q Consensus       485 ~i~~g  489 (623)
                      .+.+|
T Consensus       286 ~l~~g  290 (330)
T 2pt7_A          286 NMSSS  290 (330)
T ss_dssp             HHHHT
T ss_pred             ehhcC
Confidence            76655

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.43  E-value=1e-15  Score=159.10  Aligned_cols=139  Identities=11%  Similarity=-0.006  Sum_probs=98.0

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC--------CCcc-
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH--------PRLP-  393 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~--------~~l~-  393 (623)
                      .++++||++.|+ ..+  +++|++++| ++++|+||||||||||+++| |++  -+++-.++|+...        ..+. 
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~G-e~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~  176 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKK-NCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAAL  176 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTC-SEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEE
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCC-CEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhcc
Confidence            356789999997 444  999999999 99999999999999999999 665  1122224454421        0111 


Q ss_pred             ------HHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Q 006974          394 ------WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLA  467 (623)
Q Consensus       394 ------~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~v  467 (623)
                            .....+..+ +.+-++  ...||||+++.  +++++.+|++||    |++||+.....+..             
T Consensus       177 ~~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~~-------------  234 (305)
T 2v9p_A          177 VDDATHACWRYFDTY-LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYLY-------------  234 (305)
T ss_dssp             EEEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGGG-------------
T ss_pred             CccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHHH-------------
Confidence                  122333332 222233  67999999955  888999999999    99999988777642             


Q ss_pred             EEEcCchhHHhhccccceeeCceEEE
Q 006974          468 VVTTHYADLSCLKDKDTRFENAATEF  493 (623)
Q Consensus       468 ii~TH~~~l~~~~~~~~~i~~g~~~~  493 (623)
                        .||+.....+||++ .+.+|++..
T Consensus       235 --ltH~~~~~~~aD~i-vl~~G~iv~  257 (305)
T 2v9p_A          235 --LHSRVQTFRFEQPC-TDESGEQPF  257 (305)
T ss_dssp             --GTTTEEEEECCCCC-CCC---CCC
T ss_pred             --HhCCHHHHHhCCEE-EEeCCEEEE
Confidence              18998877789999 999988754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.43  E-value=2.2e-13  Score=134.31  Aligned_cols=143  Identities=13%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh------ceeecCCCCCCccHHHHHHHHcCCch-hhhcc---ccc
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA------GLYLPAKNHPRLPWFDLILADIGDHQ-SLEQN---LST  414 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~------G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~---~st  414 (623)
                      -+.+| ++++|+||||||||||++++ |++.+-...      ..++..........+..++..++... .+..+   ...
T Consensus        21 gi~~G-~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   99 (231)
T 4a74_A           21 GIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA   99 (231)
T ss_dssp             SEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred             CCCCC-cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence            46788 99999999999999999999 444332111      12333322111122344555555432 22222   223


Q ss_pred             ccHHHH-H-HHHHHHh-------cCCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          415 FSGHIS-R-IVDILEL-------VSRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       415 fS~g~~-r-l~~~~~l-------~~~~~LlLLDEp~~glD~~~------------~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      ++...+ + +..+...       ..+|++|+||||++++|+..            ...+...+.+..++.|+++|++||+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~  179 (231)
T 4a74_A          100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV  179 (231)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            343332 2 3333332       45999999999999999841            1255555555555668999999995


Q ss_pred             hh-----HHhhccccceeeCc
Q 006974          474 AD-----LSCLKDKDTRFENA  489 (623)
Q Consensus       474 ~~-----l~~~~~~~~~i~~g  489 (623)
                      ..     +..+|+..+.+.++
T Consensus       180 ~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          180 QANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             C---------CCSEEEEEEEC
T ss_pred             ccCcchhhHhhceEEEEEEec
Confidence            43     45677777776653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.41  E-value=7.8e-13  Score=136.50  Aligned_cols=148  Identities=11%  Similarity=0.018  Sum_probs=87.1

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhh-hceeecCCCCCCccHHHHHHHHc-CCc-------------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSK-AGLYLPAKNHPRLPWFDLILADI-GDH-------------  405 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~-~G~~vp~~~~~~l~~~d~i~~~i-g~~-------------  405 (623)
                      ++++.+.+| ++++|+||||+|||||++++ |.+..... ...|+..+. ..-.+..++.... +..             
T Consensus        27 ~i~~~l~~G-~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~-~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~  104 (296)
T 1cr0_A           27 DKTLGARGG-EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE-SVEETAEDLIGLHNRVRLRQSDSLKREIIE  104 (296)
T ss_dssp             HHHCSBCTT-CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS-CHHHHHHHHHHHHTTCCGGGCHHHHHHHHH
T ss_pred             HHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC-CHHHHHHHHHHHHcCCChhhccccccCCCC
Confidence            778899999 99999999999999999999 44433211 112322211 0000111111100 000             


Q ss_pred             ----------------hhhhcccccccHHH-HHHHHHHHhcCCCcEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh
Q 006974          406 ----------------QSLEQNLSTFSGHI-SRIVDILELVSRESLVLIDEIGS---G---TDP-SEGVALATSILQYLR  461 (623)
Q Consensus       406 ----------------~~~~~~~stfS~g~-~rl~~~~~l~~~~~LlLLDEp~~---g---lD~-~~~~~l~~all~~l~  461 (623)
                                      -.+...+..++.++ ++...+++++.+|++||||||++   +   +|+ .....+...+.+..+
T Consensus       105 ~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~  184 (296)
T 1cr0_A          105 NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAK  184 (296)
T ss_dssp             HTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                            00111224567766 34444777889999999999999   4   344 455566664444334


Q ss_pred             cCCcEEEEEcCch-----------------------hHHhhccccceeeCceE
Q 006974          462 DRVGLAVVTTHYA-----------------------DLSCLKDKDTRFENAAT  491 (623)
Q Consensus       462 ~~~~~vii~TH~~-----------------------~l~~~~~~~~~i~~g~~  491 (623)
                      +.+++||++||+.                       .+..+||.++.+.++..
T Consensus       185 ~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          185 STGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            5589999999995                       35568888888876653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.40  E-value=1.6e-12  Score=127.86  Aligned_cols=140  Identities=13%  Similarity=0.042  Sum_probs=86.5

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHHHHcCCc-hhhh--------c-----
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSLE--------Q-----  410 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~--------~-----  410 (623)
                      .+.+| ++++|+||||+|||||+++++ .+........|+....  ....+...+..+|.. +...        .     
T Consensus        19 gi~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (235)
T 2w0m_A           19 GIPQG-FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE--SRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEK   95 (235)
T ss_dssp             SEETT-CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS--CHHHHHHHHHHTTCCCGGGBTTTEEEEECCC---
T ss_pred             CCcCC-CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc--CHHHHHHHHHHhcchHHHHhhCCEEEEecccccc
Confidence            57788 899999999999999999993 4433222223433322  111111222234421 1100        0     


Q ss_pred             ----ccccccHHHH-HHHHHHHhcCCCc--EEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEcCch-------
Q 006974          411 ----NLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYA-------  474 (623)
Q Consensus       411 ----~~stfS~g~~-rl~~~~~l~~~~~--LlLLDEp~~gl--D~~~~~~l~~all~~l~~~~~~vii~TH~~-------  474 (623)
                          .....|.++. +.........+|+  +|++|||++++  |+.....+...+.+...+.++++|++||+.       
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~  175 (235)
T 2w0m_A           96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAF  175 (235)
T ss_dssp             -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC---------
T ss_pred             CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccc
Confidence                0123366665 3333333446899  99999999877  998888888866655566789999999998       


Q ss_pred             -h-HHhhccccceeeC
Q 006974          475 -D-LSCLKDKDTRFEN  488 (623)
Q Consensus       475 -~-l~~~~~~~~~i~~  488 (623)
                       . +..+||.++.+..
T Consensus       176 ~~~~~~~~d~vi~l~~  191 (235)
T 2w0m_A          176 GFGVEHVADGIIRFRR  191 (235)
T ss_dssp             --CHHHHCSEEEEEEE
T ss_pred             ccchheeeeEEEEEEE
Confidence             2 6678888877654

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.40  E-value=8.1e-13  Score=123.11  Aligned_cols=79  Identities=23%  Similarity=0.243  Sum_probs=67.8

Q ss_pred             hhhcccccccHHHH-HHHHH------HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          407 SLEQNLSTFSGHIS-RIVDI------LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       407 ~~~~~~stfS~g~~-rl~~~------~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      ..++++++|||||+ +++++      ++++.+|+++||||||+|||+.....+.. ++..+.+.|.++|++||+.++..+
T Consensus        50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~~~~~  128 (148)
T 1f2t_B           50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELKDA  128 (148)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGGGG
T ss_pred             cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHHHccCCEEEEEEChHHHHHh
Confidence            35678999999999 67665      56789999999999999999999999998 555566668899999999988889


Q ss_pred             cccccee
Q 006974          480 KDKDTRF  486 (623)
Q Consensus       480 ~~~~~~i  486 (623)
                      |++++.+
T Consensus       129 ~d~ii~l  135 (148)
T 1f2t_B          129 ADHVIRI  135 (148)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEE
Confidence            9988887

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.39  E-value=7.6e-14  Score=155.94  Aligned_cols=142  Identities=16%  Similarity=0.142  Sum_probs=89.2

Q ss_pred             cccc-cccCCceEEEEEcCCCCCHHHHHHH--H-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCc-hhh--------
Q 006974          342 PIDI-KVECETRVVVITGPNTGGKTASMKT--L-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSL--------  408 (623)
Q Consensus       342 ~i~l-~l~~g~~~~~I~GpNgsGKSTlLk~--i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~--------  408 (623)
                      ++++ .+.+| ++++|+||||||||||+++  + |+..+-. -..++-... .... .......+|.. |..        
T Consensus        30 ~i~~G~i~~G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~-g~i~v~g~~-~~~~-~~~~~~~~g~~~q~~~~~~~l~~  105 (525)
T 1tf7_A           30 DISHGGLPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFDE-PGVFVTFEE-TPQD-IIKNARSFGWDLAKLVDEGKLFI  105 (525)
T ss_dssp             HHTTSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHCC-CEEEEESSS-CHHH-HHHHHGGGTCCHHHHHHTTSEEE
T ss_pred             HhcCCCCCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCC-CEEEEEEeC-CHHH-HHHHHHHcCCChHHhhccCcEEE
Confidence            8999 99999 9999999999999999999  4 6554321 112332221 1100 11111222211 100        


Q ss_pred             ---------hcccccccHHHHHHHHHHHh-cCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          409 ---------EQNLSTFSGHISRIVDILEL-VSRESLVLIDEIGS-----GTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       409 ---------~~~~stfS~g~~rl~~~~~l-~~~~~LlLLDEp~~-----glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                               ..-+..+.-+...-..+..+ ..+|.+|+||||++     ++|+..+..+.. ++..+++.|.|+|++||+
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~-ll~~l~~~g~tvl~itH~  184 (525)
T 1tf7_A          106 LDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR-LVARLKQIGATTVMTTER  184 (525)
T ss_dssp             EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH-HHHHHHHHTCEEEEEEEC
T ss_pred             EecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH-HHHHHHHCCCEEEEEecC
Confidence                     01112232222211222222 36899999999987     468999999888 777788889999999999


Q ss_pred             hhH----------HhhccccceeeC
Q 006974          474 ADL----------SCLKDKDTRFEN  488 (623)
Q Consensus       474 ~~l----------~~~~~~~~~i~~  488 (623)
                      .+.          ..+||+++.+.+
T Consensus       185 ~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          185 IEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             SSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             CCCccccccccceeeeeeEEEEEEE
Confidence            874          345999888876

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.37  E-value=1.1e-12  Score=134.44  Aligned_cols=127  Identities=11%  Similarity=0.072  Sum_probs=81.3

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHh-hhhhh----------hhhceeecCCCCCCccHHH---------------HHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLG-LASLM----------SKAGLYLPAKNHPRLPWFD---------------LIL  399 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~----------a~~G~~vp~~~~~~l~~~d---------------~i~  399 (623)
                      .+.+| ++++|+||||+|||||+++++ .+..-          .....|+..+.. .-.+..               .++
T Consensus        26 gl~~G-~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~~g~~~~~~~~~~~~  103 (279)
T 1nlf_A           26 NMVAG-TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHALGAHLSAEERQAVA  103 (279)
T ss_dssp             TEETT-SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CccCC-CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHHHHhhcChhhhhhcc
Confidence            46788 899999999999999999993 33210          011234444321 101111               112


Q ss_pred             HHcCCchhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCC--CCCHHHH---HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          400 ADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGS--GTDPSEG---VALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       400 ~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~--glD~~~~---~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ..+++.+..++.+..+|+|+.+.  +.+++.+|++||||||++  ++|+...   ..+...+....++.|+++|++||+.
T Consensus       104 ~~l~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~  181 (279)
T 1nlf_A          104 DGLLIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS  181 (279)
T ss_dssp             HHEEECCCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             CceEEeecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence            33333344456788999998643  345667899999999999  9998543   5666645554456689999999997


Q ss_pred             hH
Q 006974          475 DL  476 (623)
Q Consensus       475 ~l  476 (623)
                      ..
T Consensus       182 ~~  183 (279)
T 1nlf_A          182 KG  183 (279)
T ss_dssp             --
T ss_pred             Cc
Confidence            64

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.37  E-value=9.7e-15  Score=152.60  Aligned_cols=149  Identities=8%  Similarity=0.074  Sum_probs=97.7

Q ss_pred             CCcEEEceeeeecCCcccccccc-----------------------ccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh-
Q 006974          324 NSEMTVGSLSKGISDFPVPIDIK-----------------------VECETRVVVITGPNTGGKTASMKTL-GLASLMS-  378 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~~~v~i~l~-----------------------l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a-  378 (623)
                      ++.+++++|++.|+...-.+++.                       +.+| .+++|+||||||||||+|+| |++.+.. 
T Consensus        41 ~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           41 GEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP-FIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC-EEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC-EEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            35688999999995211134433                       6778 99999999999999999999 7766531 


Q ss_pred             -hhceeecCCCCCCcc----------------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          379 -KAGLYLPAKNHPRLP----------------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       379 -~~G~~vp~~~~~~l~----------------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                       ....++|++.. .++                      .+..++..++ ....+..+.+||+|++ |+..+++++.+|++
T Consensus       120 ~~~v~~v~qd~~-~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~i  197 (312)
T 3aez_A          120 HPRVDLVTTDGF-LYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDI  197 (312)
T ss_dssp             CCCEEEEEGGGG-BCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSE
T ss_pred             CCeEEEEecCcc-CCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCE
Confidence             11235565431 111                      1334455555 2333467889999999 77777889999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH--Hhhccccc
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL--SCLKDKDT  484 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l--~~~~~~~~  484 (623)
                      ||+|||+...|+.. .        .+.+.--.+|+++|+.++  ..+..+..
T Consensus       198 lIlDep~~~~d~~~-~--------~l~~~~D~~I~V~a~~~~~~~R~i~R~~  240 (312)
T 3aez_A          198 LILEGLNVLQTGPT-L--------MVSDLFDFSLYVDARIEDIEQWYVSRFL  240 (312)
T ss_dssp             EEEECTTTTCCCSS-C--------CGGGGCSEEEEEEECHHHHHHHHHHHHH
T ss_pred             EEECCccccCCcch-H--------HHHHhcCcEEEEECCHHHHHHHHHHHHH
Confidence            99999999998621 0        122222355777777653  33444443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.37  E-value=3.2e-13  Score=140.41  Aligned_cols=121  Identities=13%  Similarity=0.090  Sum_probs=83.1

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------h-hceeecCCCCCCcc--
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------K-AGLYLPAKNHPRLP--  393 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------~-~G~~vp~~~~~~l~--  393 (623)
                      +++|.+.+| ++++|+|||||||||+++.+ |++.+..                        + ...++|+......+  
T Consensus        92 ~l~~~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~  170 (302)
T 3b9q_A           92 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  170 (302)
T ss_dssp             SCCCCSSSC-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred             ccccccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence            678888899 99999999999999999999 6654210                        0 12356665420222  


Q ss_pred             -HHHHHHH------------HcCCchhhhcccccccHHHHHHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974          394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       394 -~~d~i~~------------~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~  458 (623)
                       .++.+..            .+|..+..++.+++||  .+++.++++++.+|.  +++|| ||+|+|+....       .
T Consensus       171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-------~  240 (302)
T 3b9q_A          171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R  240 (302)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred             HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH-------H
Confidence             2343321            1233334455667777  447888888999999  99999 99999997542       2


Q ss_pred             HHh-cCCcEEEEEcCc
Q 006974          459 YLR-DRVGLAVVTTHY  473 (623)
Q Consensus       459 ~l~-~~~~~vii~TH~  473 (623)
                      .+. ..+.++|++||.
T Consensus       241 ~~~~~~g~t~iiiThl  256 (302)
T 3b9q_A          241 EFNEVVGITGLILTKL  256 (302)
T ss_dssp             HHHHHTCCCEEEEECC
T ss_pred             HHHHhcCCCEEEEeCC
Confidence            233 458899999994

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.35  E-value=8.4e-14  Score=141.90  Aligned_cols=120  Identities=12%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCc------cHHHHHHHHcCCchhhhccccc
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRL------PWFDLILADIGDHQSLEQNLST  414 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l------~~~d~i~~~ig~~~~~~~~~st  414 (623)
                      +++  +.+| ++++|+|||||||||+|+++ |++.+. ..|..........+      .++.+  ..+|.      ...+
T Consensus        19 ~i~--i~~g-~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~~~~~~~~v~q--~~~gl------~~~~   86 (261)
T 2eyu_A           19 ELC--HRKM-GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVFKHKKSIVNQ--REVGE------DTKS   86 (261)
T ss_dssp             HGG--GCSS-EEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSCCCCSSSEEEE--EEBTT------TBSC
T ss_pred             HHh--hCCC-CEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceeecCCcceeeeH--HHhCC------CHHH
Confidence            565  7889 89999999999999999999 655432 02321111100000      00000  00111      1123


Q ss_pred             ccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974          415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       415 fS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      |     ++.++.+++.+|+++|+|||+   |+.....+.    +.. ..|.+++++||+.+....+++...+
T Consensus        87 l-----~~~la~aL~~~p~illlDEp~---D~~~~~~~l----~~~-~~g~~vl~t~H~~~~~~~~dri~~l  145 (261)
T 2eyu_A           87 F-----ADALRAALREDPDVIFVGEMR---DLETVETAL----RAA-ETGHLVFGTLHTNTAIDTIHRIVDI  145 (261)
T ss_dssp             H-----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECCSSHHHHHHHHHHT
T ss_pred             H-----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH----HHH-ccCCEEEEEeCcchHHHHHHHHhhh
Confidence            3     677777788899999999999   887754433    322 4588999999998877777766544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.35  E-value=2.2e-13  Score=148.60  Aligned_cols=156  Identities=10%  Similarity=0.098  Sum_probs=110.5

Q ss_pred             cEEEceeeeecC-Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------------
Q 006974          326 EMTVGSLSKGIS-DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------------  376 (623)
Q Consensus       326 ~l~~~~l~~~y~-~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------------  376 (623)
                      .++++++++.|+ +..+  ++ |.+.+| ++++|+||||+||||||++| |+..+                         
T Consensus       131 ~l~~~~v~~~~~tg~~vld~v-l~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~  208 (438)
T 2dpy_A          131 PLQRTPIEHVLDTGVRAINAL-LTVGRG-QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP  208 (438)
T ss_dssp             TTTSCCCCSBCCCSCHHHHHH-SCCBTT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred             ceEEeccceecCCCceEEeee-EEecCC-CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence            466788999997 4444  78 999999 99999999999999999999 55421                         


Q ss_pred             --hhhhceeecCCCCCCcc---HHHHH------HHHcCCc-hhhhcccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCC
Q 006974          377 --MSKAGLYLPAKNHPRLP---WFDLI------LADIGDH-QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGT  444 (623)
Q Consensus       377 --~a~~G~~vp~~~~~~l~---~~d~i------~~~ig~~-~~~~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~gl  444 (623)
                        +.+...++++.....+.   ..+.+      +...+.. ..+-..++.||+|++|++++   +.+|++      |+|+
T Consensus       209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~gl  279 (438)
T 2dpy_A          209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGY  279 (438)
T ss_dssp             HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSC
T ss_pred             cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccC
Confidence              11122467764322111   11221      1111110 01123478899999888887   777777      9999


Q ss_pred             CHHHHHHHHHHHHHHHhc---C-Cc-----EEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          445 DPSEGVALATSILQYLRD---R-VG-----LAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       445 D~~~~~~l~~all~~l~~---~-~~-----~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||.....+.. +++.+.+   . |.     |++++|||++ ..+|++...+.+|++..+
T Consensus       280 D~~~~~~l~~-ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~  336 (438)
T 2dpy_A          280 PPSVFAKLPA-LVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS  336 (438)
T ss_dssp             CTTHHHHHHH-HHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred             CHHHHHHHHH-HHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence            9999999998 6666655   3 53     8999999998 778999999999998876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.33  E-value=5.2e-13  Score=127.46  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             ccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCC--CccHHHHHHHHcCCchhhhcccccccHHHH
Q 006974          343 IDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHP--RLPWFDLILADIGDHQSLEQNLSTFSGHIS  420 (623)
Q Consensus       343 i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~--~l~~~d~i~~~ig~~~~~~~~~stfS~g~~  420 (623)
                      -++.+.+| +.++|+||||+|||||++++        .+.+.|..+..  .++ ...++..+.  ..       ++.+..
T Consensus        31 ~~~~~~~g-~~~~l~G~~G~GKTtL~~~i--------~~~~~~~~g~~~~~~~-~~~~~~~~~--~~-------~~~~~~   91 (180)
T 3ec2_A           31 HNFNPEEG-KGLTFVGSPGVGKTHLAVAT--------LKAIYEKKGIRGYFFD-TKDLIFRLK--HL-------MDEGKD   91 (180)
T ss_dssp             HSCCGGGC-CEEEECCSSSSSHHHHHHHH--------HHHHHHHSCCCCCEEE-HHHHHHHHH--HH-------HHHTCC
T ss_pred             HhccccCC-CEEEEECCCCCCHHHHHHHH--------HHHHHHHcCCeEEEEE-HHHHHHHHH--HH-------hcCchH
Confidence            35667778 89999999999999999999        33333333311  112 222222211  00       110000


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          421 RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      .  .++....+|++|+||||+. ++|+.....+.. +++...+.+.++|+|||+.
T Consensus        92 ~--~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~-ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           92 T--KFLKTVLNSPVLVLDDLGSERLSDWQRELISY-IITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             S--HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH-HHHHHHHTTCEEEEECCCC
T ss_pred             H--HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH-HHHHHHHcCCCEEEEcCCC
Confidence            0  1222345899999999995 999999888877 7777777788999999985

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.31  E-value=1.9e-12  Score=137.46  Aligned_cols=121  Identities=13%  Similarity=0.090  Sum_probs=83.7

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------h-hceeecCCCCCCcc--
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------K-AGLYLPAKNHPRLP--  393 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------~-~G~~vp~~~~~~l~--  393 (623)
                      +++|++.+| ++++|+|||||||||+++.+ |++....                        + ...++|+......+  
T Consensus       149 ~l~l~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          149 ELQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             SCCCCSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CcceecCCC-eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            678888899 99999999999999999999 6654210                        0 12356665320222  


Q ss_pred             -HHHHHHH------------HcCCchhhhcccccccHHHHHHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHH
Q 006974          394 -WFDLILA------------DIGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       394 -~~d~i~~------------~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~  458 (623)
                       .++.+..            .+|..+..++.+++||  .+++.++++++.+|.  +++|| ||+|+|+....       .
T Consensus       228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-------~  297 (359)
T 2og2_A          228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R  297 (359)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred             hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-------H
Confidence             2344321            1233334455667777  457888899999999  99999 99999997642       2


Q ss_pred             HHh-cCCcEEEEEcCc
Q 006974          459 YLR-DRVGLAVVTTHY  473 (623)
Q Consensus       459 ~l~-~~~~~vii~TH~  473 (623)
                      .+. ..+.++|++||.
T Consensus       298 ~~~~~~g~t~iiiThl  313 (359)
T 2og2_A          298 EFNEVVGITGLILTKL  313 (359)
T ss_dssp             HHHHHTCCCEEEEESC
T ss_pred             HHHHhcCCeEEEEecC
Confidence            233 358899999995

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.29  E-value=2.2e-11  Score=119.03  Aligned_cols=140  Identities=19%  Similarity=0.109  Sum_probs=85.7

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCch-h-hh-cccccccHHH--H
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-S-LE-QNLSTFSGHI--S  420 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~-~~-~~~stfS~g~--~  420 (623)
                      .+.+| ++++|+||||+|||||+++++.  .......|+..........+.++...++... . .+ -.+...++++  +
T Consensus        16 gi~~G-~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (220)
T 2cvh_A           16 GFAPG-VLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQR   92 (220)
T ss_dssp             SBCTT-SEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred             CCcCC-EEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence            46788 8999999999999999999944  2222234555443112222334444444421 1 11 1233333332  2


Q ss_pred             -HHHHHHHhcCC-CcEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhcCCcEEEEEcCchh--------------H
Q 006974          421 -RIVDILELVSR-ESLVLIDEIGSGTDPSE--------GVALATSILQYLRDRVGLAVVTTHYAD--------------L  476 (623)
Q Consensus       421 -rl~~~~~l~~~-~~LlLLDEp~~glD~~~--------~~~l~~all~~l~~~~~~vii~TH~~~--------------l  476 (623)
                       .+..+.+++.+ |++||+|||++++|+..        -..+...+.+...+.++++|+++|...              +
T Consensus        93 ~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~  172 (220)
T 2cvh_A           93 RVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTL  172 (220)
T ss_dssp             HHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHH
T ss_pred             HHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcce
Confidence             46666667765 99999999999999743        233444344444455889999999853              4


Q ss_pred             HhhccccceeeC
Q 006974          477 SCLKDKDTRFEN  488 (623)
Q Consensus       477 ~~~~~~~~~i~~  488 (623)
                      ..+||.++.+..
T Consensus       173 ~~~~d~vi~l~~  184 (220)
T 2cvh_A          173 GYRCKDILRLDK  184 (220)
T ss_dssp             HHTSSEEEEEEE
T ss_pred             eecCcEEEEEEE
Confidence            457777766643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.21  E-value=2.1e-11  Score=143.15  Aligned_cols=97  Identities=25%  Similarity=0.284  Sum_probs=84.3

Q ss_pred             HHHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974          397 LILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       397 ~i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH  472 (623)
                      ..+..+|+.. .+++.+++|||||+ |+.+|++++.+|+  ++||||||+||||.+...|.. ++..+++.|.|+|++||
T Consensus       446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~TvivVtH  524 (916)
T 3pih_A          446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIVVEH  524 (916)
T ss_dssp             HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCEEEEECC
T ss_pred             HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence            3566788875 47899999999999 8999999998776  999999999999999999999 67778888999999999


Q ss_pred             chhHHhhcccccee------eCceEEEe
Q 006974          473 YADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       473 ~~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      |+++...||+++.+      .+|.+.+.
T Consensus       525 d~~~~~~aD~ii~lgpgag~~~G~iv~~  552 (916)
T 3pih_A          525 DEEVIRNADHIIDIGPGGGTNGGRVVFQ  552 (916)
T ss_dssp             CHHHHHTCSEEEEEESSSGGGCSEEEEE
T ss_pred             CHHHHHhCCEEEEEcCCcccCCCEEEEe
Confidence            99977779999999      67777654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.21  E-value=1.4e-12  Score=133.38  Aligned_cols=114  Identities=18%  Similarity=0.072  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH-hhhhhhh----------------hhceeecCCCCC--CccHHH--------------HHH
Q 006974          353 VVVITGPNTGGKTASMKTL-GLASLMS----------------KAGLYLPAKNHP--RLPWFD--------------LIL  399 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i-gl~~~~a----------------~~G~~vp~~~~~--~l~~~d--------------~i~  399 (623)
                      .++|+||||||||||||++ |+..+..                +.-.++|+....  .++++|              ..+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i   83 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI   83 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence            5799999999999999999 6664321                111345554211  111111              112


Q ss_pred             HHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          400 ADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       400 ~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ..+...+..+....+||+|++ |+.++++++.   +++||||+.|+|+.+..     +++.+.+. .++|++.|-.+
T Consensus        84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-----~l~~L~~~-~~vI~Vi~K~D  151 (270)
T 3sop_A           84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-----FMKHLSKV-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-----HHHHHHTT-SEEEEEETTGG
T ss_pred             HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-----HHHHHHhc-CcEEEEEeccc
Confidence            222224455667889999998 6777776553   99999999999999833     44556665 77777777654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.19  E-value=3.4e-11  Score=140.83  Aligned_cols=96  Identities=23%  Similarity=0.243  Sum_probs=84.1

Q ss_pred             HHHHcCCch-hhhcccccccHHHH-HHHHHHHhcCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          398 ILADIGDHQ-SLEQNLSTFSGHIS-RIVDILELVSR--ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       398 i~~~ig~~~-~~~~~~stfS~g~~-rl~~~~~l~~~--~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      .+..+|+.. .+++.+++|||||+ |+.+|.+++.+  |.++||||||+||||.+...|.. +++.|++.|.|||++||+
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~Lr~~G~TVIvVeHd  565 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHD  565 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCC
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence            367788875 47999999999999 79999999887  48999999999999999999999 777788889999999999


Q ss_pred             hhHHhhcccccee------eCceEEEe
Q 006974          474 ADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       474 ~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      .++...||+++.+      .+|.+.+.
T Consensus       566 l~~i~~ADrIi~LgpgaG~~gG~iv~~  592 (972)
T 2r6f_A          566 EDTMLAADYLIDIGPGAGIHGGEVVAA  592 (972)
T ss_dssp             HHHHHSCSEEEEECSSSGGGCCSEEEE
T ss_pred             HHHHHhCCEEEEeCCCccCCCCEEEEe
Confidence            9876789999998      57777664

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.17  E-value=5.6e-11  Score=138.41  Aligned_cols=96  Identities=22%  Similarity=0.212  Sum_probs=84.6

Q ss_pred             HHHHcCCchh-hhcccccccHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          398 ILADIGDHQS-LEQNLSTFSGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       398 i~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      .+..+|+... +++.+++||||++ |+++|.+++.+|  .++||||||+||||.+...|.. +++.|++.|.|||++||+
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L~~~G~TVIvVeHd  440 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGNSLFVVEHD  440 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHTTTCEEEEECCC
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHHHHcCCEEEEEcCC
Confidence            4667888754 7999999999999 799999999998  5999999999999999999999 777889889999999999


Q ss_pred             hhHHhhcccccee------eCceEEEe
Q 006974          474 ADLSCLKDKDTRF------ENAATEFS  494 (623)
Q Consensus       474 ~~l~~~~~~~~~i------~~g~~~~~  494 (623)
                      +++...||+++.+      .+|.+.+.
T Consensus       441 l~~l~~aD~ii~lgpgaG~~~G~iv~~  467 (842)
T 2vf7_A          441 LDVIRRADWLVDVGPEAGEKGGEILYS  467 (842)
T ss_dssp             HHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred             HHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence            9977789999988      56777664

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.17  E-value=4.2e-13  Score=132.85  Aligned_cols=127  Identities=13%  Similarity=-0.012  Sum_probs=74.7

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh--c----------------eeecCCCCCCccHHHHHHH--
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA--G----------------LYLPAKNHPRLPWFDLILA--  400 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~--G----------------~~vp~~~~~~l~~~d~i~~--  400 (623)
                      ++||++.+| ++++|+||||||||||+|++ |+. + ...  |                .|+|+..    ..|.....  
T Consensus        15 ~isl~i~~G-~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~g~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~   87 (218)
T 1z6g_A           15 VPRGSMNNI-YPLVICGPSGVGKGTLIKKLLNEF-P-NYFYFSVSCTTRKKREKEKEGVDYYFIDK----TIFEDKLKNE   87 (218)
T ss_dssp             -------CC-CCEEEECSTTSSHHHHHHHHHHHS-T-TTEEECCCEECSCCCSSCCBTTTBEECCH----HHHHHHHHTT
T ss_pred             CCceecCCC-CEEEEECCCCCCHHHHHHHHHhhC-C-CcEEEeecccCCCCCcccccCCeEEECCH----HHHHHhhhcc
Confidence            889999999 99999999999999999999 655 2 110  0                1122211    01211100  


Q ss_pred             -----------HcCCc-hh----hh-----cccccccHHHH-HHHH-----HHHhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 006974          401 -----------DIGDH-QS----LE-----QNLSTFSGHIS-RIVD-----ILELVSRESLVLIDEIGSGTDPSEGVALA  453 (623)
Q Consensus       401 -----------~ig~~-~~----~~-----~~~stfS~g~~-rl~~-----~~~l~~~~~LlLLDEp~~glD~~~~~~l~  453 (623)
                                 ..|.. ..    +.     -....+|||++ |+++     ++.++.+|++++||||++++|......+.
T Consensus        88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~  167 (218)
T 1z6g_A           88 DFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ  167 (218)
T ss_dssp             CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred             chhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence                       00000 00    00     01146799999 6666     45678899999999999999988777777


Q ss_pred             HHHHHHHhc------CCcEEEEEcCchh
Q 006974          454 TSILQYLRD------RVGLAVVTTHYAD  475 (623)
Q Consensus       454 ~all~~l~~------~~~~vii~TH~~~  475 (623)
                      ..+.....+      ..+..|+++|+.+
T Consensus       168 ~~l~~~~~~~~~~h~~~~d~iiv~~~~~  195 (218)
T 1z6g_A          168 KRMEQLNIELHEANLLNFNLSIINDDLT  195 (218)
T ss_dssp             HHHHHHHHHHHHHTTSCCSEEEECSSHH
T ss_pred             HHHHHHHHHHHhhcccCCCEEEECCCHH
Confidence            655443222      4567788999865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.17  E-value=1.1e-11  Score=124.58  Aligned_cols=122  Identities=15%  Similarity=0.109  Sum_probs=72.9

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----hhhceeecCCCC-CCccHHHH-----------------
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----SKAGLYLPAKNH-PRLPWFDL-----------------  397 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----a~~G~~vp~~~~-~~l~~~d~-----------------  397 (623)
                      ++||++.+| .+++|+|||||||||++|++ |++-..     ++...++|+... ..++..+.                 
T Consensus        17 ~isl~i~~g-~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~   95 (245)
T 2jeo_A           17 NLYFQSMRP-FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFD   95 (245)
T ss_dssp             ------CCS-EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBC
T ss_pred             ceeccCCCC-EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCccccc
Confidence            899999999 99999999999999999999 543210     111224555421 11222221                 


Q ss_pred             ------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 006974          398 ------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVT  470 (623)
Q Consensus       398 ------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~  470 (623)
                            .+..+  .+.....+..||+|++ |+.. ..++.+|+++|+|||....++.    +..     +  .+.+++++
T Consensus        96 ~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~~-----~--~~~~i~v~  161 (245)
T 2jeo_A           96 NDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IRD-----M--FHLRLFVD  161 (245)
T ss_dssp             HHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HHT-----T--CSEEEEEE
T ss_pred             HHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HHH-----h--cCeEEEEE
Confidence                  11111  1223456788999998 5544 4567889999999998877753    111     1  26789999


Q ss_pred             cCc-hhHHh
Q 006974          471 THY-ADLSC  478 (623)
Q Consensus       471 TH~-~~l~~  478 (623)
                      ||+ ..+..
T Consensus       162 th~~~~~~r  170 (245)
T 2jeo_A          162 TDSDVRLSR  170 (245)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            997 33443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.16  E-value=9.7e-11  Score=124.15  Aligned_cols=131  Identities=16%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             cccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh----c--eeecCCCCCCccHHHHHHHHcCCch-hhhccc---
Q 006974          344 DIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA----G--LYLPAKNHPRLPWFDLILADIGDHQ-SLEQNL---  412 (623)
Q Consensus       344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~----G--~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~---  412 (623)
                      ...+++| ++++|+||||||||||++++ +.+......    |  .|+-......-.-+..++...+... .+..++   
T Consensus       125 ~ggi~~G-~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~  203 (349)
T 1pzn_A          125 GGGIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVA  203 (349)
T ss_dssp             TSSEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred             cCCCCCC-eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence            4678899 99999999999999999999 443211112    2  4554443111112233444444321 121111   


Q ss_pred             ccc-cHHHH-HHHHHHHhc-------CCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEc
Q 006974          413 STF-SGHIS-RIVDILELV-------SRESLVLIDEIGSGTDPSE------------GVALATSILQYLRDRVGLAVVTT  471 (623)
Q Consensus       413 stf-S~g~~-rl~~~~~l~-------~~~~LlLLDEp~~glD~~~------------~~~l~~all~~l~~~~~~vii~T  471 (623)
                      ..+ |.++. .+..+..++       .+|++||+|||++++|+..            ...+...+.....+.++++|+++
T Consensus       204 ~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~  283 (349)
T 1pzn_A          204 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN  283 (349)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence            112 44555 455565555       6899999999999999852            23344434444445689999999


Q ss_pred             Cchh
Q 006974          472 HYAD  475 (623)
Q Consensus       472 H~~~  475 (623)
                      |...
T Consensus       284 h~~~  287 (349)
T 1pzn_A          284 QVQA  287 (349)
T ss_dssp             ECC-
T ss_pred             cccc
Confidence            9864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.15  E-value=1.5e-13  Score=134.34  Aligned_cols=123  Identities=15%  Similarity=0.072  Sum_probs=84.9

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCC----CCccH------------------HHHHHHHcCC
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNH----PRLPW------------------FDLILADIGD  404 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~----~~l~~------------------~d~i~~~ig~  404 (623)
                      .+| .+++|+|||||||||++|++ |++..  + ..++|++..    ..++.                  +..++..++.
T Consensus         4 ~~~-~~i~i~G~~GsGKSTl~~~l~~~~~~--~-i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (211)
T 3asz_A            4 PKP-FVIGIAGGTASGKTTLAQALARTLGE--R-VALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR   79 (211)
T ss_dssp             -CC-EEEEEEESTTSSHHHHHHHHHHHHGG--G-EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred             CCc-EEEEEECCCCCCHHHHHHHHHHHhCC--C-eEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence            467 89999999999999999999 65432  1 224444321    11111                  2334455555


Q ss_pred             chhhhcccccccHHHH-----HHHHHHHhcCCCcEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974          405 HQSLEQNLSTFSGHIS-----RIVDILELVSRESLVLIDEIGSG-------TDPSEGVALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       405 ~~~~~~~~stfS~g~~-----rl~~~~~l~~~~~LlLLDEp~~g-------lD~~~~~~l~~all~~l~~~~~~vii~TH  472 (623)
                      .+.+..+...+|+|++     ++..+..++.+|.++++|||+++       +|+.....+...+.+...++|.++++++|
T Consensus        80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~  159 (211)
T 3asz_A           80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA  159 (211)
T ss_dssp             TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            5666777888998864     23344456777888888999999       89988888888666655666888888899


Q ss_pred             ch
Q 006974          473 YA  474 (623)
Q Consensus       473 ~~  474 (623)
                      +.
T Consensus       160 ~~  161 (211)
T 3asz_A          160 QY  161 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.15  E-value=7.3e-12  Score=133.04  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=72.7

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcC-CchhhhcccccccHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQSLEQNLSTFSGHISRIV  423 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig-~~~~~~~~~stfS~g~~rl~  423 (623)
                      ...+| .+++|+|||||||||||+++ |++.... .|..+-......+..-.    ..+ ..+ .......++..   -+
T Consensus       119 ~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~----~~~~v~q-~~~~~~~~~~~---~~  188 (356)
T 3jvv_A          119 SDVPR-GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHES----KKCLVNQ-REVHRDTLGFS---EA  188 (356)
T ss_dssp             HHCSS-EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCC----SSSEEEE-EEBTTTBSCHH---HH
T ss_pred             HhCCC-CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhc----cccceee-eeeccccCCHH---HH
Confidence            55677 79999999999999999998 6655431 11111100001111000    000 000 00011112211   16


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceee
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFE  487 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~  487 (623)
                      ++.++..+|+++|+|||+   |+.....+..     +...|.++|+|||+.+....+++...+.
T Consensus       189 La~aL~~~PdvillDEp~---d~e~~~~~~~-----~~~~G~~vl~t~H~~~~~~~~dRli~l~  244 (356)
T 3jvv_A          189 LRSALREDPDIILVGEMR---DLETIRLALT-----AAETGHLVFGTLHTTSAAKTIDRVVDVF  244 (356)
T ss_dssp             HHHHTTSCCSEEEESCCC---SHHHHHHHHH-----HHHTTCEEEEEESCSSHHHHHHHHHHTS
T ss_pred             HHHHhhhCcCEEecCCCC---CHHHHHHHHH-----HHhcCCEEEEEEccChHHHHHHHHhhhc
Confidence            677789999999999998   6554333322     3445889999999988767777776553

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.12  E-value=3e-10  Score=112.65  Aligned_cols=129  Identities=15%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-------hhhceeecCCCCCCccHHHHHHHHcCCch-hhhcc---ccc
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQN---LST  414 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-------a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~---~st  414 (623)
                      -+++| ++++|+||||+|||||+++++....+       .....|+.........-+..++..+|... .+..+   ...
T Consensus        20 gi~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   98 (243)
T 1n0w_A           20 GIETG-SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA   98 (243)
T ss_dssp             SEETT-SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCcCC-eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence            36678 89999999999999999999432222       11123443332111112334555666432 11111   123


Q ss_pred             ccHHHH-H-HHHHHHh--cCCCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          415 FSGHIS-R-IVDILEL--VSRESLVLIDEIGSGTDPS-------E-----GVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       415 fS~g~~-r-l~~~~~l--~~~~~LlLLDEp~~glD~~-------~-----~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ++..+. + +..+...  ..+|++|++|||++.+|+.       .     ...+...+.....+.+++||+++|...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~  175 (243)
T 1n0w_A           99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA  175 (243)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred             CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence            444443 2 2223332  3689999999999999985       2     233444455544556899999999754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.11  E-value=3.2e-12  Score=123.89  Aligned_cols=129  Identities=14%  Similarity=0.041  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH-hhhhhhhhhc------------------eeecCCCCCCccHHHHHHHHcCC--c-----
Q 006974          352 RVVVITGPNTGGKTASMKTL-GLASLMSKAG------------------LYLPAKNHPRLPWFDLILADIGD--H-----  405 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G------------------~~vp~~~~~~l~~~d~i~~~ig~--~-----  405 (623)
                      ++++|+||||+|||||++++ |++. .  .|                  .++++.......    .+.+++.  .     
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~-~--~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~----~l~~~~~~~~~~~~~   74 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK-S--SGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRG----PLSRVGLEPPPGKRE   74 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH-H--TTCCCEEEECCEEETTSSEEEEEEEETTSCEE----EEEECCCCCCSSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc-c--CCEEEcCEecchhHhhhceEEEEEEeccccee----hhhcccccCCccccc
Confidence            68999999999999999999 5553 1  12                  122221100000    0011111  0     


Q ss_pred             hhhhcccccccHHHH-HHHHHH----HhcCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEE---EEcCchh
Q 006974          406 QSLEQNLSTFSGHIS-RIVDIL----ELVSRESLVLIDE--IGSGTDPSEGVALATSILQYLRDRVGLAV---VTTHYAD  475 (623)
Q Consensus       406 ~~~~~~~stfS~g~~-rl~~~~----~l~~~~~LlLLDE--p~~glD~~~~~~l~~all~~l~~~~~~vi---i~TH~~~  475 (623)
                      ..+.+....+|++++ .+..+.    +.+.+|+++||||  |+..+|+....+|..    .+.....++|   .+||+..
T Consensus        75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~----~l~~~~~~ilgti~vsh~~~  150 (189)
T 2i3b_A           75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ----TLSTPGTIILGTIPVPKGKP  150 (189)
T ss_dssp             EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH----HHHCSSCCEEEECCCCCSSC
T ss_pred             cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH----HHhCCCcEEEEEeecCCCCc
Confidence            123344556888887 443332    2578999999999  787888875544444    3333333332   3348864


Q ss_pred             HHhhccccceeeCceEE
Q 006974          476 LSCLKDKDTRFENAATE  492 (623)
Q Consensus       476 l~~~~~~~~~i~~g~~~  492 (623)
                       ..+++++....++.+.
T Consensus       151 -~~~vd~i~~~~~~~i~  166 (189)
T 2i3b_A          151 -LALVEEIRNRKDVKVF  166 (189)
T ss_dssp             -CTTHHHHHTTCCSEEE
T ss_pred             -hHHHHHHeecCCcEEE
Confidence             2344544445566554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.09  E-value=1.9e-10  Score=107.04  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=60.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      +| +.++|+||||+|||||++++ +.+........|++.......                                  .
T Consensus        35 ~g-~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------------------------------~   79 (149)
T 2kjq_A           35 HG-QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------------------------------D   79 (149)
T ss_dssp             CC-SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------------------------------G
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------------------------------H
Confidence            67 89999999999999999999 333321111234443321100                                  2


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEcCc
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL-AVVTTHY  473 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~-vii~TH~  473 (623)
                      ++.++++|+||||+. +++.....+.. +++.+.+.+.+ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~-li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFS-IFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHH-HHHHHHHHTCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHH-HHHHHHHcCCcEEEEECCC
Confidence            345799999999998 55555666766 77777777777 8889986

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.01  E-value=5.5e-10  Score=124.41  Aligned_cols=79  Identities=25%  Similarity=0.314  Sum_probs=69.8

Q ss_pred             hcccccc-cHHHH-HHHHHHHhcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccc
Q 006974          409 EQNLSTF-SGHIS-RIVDILELVSRE--SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDT  484 (623)
Q Consensus       409 ~~~~stf-S~g~~-rl~~~~~l~~~~--~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~  484 (623)
                      .++++.| |||++ |++++++++.+|  +++||||||+|+|+.....+.. ++..+.+ +.+||++||++++..+||+++
T Consensus       391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~-~~~vi~itH~~~~~~~~d~~~  468 (517)
T 4ad8_A          391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD-TRQVLVVTHLAQIAARAHHHY  468 (517)
T ss_dssp             CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH-HSEEEEECCCHHHHHHSSEEE
T ss_pred             cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHHhCCEEE
Confidence            3678888 99999 899999999999  9999999999999999999999 5555666 789999999999888899998


Q ss_pred             eeeCc
Q 006974          485 RFENA  489 (623)
Q Consensus       485 ~i~~g  489 (623)
                      .+.++
T Consensus       469 ~~~~~  473 (517)
T 4ad8_A          469 KVEKQ  473 (517)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            88654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.01  E-value=3.1e-11  Score=125.34  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=60.2

Q ss_pred             ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hh-hhhhh---------------hhceeecCCCCC
Q 006974          330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GL-ASLMS---------------KAGLYLPAKNHP  390 (623)
Q Consensus       330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl-~~~~a---------------~~G~~vp~~~~~  390 (623)
                      .||++.|+++.+  +++|.+       +|+||||+|||||++++ |. +.+..               ..-.++++....
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I-------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~   74 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL-------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV   74 (301)
T ss_dssp             ----------------CEEE-------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---C
T ss_pred             CCCcceECCEEEEcCCCEEE-------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence            478889987766  666654       89999999999999997 54 22110               001122222110


Q ss_pred             --CccHHHH---------------HHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCC-CCHHHHHH
Q 006974          391 --RLPWFDL---------------ILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSG-TDPSEGVA  451 (623)
Q Consensus       391 --~l~~~d~---------------i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~g-lD~~~~~~  451 (623)
                        .+.++|.               +...  +.+..+..+..+|+|++ ++..++++    -+|++|||+++ +|+.+.  
T Consensus        75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~----~ll~ldePt~~~Ld~~~~--  146 (301)
T 2qnr_A           75 KLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVH----CCFYFISPFGHGLKPLDV--  146 (301)
T ss_dssp             CEEEEEEEEC-----------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCC----EEEEEECSSSSSCCHHHH--
T ss_pred             ccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhh----heeeeecCcccCCCHHHH--
Confidence              0111110               0000  01112255666677666 32222222    29999999884 999873  


Q ss_pred             HHHHHHHHHhcC-CcEEEEEcCchh
Q 006974          452 LATSILQYLRDR-VGLAVVTTHYAD  475 (623)
Q Consensus       452 l~~all~~l~~~-~~~vii~TH~~~  475 (623)
                        . ++..+... +.++|+++||+.
T Consensus       147 --~-~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          147 --A-FMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             --H-HHHHHTTTSCEEEEECCGGGS
T ss_pred             --H-HHHHHHhcCCEEEEEEeCCCC
Confidence              2 44455543 678899999963

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.99  E-value=2.7e-10  Score=110.47  Aligned_cols=133  Identities=15%  Similarity=0.035  Sum_probs=78.3

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhh-----hhhhh----h-------ceeecC-CC
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLA-----SLMSK----A-------GLYLPA-KN  388 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~-----~~~a~----~-------G~~vp~-~~  388 (623)
                      ++++|+++.|+. .+-.+|.+.+| ..++|+|+||+|||||++.+ |..     .....    .       +..+-. .|
T Consensus         4 l~~~~~~~~~~~-~~l~~~~~~~~-~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G   81 (210)
T 1pui_A            4 LNYQQTHFVMSA-PDIRHLPSDTG-IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG   81 (210)
T ss_dssp             -------CEEEE-SSGGGSSCSCS-EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCC
T ss_pred             hhhhhhhheeec-CCHhHCCCCCC-cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcC
Confidence            678999999974 34233888999 89999999999999999998 443     11000    0       000000 00


Q ss_pred             CC-------------------------------------CccHHH----HHHHHcCCchh-hhcccccccHHHH-H-HHH
Q 006974          389 HP-------------------------------------RLPWFD----LILADIGDHQS-LEQNLSTFSGHIS-R-IVD  424 (623)
Q Consensus       389 ~~-------------------------------------~l~~~d----~i~~~ig~~~~-~~~~~stfS~g~~-r-l~~  424 (623)
                      ..                                     .....+    .++...+.... +..+...+|+|++ + +..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~  161 (210)
T 1pui_A           82 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNM  161 (210)
T ss_dssp             CC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHH
Confidence            00                                     000000    11122232221 2455677899987 4 567


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR  461 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~  461 (623)
                      +.+++.++.++++|||++++|+.....+...+.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          162 VREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             HHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            7778888888899999999999999999986665543

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.97  E-value=1.4e-09  Score=103.86  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=63.2

Q ss_pred             hcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974          409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD  483 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~  483 (623)
                      .+.++.||||++ +++++++++    .+|+++|||||++|||+.....+.. ++..+.+ +.++|++||+..+..+|+++
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~~ivith~~~~~~~ad~i  136 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQFIVITLRDVMMANADKI  136 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence            467789999999 788888875    5679999999999999999999999 5555554 46889999998887889988


Q ss_pred             cee
Q 006974          484 TRF  486 (623)
Q Consensus       484 ~~i  486 (623)
                      +.+
T Consensus       137 ~~v  139 (173)
T 3kta_B          137 IGV  139 (173)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.96  E-value=1.1e-10  Score=132.54  Aligned_cols=48  Identities=23%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             cCCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhH
Q 006974          429 VSRESLVLIDEI------GSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADL  476 (623)
Q Consensus       429 ~~~~~LlLLDEp------~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l  476 (623)
                      ...|+|+|+|||      |+|+|+.....+...+.+++.+. +.+++++||+.++
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~  198 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI  198 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence            356899999999      99999999999988666655544 5577899999763

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.93  E-value=2e-10  Score=124.37  Aligned_cols=134  Identities=13%  Similarity=0.094  Sum_probs=68.0

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhh---------------ceeecC
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKA---------------GLYLPA  386 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~---------------G~~vp~  386 (623)
                      +.+.++||+++|++..+  +++|.+       +|+||||+|||||++++ |+..+....               ..++++
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~vsf~I-------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q   82 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRGFEFTL-------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK   82 (418)
T ss_dssp             -----CCCCCCTTTTTCC-CCCEEE-------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred             CcEEEEecceeECCEEEecCCCEEE-------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence            35788999999987666  777654       89999999999999999 333210000               011111


Q ss_pred             CCCC--CccHHHHHHHHcCCchhhh-----cc-----cccccHHHH-HHHHHHHhcCCCc---EEEEeCCC-CCCCHHHH
Q 006974          387 KNHP--RLPWFDLILADIGDHQSLE-----QN-----LSTFSGHIS-RIVDILELVSRES---LVLIDEIG-SGTDPSEG  449 (623)
Q Consensus       387 ~~~~--~l~~~d~i~~~ig~~~~~~-----~~-----~stfS~g~~-rl~~~~~l~~~~~---LlLLDEp~-~glD~~~~  449 (623)
                      ....  .+.++|.    +|.....+     ..     -..|+.+++ ++.++++++.+|.   +|++|||| .|+|+.+.
T Consensus        83 ~~~~~~~Ltv~Dt----~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~  158 (418)
T 2qag_C           83 EGGVQLLLTIVDT----PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI  158 (418)
T ss_dssp             ----CEEEEEEEC----C-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred             cCCcccceeeeec----hhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence            1100  0111110    01110000     00     012233333 3445566778899   99999999 69999884


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          450 VALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       450 ~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .     +++.+.. +..+|++.|-.+
T Consensus       159 ~-----~lk~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          159 E-----FMKRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             H-----HHHHHTT-TSEEEEEEESTT
T ss_pred             H-----HHHHHhc-cCcEEEEEEccc
Confidence            2     3445554 566666655544

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.93  E-value=1.8e-09  Score=115.33  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=71.0

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcC-Cch-hhhcccccccHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIG-DHQ-SLEQNLSTFSGHISRI  422 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig-~~~-~~~~~~stfS~g~~rl  422 (623)
                      .+.+| .+++|+|||||||||+|+++ |++... ..|..+-......+.+ .   ..++ ..+ .+.....+|+     .
T Consensus       132 ~~~~g-~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~~-~---~~~~~v~Q~~~g~~~~~~~-----~  200 (372)
T 2ewv_A          132 CHRKM-GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYVF-K---HKKSIVNQREVGEDTKSFA-----D  200 (372)
T ss_dssp             TTSSS-EEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSCC-C---CSSSEEEEEEBTTTBSCSH-----H
T ss_pred             hhcCC-CEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhhh-c---cCceEEEeeecCCCHHHHH-----H
Confidence            36788 89999999999999999999 555432 0222211111111100 0   0000 000 0111334564     3


Q ss_pred             HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974          423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR  485 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~  485 (623)
                      .++.++..+|+++++|||+   |+.....    +++. ...|.++++|+|+.+....+++...
T Consensus       201 ~l~~~L~~~pd~illdE~~---d~e~~~~----~l~~-~~~g~~vi~t~H~~~~~~~~~rl~~  255 (372)
T 2ewv_A          201 ALRAALREDPDVIFVGEMR---DLETVET----ALRA-AETGHLVFGTLHTNTAIDTIHRIVD  255 (372)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHH----HHHH-HTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred             HHHHHhhhCcCEEEECCCC---CHHHHHH----HHHH-HhcCCEEEEEECcchHHHHHHHHHH
Confidence            4555677899999999999   7655332    2332 2457899999999777666666543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.90  E-value=1.5e-10  Score=123.32  Aligned_cols=143  Identities=9%  Similarity=-0.030  Sum_probs=79.4

Q ss_pred             cccccccC--CceEEEEEcCCCCCHHHHHHHH-hhhhhhh--hhce-eec----CCCC-CCccHHHHHHH----------
Q 006974          342 PIDIKVEC--ETRVVVITGPNTGGKTASMKTL-GLASLMS--KAGL-YLP----AKNH-PRLPWFDLILA----------  400 (623)
Q Consensus       342 ~i~l~l~~--g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a--~~G~-~vp----~~~~-~~l~~~d~i~~----------  400 (623)
                      .+++.+.+  | +.++|+||||||||||+|+| |++.+..  ..|. +++    .... ....-+.++..          
T Consensus       160 ~v~~~v~~~lg-~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~  238 (365)
T 1lw7_A          160 FIPKEARPFFA-KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAV  238 (365)
T ss_dssp             GSCTTTGGGTC-EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHhhh-CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHH
Confidence            57778888  8 89999999999999999999 6654332  0011 111    0000 00000111110          


Q ss_pred             Hc------CCchhhhcccccccHHHH-HHHHHHH-hcCCCcEEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcC
Q 006974          401 DI------GDHQSLEQNLSTFSGHIS-RIVDILE-LVSRESLVLIDE---IG------SGTDPSEGVALATSILQYLRDR  463 (623)
Q Consensus       401 ~i------g~~~~~~~~~stfS~g~~-rl~~~~~-l~~~~~LlLLDE---p~------~glD~~~~~~l~~all~~l~~~  463 (623)
                      .+      +..+.....+...|++.+ +..++.. ...+|+++||||   |+      .++|+..+..++.++.+.+.+.
T Consensus       239 t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~  318 (365)
T 1lw7_A          239 RHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKY  318 (365)
T ss_dssp             HHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGG
T ss_pred             hccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHc
Confidence            00      011111222223344444 3222222 346899999999   65      5889999999999776666666


Q ss_pred             CcEEEEEcCchhHHhhccccce
Q 006974          464 VGLAVVTTHYADLSCLKDKDTR  485 (623)
Q Consensus       464 ~~~vii~TH~~~l~~~~~~~~~  485 (623)
                      +.++|++||......+++....
T Consensus       319 ~~~ililde~~~~~r~~~~i~~  340 (365)
T 1lw7_A          319 KVPYIEIESPSYLDRYNQVKAV  340 (365)
T ss_dssp             GCCCEEEECSSHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCHHHHHHHHHHH
Confidence            7889999987555555554433

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.81  E-value=1.5e-08  Score=109.20  Aligned_cols=127  Identities=17%  Similarity=0.134  Sum_probs=72.1

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCch-hhhcc---ccc
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQN---LST  414 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~---~st  414 (623)
                      -+.+| ++++|+||||+|||||++++++.....       ....|+-......-..+..+..++|... .+..+   ...
T Consensus       174 GI~~G-ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~  252 (400)
T 3lda_A          174 GVETG-SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA  252 (400)
T ss_dssp             SEETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CcCCC-cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence            35678 899999999999999999774332221       1123444332111112344566677532 11111   122


Q ss_pred             ccHHH-H-HHHHHHH--hcCCCcEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          415 FSGHI-S-RIVDILE--LVSRESLVLIDEIGSGTDPSEG------------VALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       415 fS~g~-~-rl~~~~~--l~~~~~LlLLDEp~~glD~~~~------------~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      ++... . .+..+..  ...+|++|++|||++.+++...            ..+...+.+..++.+++||++||.
T Consensus       253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv  327 (400)
T 3lda_A          253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV  327 (400)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence            33322 2 2322322  2358999999999999986432            344553444444568999999998

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.78  E-value=3.8e-09  Score=114.22  Aligned_cols=143  Identities=15%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             EEEceeeeecCCccc-cccccccCCceE--EEEEcCCCCCHHHHHHHH-hhhh---hhh--------hhceeecCCCCC-
Q 006974          327 MTVGSLSKGISDFPV-PIDIKVECETRV--VVITGPNTGGKTASMKTL-GLAS---LMS--------KAGLYLPAKNHP-  390 (623)
Q Consensus       327 l~~~~l~~~y~~~~v-~i~l~l~~g~~~--~~I~GpNgsGKSTlLk~i-gl~~---~~a--------~~G~~vp~~~~~-  390 (623)
                      +++.+ +++|++.++ +++|++.+| .+  ++|+||||+||||||++| |+..   ...        ....++|+.... 
T Consensus        17 l~~~~-~~~y~~~~L~~vsl~i~~G-ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~   94 (427)
T 2qag_B           17 VPLAG-HVGFDSLPDQLVNKSVSQG-FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR   94 (427)
T ss_dssp             CCCCC-CC-CC--CHHHHHHSCC-C-CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred             EEEee-EEEECCeecCCCceEecCC-CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence            44555 778876546 899999999 89  999999999999999999 6531   000        112345554210 


Q ss_pred             ---------Ccc------------------HHHHHHHHc-CCchh----hhcc----c-------ccccHHHHHHHHHHH
Q 006974          391 ---------RLP------------------WFDLILADI-GDHQS----LEQN----L-------STFSGHISRIVDILE  427 (623)
Q Consensus       391 ---------~l~------------------~~d~i~~~i-g~~~~----~~~~----~-------stfS~g~~rl~~~~~  427 (623)
                               .++                  -++.++... +....    .+..    +       ..++..  .+.++..
T Consensus        95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~--Dieilk~  172 (427)
T 2qag_B           95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL--DLVTMKK  172 (427)
T ss_dssp             EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH--HHHHHHH
T ss_pred             cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH--HHHHHHH
Confidence                     010                  011222222 22110    0111    1       122222  2555566


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      +..+.+++++|+|+..+.+.+...+...+.+.+...|..++.+|.+
T Consensus       173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            6688999999999999999999999887777788888888877765

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.78  E-value=4.9e-09  Score=103.76  Aligned_cols=118  Identities=11%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh--hhhhcee---ecCCCC-CCcc-------HHHHHHHHcCCchhhhc
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTL-GLASL--MSKAGLY---LPAKNH-PRLP-------WFDLILADIGDHQSLEQ  410 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~--~a~~G~~---vp~~~~-~~l~-------~~d~i~~~ig~~~~~~~  410 (623)
                      -.+++| ++++|+||||||||||+|++ |+..+  ..-...+   .|..+. ..+.       .|......-...+.+.-
T Consensus        11 ~~~~~G-~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~   89 (219)
T 1s96_A           11 HHMAQG-TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV   89 (219)
T ss_dssp             ----CC-CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             ccCCCC-cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence            356788 99999999999999999999 66542  1100001   010000 0011       12221110000111110


Q ss_pred             ccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974          411 NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL  476 (623)
Q Consensus       411 ~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l  476 (623)
                       ...+.|--+  ..+...+..++++|||     +|+.....+...+.     .+.+|+++||+.+.
T Consensus        90 -~~~~yg~~~--~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~  142 (219)
T 1s96_A           90 -FGNYYGTSR--EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIE  142 (219)
T ss_dssp             -TTEEEEEEH--HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHH
T ss_pred             -HhccCCCCH--HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHH
Confidence             011111111  1233345568999999     99999988887432     47899999999773

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.78  E-value=6.7e-10  Score=104.43  Aligned_cols=55  Identities=13%  Similarity=0.054  Sum_probs=45.1

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCcc
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP  393 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~  393 (623)
                      ..++++.|++..+  ++||++.+| ++++|+||||||||||+|++        +|.. |..+...++
T Consensus        10 ~~~~~~~~g~~~~l~~vsl~i~~G-e~v~L~G~nGaGKTTLlr~l--------~g~l-~~~G~V~~~   66 (158)
T 1htw_A           10 DEFSMLRFGKKFAEILLKLHTEKA-IMVYLNGDLGAGKTTLTRGM--------LQGI-GHQGNVKSP   66 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSSC-EEEEEECSTTSSHHHHHHHH--------HHHT-TCCSCCCCC
T ss_pred             CHHHHHHHHHHHHHhccccccCCC-CEEEEECCCCCCHHHHHHHH--------HHhC-CCCCeEEEC
Confidence            4567788876555  889999999 99999999999999999999        7766 776654444

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.77  E-value=3.3e-09  Score=110.20  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH-hhhhhhh------------------------hh-ceeecCCCCCCcc---HHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL-GLASLMS------------------------KA-GLYLPAKNHPRLP---WFDLIL  399 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a------------------------~~-G~~vp~~~~~~l~---~~d~i~  399 (623)
                      +| ++++|+|||||||||+++.+ |++.+..                        +. ..++++.. ...+   .++++.
T Consensus       101 ~g-~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~-~~~p~~~v~~~v~  178 (304)
T 1rj9_A          101 KG-RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE-GTDSAALAYDAVQ  178 (304)
T ss_dssp             SS-SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT-TCCHHHHHHHHHH
T ss_pred             CC-eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC-CCCHHHHHHHHHH
Confidence            46 89999999999999999999 5554311                        11 12455543 2222   223332


Q ss_pred             H---H---------cCCchhhhcccccccHHHHHHHHHHHhcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc
Q 006974          400 A---D---------IGDHQSLEQNLSTFSGHISRIVDILELVSRES--LVLIDEIGSGTDPSEGVALATSILQYLRDRVG  465 (623)
Q Consensus       400 ~---~---------ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~~--LlLLDEp~~glD~~~~~~l~~all~~l~~~~~  465 (623)
                      .   .         .|..+.....++.+|  .++++++++++.+|.  ++.|| |+++.+      +...+..+....+.
T Consensus       179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs--~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~  249 (304)
T 1rj9_A          179 AMKARGYDLLFVDTAGRLHTKHNLMEELK--KVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGL  249 (304)
T ss_dssp             HHHHHTCSEEEECCCCCCTTCHHHHHHHH--HHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCC
T ss_pred             HHHhCCCCEEEecCCCCCCchHHHHHHHH--HHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCC
Confidence            1   0         122222223334444  236778888999999  55566 454443      33322222223378


Q ss_pred             EEEEEcCchh
Q 006974          466 LAVVTTHYAD  475 (623)
Q Consensus       466 ~vii~TH~~~  475 (623)
                      ++|++||+.+
T Consensus       250 t~iivTh~d~  259 (304)
T 1rj9_A          250 TGVIVTKLDG  259 (304)
T ss_dssp             SEEEEECTTS
T ss_pred             cEEEEECCcc
Confidence            9999999854

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.74  E-value=1.8e-08  Score=109.49  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             hcccccccHHHH-HHHHHHHhc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974          409 EQNLSTFSGHIS-RIVDILELV----SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD  483 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~l~----~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~  483 (623)
                      .++++.|||||+ +++++++++    .+|+++|||||+++||+.....+.. ++..+...+.++|++||+..+...|+++
T Consensus       328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~~~d~~  406 (430)
T 1w1w_A          328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDAL  406 (430)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred             ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHHhCCEE
Confidence            356789999999 788888887    6899999999999999999999998 4555655578999999998877889888


Q ss_pred             ceee
Q 006974          484 TRFE  487 (623)
Q Consensus       484 ~~i~  487 (623)
                      +.+.
T Consensus       407 ~~~~  410 (430)
T 1w1w_A          407 VGVY  410 (430)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.72  E-value=9.5e-08  Score=98.82  Aligned_cols=155  Identities=14%  Similarity=0.174  Sum_probs=87.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH-hhhhh-hhhhceeecCCCCCCccHHHHHHH---HcCCchhhhcccccccHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL-GLASL-MSKAGLYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIV  423 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-~a~~G~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~stfS~g~~rl~  423 (623)
                      +| ++++|+||||+||||+++.+ +.+.. ..+...++.++. ......+++-.   ..|....     ...+..  .+.
T Consensus       104 ~g-~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~-~r~~a~eqL~~~~~~~gl~~~-----~~~~~~--~l~  174 (296)
T 2px0_A          104 HS-KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT-YRIAAVEQLKTYAELLQAPLE-----VCYTKE--EFQ  174 (296)
T ss_dssp             CS-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC-SSTTHHHHHHHHHTTTTCCCC-----BCSSHH--HHH
T ss_pred             CC-cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc-ccchHHHHHHHHHHhcCCCeE-----ecCCHH--HHH
Confidence            56 89999999999999999999 34433 232335666654 23333443322   2232110     012222  233


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCcEEEE-EcCchh-HHhhccccceeeCceEEEecCcc
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD---RVGLAVV-TTHYAD-LSCLKDKDTRFENAATEFSLETL  498 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~---~~~~vii-~TH~~~-l~~~~~~~~~i~~g~~~~~~~~l  498 (623)
                      .+++.+.+++++|+|  |.|+|+.....+.. +...+..   .+.++++ +||... +..+++....+..+.+.++.-. 
T Consensus       175 ~al~~~~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVltk~D-  250 (296)
T 2px0_A          175 QAKELFSEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKID-  250 (296)
T ss_dssp             HHHHHGGGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEECTT-
T ss_pred             HHHHHhcCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEeCCC-
Confidence            344445889999999  88899876655444 4443321   1223444 588854 6777776655555666654211 


Q ss_pred             ccccccccCCCCCcHHHHHHHHCCCC
Q 006974          499 RPTYRILWGSTGDSNALNIAKSIGFD  524 (623)
Q Consensus       499 ~~~y~l~~g~~~~s~a~~ia~~~g~~  524 (623)
                              +......++.++...|+|
T Consensus       251 --------~~~~~g~~~~~~~~~~~p  268 (296)
T 2px0_A          251 --------ETTSLGSVFNILAESKIG  268 (296)
T ss_dssp             --------TCSCCHHHHHHHHTCSCC
T ss_pred             --------cccchhHHHHHHHHHCcC
Confidence                    111223456666666655

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.70  E-value=2.3e-08  Score=104.98  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=34.0

Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ..+|+++|||||++ +|+....+|.. +++... .+.++|++||+.+
T Consensus       132 ~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~~-~~~~~Il~t~~~~  175 (354)
T 1sxj_E          132 AHRYKCVIINEANS-LTKDAQAALRR-TMEKYS-KNIRLIMVCDSMS  175 (354)
T ss_dssp             --CCEEEEEECTTS-SCHHHHHHHHH-HHHHST-TTEEEEEEESCSC
T ss_pred             CCCCeEEEEeCccc-cCHHHHHHHHH-HHHhhc-CCCEEEEEeCCHH
Confidence            56899999999999 99998888877 444433 3578999999965

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.70  E-value=2.5e-08  Score=106.32  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=61.4

Q ss_pred             cccccccHHHH-HHHH------HHHhcCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcc
Q 006974          410 QNLSTFSGHIS-RIVD------ILELVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKD  481 (623)
Q Consensus       410 ~~~stfS~g~~-rl~~------~~~l~~~-~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~  481 (623)
                      .+++.+|+||+ ++.+      +.+++.+ |+++|||||++|+|+.....+... +..+.+ +.+||+|||+.++..+|+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~~~-~~~vi~~th~~~~~~~~d  353 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI-FRKVKS-IPQMIIITHHRELEDVAD  353 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHCCS-CSEEEEEESCGGGGGGCS
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHhcc-CCeEEEEEChHHHHhhCC
Confidence            56789999999 5643      3446778 999999999999999999999984 444433 468999999988888888


Q ss_pred             ccceee
Q 006974          482 KDTRFE  487 (623)
Q Consensus       482 ~~~~i~  487 (623)
                      +++.+.
T Consensus       354 ~~~~l~  359 (371)
T 3auy_A          354 VIINVK  359 (371)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.63  E-value=4e-09  Score=112.24  Aligned_cols=137  Identities=13%  Similarity=0.087  Sum_probs=78.3

Q ss_pred             EEceeeee---cCCc------------c-ccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCC
Q 006974          328 TVGSLSKG---ISDF------------P-VPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPR  391 (623)
Q Consensus       328 ~~~~l~~~---y~~~------------~-v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~  391 (623)
                      ++++++++   |+..            . -++++.+.+| ++++|+||||||||||++++        .|.+-|..+...
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G-~~i~ivG~sGsGKSTll~~l--------~~~~~~~~g~I~  207 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLE-RVIVVAGETGSGKTTLMKAL--------MQEIPFDQRLIT  207 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTT-CCEEEEESSSSCHHHHHHHH--------HTTSCTTSCEEE
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHHHHH--------HhcCCCCceEEE
Confidence            46778877   7421            1 2689999999 89999999999999999999        444444333111


Q ss_pred             ccHHHHHHHHcCCchhhhccccc---------ccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 006974          392 LPWFDLILADIGDHQSLEQNLST---------FSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR  461 (623)
Q Consensus       392 l~~~d~i~~~ig~~~~~~~~~st---------fS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~  461 (623)
                      +....    .+.... ....++.         ++++.. +-.+..++...|+.+++||+..       ..+.. +++.+.
T Consensus       208 ie~~~----e~~~~~-~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~-~l~~l~  274 (361)
T 2gza_A          208 IEDVP----ELFLPD-HPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD-FINVAA  274 (361)
T ss_dssp             EESSS----CCCCTT-CSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH-HHHHHH
T ss_pred             ECCcc----ccCccc-cCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH-HHHHHh
Confidence            11000    000000 0000000         012222 3334445667899999999975       12233 344454


Q ss_pred             cCCcEEEEEcCchhHHhhcccccee
Q 006974          462 DRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       462 ~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      ....+++.++|.......+++...+
T Consensus       275 ~g~~~~l~t~H~~~~~~~~~Rl~~l  299 (361)
T 2gza_A          275 SGHGGSITSCHAGSCELTFERLALM  299 (361)
T ss_dssp             TTCCSCEEEEECSSHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCHHHHHHHHHHH
Confidence            4345679999997766666655443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.62  E-value=9.2e-08  Score=94.70  Aligned_cols=138  Identities=12%  Similarity=0.116  Sum_probs=76.5

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhh-hhhhhhceeecCCCCCCccHHHHHHHHcCCc-hhh---------h---cc
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLA-SLMSKAGLYLPAKNHPRLPWFDLILADIGDH-QSL---------E---QN  411 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~-~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~---------~---~~  411 (623)
                      -+.+| ++++|+||||+|||||+..++.. ........|+..+. . ..-+.+.+..+|.. +..         +   ..
T Consensus        19 Gl~~G-~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~-~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   95 (247)
T 2dr3_A           19 GIPER-NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-H-PVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAG   95 (247)
T ss_dssp             SEETT-CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-C-HHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTT
T ss_pred             CCCCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-C-HHHHHHHHHHcCCCHHHHhhCCcEEEEecchhh
Confidence            46788 89999999999999997766222 22222334444332 1 11111122233322 100         0   00


Q ss_pred             c------------ccccHHH-H-HHHHHHHhcCCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          412 L------------STFSGHI-S-RIVDILELVSRESLVLIDEIGSGT--DPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       412 ~------------stfS~g~-~-rl~~~~~l~~~~~LlLLDEp~~gl--D~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .            ...+... . ++..+.. ..+++++++|+|+...  |+.....+...+.+.+++.++++|+++|...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~  174 (247)
T 2dr3_A           96 IGKSKEYEKYIVHDLTDIREFIEVLRQAIR-DINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV  174 (247)
T ss_dssp             TCC--CCCSCBCSCCSSHHHHHHHHHHHHH-HHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             cccccccccccccCccCHHHHHHHHHHHHH-HhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            0            0111111 1 2222221 2478999999999887  6655555666677777788899999999864


Q ss_pred             H---------Hhhccccceee
Q 006974          476 L---------SCLKDKDTRFE  487 (623)
Q Consensus       476 l---------~~~~~~~~~i~  487 (623)
                      .         ..++|.++.+.
T Consensus       175 ~~~~~~~~~~~~~~D~vi~L~  195 (247)
T 2dr3_A          175 GERGFGGPGVEHGVDGIIRLD  195 (247)
T ss_dssp             ---CCC-CCHHHHSSEEEEEE
T ss_pred             CcccccccccceeEEEEEEEE
Confidence            2         35666655543

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.61  E-value=3.7e-08  Score=104.53  Aligned_cols=79  Identities=14%  Similarity=0.040  Sum_probs=65.9

Q ss_pred             hcccc-cccHHHH-HHHHHHHhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHH
Q 006974          409 EQNLS-TFSGHIS-RIVDILELV---------SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLS  477 (623)
Q Consensus       409 ~~~~s-tfS~g~~-rl~~~~~l~---------~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~  477 (623)
                      +++++ .+|+||+ +++++++++         .+|+++||||||++||+.....+...+.+ +   +.++|++||. +. 
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~-~---~qt~i~~th~-~~-  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS-V---PQAIVTGTEL-AP-  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH-S---SEEEEEESSC-CT-
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh-c---CcEEEEEEec-cc-
Confidence            45677 8999999 789999998         89999999999999999999999884433 3   3688999995 33 


Q ss_pred             hhccccceeeCceEEEe
Q 006974          478 CLKDKDTRFENAATEFS  494 (623)
Q Consensus       478 ~~~~~~~~i~~g~~~~~  494 (623)
                       .+++++.+.+|++...
T Consensus       333 -~~~~i~~l~~G~i~~~  348 (359)
T 2o5v_A          333 -GAALTLRAQAGRFTPV  348 (359)
T ss_dssp             -TCSEEEEEETTEEEEC
T ss_pred             -cCCEEEEEECCEEEec
Confidence             8899999999988654

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.61  E-value=3.5e-07  Score=96.76  Aligned_cols=121  Identities=17%  Similarity=0.139  Sum_probs=69.2

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhh-hhhhhhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGL-ASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHISRIVD  424 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl-~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~rl~~  424 (623)
                      +++| +++.|.||||+|||||+.+++. +........|+..+. . +..  ....++|... .+. -....+.++ -+..
T Consensus        58 l~~G-~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~-~-~~~--~~a~~lG~~~~~l~-i~~~~~~e~-~l~~  130 (349)
T 2zr9_A           58 LPRG-RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH-A-LDP--EYAKKLGVDTDSLL-VSQPDTGEQ-ALEI  130 (349)
T ss_dssp             EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-C-CCH--HHHHHTTCCGGGCE-EECCSSHHH-HHHH
T ss_pred             ccCC-eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-C-cCH--HHHHHcCCCHHHeE-EecCCCHHH-HHHH
Confidence            5578 8999999999999999888832 222222335665553 2 221  1244566431 111 111223332 2333


Q ss_pred             HHHh--cCCCcEEEEeCCCCCCC----------H---HHH---HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          425 ILEL--VSRESLVLIDEIGSGTD----------P---SEG---VALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       425 ~~~l--~~~~~LlLLDEp~~glD----------~---~~~---~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +..+  ..+|++|++|+|++.+.          +   ...   ..+...+...+++.++++|+++|..
T Consensus       131 ~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~  198 (349)
T 2zr9_A          131 ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR  198 (349)
T ss_dssp             HHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred             HHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence            3333  35699999999999883          2   111   1222224434466789999999964

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.52  E-value=3.6e-07  Score=94.42  Aligned_cols=122  Identities=17%  Similarity=0.120  Sum_probs=68.1

Q ss_pred             ceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHH---HHHHcCCc
Q 006974          330 GSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDL---ILADIGDH  405 (623)
Q Consensus       330 ~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~---i~~~ig~~  405 (623)
                      +++++.|+...-++++.  +| ++++|+|+||+||||+++.+ +++........++-++. ..-...++   +....|+.
T Consensus        80 ~~l~~~~~~~~~~i~~~--~~-~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~  155 (295)
T 1ls1_A           80 EALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVP  155 (295)
T ss_dssp             HHHHHHTTSSCCCCCCC--SS-EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHCCCCceeecC--CC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc-ccHhHHHHHHHhcccCCeE
Confidence            34556665432356666  67 89999999999999999999 44433322223333322 11111111   22223322


Q ss_pred             hhh---hcccccccHHHHHHHHHHHhcCCCcEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 006974          406 QSL---EQNLSTFSGHISRIVDILELVSRESLVLIDEI-GSGTDPSEGVALATSILQYL  460 (623)
Q Consensus       406 ~~~---~~~~stfS~g~~rl~~~~~l~~~~~LlLLDEp-~~glD~~~~~~l~~all~~l  460 (623)
                      -..   ...+.    ...+..+......++++||+|+| +.|+|+....++.. +...+
T Consensus       156 ~~~~~~~~~p~----~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~-~~~~~  209 (295)
T 1ls1_A          156 VLEVMDGESPE----SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR-LKEVL  209 (295)
T ss_dssp             EEECCTTCCHH----HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHH
T ss_pred             EEEcCCCCCHH----HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHH-Hhhhc
Confidence            100   01111    12233333334478999999999 88999887777766 44444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.43  E-value=2.4e-08  Score=99.99  Aligned_cols=30  Identities=20%  Similarity=0.098  Sum_probs=26.1

Q ss_pred             cCCCcEEEEe----CCCCCCCHHHHHHHHHHHHH
Q 006974          429 VSRESLVLID----EIGSGTDPSEGVALATSILQ  458 (623)
Q Consensus       429 ~~~~~LlLLD----Ep~~glD~~~~~~l~~all~  458 (623)
                      +.+|+++++|    ||++|+|+.....+...+.+
T Consensus       162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~  195 (246)
T 2bbw_A          162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ  195 (246)
T ss_dssp             TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred             cCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence            8899999999    99999999988888774444

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.42  E-value=1.3e-06  Score=90.62  Aligned_cols=94  Identities=21%  Similarity=0.229  Sum_probs=58.4

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHH---HHHHcCCchhhhcccccccH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDL---ILADIGDHQSLEQNLSTFSG  417 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~---i~~~ig~~~~~~~~~stfS~  417 (623)
                      ++++...++ ++++|+||||+||||+++.+ +.+........++.++. ......++   +...+|..-     +...|+
T Consensus        96 ~~~~~~~~~-~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~-----~~~~s~  168 (306)
T 1vma_A           96 KLNVPPEPP-FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATV-----ISHSEG  168 (306)
T ss_dssp             CCCCCSSSC-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEE-----ECCSTT
T ss_pred             CCcccCCCC-eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcE-----EecCCc
Confidence            455666677 89999999999999999999 44443322223444332 22233332   334444431     233455


Q ss_pred             HHH-HH---HHHHHhcCCCcEEEEeCCCC
Q 006974          418 HIS-RI---VDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       418 g~~-rl---~~~~~l~~~~~LlLLDEp~~  442 (623)
                      ++. ++   +++.+...+++++|+|+|+.
T Consensus       169 ~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          169 ADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            554 44   44455788999999999986

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.37  E-value=6.2e-07  Score=93.98  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=23.8

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL-GLAS  375 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i-gl~~  375 (623)
                      .+| ++++|+|||||||||+++.+ |++.
T Consensus       127 ~~g-~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          127 EKP-YVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             CSS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567 89999999999999999999 5554

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.33  E-value=4.3e-08  Score=106.04  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=79.8

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh---------hhhhhceeecCCC----------C--------CCcc
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS---------LMSKAGLYLPAKN----------H--------PRLP  393 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~---------~~a~~G~~vp~~~----------~--------~~l~  393 (623)
                      ++++++..+ ..++|+|+||+||||||+++ |...         +....| +++...          .        ..++
T Consensus       149 ~i~lelk~g-~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~  226 (416)
T 1udx_A          149 RLRLELMLI-ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLG  226 (416)
T ss_dssp             EEEEEECCS-CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred             eeeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhh
Confidence            788999999 89999999999999999999 4421         001111 122111          0        0011


Q ss_pred             HHHHHHHH----------cCCchhhhcccccccHHHHH-HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974          394 WFDLILAD----------IGDHQSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD  462 (623)
Q Consensus       394 ~~d~i~~~----------ig~~~~~~~~~stfS~g~~r-l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~  462 (623)
                        ...+..          ++..   ..++..||+++++ ..++.+++..|.+|++    +++|+... .....+.+.+.+
T Consensus       227 --~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~  296 (416)
T 1udx_A          227 --LEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAR  296 (416)
T ss_dssp             --HHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHh
Confidence              111111          1111   4667789999994 5566678899999999    99999876 444446666666


Q ss_pred             CCcEEEEEc-Cchh-HHhhc
Q 006974          463 RVGLAVVTT-HYAD-LSCLK  480 (623)
Q Consensus       463 ~~~~vii~T-H~~~-l~~~~  480 (623)
                      .+.+++++| |..+ +..+.
T Consensus       297 ~g~~vi~iSA~~g~gi~eL~  316 (416)
T 1udx_A          297 EGLAVLPVSALTGAGLPALK  316 (416)
T ss_dssp             TTSCEEECCTTTCTTHHHHH
T ss_pred             cCCeEEEEECCCccCHHHHH
Confidence            666666544 5543 54433

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.31  E-value=3.5e-08  Score=94.21  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=22.5

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+.+| ++++|+|||||||||++|++
T Consensus         5 ~i~~g-~~i~l~G~~GsGKSTl~~~L   29 (191)
T 1zp6_A            5 DDLGG-NILLLSGHPGSGKSTIAEAL   29 (191)
T ss_dssp             -CCTT-EEEEEEECTTSCHHHHHHHH
T ss_pred             CCCCC-eEEEEECCCCCCHHHHHHHH
Confidence            35678 89999999999999999999

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.31  E-value=1.6e-07  Score=97.61  Aligned_cols=49  Identities=14%  Similarity=0.272  Sum_probs=40.4

Q ss_pred             CcEEEceeeeecCCccc-cccccc-------------------cCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974          325 SEMTVGSLSKGISDFPV-PIDIKV-------------------ECETRVVVITGPNTGGKTASMKTL-GLAS  375 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v-~i~l~l-------------------~~g~~~~~I~GpNgsGKSTlLk~i-gl~~  375 (623)
                      ++++++||++.|+. .+ .+++.+                   .+| .+++|+||||||||||++++ |++.
T Consensus        36 ~~i~~~~v~~~y~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g-~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           36 EDLSLEEVAEIYLP-LSRLLNFYISSNLRRQAVLEQFLGTNGQRIP-YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             TTCCHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCC-EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             cccchHhHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhccCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            56889999999952 22 777777                   777 89999999999999999999 5543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.30  E-value=6.8e-06  Score=86.93  Aligned_cols=122  Identities=17%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~  424 (623)
                      +++| +++.|+||||+|||||+.+++ .+........|+-.....  ..  ....++|....--......+.++. .+..
T Consensus        58 i~~G-~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~--~ra~rlgv~~~~l~i~~~~~~e~~l~~~~  132 (356)
T 3hr8_A           58 YPRG-RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP--VYAKNLGVDLKSLLISQPDHGEQALEIVD  132 (356)
T ss_dssp             EETT-EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH--HHHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             ccCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch--HHHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence            5578 899999999999999999993 333322233466554322  21  144556654211112223344432 2222


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHH-------------HHHHHH---HHHHHHhcCCcEEEEEcCc
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSE-------------GVALAT---SILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~-------------~~~l~~---all~~l~~~~~~vii~TH~  473 (623)
                      .+.....++++++|..+.-....+             ...+..   .+.....+.++++|++.|-
T Consensus       133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv  197 (356)
T 3hr8_A          133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI  197 (356)
T ss_dssp             HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred             HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence            222246789999999877664110             122222   2333344568899998887

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.29  E-value=2.6e-06  Score=93.36  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=29.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS  375 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~  375 (623)
                      +++|++..| .+++|+||||||||||+++| |++.
T Consensus       285 ~Isl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          285 PLNVEGKAP-FVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             CCCCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceeeccCC-eEEEEECCCcccHHHHHHHHHHHhh
Confidence            688889999 99999999999999999999 5554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.28  E-value=1.3e-08  Score=97.44  Aligned_cols=49  Identities=10%  Similarity=-0.086  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc-hh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHY-AD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~-~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      .|+|+..... .. .+..+...+.++|.+||. ++ +..+|+++.  .+|++.++
T Consensus       126 ~~ld~~~~~~-~~-~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~  176 (189)
T 2bdt_A          126 EQMGERCLEL-VE-EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC  176 (189)
T ss_dssp             ---CGGGGHH-HH-HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred             ccCCHHHHHH-HH-HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence            3788877766 55 444555556789999998 65 677888776  67765443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.23  E-value=1.9e-07  Score=96.21  Aligned_cols=99  Identities=13%  Similarity=0.136  Sum_probs=59.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH-hhhhhhh---hhceeecCCCC----------------------------CCccHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL-GLASLMS---KAGLYLPAKNH----------------------------PRLPWFD  396 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a---~~G~~vp~~~~----------------------------~~l~~~d  396 (623)
                      .+ .+++|+||+|||||||.+.+ +++....   ..+.+|+++++                            ..+..+.
T Consensus        30 ~~-~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~  108 (290)
T 1odf_A           30 CP-LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ  108 (290)
T ss_dssp             SC-EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence            45 79999999999999999998 5544321   12233344331                            0111223


Q ss_pred             HHHHHcCCc------hh--hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          397 LILADIGDH------QS--LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       397 ~i~~~ig~~------~~--~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                      +.+..+...      ..  +...-..+|||+. |+..+...+-+|++||+||++.++|+..
T Consensus       109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred             HHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence            334443322      11  2223457899998 5555422111899999999999999864

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.12  E-value=1.1e-05  Score=85.02  Aligned_cols=119  Identities=13%  Similarity=0.007  Sum_probs=69.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-hhhhh-hhhceeecCCCCC-CccHHHHHHHHcCCchhhhcccccccHHH-H-HHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTLG-LASLM-SKAGLYLPAKNHP-RLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVDILE  427 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~ig-l~~~~-a~~G~~vp~~~~~-~l~~~d~i~~~ig~~~~~~~~~stfS~g~-~-rl~~~~~  427 (623)
                      .++|+||+|+||||+++.+. .+... ...-.++.+.... ....+..++..+|...    +....+... . ++...+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~l~~~l~  121 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF----PRRGLSRDEFLALLVEHLR  121 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC----CSSCCCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC----CCCCCCHHHHHHHHHHHHh
Confidence            89999999999999999982 22111 0111234433211 1234556666665421    111222222 2 3333344


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCcEEEEEcCchhHH
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD---RVGLAVVTTHYADLS  477 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~---~~~~vii~TH~~~l~  477 (623)
                      ....|.+|+|||+... |+.....|.. +++.+..   .+.++|++||+.++.
T Consensus       122 ~~~~~~vlilDE~~~l-~~~~~~~L~~-~~~~~~~~~~~~~~iI~~~~~~~~~  172 (389)
T 1fnn_A          122 ERDLYMFLVLDDAFNL-APDILSTFIR-LGQEADKLGAFRIALVIVGHNDAVL  172 (389)
T ss_dssp             HTTCCEEEEEETGGGS-CHHHHHHHHH-HTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred             hcCCeEEEEEECcccc-chHHHHHHHH-HHHhCCCCCcCCEEEEEEECCchHH
Confidence            4567889999999876 7766666655 3333333   467889999987643

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.10  E-value=1e-05  Score=88.45  Aligned_cols=126  Identities=10%  Similarity=0.033  Sum_probs=70.5

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh--hhceeecCCCCCCccHHHHHHH-HcCCc----------------
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILA-DIGDH----------------  405 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a--~~G~~vp~~~~~~l~~~d~i~~-~ig~~----------------  405 (623)
                      .-+.+| ++++|.|++|+|||||+..++......  ....|+-.+. ..-.+..+++. ..|..                
T Consensus       198 gGl~~G-~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~  275 (454)
T 2r6a_A          198 SGFQRS-DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM-SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGK  275 (454)
T ss_dssp             SSBCTT-CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS-CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHH
T ss_pred             CCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHH
Confidence            457788 899999999999999999994433221  1223333221 11112222221 11111                


Q ss_pred             -----------hhhhcccccccHHHHH-HHHHHHhcCCCcEEEEeCCCCCCCH--------HHHHHHHHHHHHHHhcCCc
Q 006974          406 -----------QSLEQNLSTFSGHISR-IVDILELVSRESLVLIDEIGSGTDP--------SEGVALATSILQYLRDRVG  465 (623)
Q Consensus       406 -----------~~~~~~~stfS~g~~r-l~~~~~l~~~~~LlLLDEp~~glD~--------~~~~~l~~all~~l~~~~~  465 (623)
                                 ...-.....+|.++.+ ....+....++++|++|+++...++        .....+...+....++.++
T Consensus       276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i  355 (454)
T 2r6a_A          276 LTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEV  355 (454)
T ss_dssp             HHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence                       0001123456777664 2222223368999999999987743        2234444433333335689


Q ss_pred             EEEEEcC
Q 006974          466 LAVVTTH  472 (623)
Q Consensus       466 ~vii~TH  472 (623)
                      +||+++|
T Consensus       356 ~vi~~sq  362 (454)
T 2r6a_A          356 PVIALSQ  362 (454)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEec
Confidence            9999999

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.05  E-value=3.6e-07  Score=96.17  Aligned_cols=49  Identities=16%  Similarity=0.089  Sum_probs=40.7

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL  376 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~  376 (623)
                      ++++++++.|++..+  ++++++.+| .+++|+||||||||||++++ |++.+
T Consensus        30 ie~~~~~~~~~~~~~l~~i~~~~~~g-~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           30 AESRRADHRAAVRDLIDAVLPQTGRA-IRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HTCSSHHHHHHHHHHHHHHGGGCCCS-EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HeeCCcccccChHHHHHhCCcccCCC-eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            556788888865444  899999999 99999999999999999999 45443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.05  E-value=1.3e-06  Score=86.30  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=21.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++||++.+| ++++|+|||||||||+++++
T Consensus        19 ~~sl~v~~G-~ii~l~Gp~GsGKSTl~~~L   47 (231)
T 3lnc_A           19 PGSMLKSVG-VILVLSSPSGCGKTTVANKL   47 (231)
T ss_dssp             ---CCEECC-CEEEEECSCC----CHHHHH
T ss_pred             CCCcccCCC-CEEEEECCCCCCHHHHHHHH
Confidence            899999999 99999999999999999999

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.05  E-value=2.3e-06  Score=89.26  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH-hh
Q 006974          352 RVVVITGPNTGGKTASMKTL-GL  373 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i-gl  373 (623)
                      ++++|+|+||||||||||.+ |+
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            68999999999999999999 44

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.00  E-value=5e-06  Score=96.81  Aligned_cols=133  Identities=15%  Similarity=0.168  Sum_probs=77.8

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh-----hceeecCCCCCCccHHHHHHHHcCCc--------------hh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLMSK-----AGLYLPAKNHPRLPWFDLILADIGDH--------------QS  407 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~-----~G~~vp~~~~~~l~~~d~i~~~ig~~--------------~~  407 (623)
                      +..| +.++|+|||||||||++.++.+......     +....|... ......+.+...+|..              ..
T Consensus       106 l~~~-~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~-La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~  183 (773)
T 2xau_A          106 YQNN-QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV-AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS  183 (773)
T ss_dssp             HHHC-SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH-HHHHHHHHHHHHTTCCBTTTEEEEETTEEECC
T ss_pred             HhCC-CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH-HHHHHHHHHHHHhCCchhheecceeccccccC
Confidence            4456 7999999999999998888722211111     112234321 1111223333333321              01


Q ss_pred             hhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EcCchh-HHhhccc
Q 006974          408 LEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVV-TTHYAD-LSCLKDK  482 (623)
Q Consensus       408 ~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l~~~~~~vii-~TH~~~-l~~~~~~  482 (623)
                      ....+...+.|+. +.......+.++++||+||+.. ++|......+...+... .....++++ +||+.+ +..+.+.
T Consensus       184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~~l~~~~~~  261 (773)
T 2xau_A          184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFND  261 (773)
T ss_dssp             TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCHHHHHHTTS
T ss_pred             CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceEEEEeccccHHHHHHHhcC
Confidence            2234566778887 5555555788999999999994 99987666665544432 223345666 599865 5555544

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.98  E-value=2.9e-06  Score=81.57  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=23.1

Q ss_pred             cccccCCceEEEEEcCCCCCHHHHHHHH-hh
Q 006974          344 DIKVECETRVVVITGPNTGGKTASMKTL-GL  373 (623)
Q Consensus       344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl  373 (623)
                      |+++.+| ++++|+|||||||||+++++ |+
T Consensus         1 s~~m~~g-~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            1 SNAMNKA-NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             ----CCC-CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCC-cEEEEECcCCCCHHHHHHHHHhh
Confidence            3566788 89999999999999999999 44

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.98  E-value=2.9e-05  Score=81.66  Aligned_cols=129  Identities=14%  Similarity=0.121  Sum_probs=71.7

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-------hhhceeecCCCCCCccHHHHHHHHcCCchh-hhccc---cc
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLM-------SKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNL---ST  414 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-------a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~~~---st  414 (623)
                      -+++| +++.|+||+|+|||||+.+++....+       .....|+..+......-+.++...+|.... +-.++   ..
T Consensus       118 Gl~~G-~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~  196 (343)
T 1v5w_A          118 GIESM-AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA  196 (343)
T ss_dssp             SBCSS-EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCC-eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence            36678 89999999999999999999554322       122245555431111123344555665321 00111   22


Q ss_pred             ccHHHH-H-HHHHHHhc----CCCcEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          415 FSGHIS-R-IVDILELV----SRESLVLIDEIGSGTDPS--------E----GVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       415 fS~g~~-r-l~~~~~l~----~~~~LlLLDEp~~glD~~--------~----~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ++.+.. . +..+..++    .++++|++|.++.-..+.        +    ...+...+.....+.+++||+++|-..
T Consensus       197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~  275 (343)
T 1v5w_A          197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA  275 (343)
T ss_dssp             CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence            333322 2 22222222    778999999999876432        1    123333344444456889999999753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.94  E-value=3.2e-05  Score=84.96  Aligned_cols=107  Identities=19%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhce-eecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGL-YLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS  420 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~-~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~  420 (623)
                      .+++.++.|   ++|+||+|+||||++|+++-.     .+. |+.-+.                .+.......  .++.+
T Consensus        43 ~~g~~~p~g---vLL~GppGtGKT~Laraia~~-----~~~~f~~is~----------------~~~~~~~~g--~~~~~   96 (476)
T 2ce7_A           43 RIGARMPKG---ILLVGPPGTGKTLLARAVAGE-----ANVPFFHISG----------------SDFVELFVG--VGAAR   96 (476)
T ss_dssp             TTTCCCCSE---EEEECCTTSSHHHHHHHHHHH-----HTCCEEEEEG----------------GGTTTCCTT--HHHHH
T ss_pred             hcCCCCCCe---EEEECCCCCCHHHHHHHHHHH-----cCCCeeeCCH----------------HHHHHHHhc--ccHHH
Confidence            445555544   789999999999999999221     121 111010                000000000  12333


Q ss_pred             -HHHHHHHhcCCCcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHh----cCCcEEEEEcCchh
Q 006974          421 -RIVDILELVSRESLVLIDEIG----------SGTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD  475 (623)
Q Consensus       421 -rl~~~~~l~~~~~LlLLDEp~----------~glD~~~~~~l~~all~~l~----~~~~~vii~TH~~~  475 (623)
                       +-.+..+....|.+|+|||+.          .|.|+.....+.. ++..+.    ..+..+|.+||..+
T Consensus        97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~-LL~~ld~~~~~~~viVIaaTn~~~  165 (476)
T 2ce7_A           97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ-LLVEMDGFDSKEGIIVMAATNRPD  165 (476)
T ss_dssp             HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH-HHHHHHHSCGGGTEEEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH-HHHHHhccCCCCCEEEEEecCChh
Confidence             334444556789999999993          3556655455544 555553    23568889999976

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.89  E-value=5.5e-06  Score=90.90  Aligned_cols=38  Identities=18%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH  389 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~  389 (623)
                      +++|++.+  ++++|+|||||||||||+++        .|...|..|.
T Consensus        22 ~vsl~i~~--e~~~liG~nGsGKSTLl~~l--------~Gl~~p~~G~   59 (483)
T 3euj_A           22 ARTFDFDE--LVTTLSGGNGAGKSTTMAGF--------VTALIPDLTL   59 (483)
T ss_dssp             EEEEECCS--SEEEEECCTTSSHHHHHHHH--------HHHHCCCTTT
T ss_pred             ceEEEEcc--ceEEEECCCCCcHHHHHHHH--------hcCCCCCCCE
Confidence            88999987  79999999999999999999        5655565553

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.86  E-value=2.8e-06  Score=85.61  Aligned_cols=45  Identities=22%  Similarity=0.250  Sum_probs=29.8

Q ss_pred             cEEEcee-eeec-CCccc--cccccccC---CceEEEEEcCCCCCHHHHHHHH
Q 006974          326 EMTVGSL-SKGI-SDFPV--PIDIKVEC---ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       326 ~l~~~~l-~~~y-~~~~v--~i~l~l~~---g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+ +++| ++..+  +++|++.+   | ++++|+||+||||||+.+.+
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g-~~i~l~G~~GsGKSTl~~~L   68 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNG-RSMYLVGMMGSGKTTVGKIM   68 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTT-CCEEEECSTTSCHHHHHHHH
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCC-CEEEEECCCCCCHHHHHHHH
Confidence            5778999 9999 65555  99999999   9 89999999999999999999

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.80  E-value=5.3e-05  Score=78.96  Aligned_cols=128  Identities=14%  Similarity=0.172  Sum_probs=72.2

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-------hhceeecCCCCCCccHHHHHHHHcCCchh-hhcc---ccc
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-------KAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQN---LST  414 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-------~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~~---~st  414 (623)
                      -+++| +++.|.||+|+|||||+.+++......       ....|+..+....-.-+.+++..+|.... +..+   ...
T Consensus       103 Gl~~G-~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~  181 (324)
T 2z43_A          103 GIETR-TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA  181 (324)
T ss_dssp             SEETT-SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCC-cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence            35678 899999999999999999995543221       12245555431111223344556665321 1011   123


Q ss_pred             ccHHHH--HHHHHHHhc---CCCcEEEEeCCCCCCCH--------HHH----HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          415 FSGHIS--RIVDILELV---SRESLVLIDEIGSGTDP--------SEG----VALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       415 fS~g~~--rl~~~~~l~---~~~~LlLLDEp~~glD~--------~~~----~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ++.++.  .+..+..++   .++++|++|+++.-...        .++    ..+...+.....+.+++||++.|-.
T Consensus       182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~  258 (324)
T 2z43_A          182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM  258 (324)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence            344432  233343333   67999999999876532        222    2333334444445688999988864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.79  E-value=8.9e-05  Score=80.33  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccH-HHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSG-HISRIVDIL  426 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~-g~~rl~~~~  426 (623)
                      .+++++||||+||||++..++ .+........++.++. .....++++.   ..+|..-.  ...+.... ...+-.+..
T Consensus        98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~-~r~~a~eqL~~~~~~~gv~~~--~~~~~~dp~~i~~~al~~  174 (433)
T 3kl4_A           98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV-YRPAAYDQLLQLGNQIGVQVY--GEPNNQNPIEIAKKGVDI  174 (433)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC-SCHHHHHHHHHHHHTTTCCEE--CCTTCSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc-cchhHHHHHHHHHHhcCCcee--eccccCCHHHHHHHHHHH
Confidence            899999999999999999984 3332222223444442 2333344332   22232110  00001110 111112222


Q ss_pred             HhcCCCcEEEEeCCCC-C--CCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          427 ELVSRESLVLIDEIGS-G--TDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~-g--lD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      ....+++++|+|+|+. +  .|+.....+.. +...+......+++.+|.
T Consensus       175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~-i~~~~~pd~vlLVlDa~~  223 (433)
T 3kl4_A          175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKE-MYDVLKPDDVILVIDASI  223 (433)
T ss_dssp             TTTTTCSEEEEEECCCSSSCCTTHHHHHHHH-HHHHHCCSEEEEEEEGGG
T ss_pred             HHhcCCCEEEEECCCCccccCCHHHHHHHHH-HHHhhCCcceEEEEeCcc
Confidence            2345899999999995 5  78877777766 555544333445555654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.77  E-value=0.00021  Score=75.53  Aligned_cols=122  Identities=19%  Similarity=0.233  Sum_probs=67.1

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchh-hhcccccccHHHH-HHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQS-LEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~~~~~stfS~g~~-rl~  423 (623)
                      +++| +++.|.||+|+|||||...++.... ......|+..+..  +..  .....+|.... +. -...-+.++. .+.
T Consensus        60 l~~G-~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s--~~~--~~a~~~g~~~~~l~-i~~~~~~e~~~~~~  133 (356)
T 1u94_A           60 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDP--IYARKLGVDIDNLL-CSQPDTGEQALEIC  133 (356)
T ss_dssp             EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH--HHHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred             ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC--ccH--HHHHHcCCChhhee-eeCCCCHHHHHHHH
Confidence            5678 8999999999999999988843322 2223456665532  221  12445554311 10 0011122222 222


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHHH------------H----HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          424 DILELVSRESLVLIDEIGSGTDPSE------------G----VALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~~------------~----~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ..+....++++|++|.++.-....+            .    ..+...+...+++.+++||+++|-.
T Consensus       134 ~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~  200 (356)
T 1u94_A          134 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR  200 (356)
T ss_dssp             HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred             HHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence            1122246899999999998764211            1    1222334444566789999998864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.73  E-value=1.6e-05  Score=77.22  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=24.3

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL-GLAS  375 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~  375 (623)
                      ..+| ++++|+||||||||||+++| |++.
T Consensus        19 ~~~g-~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGR-QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSC-EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCC-eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567 89999999999999999999 5554

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.70  E-value=2.2e-05  Score=85.43  Aligned_cols=102  Identities=15%  Similarity=0.251  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l  428 (623)
                      ..++|.||+|+|||||++.++-.......+   .++.+..     +...+...+...               ........
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-----~~~~~~~~~~~~---------------~~~~~~~~  190 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-----FLNDLVDSMKEG---------------KLNEFREK  190 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-----HHHHHHHHHHTT---------------CHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-----HHHHHHHHHHcc---------------cHHHHHHH
Confidence            578999999999999999994322111001   1222110     111121111000               01111222


Q ss_pred             cC-CCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          429 VS-RESLVLIDEIGSGTDP-SEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       429 ~~-~~~LlLLDEp~~glD~-~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      .. ++++|+|||+....+. .....+.. +++.+.+.+..+|++||..
T Consensus       191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~-~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          191 YRKKVDILLIDDVQFLIGKTGVQTELFH-TFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             HTTTCSEEEEECGGGGSSCHHHHHHHHH-HHHHHHTTTCEEEEEESSC
T ss_pred             hcCCCCEEEEeCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence            23 8999999999887764 45555665 6666777788899999973

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.69  E-value=1.2e-05  Score=84.31  Aligned_cols=120  Identities=14%  Similarity=0.089  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-hhhhh---hhhceeecCCCC-CCccHHHHHHHHcCCchhhhcccccccHHH-H-HHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLG-LASLM---SKAGLYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-RIVD  424 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig-l~~~~---a~~G~~vp~~~~-~~l~~~d~i~~~ig~~~~~~~~~stfS~g~-~-rl~~  424 (623)
                      ..++|+||+|+||||+++.+. .+...   .....++.+... .....+..++..+|...    +....+... . ++..
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~  121 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----PFTGLSIAELYRRLVK  121 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC----CSSSCCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHH
Confidence            689999999999999999982 22111   001122222110 11112333333333211    111222222 2 3433


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEcCchhH
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYL---RDRVGLAVVTTHYADL  476 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l---~~~~~~vii~TH~~~l  476 (623)
                      .+.....|.+|+|||+....+......+. .+++.+   ...+.++|++||+..+
T Consensus       122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~-~l~~~~~~~~~~~~~~I~~~~~~~~  175 (386)
T 2qby_A          122 AVRDYGSQVVIVLDEIDAFVKKYNDDILY-KLSRINSEVNKSKISFIGITNDVKF  175 (386)
T ss_dssp             HHHTCCSCEEEEEETHHHHHHSSCSTHHH-HHHHHHHSCCC--EEEEEEESCGGG
T ss_pred             HHhccCCeEEEEEcChhhhhccCcCHHHH-HHhhchhhcCCCeEEEEEEECCCCh
Confidence            44444558899999997755321112222 244444   2335678999998754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.68  E-value=4.6e-07  Score=97.13  Aligned_cols=56  Identities=9%  Similarity=-0.094  Sum_probs=40.7

Q ss_pred             CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEcCchh-HHhhccccc-eeeCc
Q 006974          431 RE--SLVLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDT-RFENA  489 (623)
Q Consensus       431 ~~--~LlLLDEp~~glD~~~~~~l~~all~~l-~~~~~~vii~TH~~~-l~~~~~~~~-~i~~g  489 (623)
                      +|  ++.++|||+.+.|+........ .++.+ ...|.|++  +|+.. +..+|+++. .+.+|
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~-~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G  199 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLE-GLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTET  199 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHH-HHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccC
Confidence            67  8889999999999988877766 44555 44455543  99975 667888776 56666

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.68  E-value=2.2e-05  Score=86.75  Aligned_cols=29  Identities=10%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++.+.+..+ ..++|.|++||||||+|+++
T Consensus       159 pv~ldL~~~-pHlLIaG~TGSGKSt~L~~l  187 (512)
T 2ius_A          159 PVVADLAKM-PHLLVAGTTGSGASVGVNAM  187 (512)
T ss_dssp             EEEEEGGGS-CSEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEcccC-ceEEEECCCCCCHHHHHHHH
Confidence            566677777 67999999999999999998

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.67  E-value=1.8e-06  Score=85.73  Aligned_cols=49  Identities=16%  Similarity=0.276  Sum_probs=37.0

Q ss_pred             cEEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974          326 EMTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH  389 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~  389 (623)
                      .++++|+...|+.     ++++.+  .+++|+|||||||||+|++|        +|...|..+.
T Consensus         9 ~l~l~~~~~~~~~-----~~~~~~--~~~~i~GpnGsGKSTll~~i--------~g~~~~~~G~   57 (227)
T 1qhl_A            9 SLTLINWNGFFAR-----TFDLDE--LVTTLSGGNGAGKSTTMAAF--------VTALIPDLTL   57 (227)
T ss_dssp             EEEEEEETTEEEE-----EECHHH--HHHHHHSCCSHHHHHHHHHH--------HHHHSCCTTT
T ss_pred             EEEEEeeecccCC-----EEEEcC--cEEEEECCCCCCHHHHHHHH--------hcccccCCCe
Confidence            3677788776643     345544  58899999999999999999        7766677663

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.66  E-value=1.4e-05  Score=84.51  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh-hhh-----h-----------hceeecCCCC------------CC
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS-LMS-----K-----------AGLYLPAKNH------------PR  391 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~-~~a-----~-----------~G~~vp~~~~------------~~  391 (623)
                      ++++.+ .| ++++|+||||+|||||++++ |+.. +..     .           .-.++|+.+.            ..
T Consensus       208 ~L~~~~-~G-~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~  285 (358)
T 2rcn_A          208 PLEEAL-TG-RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWH  285 (358)
T ss_dssp             HHHHHH-TT-SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCCC
T ss_pred             HHHHhc-CC-CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcC
Confidence            334433 57 89999999999999999999 6554 210     0           0124454321            00


Q ss_pred             ccH------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 006974          392 LPW------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD  462 (623)
Q Consensus       392 l~~------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~  462 (623)
                      ++.      |..++..+|+.+..+....++| |++ +++++.                |+.+..+......+++.+.+
T Consensus       286 l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~----------------gli~~~R~~~y~~l~~e~~~  346 (358)
T 2rcn_A          286 LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVEN----------------GAIAETRFENYHRILESMAQ  346 (358)
T ss_dssp             CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHH----------------TSSCHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHh----------------cCCCHHHHHHHHHHHHHHHh
Confidence            110      2234556677777788899999 666 677664                34555666665556666544

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.66  E-value=9.4e-05  Score=77.64  Aligned_cols=118  Identities=14%  Similarity=0.095  Sum_probs=69.1

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHc-CCc-hhhhcccccccHHHH-H
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADI-GDH-QSLEQNLSTFSGHIS-R  421 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~i-g~~-~~~~~~~stfS~g~~-r  421 (623)
                      -+.+| ++++|.|++|+|||||+..++...... ...+|+--+. ..-.+..+++... +.. +.+..  ..||.++. +
T Consensus        42 Gl~~G-~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~~--g~Ls~~e~~~  117 (338)
T 4a1f_A           42 GFNKG-SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHDLES--GRLDDDQWEN  117 (338)
T ss_dssp             SBCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHHH--TCCCHHHHHH
T ss_pred             CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHhc--CCCCHHHHHH
Confidence            46788 899999999999999999985443321 1122332221 1112233333221 222 12222  36888877 7


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC-CcEEEEEcCc
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLR-DR-VGLAVVTTHY  473 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~-~~-~~~vii~TH~  473 (623)
                      +..+...+.+++++|.|+|+.  ++.+-.   . .++.+. +. +..+||+-|-
T Consensus       118 l~~a~~~l~~~~l~I~d~~~~--si~~i~---~-~ir~l~~~~gg~~lIVIDyL  165 (338)
T 4a1f_A          118 LAKCFDHLSQKKLFFYDKSYV--RIEQIR---L-QLRKLKSQHKELGIAFIDYL  165 (338)
T ss_dssp             HHHHHHHHHHSCEEEECCTTC--CHHHHH---H-HHHHHHHHCTTEEEEEEEEE
T ss_pred             HHHHHHHHhcCCeEEeCCCCC--cHHHHH---H-HHHHHHHhcCCCCEEEEech
Confidence            888888777889999999864  444333   3 233343 33 5666666544

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.66  E-value=7.2e-06  Score=88.69  Aligned_cols=46  Identities=17%  Similarity=0.289  Sum_probs=34.2

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA  374 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~  374 (623)
                      .++++++++.|+...+  ++ + ..+| .+++|+|||||||||||+++ |++
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~g-gii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-I-KRPH-GIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-H-TSSS-EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHcCCCHHHHHHHHHH-H-HhcC-CeEEEECCCCCCHHHHHHHHHhhc
Confidence            3456777777765433  44 4 3567 89999999999999999999 443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.65  E-value=5.2e-05  Score=75.65  Aligned_cols=41  Identities=15%  Similarity=0.262  Sum_probs=32.1

Q ss_pred             EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++++.+.|++..+  ++++.+++|   ++|+||||+|||||++++
T Consensus        27 ~l~~l~~~~~~~~~~~~~~~~~~~g---~ll~G~~G~GKTtl~~~i   69 (254)
T 1ixz_A           27 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV   69 (254)
T ss_dssp             HHHHHHHHHHCHHHHHHTTCCCCSE---EEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCCCCHHHHHHHH
Confidence            34566666655433  778888766   799999999999999999

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.63  E-value=2.5e-05  Score=73.76  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=24.1

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++.+.+|  +++|+|||||||||++++|
T Consensus        19 ~~~~~~~~g--~~~i~G~NGsGKStll~ai   46 (182)
T 3kta_A           19 KVVIPFSKG--FTAIVGANGSGKSNIGDAI   46 (182)
T ss_dssp             CEEEECCSS--EEEEEECTTSSHHHHHHHH
T ss_pred             cEEEecCCC--cEEEECCCCCCHHHHHHHH
Confidence            455666666  8999999999999999999

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.63  E-value=1.9e-05  Score=76.30  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH-hhh
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL-GLA  374 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i-gl~  374 (623)
                      .+| ++++|+||||||||||+|++ |+.
T Consensus         2 ~~g-~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGP-RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCC-CEEEEECCCCCCHHHHHHHHHhhC
Confidence            356 79999999999999999999 544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.62  E-value=2.8e-05  Score=82.14  Aligned_cols=113  Identities=17%  Similarity=0.113  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceee-----cCCC-CCCccHHH--H-HHHHcCCchhhhcccccccHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYL-----PAKN-HPRLPWFD--L-ILADIGDHQSLEQNLSTFSGHISRI  422 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~v-----p~~~-~~~l~~~d--~-i~~~ig~~~~~~~~~stfS~g~~rl  422 (623)
                      -.++|+|+||+|||||++.+        .|...     |... ...+..+.  . -+..++.....+......++++++.
T Consensus       168 ~~v~lvG~~gvGKSTLin~L--------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  239 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKAL--------TTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQA  239 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHH--------CSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH--------hCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHH
Confidence            57899999999999999999        33211     1100 00000000  0 0001111222334556677777654


Q ss_pred             HHHHHhcCCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc--Cch
Q 006974          423 VDILELVSRESLVLID-EIGSGTDPSEGVALATSILQYLRDRVGLAVVTT--HYA  474 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLD-Ep~~glD~~~~~~l~~all~~l~~~~~~vii~T--H~~  474 (623)
                      ..+.....+.-++++| +++.|+|..+...+...+.... . +..+|++.  ||.
T Consensus       240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~piilV~NK~Dl  292 (357)
T 2e87_A          240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLPFLVVINKIDV  292 (357)
T ss_dssp             HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSCEEEEECCTTT
T ss_pred             HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCCEEEEEECccc
Confidence            4444455677899999 9999999988777666444432 2 45555555  775

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.58  E-value=0.00067  Score=70.62  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=27.8

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhh
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL-GLAS  375 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~  375 (623)
                      +++|...++ ++++|+||||+||||++..+ +.+.
T Consensus        97 ~l~~~~~~~-~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A           97 RIDFKENRL-NIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             CCCCCTTSC-EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CccccCCCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567777788 89999999999999999999 3443

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.53  E-value=2.7e-05  Score=74.77  Aligned_cols=20  Identities=20%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+.|+||+|+||||+++.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i   74 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAI   74 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.53  E-value=0.00015  Score=73.74  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=24.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++.++.|   ++|+||||+|||||+|++
T Consensus        38 ~~~l~~~~G---vlL~Gp~GtGKTtLakal   64 (274)
T 2x8a_A           38 ALGLVTPAG---VLLAGPPGCGKTLLAKAV   64 (274)
T ss_dssp             HTTCCCCSE---EEEESSTTSCHHHHHHHH
T ss_pred             HcCCCCCCe---EEEECCCCCcHHHHHHHH
Confidence            677777766   899999999999999999

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.53  E-value=0.00034  Score=76.64  Aligned_cols=50  Identities=8%  Similarity=0.123  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHhchhchhhHHHHHHHHHhHHHHHhHhhhHHhhccc
Q 006974          568 AASLHAEIMDLYREDSTSASISVYRYQFAVTSTLSKVDFDAIPNIDQCKD  617 (623)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  617 (623)
                      +..++..++++..+...+....|+++..++..+..+++.+++.++++...
T Consensus       396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~  445 (468)
T 3pxg_A          396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE  445 (468)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555555555544445677888888999999999999888876543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.53  E-value=3.1e-05  Score=74.29  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.0

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++.+| .+++|+|||||||||+++.+
T Consensus         2 ~i~~g-~~i~l~G~~GsGKSTl~~~L   26 (207)
T 2j41_A            2 DNEKG-LLIVLSGPSGVGKGTVRKRI   26 (207)
T ss_dssp             --CCC-CEEEEECSTTSCHHHHHHHH
T ss_pred             CCCCC-CEEEEECCCCCCHHHHHHHH
Confidence            46678 89999999999999999999

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.52  E-value=3.4e-05  Score=74.30  Aligned_cols=40  Identities=15%  Similarity=0.087  Sum_probs=27.6

Q ss_pred             eeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          331 SLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       331 ~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      |++..++....  ...+...+| .+++|+|||||||||+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g-~~i~l~G~sGsGKSTl~~~L   45 (200)
T 3uie_A            4 NIKWHECSVEKVDRQRLLDQKG-CVIWVTGLSGSGKSTLACAL   45 (200)
T ss_dssp             ------CCCCHHHHHHHHTSCC-EEEEEECSTTSSHHHHHHHH
T ss_pred             CCcccccccCHHHHHHhcCCCC-eEEEEECCCCCCHHHHHHHH
Confidence            34444443333  556666788 89999999999999999999

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.52  E-value=2.3e-05  Score=81.96  Aligned_cols=45  Identities=24%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             EEEceeeeecCCccc--cccccccCC------ceEEEEEcCCCCCHHHHHHHH
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECE------TRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g------~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++.++++..||...+  ++++.+..|      .+.++|+||||+|||||++++
T Consensus        19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~i   71 (334)
T 1in4_A           19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHII   71 (334)
T ss_dssp             TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHH
T ss_pred             cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHH
Confidence            344566777776554  677776543      157899999999999999999

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.49  E-value=0.00033  Score=72.56  Aligned_cols=126  Identities=16%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-----------------hhceeecCCCCCCccHHHHHHHHcCCchh-h
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-----------------KAGLYLPAKNHPRLPWFDLILADIGDHQS-L  408 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-----------------~~G~~vp~~~~~~l~~~d~i~~~ig~~~~-~  408 (623)
                      +++| +++.|.||+|+|||||..+++....+.                 ....|+..+....-.-+.+.+..+|.... +
T Consensus        95 l~~g-~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~  173 (322)
T 2i1q_A           95 LESQ-SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV  173 (322)
T ss_dssp             EETT-EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred             ccCC-eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence            5678 899999999999999999986543222                 12245554431111223334555665321 1


Q ss_pred             -hc--ccccccHHHH-H-HHHHHHhc---CCCcEEEEeCCCCCCC--------HHHH----HHHHHHHHHHHhcCCcEEE
Q 006974          409 -EQ--NLSTFSGHIS-R-IVDILELV---SRESLVLIDEIGSGTD--------PSEG----VALATSILQYLRDRVGLAV  468 (623)
Q Consensus       409 -~~--~~stfS~g~~-r-l~~~~~l~---~~~~LlLLDEp~~glD--------~~~~----~~l~~all~~l~~~~~~vi  468 (623)
                       ++  ....++.++. . +..+..++   .++++|++|..+.-..        ..++    ..+...+.....+.+++||
T Consensus       174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi  253 (322)
T 2i1q_A          174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL  253 (322)
T ss_dssp             HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence             11  1223444432 2 22222222   5789999999876432        2222    2334434554556788888


Q ss_pred             EEcCc
Q 006974          469 VTTHY  473 (623)
Q Consensus       469 i~TH~  473 (623)
                      ++.|-
T Consensus       254 ~~nq~  258 (322)
T 2i1q_A          254 VTNQV  258 (322)
T ss_dssp             EEECE
T ss_pred             EECce
Confidence            88875

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.46  E-value=5.8e-06  Score=93.63  Aligned_cols=38  Identities=18%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             eeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          333 SKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       333 ~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.-||...+  .+++.+..| +.++|+||||+||||+++++
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~i   80 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQK-RHVLLIGEPGTGKSMLGQAM   80 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHH
T ss_pred             ceEECchhhHhhccccccCC-CEEEEEeCCCCCHHHHHHHH
Confidence            334454444  888899999 89999999999999999999

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.45  E-value=7.4e-05  Score=71.17  Aligned_cols=36  Identities=19%  Similarity=0.210  Sum_probs=28.2

Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQY  459 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~  459 (623)
                      ...+.+++.+|.++++|  ++++|+.....+...+.+.
T Consensus       154 ~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          154 TDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence            44566677788899999  9999999888888766554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.42  E-value=5.2e-05  Score=82.10  Aligned_cols=40  Identities=20%  Similarity=0.399  Sum_probs=31.9

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+ ++|++..   ++.+..| ++++|+||||+||||+|++|
T Consensus         7 l~~~~~-~~~~~~~---~~~~~~~-~~~~i~G~nG~GKstll~ai   46 (430)
T 1w1w_A            7 LELSNF-KSYRGVT---KVGFGES-NFTSIIGPNGSGKSNMMDAI   46 (430)
T ss_dssp             EEEESC-SSCCSEE---EEECTTC-SEEEEECSTTSSHHHHHHHH
T ss_pred             EEEeCE-EEECCce---eEEecCC-CEEEEECCCCCCHHHHHHHH
Confidence            677788 7886532   2445666 79999999999999999999

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.40  E-value=0.00015  Score=70.71  Aligned_cols=94  Identities=14%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      .+ ..++|+||+|+||||+++.++-.... .....++....         +         ......           +..
T Consensus        51 ~~-~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~---------~---------~~~~~~-----------~~~  100 (242)
T 3bos_A           51 GV-QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI---------H---------ASISTA-----------LLE  100 (242)
T ss_dssp             SC-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG---------G---------GGSCGG-----------GGT
T ss_pred             CC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH---------H---------HHHHHH-----------HHH
Confidence            34 78999999999999999999322111 01112222211         0         000000           011


Q ss_pred             hcCCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCcE-EEEEcCc
Q 006974          428 LVSRESLVLIDEIGSGTDPS-EGVALATSILQYLRDRVGL-AVVTTHY  473 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~-~~~~l~~all~~l~~~~~~-vii~TH~  473 (623)
                      ...++.+|++||+..-.... ....+.. +++.+.+.+.. +|++|+.
T Consensus       101 ~~~~~~vliiDe~~~~~~~~~~~~~l~~-~l~~~~~~~~~~ii~~~~~  147 (242)
T 3bos_A          101 GLEQFDLICIDDVDAVAGHPLWEEAIFD-LYNRVAEQKRGSLIVSASA  147 (242)
T ss_dssp             TGGGSSEEEEETGGGGTTCHHHHHHHHH-HHHHHHHHCSCEEEEEESS
T ss_pred             hccCCCEEEEeccccccCCHHHHHHHHH-HHHHHHHcCCCeEEEEcCC
Confidence            23568999999987644322 2444555 55555554544 7777775

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.37  E-value=1.8e-05  Score=88.55  Aligned_cols=40  Identities=18%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++.+.|+...+  .+++.+ +| ..++|+||||+||||++|++
T Consensus        87 ~~vk~~i~~~~~l~~~~~~~-~g-~~vll~Gp~GtGKTtlar~i  128 (543)
T 3m6a_A           87 EKVKERILEYLAVQKLTKSL-KG-PILCLAGPPGVGKTSLAKSI  128 (543)
T ss_dssp             HHHHHHHHHHHHHHHHSSSC-CS-CEEEEESSSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccC-CC-CEEEEECCCCCCHHHHHHHH
Confidence            344444443222  556666 67 79999999999999999999

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.35  E-value=4.7e-05  Score=84.40  Aligned_cols=29  Identities=17%  Similarity=0.399  Sum_probs=27.1

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++.+..| .+++|+|||||||||+|+++
T Consensus       252 ~l~~~v~~g-~~i~I~GptGSGKTTlL~aL  280 (511)
T 2oap_1          252 YLWLAIEHK-FSAIVVGETASGKTTTLNAI  280 (511)
T ss_dssp             HHHHHHHTT-CCEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHHhCC-CEEEEECCCCCCHHHHHHHH
Confidence            678888999 78999999999999999999

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.34  E-value=0.0021  Score=68.12  Aligned_cols=122  Identities=15%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI  425 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~  425 (623)
                      +++| +++.|.||.|+|||||...++.... ......|+..+. ..-+.   ....+|....--.-....+.++ -+..+
T Consensus        71 l~~G-~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~-s~~~~---~a~~~g~d~~~l~i~~~~~~e~-~l~~l  144 (366)
T 1xp8_A           71 IPRG-RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH-ALDPV---YARALGVNTDELLVSQPDNGEQ-ALEIM  144 (366)
T ss_dssp             EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-CCCHH---HHHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred             ccCC-cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC-ChhHH---HHHHcCCCHHHceeecCCcHHH-HHHHH
Confidence            4578 8999999999999999988843322 222345666554 22121   2445565321000011122222 22223


Q ss_pred             HHh--cCCCcEEEEeCCCCCCC-H------H-----HH-HHHHH---HHHHHHhcCCcEEEEEcCch
Q 006974          426 LEL--VSRESLVLIDEIGSGTD-P------S-----EG-VALAT---SILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       426 ~~l--~~~~~LlLLDEp~~glD-~------~-----~~-~~l~~---all~~l~~~~~~vii~TH~~  474 (623)
                      ..+  ..++++|++|.++.-.. .      .     .. ..+..   .+.....+.+++||++.|-.
T Consensus       145 ~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~  211 (366)
T 1xp8_A          145 ELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR  211 (366)
T ss_dssp             HHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred             HHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence            222  35789999999987552 1      0     11 12222   23333356788899988864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.34  E-value=9.2e-05  Score=70.12  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| ++++|+||||||||||++.+
T Consensus         4 ~g-~~i~i~GpsGsGKSTL~~~L   25 (180)
T 1kgd_A            4 MR-KTLVLLGAHGVGRRHIKNTL   25 (180)
T ss_dssp             CC-CEEEEECCTTSSHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHH
Confidence            46 89999999999999999999

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.34  E-value=0.00062  Score=69.23  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||+|+||||+++.+
T Consensus        55 ~~vll~Gp~GtGKT~la~~l   74 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAV   74 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHH
Confidence            67899999999999999999

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.29  E-value=0.00064  Score=70.47  Aligned_cols=122  Identities=12%  Similarity=0.055  Sum_probs=69.2

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHH-cCCc-hhhhcccccccHHHH-H
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILAD-IGDH-QSLEQNLSTFSGHIS-R  421 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~-ig~~-~~~~~~~stfS~g~~-r  421 (623)
                      -+.+| ++++|.|+.|+|||||+..++...... ...+|+..+. ..-.+..++... .|.. ..+..+...||.++. +
T Consensus        64 Gl~~G-~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~  141 (315)
T 3bh0_A           64 GYKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK  141 (315)
T ss_dssp             SBCTT-CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHH
T ss_pred             CCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHH
Confidence            46788 999999999999999999985443322 1233443332 212223344332 1322 112221123776666 7


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEcCch
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGL--AVVTTHYA  474 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~--vii~TH~~  474 (623)
                      +..+...+.+..+++.|+|+  +++.+   |...+.....+.+..  +||+-|..
T Consensus       142 l~~a~~~l~~~~i~i~d~~~--~~~~~---i~~~i~~l~~~~~~~~~lVVID~l~  191 (315)
T 3bh0_A          142 LSMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMIDYLQ  191 (315)
T ss_dssp             HHHHHHHHHTSCEEEECCSC--CBHHH---HHHHHHHHHHTSSSCCEEEEEECGG
T ss_pred             HHHHHHHHhCCCEEEECCCC--CCHHH---HHHHHHHHHHhcCCCCeEEEEeCch
Confidence            77777766678899999886  44433   333222222334566  77776653

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.29  E-value=0.00054  Score=71.17  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL  426 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~  426 (623)
                      +.+| .++.|.||.|+|||||..+++..  ......|+.......+.          ..+         ......+..+.
T Consensus       120 i~~g-sviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~v~----------~~~---------~~le~~l~~i~  177 (331)
T 2vhj_A          120 RYAS-GMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEPLS----------GYN---------TDFNVFVDDIA  177 (331)
T ss_dssp             EEES-EEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCSST----------TCB---------CCHHHHHHHHH
T ss_pred             CCCC-cEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhhhh----------hhh---------cCHHHHHHHHH
Confidence            4556 78899999999999999999543  22222344441101111          000         11122232233


Q ss_pred             HhcCCCcEEEEeCCCCCCCHHH-----------HHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          427 ELVSRESLVLIDEIGSGTDPSE-----------GVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~-----------~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      ..+.+.++|++||.+.=.....           ...+...+...+.+.++++|++|+-
T Consensus       178 ~~l~~~~LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp  235 (331)
T 2vhj_A          178 RAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP  235 (331)
T ss_dssp             HHHHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             HHHhhCCEEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence            2222223999999986533222           2233333555556678899998884

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.28  E-value=0.00016  Score=66.60  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             cccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          344 DIKVECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ++.+.+|  +.+|+||||+||||+|.+|.
T Consensus        18 ~i~f~~g--~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           18 VVEFKEG--INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEcCCC--eEEEECCCCCCHHHHHHHHH
Confidence            3444444  89999999999999999993

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.27  E-value=0.00012  Score=70.49  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=21.2

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +...+| ++++|+|||||||||++|++
T Consensus        24 m~~~~g-~~i~l~G~~GsGKSTl~~~L   49 (200)
T 4eun_A           24 MTGEPT-RHVVVMGVSGSGKTTIAHGV   49 (200)
T ss_dssp             ----CC-CEEEEECCTTSCHHHHHHHH
T ss_pred             hcCCCC-cEEEEECCCCCCHHHHHHHH
Confidence            445577 89999999999999999999

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.24  E-value=0.00035  Score=72.22  Aligned_cols=101  Identities=14%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcC
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVS  430 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~  430 (623)
                      ..+.|+||+|+||||+++.++-.... .....++.+..     +...+...+      ..       +  ..........
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~-----~~~~~~~~~------~~-------~--~~~~~~~~~~   97 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-----FAQAMVEHL------KK-------G--TINEFRNMYK   97 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-----HHHHHHHHH------HH-------T--CHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH-----HHHHHHHHH------Hc-------C--cHHHHHHHhc
Confidence            56899999999999999999322111 00111222110     011111111      00       0  0011111224


Q ss_pred             CCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          431 RESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       431 ~~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      ++.+|++||+..-. +......+.. +++.+.+.+..+|++|+.
T Consensus        98 ~~~vL~iDEi~~l~~~~~~~~~l~~-~l~~~~~~~~~iii~~~~  140 (324)
T 1l8q_A           98 SVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR  140 (324)
T ss_dssp             TCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEcCcccccCChHHHHHHHH-HHHHHHHCCCeEEEEecC
Confidence            58999999997632 3345555665 556566666677777664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.23  E-value=0.0001  Score=73.85  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhh---ceeecCCC
Q 006974          348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKA---GLYLPAKN  388 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~---G~~vp~~~  388 (623)
                      .+| .+++|+|||||||||++|++        .   |.+.|..+
T Consensus        25 ~~g-~~I~I~G~~GsGKSTl~k~L--------a~~Lg~~~~d~g   59 (252)
T 4e22_A           25 AIA-PVITVDGPSGAGKGTLCKAL--------AESLNWRLLDSG   59 (252)
T ss_dssp             TTS-CEEEEECCTTSSHHHHHHHH--------HHHTTCEEEEHH
T ss_pred             CCC-cEEEEECCCCCCHHHHHHHH--------HHhcCCCcCCCC
Confidence            467 89999999999999999999        4   76666544

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.22  E-value=0.00016  Score=76.49  Aligned_cols=30  Identities=30%  Similarity=0.305  Sum_probs=26.4

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      ++++++.+|  +++|+||||+||||+|++|..
T Consensus        19 ~~~~~~~~g--~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           19 PGTLNFPEG--VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEECCSE--EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEcCC--eEEEECCCCCChhHHHHHHHH
Confidence            677888777  999999999999999999943

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.21  E-value=0.00059  Score=67.29  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-----hhce--eecCCCCCCccHHHHHHHHcCCc--------hhhhcc
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLMS-----KAGL--YLPAKNHPRLPWFDLILADIGDH--------QSLEQN  411 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-----~~G~--~vp~~~~~~l~~~d~i~~~ig~~--------~~~~~~  411 (623)
                      +..| +.++|.||+||||||++...-+-....     ..+.  ..|... ......+++...++..        ...+..
T Consensus        73 i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-la~q~~~~~~~~~~~~~~~~~g~~~~~~~~  150 (235)
T 3llm_A           73 ISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRI-SAVSVAERVAFERGEEPGKSCGYSVRFESI  150 (235)
T ss_dssp             HHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHH-HHHHHHHHHHHTTTCCTTSSEEEEETTEEE
T ss_pred             HhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchH-HHHHHHHHHHHHhccccCceEEEeechhhc
Confidence            3457 799999999999999988772221111     1111  123211 1122233343333321        000000


Q ss_pred             -------cccccHHHHHHHHHHHhcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhcc
Q 006974          412 -------LSTFSGHISRIVDILELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKD  481 (623)
Q Consensus       412 -------~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~  481 (623)
                             +---+.|.. +..+.....+-++|++||.=. ++|..........++....+....++-+|...+ +..+..
T Consensus       151 ~~~~~~~Ivv~Tpg~l-~~~l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~  228 (235)
T 3llm_A          151 LPRPHASIMFCTVGVL-LRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF  228 (235)
T ss_dssp             CCCSSSEEEEEEHHHH-HHHHHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred             cCCCCCeEEEECHHHH-HHHHHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence                   111223332 122333578889999999965 676655544444344432222222334676654 444433

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.21  E-value=0.00012  Score=75.58  Aligned_cols=36  Identities=8%  Similarity=0.057  Sum_probs=28.6

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH  389 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~  389 (623)
                      |.+..| ++++|+||||+||||||+++        .|...|..|.
T Consensus       164 f~~l~g-eiv~l~G~sG~GKSTll~~l--------~g~~~~~~G~  199 (301)
T 1u0l_A          164 KEYLKG-KISTMAGLSGVGKSSLLNAI--------NPGLKLRVSE  199 (301)
T ss_dssp             HHHHSS-SEEEEECSTTSSHHHHHHHH--------STTCCCC---
T ss_pred             HHHhcC-CeEEEECCCCCcHHHHHHHh--------cccccccccc
Confidence            455568 89999999999999999999        7877777663

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.00018  Score=69.16  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|.+.++ ++++|+||+||||||+.+.+
T Consensus        17 ~~~~~~~~~-~~i~l~G~~GsGKsTl~~~L   45 (199)
T 3vaa_A           17 NLYFQSNAM-VRIFLTGYMGAGKTTLGKAF   45 (199)
T ss_dssp             -------CC-CEEEEECCTTSCHHHHHHHH
T ss_pred             ceeEecCCC-CEEEEEcCCCCCHHHHHHHH
Confidence            888999999 89999999999999999999

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.12  E-value=0.00029  Score=73.53  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             eeecCCccc--cccccccCCceE--EEEEcCCCCCHHHHHHHH
Q 006974          333 SKGISDFPV--PIDIKVECETRV--VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       333 ~~~y~~~~v--~i~l~l~~g~~~--~~I~GpNgsGKSTlLk~i  371 (623)
                      +..||...+  .+...+..| ++  ++++||||+||||+++++
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~l   66 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVAL   66 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHH
Confidence            334444333  666777777 66  999999999999999999

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.12  E-value=0.00021  Score=69.25  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=21.3

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+| ++++|+|||||||||+++.+
T Consensus         6 ~~g-~~i~l~GpsGsGKsTl~~~L   28 (208)
T 3tau_A            6 ERG-LLIVLSGPSGVGKGTVREAV   28 (208)
T ss_dssp             CCC-CEEEEECCTTSCHHHHHHHH
T ss_pred             CCC-cEEEEECcCCCCHHHHHHHH
Confidence            357 89999999999999999999

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.10  E-value=0.00011  Score=76.21  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=25.8

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCC
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKN  388 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~  388 (623)
                      +.+.+| ++++|+||||+|||||+|++        .|...|..+
T Consensus       168 ~~~~~G-~~~~lvG~sG~GKSTLln~L--------~g~~~~~~G  202 (307)
T 1t9h_A          168 IPHFQD-KTTVFAGQSGVGKSSLLNAI--------SPELGLRTN  202 (307)
T ss_dssp             GGGGTT-SEEEEEESHHHHHHHHHHHH--------CC-------
T ss_pred             HhhcCC-CEEEEECCCCCCHHHHHHHh--------ccccccccc
Confidence            667788 89999999999999999999        777666655

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.09  E-value=0.0018  Score=76.15  Aligned_cols=21  Identities=33%  Similarity=0.347  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|+||+|+||||+++.++
T Consensus       192 ~~vlL~G~pG~GKT~la~~la  212 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLA  212 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHH
Confidence            457999999999999999993

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.07  E-value=0.00075  Score=69.30  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+..+ ..++|+||+|+||||+.++++
T Consensus        45 ~~~~~-~~vLL~Gp~GtGKT~la~ala   70 (301)
T 3cf0_A           45 GMTPS-KGVLFYGPPGCGKTLLAKAIA   70 (301)
T ss_dssp             CCCCC-SEEEEECSSSSSHHHHHHHHH
T ss_pred             CCCCC-ceEEEECCCCcCHHHHHHHHH
Confidence            34566 789999999999999999993

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.05  E-value=0.0021  Score=61.79  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+||||+++.+
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~   65 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLL   65 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.04  E-value=0.00075  Score=70.61  Aligned_cols=119  Identities=17%  Similarity=0.080  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhh-hhh---hhc---eeecCCCC-CCccHHHHHHHHcCCchhhhcccccccHHH-H-H
Q 006974          352 RVVVITGPNTGGKTASMKTLGLAS-LMS---KAG---LYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI-S-R  421 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~-~~a---~~G---~~vp~~~~-~~l~~~d~i~~~ig~~~~~~~~~stfS~g~-~-r  421 (623)
                      ..++|+||.|+||||+++.++-.. -..   ..+   .++.+... .....+..++..+|...    +....+.+. . +
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~  120 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRV----PFTGLSVGEVYER  120 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCC----CSSCCCHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCC----CCCCCCHHHHHHH
Confidence            689999999999999999993221 110   002   12322211 11233555666665421    111222222 2 3


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHh----cCCcEEEEEcCchh
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPS-EGVALATSILQYLR----DRVGLAVVTTHYAD  475 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~-~~~~l~~all~~l~----~~~~~vii~TH~~~  475 (623)
                      +...+.....+.+|+|||+-.-.+.. ....+.. +++...    ..+.++|++|+...
T Consensus       121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~-l~~~~~~~~~~~~~~~I~~t~~~~  178 (387)
T 2v1u_A          121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYR-ITRINQELGDRVWVSLVGITNSLG  178 (387)
T ss_dssp             HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHH-HHHGGGCC-----CEEEEECSCST
T ss_pred             HHHHHhccCCeEEEEEccHhhhcccCCCChHHHh-HhhchhhcCCCceEEEEEEECCCc
Confidence            33333334457799999997543321 2233333 554433    23457888998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.04  E-value=8.8e-05  Score=77.30  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH-hhh
Q 006974          353 VVVITGPNTGGKTASMKTL-GLA  374 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i-gl~  374 (623)
                      +++|+|||||||||+++++ +++
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999 444

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.03  E-value=0.00042  Score=67.14  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             cccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          344 DIKVECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       344 ~l~l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ++.+.+|  +.+|+||||+||||+|.+|.
T Consensus        18 ~i~f~~~--~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           18 VVEFKEG--INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEECCSE--EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeCCC--eEEEEcCCCCCHHHHHHHHH
Confidence            4445544  89999999999999999993

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.03  E-value=0.00029  Score=72.73  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=27.6

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH  389 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~  389 (623)
                      .+..| ++++|+||||+|||||+|++        . ...|..+.
T Consensus       161 ~~l~G-~i~~l~G~sG~GKSTLln~l--------~-~~~~~~G~  194 (302)
T 2yv5_A          161 DYLEG-FICILAGPSGVGKSSILSRL--------T-GEELRTQE  194 (302)
T ss_dssp             HHTTT-CEEEEECSTTSSHHHHHHHH--------H-SCCCCCSC
T ss_pred             hhccC-cEEEEECCCCCCHHHHHHHH--------H-HhhCcccc
Confidence            44567 89999999999999999999        6 55566653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.03  E-value=0.00018  Score=74.48  Aligned_cols=101  Identities=18%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l  428 (623)
                      ..+.|.||.|+|||+|+++++-.... +.|   .|+.+.     .+++.+...++.. .    ...          ....
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~-----~l~~~l~~~~~~~-~----~~~----------~~~~  211 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP-----SFAIDVKNAISNG-S----VKE----------EIDA  211 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH-----HHHHHHHCCCC---------CC----------TTHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH-----HHHHHHHHHhccc-h----HHH----------HHHH
Confidence            67899999999999999999443220 122   111110     1122221111110 0    001          1112


Q ss_pred             cCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          429 VSRESLVLIDEIGSG-TDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       429 ~~~~~LlLLDEp~~g-lD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      ..++++|+|||++.. +++.....+...+++.....+..+|+||+.
T Consensus       212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~  257 (308)
T 2qgz_A          212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY  257 (308)
T ss_dssp             HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred             hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence            345789999999642 333333335444555543335677888886

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.03  E-value=0.00062  Score=75.11  Aligned_cols=40  Identities=15%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             EceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          329 VGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       329 ~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++...|.+..+  ++++.++.|   ++|+||||+|||||+|++
T Consensus        43 l~~lv~~l~~~~~~~~lg~~ip~G---vLL~GppGtGKTtLaraI   84 (499)
T 2dhr_A           43 LKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV   84 (499)
T ss_dssp             HHHHHHHHHCGGGTTTTSCCCCSE---EEEECSSSSSHHHHHHHH
T ss_pred             HHHHHHHhhchhhhhhccCCCCce---EEEECCCCCCHHHHHHHH
Confidence            3444444443333  677777766   799999999999999999

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.03  E-value=0.0028  Score=65.19  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             eeeeecCCcccc-ccccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          331 SLSKGISDFPVP-IDIKVECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       331 ~l~~~y~~~~v~-i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ++.+.|++...+ +++... + .+++++||||+||||++..++
T Consensus        79 ~l~~~~~~~~~~~i~~~~~-~-~vi~i~G~~G~GKTT~~~~la  119 (297)
T 1j8m_F           79 ELSNLFGGDKEPKVIPDKI-P-YVIMLVGVQGTGKTTTAGKLA  119 (297)
T ss_dssp             HHHHHTTCSCCCCCSCSSS-S-EEEEEECSSCSSTTHHHHHHH
T ss_pred             HHHHHhccccccccccCCC-C-eEEEEECCCCCCHHHHHHHHH
Confidence            344445443335 667665 6 899999999999999999993

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.97  E-value=0.00039  Score=64.93  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|+|||||||||+++.+
T Consensus         7 ~g-~~i~l~G~~GsGKSTl~~~l   28 (175)
T 1knq_A            7 DH-HIYVLMGVSGSGKSAVASEV   28 (175)
T ss_dssp             TS-EEEEEECSTTSCHHHHHHHH
T ss_pred             CC-cEEEEEcCCCCCHHHHHHHH
Confidence            46 89999999999999999999

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.97  E-value=0.00013  Score=73.89  Aligned_cols=41  Identities=15%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             EEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          328 TVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       328 ~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++++.+.|++..+  ++++.++.|   ++|+||||+|||||++++
T Consensus        51 ~l~~l~~~~~~~~~l~~~~~~~~~g---vll~Gp~GtGKTtl~~~i   93 (278)
T 1iy2_A           51 ELKEIVEFLKNPSRFHEMGARIPKG---VLLVGPPGVGKTHLARAV   93 (278)
T ss_dssp             HHHHHHHHHHCHHHHHHTTCCCCCE---EEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHcCCCCCCe---EEEECCCcChHHHHHHHH
Confidence            35566777765444  778888766   799999999999999999

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.97  E-value=0.0003  Score=69.27  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=22.8

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ...+| .+++|.|||||||||+++++
T Consensus        16 ~~~~g-~~i~i~G~~GsGKSTl~~~L   40 (230)
T 2vp4_A           16 EGTQP-FTVLIEGNIGSGKTTYLNHF   40 (230)
T ss_dssp             TTCCC-EEEEEECSTTSCHHHHHHTT
T ss_pred             CCCCc-eEEEEECCCCCCHHHHHHHH
Confidence            44678 89999999999999999999

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.89  E-value=0.0097  Score=61.62  Aligned_cols=123  Identities=14%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh---hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM---SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIV  423 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~---a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~  423 (623)
                      +++|  ++.|.||.|+|||||+-++......   .....|+-.++.  +..  ....++|....---.....++++..+.
T Consensus        26 l~~G--iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s--~~~--~ra~~lGvd~d~llv~~~~~~E~~~l~   99 (333)
T 3io5_A           26 MQSG--LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG--ITP--AYLRSMGVDPERVIHTPVQSLEQLRID   99 (333)
T ss_dssp             BCSE--EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC--CCH--HHHHHTTCCGGGEEEEECSBHHHHHHH
T ss_pred             CcCC--eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch--hhH--HHHHHhCCCHHHeEEEcCCCHHHHHHH
Confidence            4455  6899999999999997776222211   123356665542  222  235677764221111222344443233


Q ss_pred             HHHHh----cCCCcEEEEeCCCCCCC-------HH--------HHHHHHHH---HHHHHhcCCcEEEEEcCchh
Q 006974          424 DILEL----VSRESLVLIDEIGSGTD-------PS--------EGVALATS---ILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       424 ~~~~l----~~~~~LlLLDEp~~glD-------~~--------~~~~l~~a---ll~~l~~~~~~vii~TH~~~  475 (623)
                      .+..+    ..+|++|++|=.++-..       +.        ....+..+   +...+++.++++|+|-|-..
T Consensus       100 i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k  173 (333)
T 3io5_A          100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE  173 (333)
T ss_dssp             HHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred             HHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence            33222    35789999999987752       11        11122232   34456678999999999755

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.88  E-value=0.00037  Score=64.77  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|||||||||+++.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~L   24 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQL   24 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.88  E-value=0.0028  Score=63.04  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .-++|+||+|+||||+++.+
T Consensus        46 ~~vll~G~~GtGKT~la~~l   65 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAI   65 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHH
Confidence            34789999999999999999

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.86  E-value=0.00047  Score=72.32  Aligned_cols=44  Identities=14%  Similarity=0.055  Sum_probs=33.2

Q ss_pred             ceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhh
Q 006974          330 GSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLA  374 (623)
Q Consensus       330 ~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~  374 (623)
                      +++.+.|+...+  ++++...++ .+++|+|+||+||||+++.+ +.+
T Consensus        34 ~~~~~~~~~~~~~~~l~~~~~~~-~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           34 RHPRHQALSTQLLDAIMPYCGNT-LRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CCHHHHHHHHHHHHHHGGGCSCS-EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHHhCCcccCCC-EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            344444543333  677888888 89999999999999999999 444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.86  E-value=0.0004  Score=66.84  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=22.1

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+| .+++|+|||||||||+++.+
T Consensus        19 ~~~~-~~i~i~G~~GsGKstl~~~l   42 (201)
T 1rz3_A           19 TAGR-LVLGIDGLSRSGKTTLANQL   42 (201)
T ss_dssp             CSSS-EEEEEEECTTSSHHHHHHHH
T ss_pred             cCCC-eEEEEECCCCCCHHHHHHHH
Confidence            4567 89999999999999999999

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.85  E-value=0.00053  Score=66.39  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+| ++++|+||||+|||||++.+
T Consensus        17 ~~g-~~ivl~GPSGaGKsTL~~~L   39 (197)
T 3ney_A           17 QGR-KTLVLIGASGVGRSHIKNAL   39 (197)
T ss_dssp             CSC-CEEEEECCTTSSHHHHHHHH
T ss_pred             CCC-CEEEEECcCCCCHHHHHHHH
Confidence            467 89999999999999999999

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.85  E-value=0.00046  Score=68.07  Aligned_cols=45  Identities=16%  Similarity=0.062  Sum_probs=30.1

Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEcCc
Q 006974          428 LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRD--RVGLAVVTTHY  473 (623)
Q Consensus       428 l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~--~~~~vii~TH~  473 (623)
                      ...+++.+|+..+.+..+..+...+.. +.+.+..  ...++|+.||-
T Consensus       109 ~~~~~~~~l~v~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A          109 TSPGPHALLLVVPLGRYTEEEHKATEK-ILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             TTTCCSEEEEEEETTCCSSHHHHHHHH-HHHHHHHHHGGGEEEEEECG
T ss_pred             cCCCCcEEEEEeeCCCCCHHHHHHHHH-HHHHhhhhccceEEEEEeCC
Confidence            456788888888877787776666655 5544332  12578888884

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.82  E-value=0.0039  Score=67.32  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             eeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          331 SLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       331 ~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ++++.|+...-++++.  ++ ++++++||||+||||++..++
T Consensus        81 ~L~~~~~~~~~~i~l~--~~-~vi~i~G~~GsGKTT~~~~LA  119 (425)
T 2ffh_A           81 ALKEALGGEARLPVLK--DR-NLWFLVGLQGSGKTTTAAKLA  119 (425)
T ss_dssp             HHHHHTTSSCCCCCCC--SS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHhCCCcccccCC--CC-eEEEEECCCCCCHHHHHHHHH
Confidence            3445555433356666  66 899999999999999999993

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=96.76  E-value=0.0048  Score=51.75  Aligned_cols=60  Identities=12%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhch-hhHHHHHHHHHhHHHHHhHhhhHHhhc
Q 006974          556 EERRKLESQARTAASLHAEIMDLYREDSTSASI-SVYRYQFAVTSTLSKVDFDAIPNIDQC  615 (623)
Q Consensus       556 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (623)
                      +++++++.+..+|++++.++..++.++.++.+| .|+.+++++..++.+++++++.+|++-
T Consensus        19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW   79 (89)
T 2lw1_A           19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW   79 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999999876 589999999999999999999999874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.76  E-value=0.00048  Score=73.34  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++.+++| ++++|+||||+|||||++++
T Consensus       161 ~~~~~i~~~-~~i~l~G~~GsGKSTl~~~l  189 (377)
T 1svm_A          161 CMVYNIPKK-RYWLFKGPIDSGKTTLAAAL  189 (377)
T ss_dssp             HHHHCCTTC-CEEEEECSTTSSHHHHHHHH
T ss_pred             hcccccCCC-CEEEEECCCCCCHHHHHHHH
Confidence            778899999 89999999999999999999

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.76  E-value=0.0015  Score=74.71  Aligned_cols=119  Identities=16%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHH-HHHHHcCCc--------h-----hhh
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFD-LILADIGDH--------Q-----SLE  409 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d-~i~~~ig~~--------~-----~~~  409 (623)
                      +.+.++ +.++|+|+||+|||||++.+ +........|...  .+.....+.. ..-..+...        .     .++
T Consensus         4 ~~~~~~-~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~--~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            4 EGGAMI-RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE--EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             --CCCE-EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG--GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CccCCC-cEEEEECCCCChHHHHHHHHHHhcCCCCccceec--CCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            455677 89999999999999999999 3222111122110  0100000000 000001100        0     001


Q ss_pred             c-ccccccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974          410 Q-NLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL  476 (623)
Q Consensus       410 ~-~~stfS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l  476 (623)
                      . +...|+....   . .....+.-++++| ++.|+++.....+..     +...+..+|++.|.+++
T Consensus        81 TpG~~~f~~~~~---~-~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-----~~~~~ip~ilv~NKiD~  138 (665)
T 2dy1_A           81 APGYGDFVGEIR---G-ALEAADAALVAVS-AEAGVQVGTERAWTV-----AERLGLPRMVVVTKLDK  138 (665)
T ss_dssp             CCCSGGGHHHHH---H-HHHHCSEEEEEEE-TTTCSCHHHHHHHHH-----HHHTTCCEEEEEECGGG
T ss_pred             CCCccchHHHHH---H-HHhhcCcEEEEEc-CCcccchhHHHHHHH-----HHHccCCEEEEecCCch
Confidence            1 1112332211   1 1134677899999 999999887644332     33346778888888774

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.73  E-value=0.01  Score=73.76  Aligned_cols=121  Identities=18%  Similarity=0.243  Sum_probs=66.2

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHH-HHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~  423 (623)
                      +.+| ++++|.||+|+|||||+..++..... .....|+-.+. ..-..   ....+|..- .+ .....-+..+. ...
T Consensus       729 l~~G-~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee-s~~ql---~A~~lGvd~~~L-~i~~~~~leei~~~l  802 (1706)
T 3cmw_A          729 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-ALDPI---YARKLGVDIDNL-LCSQPDTGEQALEIC  802 (1706)
T ss_dssp             EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS-CCCHH---HHHHTTCCGGGC-EEECCSSHHHHHHHH
T ss_pred             cCCC-ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc-hHHHH---HHHHcCCChhhe-EEecCCcHHHHHHHH
Confidence            6788 89999999999999999999443322 11234544443 22122   134455321 11 01111233222 111


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCC-HH------------HHHHHHH---HHHHHHhcCCcEEEEEcCc
Q 006974          424 DILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD-~~------------~~~~l~~---all~~l~~~~~~vii~TH~  473 (623)
                      .-+....+|++|++|++..-.. ..            ....+..   .+...+++.+++||+++|-
T Consensus       803 ~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql  868 (1706)
T 3cmw_A          803 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI  868 (1706)
T ss_dssp             HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred             HHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            1111236899999999987662 10            1122333   2333456678999999884

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.73  E-value=0.0039  Score=62.80  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+ ..+.|+||.|+||||+++.+
T Consensus        49 ~~~-~~~ll~G~~GtGKT~la~~l   71 (285)
T 3h4m_A           49 EPP-KGILLYGPPGTGKTLLAKAV   71 (285)
T ss_dssp             CCC-SEEEEESSSSSSHHHHHHHH
T ss_pred             CCC-CeEEEECCCCCcHHHHHHHH
Confidence            344 67899999999999999999

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.68  E-value=0.0032  Score=64.08  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|+||+|+||||+.+.++
T Consensus        48 ~~~ll~G~~GtGKt~la~~la   68 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLA   68 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHH
Confidence            578999999999999999993

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.67  E-value=0.0019  Score=63.72  Aligned_cols=123  Identities=18%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhhhhhhh-h-hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTLGLASLMS-K-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL  426 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~-~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~  426 (623)
                      +| .+++++||-|+||||++-.+..-..-+ + ...+-|... .. + ..++..++|..-.. ..+...   ..-...+.
T Consensus        11 ~G-~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d-~r-~-~~~i~srlG~~~~~-~~~~~~---~~i~~~i~   82 (223)
T 2b8t_A           11 IG-WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID-TR-S-IRNIQSRTGTSLPS-VEVESA---PEILNYIM   82 (223)
T ss_dssp             CC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-GG-G-CSSCCCCCCCSSCC-EEESST---HHHHHHHH
T ss_pred             Cc-EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC-ch-H-HHHHHHhcCCCccc-cccCCH---HHHHHHHH
Confidence            46 799999999999999886662221111 1 122333432 12 1 12344455542110 111111   11112222


Q ss_pred             Hh--cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-----------hHHhhccccce
Q 006974          427 EL--VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTR  485 (623)
Q Consensus       427 ~l--~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-----------~l~~~~~~~~~  485 (623)
                      ..  ..++++|++||.-. +++.    +.+ .+..+.+.+..||++-|+.           ++..+||.+..
T Consensus        83 ~~~~~~~~dvViIDEaQ~-l~~~----~ve-~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~e  148 (223)
T 2b8t_A           83 SNSFNDETKVIGIDEVQF-FDDR----ICE-VANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITK  148 (223)
T ss_dssp             STTSCTTCCEEEECSGGG-SCTH----HHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEE
T ss_pred             HHhhCCCCCEEEEecCcc-CcHH----HHH-HHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEee
Confidence            22  24589999999964 5543    222 3344555688999999932           24456776554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.66  E-value=0.0084  Score=64.94  Aligned_cols=99  Identities=11%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHH---HcCCchhhhcccccccHHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILA---DIGDHQSLEQNLSTFSGHISRIVDI  425 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~---~ig~~~~~~~~~stfS~g~~rl~~~  425 (623)
                      .+++++||+|+||||++..++..  +++.|   .++.++. .+...++++-.   ..|..-........ ....-+-.+.
T Consensus       101 ~vIlivG~~G~GKTTt~~kLA~~--l~~~G~kVllv~~D~-~R~aa~eqL~~~~~~~gvpv~~~~~~~d-p~~i~~~al~  176 (443)
T 3dm5_A          101 TILLMVGIQGSGKTTTVAKLARY--FQKRGYKVGVVCSDT-WRPGAYHQLRQLLDRYHIEVFGNPQEKD-AIKLAKEGVD  176 (443)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCC-SSTHHHHHHHHHHGGGTCEEECCTTCCC-HHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCC-cchhHHHHHHHHHHhcCCcEEecCCCCC-HHHHHHHHHH
Confidence            79999999999999999888422  22233   3444443 23333443322   22221000000000 0111111111


Q ss_pred             HHhcCCCcEEEEeCCCCC-CCHHHHHHHHH
Q 006974          426 LELVSRESLVLIDEIGSG-TDPSEGVALAT  454 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~g-lD~~~~~~l~~  454 (623)
                      .....+.+++|+|.|+.. .|...-..+..
T Consensus       177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~  206 (443)
T 3dm5_A          177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQ  206 (443)
T ss_dssp             HHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred             HHHhCCCCEEEEECCCcccchHHHHHHHHH
Confidence            223356899999999854 45544444444

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.65  E-value=0.0024  Score=65.30  Aligned_cols=20  Identities=20%  Similarity=0.228  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|.||.|+|||++.+.+
T Consensus        37 ~~lLl~GppGtGKT~la~ai   56 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELV   56 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            56888999999999999999

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.62  E-value=0.001  Score=64.04  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.8

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+.++ .+++|+||+||||||+.+.+
T Consensus        17 ~~~~~-~~i~i~G~~GsGKSTl~~~L   41 (207)
T 2qt1_A           17 RGSKT-FIIGISGVTNSGKTTLAKNL   41 (207)
T ss_dssp             CSCCC-EEEEEEESTTSSHHHHHHHH
T ss_pred             cCCCC-eEEEEECCCCCCHHHHHHHH
Confidence            45667 89999999999999999999

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.60  E-value=0.0099  Score=64.44  Aligned_cols=118  Identities=14%  Similarity=0.057  Sum_probs=65.0

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh--hhceeecCCCCCCccHHHHHHHH-cCCch-hhhcccccccHHHH-
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS--KAGLYLPAKNHPRLPWFDLILAD-IGDHQ-SLEQNLSTFSGHIS-  420 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a--~~G~~vp~~~~~~l~~~d~i~~~-ig~~~-~~~~~~stfS~g~~-  420 (623)
                      -+.+| ++++|.|++|+|||||+..++......  ....|+..+. ..-.+..+++.. .|... .+.  -..|+.+.. 
T Consensus       196 Gl~~G-~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l~--~g~l~~~~~~  271 (444)
T 2q6t_A          196 TLGPG-SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRVR--LGQLTDRDFS  271 (444)
T ss_dssp             CCCTT-CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTCC--GGGCCHHHHH
T ss_pred             CcCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHh--CCCCCHHHHH
Confidence            36678 899999999999999999985544331  1223433322 212233344322 23221 111  135777766 


Q ss_pred             HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcC
Q 006974          421 RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       421 rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH  472 (623)
                      ++..+...+...++.+.|+|  ++++.+-.+.+   .....+.+..+||+-+
T Consensus       272 ~~~~a~~~l~~~~l~i~d~~--~~s~~~l~~~~---~~l~~~~~~~lIvID~  318 (444)
T 2q6t_A          272 RLVDVASRLSEAPIYIDDTP--DLTLMEVRARA---RRLVSQNQVGLIIIDY  318 (444)
T ss_dssp             HHHHHHHHHHTSCEEEECCT--TCBHHHHHHHH---HHHHHHSCCCEEEEEC
T ss_pred             HHHHHHHHHhcCCEEEECCC--CCCHHHHHHHH---HHHHHHcCCCEEEEcC
Confidence            67777665566778888876  44444433322   2222234555555543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.56  E-value=0.001  Score=63.85  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|||||||||+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~L   22 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLF   22 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999999

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.56  E-value=0.00036  Score=65.97  Aligned_cols=20  Identities=25%  Similarity=0.496  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+||||||||||++.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L   22 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRM   22 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999999

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.53  E-value=0.00027  Score=65.80  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+||||+++.+
T Consensus        44 ~~vll~G~~G~GKT~la~~~   63 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGL   63 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHH
Confidence            57799999999999999998

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.53  E-value=0.0027  Score=65.79  Aligned_cols=43  Identities=14%  Similarity=0.245  Sum_probs=28.0

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .++.+|++|| ...+++....+|.. +++.... ...+|++|++..
T Consensus       132 ~~~~vliiDE-~~~l~~~~~~~Ll~-~le~~~~-~~~~il~~~~~~  174 (353)
T 1sxj_D          132 PPYKIIILDE-ADSMTADAQSALRR-TMETYSG-VTRFCLICNYVT  174 (353)
T ss_dssp             CSCEEEEETT-GGGSCHHHHHHHHH-HHHHTTT-TEEEEEEESCGG
T ss_pred             CCceEEEEEC-CCccCHHHHHHHHH-HHHhcCC-CceEEEEeCchh
Confidence            4567999999 66788877777766 4443322 345666776643

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.51  E-value=0.018  Score=71.67  Aligned_cols=122  Identities=18%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHH-HHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~  423 (623)
                      +++| +++.|.||.|+|||||.-++..... ......|+..+..  ....  ....+|..- .+. ....-+.++- ...
T Consensus       380 l~~G-~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s--~~~~--~a~~lGvd~~~L~-i~~~~~~e~~l~~l  453 (1706)
T 3cmw_A          380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPI--YARKLGVDIDNLL-CSQPDTGEQALEIC  453 (1706)
T ss_dssp             EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC--CCHH--HHHHTTCCGGGCE-EECCSSHHHHHHHH
T ss_pred             cCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc--hHHH--HHHHcCCCHHHeE-EcCCCCHHHHHHHH
Confidence            5688 8999999999999999988833322 2233456655542  2211  245566431 111 1111123322 222


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCCHH--------------HH--HHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          424 DILELVSRESLVLIDEIGSGTDPS--------------EG--VALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD~~--------------~~--~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ..+....++++|++|.++.-....              .+  ..+...+...+++.++++|+++|-.
T Consensus       454 ~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~  520 (1706)
T 3cmw_A          454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR  520 (1706)
T ss_dssp             HHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred             HHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence            222234689999999998876411              11  1222224444467789999998863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.50  E-value=0.0014  Score=62.11  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=23.2

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      |+++....+ ..++|+|+.||||||+.+.+
T Consensus         2 ~~~~~~~~~-~~I~l~G~~GsGKSTv~~~L   30 (184)
T 1y63_A            2 PGSMEQPKG-INILITGTPGTGKTSMAEMI   30 (184)
T ss_dssp             ----CCCSS-CEEEEECSTTSSHHHHHHHH
T ss_pred             CcCcCCCCC-CEEEEECCCCCCHHHHHHHH
Confidence            456777778 89999999999999999998

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.49  E-value=0.00034  Score=65.09  Aligned_cols=20  Identities=35%  Similarity=0.356  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+||||+++.+
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~   63 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGL   63 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.49  E-value=0.0011  Score=70.11  Aligned_cols=30  Identities=30%  Similarity=0.402  Sum_probs=24.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      +.++++.+|  +.+|+||||+||||+|-+|.+
T Consensus        18 ~~~i~f~~g--l~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           18 NSRIKFEKG--IVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEECCSE--EEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEecCCC--eEEEECCCCCCHHHHHHHHHH
Confidence            345556555  899999999999999999965

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.48  E-value=0.00097  Score=65.81  Aligned_cols=122  Identities=21%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhhhhhhhhhc---eeecCCCCCCccHHHHHHHHcCCchhhhcccccccH---HHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTLGLASLMSKAG---LYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSG---HISRI  422 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~G---~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~---g~~rl  422 (623)
                      +|.-.+.+.|+-|+||||++-.+|....  +.|   .++-.+.......+. .+  -|+.. .....-.+.+   ++..+
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~--~~G~~V~v~d~D~q~~~~~~a-l~--~gl~~-~~~~~~~~~~~~~~e~~l   77 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL--RQGVRVMAGVVETHGRAETEA-LL--NGLPQ-QPLLRTEYRGMTLEEMDL   77 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCTTCHHHHH-HH--TTSCB-CCCEEEEETTEEEEECCH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHH--HCCCCEEEEEeCCCCChhHHH-Hh--cCccc-cCcceeecCCcccccccH
Confidence            4533578899999999999766643322  233   222222211222222 11  12221 0001111111   11112


Q ss_pred             HHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHh
Q 006974          423 VDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSC  478 (623)
Q Consensus       423 ~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~  478 (623)
                      ..++.  ..|+++|+|||+.--.+..+..+....+..+...+.-++.|+|-..+..
T Consensus        78 ~~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~es  131 (228)
T 2r8r_A           78 DALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLES  131 (228)
T ss_dssp             HHHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGG
T ss_pred             HHHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcccccccc
Confidence            22222  4799999999996434444444444344556666778889998654433

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.46  E-value=0.0012  Score=63.13  Aligned_cols=19  Identities=21%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+|+|||||||+.+.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L   21 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMF   21 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            6899999999999999999

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.40  E-value=0.02  Score=56.44  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|+||.|+||||+.+.++
T Consensus        40 ~~vll~G~~GtGKT~la~~la   60 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVA   60 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            568899999999999999993

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.37  E-value=0.0015  Score=63.35  Aligned_cols=20  Identities=35%  Similarity=0.617  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||+||||||+.+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L   25 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAM   25 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.35  E-value=0.013  Score=57.78  Aligned_cols=114  Identities=13%  Similarity=0.063  Sum_probs=58.0

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhhhhhhh--hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSK--AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHI  419 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~--~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~  419 (623)
                      |....-..| .+.+++||=|+||||.|-....-...+.  .-.+.|... .+.+  ..+.+++|..-... .+....-  
T Consensus        11 p~~~~~~~g-~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D-~Ryg--~~i~sr~G~~~~a~-~i~~~~d--   83 (234)
T 2orv_A           11 PGSPSKTRG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD-TRYS--SSFCTHDRNTMEAL-PACLLRD--   83 (234)
T ss_dssp             -------CC-EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC-CCC-------------CEEE-EESSGGG--
T ss_pred             CCCCCCCce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC-ccch--HHHHhhcCCeeEEE-ecCCHHH--
Confidence            333334457 8999999999999987655422222221  123446554 3444  56777776542111 1222211  


Q ss_pred             HHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          420 SRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       420 ~rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                           +...+.+.++|++||.---.+      +.+ +++.+.+.|..||++-++.
T Consensus        84 -----i~~~~~~~dvViIDEaQF~~~------v~e-l~~~l~~~gi~VI~~GL~~  126 (234)
T 2orv_A           84 -----VAQEALGVAVIGIDEGQFFPD------IVE-FCEAMANAGKTVIVAALDG  126 (234)
T ss_dssp             -----GHHHHTTCSEEEESSGGGCTT------HHH-HHHHHHHTTCEEEEECCSB
T ss_pred             -----HHHHhccCCEEEEEchhhhhh------HHH-HHHHHHhCCCEEEEEeccc
Confidence                 222336789999999877654      333 5555666788999999993

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.35  E-value=0.015  Score=56.73  Aligned_cols=46  Identities=15%  Similarity=0.062  Sum_probs=33.0

Q ss_pred             cCCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          429 VSRESLVLIDEIGS----GTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       429 ~~~~~LlLLDEp~~----glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ..+++++++|-.+.    .-+......+...+....++.++++++++|-.
T Consensus       133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~  182 (251)
T 2zts_A          133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP  182 (251)
T ss_dssp             HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred             hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence            46788999997642    22455555666667777777899999999864

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.34  E-value=0.021  Score=71.95  Aligned_cols=119  Identities=16%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCc-hhhhcccccccHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDH-QSLEQNLSTFSGHISRIVD  424 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~-~~~~~~~stfS~g~~rl~~  424 (623)
                      +++| +.+.|.||.|+|||||...++..... .....|+..++ ..-+.+   ...+|.. +.+  .++.---+++-+..
T Consensus      1424 i~~g-~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~-~~~~l~---a~~~G~dl~~l--~v~~~~~~E~~l~~ 1496 (2050)
T 3cmu_A         1424 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH-ALDPIY---ARKLGVDIDNL--LCSQPDTGEQALEI 1496 (2050)
T ss_dssp             EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS-CCCHHH---HHHTTCCTTTC--EEECCSSHHHHHHH
T ss_pred             ccCC-eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc-ccCHHH---HHHcCCCchhc--eeecCChHHHHHHH
Confidence            5678 89999999999999999999554332 22334665554 222332   4455522 111  11111112332222


Q ss_pred             HHH--hcCCCcEEEEeCCCCCCCHH--------------HH--HHHHHHHHHHHhcCCcEEEEEcC
Q 006974          425 ILE--LVSRESLVLIDEIGSGTDPS--------------EG--VALATSILQYLRDRVGLAVVTTH  472 (623)
Q Consensus       425 ~~~--l~~~~~LlLLDEp~~glD~~--------------~~--~~l~~all~~l~~~~~~vii~TH  472 (623)
                      +..  -...|++|++||...-+-..              ++  ..+...+..++.++++++|+|-.
T Consensus      1497 ~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A         1497 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp             HHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             HHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence            222  24789999999986444321              11  22333366777777777766643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.29  E-value=0.0021  Score=60.17  Aligned_cols=22  Identities=32%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|+|++||||||+.+.+
T Consensus         4 ~g-~~i~l~G~~GsGKST~~~~L   25 (179)
T 2pez_A            4 RG-CTVWLTGLSGAGKTTVSMAL   25 (179)
T ss_dssp             CC-EEEEEECCTTSSHHHHHHHH
T ss_pred             CC-cEEEEECCCCCCHHHHHHHH
Confidence            46 79999999999999999999

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.29  E-value=0.0012  Score=73.80  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+.+| .+++|+|+|||||||++|+|
T Consensus       365 ~~~~G-~iI~LiG~sGSGKSTLar~L  389 (552)
T 3cr8_A          365 RERQG-FTVFFTGLSGAGKSTLARAL  389 (552)
T ss_dssp             GGGSC-EEEEEEESSCHHHHHHHHHH
T ss_pred             ccccc-eEEEEECCCCChHHHHHHHH
Confidence            56788 89999999999999999999

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.22  E-value=0.00086  Score=74.31  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=26.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHhhh
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLGLA  374 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl~  374 (623)
                      +++|.+.+|  +.+|+|+||+||||+|.+|.++
T Consensus        53 ~~~l~f~~g--~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           53 QLELELGGG--FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             CEEEECCCS--EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eEEEecCCC--eEEEEcCCCCCHHHHHHHHHHH
Confidence            566777777  8999999999999999999554

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.17  E-value=0.021  Score=59.85  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+||||+.+.+
T Consensus       118 ~~vLl~GppGtGKT~la~ai  137 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCI  137 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.15  E-value=0.021  Score=62.78  Aligned_cols=28  Identities=11%  Similarity=0.064  Sum_probs=24.2

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLAS  375 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~  375 (623)
                      +.+| ++++|.|++|+|||||+-.++...
T Consensus       239 l~~G-~l~li~G~pG~GKT~lal~~a~~~  266 (503)
T 1q57_A          239 ARGG-EVIMVTSGSGMVMSTFVRQQALQW  266 (503)
T ss_dssp             CCTT-CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cCCC-eEEEEeecCCCCchHHHHHHHHHH
Confidence            6678 899999999999999998885443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.13  E-value=0.0022  Score=61.57  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.+| .+++|+||+||||||+.+.+
T Consensus         9 ~~~~-~~i~l~G~sGsGKsTl~~~L   32 (204)
T 2qor_A            9 MARI-PPLVVCGPSGVGKGTLIKKV   32 (204)
T ss_dssp             CCCC-CCEEEECCTTSCHHHHHHHH
T ss_pred             cccC-CEEEEECCCCCCHHHHHHHH
Confidence            4567 89999999999999999998

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.13  E-value=0.0025  Score=60.56  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+||||+|||||++.+
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l   25 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRF   25 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHH
Confidence            36899999999999999999

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.12  E-value=0.018  Score=62.52  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=53.2

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHH-cCCc-hhhhcccccccHHHH-H
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILAD-IGDH-QSLEQNLSTFSGHIS-R  421 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~-ig~~-~~~~~~~stfS~g~~-r  421 (623)
                      -+.+| ++++|.|+.|+|||||+-.++...... ....|+..+. ..-.+..+++.. .|.. +.+..+-..|+.++. +
T Consensus       193 Gl~~G-~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~  270 (444)
T 3bgw_A          193 GYKRR-NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGK  270 (444)
T ss_dssp             SBCSS-CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHH
T ss_pred             CCCCC-cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHH
Confidence            36788 899999999999999998885443332 2233443332 233344455432 2322 112111111444433 5


Q ss_pred             HHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          422 IVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                      +..+...+.+.+++|.|+|+  +++.+
T Consensus       271 l~~a~~~l~~~~l~i~d~~~--~s~~~  295 (444)
T 3bgw_A          271 LSMAIGEISNSNINIFDKAG--QSVNY  295 (444)
T ss_dssp             HHHHHHHHHTSCEEEECCSS--CBHHH
T ss_pred             HHHHHHHHhcCCEEEECCCC--CCHHH
Confidence            55554444455677777653  45544

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.09  E-value=0.038  Score=69.67  Aligned_cols=122  Identities=18%  Similarity=0.233  Sum_probs=67.0

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCch-hhhcccccccHHHH-HHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQ-SLEQNLSTFSGHIS-RIV  423 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~-~~~~~~stfS~g~~-rl~  423 (623)
                      +.+| +++.|.||.|+|||||...+...... .....|+-.+.  .+...  ....+|..- .+. -....+.++- ...
T Consensus       380 l~~G-~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~--s~~~~--~a~~lGvd~~~L~-I~~~~~~e~il~~~  453 (2050)
T 3cmu_A          380 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPI--YARKLGVDIDNLL-CSQPDTGEQALEIC  453 (2050)
T ss_dssp             EETT-SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS--CCCHH--HHHHTTCCTTTCE-EECCSSHHHHHHHH
T ss_pred             ccCC-cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC--CHHHH--HHHHcCCCHHHeE-EeCCCCHHHHHHHH
Confidence            6688 89999999999999999888433222 12234554443  22211  244555421 110 1112233332 222


Q ss_pred             HHHHhcCCCcEEEEeCCCCCCC-HH------------HHHHHHH---HHHHHHhcCCcEEEEEcCch
Q 006974          424 DILELVSRESLVLIDEIGSGTD-PS------------EGVALAT---SILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       424 ~~~~l~~~~~LlLLDEp~~glD-~~------------~~~~l~~---all~~l~~~~~~vii~TH~~  474 (623)
                      ..+....++++|++|....-.. +.            ....+..   .+...+++.+++||+++|-.
T Consensus       454 ~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~  520 (2050)
T 3cmu_A          454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR  520 (2050)
T ss_dssp             HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred             HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            2122246899999999987653 11            1122333   23333467789999999863

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.09  E-value=0.032  Score=52.70  Aligned_cols=19  Identities=37%  Similarity=0.583  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.|+||||+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l   58 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIAL   58 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            4899999999999999998

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.02  E-value=0.013  Score=59.66  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|+||.|+||||+.+.++
T Consensus        68 ~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999883

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.02  E-value=0.0035  Score=61.85  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=21.8

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +..| .+++|.||+||||||+++.+
T Consensus        23 ~~~g-~~i~i~G~~GsGKsT~~~~l   46 (229)
T 4eaq_A           23 NAMS-AFITFEGPEGSGKTTVINEV   46 (229)
T ss_dssp             CCCC-EEEEEECCTTSCHHHHHHHH
T ss_pred             cCCC-eEEEEEcCCCCCHHHHHHHH
Confidence            3378 89999999999999999999

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.99  E-value=0.027  Score=65.17  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .-++|+||.|+||||+.+.++
T Consensus       202 ~~vLL~G~pGtGKT~la~~la  222 (758)
T 3pxi_A          202 NNPVLIGEPGVGKTAIAEGLA  222 (758)
T ss_dssp             CEEEEESCTTTTTHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHH
Confidence            467999999999999999994

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.041  Score=59.51  Aligned_cols=99  Identities=18%  Similarity=0.255  Sum_probs=55.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HH--HHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-IS--RIVDILEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~--rl~~~~~l  428 (623)
                      +-+++.||.|+|||++.|+++--     .|..+..               +..    ....+.+.|+ ++  +..+..+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e-----~~~~~~~---------------v~~----s~l~sk~~Gese~~ir~~F~~A~  271 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT-----IGANFIF---------------SPA----SGIVDKYIGESARIIREMFAYAK  271 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH-----HTCEEEE---------------EEG----GGTCCSSSSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH-----hCCCEEE---------------Eeh----hhhccccchHHHHHHHHHHHHHH
Confidence            56899999999999999999321     2221110               000    1112233332 22  33333445


Q ss_pred             cCCCcEEEEeCCCC--------C--CCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGS--------G--TDPSEGVALATSILQYLRD----RVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~--------g--lD~~~~~~l~~all~~l~~----~~~~vii~TH~~~  475 (623)
                      ...|.+|++||.=+        +  .|......+. .++..+..    .+..||.+|+..+
T Consensus       272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~-~lL~~lDg~~~~~~vivI~ATNrp~  331 (437)
T 4b4t_L          272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLM-ELLTQMDGFDNLGQTKIIMATNRPD  331 (437)
T ss_dssp             HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHH-HHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred             hcCCceeeeecccccccccccCCCCcchHHHHHHH-HHHHHhhcccCCCCeEEEEecCCch
Confidence            67899999999832        1  2222222333 36666542    2357889999876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.032  Score=60.12  Aligned_cols=99  Identities=22%  Similarity=0.330  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHHHHH--HHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI--LEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl~~~--~~l  428 (623)
                      +-+++.||.|+|||++.|+++--     .|..+..               +...    ...+.+.|+ ++.+..+  .+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~-----~~~~~~~---------------v~~~----~l~~~~~Ge~e~~ir~lF~~A~  262 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS-----TKAAFIR---------------VNGS----EFVHKYLGEGPRMVRDVFRLAR  262 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH-----HTCEEEE---------------EEGG----GTCCSSCSHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH-----hCCCeEE---------------Eecc----hhhccccchhHHHHHHHHHHHH
Confidence            56899999999999999999321     2221110               0001    112233332 2333333  344


Q ss_pred             cCCCcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIG----------SGTDPSEGVALATSILQYLRD----RVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~----------~glD~~~~~~l~~all~~l~~----~~~~vii~TH~~~  475 (623)
                      ...|.++++||.-          .+-|......+.. ++..+..    .+..||++|++.+
T Consensus       263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~-lL~~ldg~~~~~~v~vI~aTN~~~  322 (428)
T 4b4t_K          263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE-LLTQMDGFDQSTNVKVIMATNRAD  322 (428)
T ss_dssp             HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH-HHHHHHHSCSSCSEEEEEEESCSS
T ss_pred             HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH-HHHHhhCCCCCCCEEEEEecCChh
Confidence            5789999999982          2233333333443 5555542    2457888999876

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.93  E-value=0.014  Score=52.89  Aligned_cols=20  Identities=20%  Similarity=0.285  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .-+.|+||.|+|||++.+.+
T Consensus        25 ~~vll~G~~GtGKt~lA~~i   44 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYL   44 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHH
Confidence            45799999999999999999

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.91  E-value=0.02  Score=51.64  Aligned_cols=88  Identities=9%  Similarity=0.123  Sum_probs=49.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR  431 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~  431 (623)
                      .-+.|+||.|+|||++.+.++-..     +.++.-.. ..++  +    ..                   ..-....+ +
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~-----~~~~~~~~-~~~~--~----~~-------------------~~~~~~~a-~   75 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNG-----TPWVSPAR-VEYL--I----DM-------------------PMELLQKA-E   75 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTT-----SCEECCSS-TTHH--H----HC-------------------HHHHHHHT-T
T ss_pred             CcEEEECCCCccHHHHHHHHHHhC-----CCeEEech-hhCC--h----Hh-------------------hhhHHHhC-C
Confidence            457899999999999999992211     11111111 1111  0    00                   01112222 3


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHY  473 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~  473 (623)
                      ..+|+|||+.. +++.....|.. +++.....+..+|++|+.
T Consensus        76 ~~~l~lDei~~-l~~~~q~~Ll~-~l~~~~~~~~~iI~~tn~  115 (143)
T 3co5_A           76 GGVLYVGDIAQ-YSRNIQTGITF-IIGKAERCRVRVIASCSY  115 (143)
T ss_dssp             TSEEEEEECTT-CCHHHHHHHHH-HHHHHTTTTCEEEEEEEE
T ss_pred             CCeEEEeChHH-CCHHHHHHHHH-HHHhCCCCCEEEEEecCC
Confidence            57999999874 56666666766 444333335667777764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.86  E-value=0.0033  Score=60.13  Aligned_cols=20  Identities=20%  Similarity=0.410  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|++||||||+.+.+
T Consensus        19 ~~I~l~G~~GsGKSTla~~L   38 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAI   38 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.86  E-value=0.0033  Score=66.72  Aligned_cols=46  Identities=13%  Similarity=0.211  Sum_probs=37.6

Q ss_pred             CcEEEceeeeecCCccc-----------------cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          325 SEMTVGSLSKGISDFPV-----------------PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v-----------------~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.+.++||++.|.....                 ++.+.+.+| +.++|+||+|+|||||++.|
T Consensus       132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rG-Qr~~IvG~sG~GKTtLl~~I  194 (422)
T 3ice_A          132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG-QRGLIVAPPKAGKTMLLQNI  194 (422)
T ss_dssp             TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTT-CEEEEECCSSSSHHHHHHHH
T ss_pred             CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCC-cEEEEecCCCCChhHHHHHH
Confidence            45678888888864321                 466788899 89999999999999999998

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.69  E-value=0.05  Score=56.22  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      +.++|.||.|+|||++.+.++
T Consensus        46 ~~iLL~GppGtGKT~la~ala   66 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVA   66 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHH
Confidence            578999999999999999993

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.67  E-value=0.0053  Score=57.52  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .+++|+|++||||||+.+.+
T Consensus         3 ~g-~~I~l~G~~GsGKST~~~~L   24 (186)
T 3cm0_A            3 VG-QAVIFLGPPGAGKGTQASRL   24 (186)
T ss_dssp             CE-EEEEEECCTTSCHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            45 78999999999999999998

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.64  E-value=0.0059  Score=58.89  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=23.4

Q ss_pred             ccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          345 IKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       345 l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.+.+| .+++|+|++||||||+.+.+
T Consensus        20 ~~~~~~-~~i~~~G~~GsGKsT~~~~l   45 (211)
T 1m7g_A           20 LRNQRG-LTIWLTGLSASGKSTLAVEL   45 (211)
T ss_dssp             HHTSSC-EEEEEECSTTSSHHHHHHHH
T ss_pred             ccCCCC-CEEEEECCCCCCHHHHHHHH
Confidence            456678 89999999999999999999

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.64  E-value=0.0043  Score=65.21  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|++|+|||||++.+
T Consensus        75 ~~v~lvG~pgaGKSTLln~L   94 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYF   94 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            79999999999999999999

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.62  E-value=0.0068  Score=57.06  Aligned_cols=23  Identities=39%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+| .+++|+|++||||||+.+.+
T Consensus        11 ~~~-~~i~l~G~~GsGKsT~~~~L   33 (186)
T 2yvu_A           11 EKG-IVVWLTGLPGSGKTTIATRL   33 (186)
T ss_dssp             SCC-EEEEEECCTTSSHHHHHHHH
T ss_pred             CCC-cEEEEEcCCCCCHHHHHHHH
Confidence            457 89999999999999999999

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.56  E-value=0.027  Score=58.02  Aligned_cols=20  Identities=25%  Similarity=0.444  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+||||+.+.+
T Consensus        56 ~~vll~G~~GtGKT~la~~i   75 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANII   75 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHH
Confidence            45899999999999999999

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.47  E-value=0.019  Score=60.52  Aligned_cols=87  Identities=23%  Similarity=0.151  Sum_probs=45.4

Q ss_pred             eEEEE--EcCCCCCHHHHHHHHhh-hhhh------hhhceeecCCCC-CCccHHHHHHHHcCCchhhhcccccccHHH--
Q 006974          352 RVVVI--TGPNTGGKTASMKTLGL-ASLM------SKAGLYLPAKNH-PRLPWFDLILADIGDHQSLEQNLSTFSGHI--  419 (623)
Q Consensus       352 ~~~~I--~GpNgsGKSTlLk~igl-~~~~------a~~G~~vp~~~~-~~l~~~d~i~~~ig~~~~~~~~~stfS~g~--  419 (623)
                      ..++|  +||.|+||||+++.+.- +.-.      .....++.+... ....++..++..+|....    ....+...  
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~  126 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ----VRGAPALDIL  126 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC----CTTCCHHHHH
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHH
Confidence            67888  99999999999999832 1110      001234443221 122345566666654311    11112221  


Q ss_pred             HHHHHHHHhcCCCcEEEEeCCCC
Q 006974          420 SRIVDILELVSRESLVLIDEIGS  442 (623)
Q Consensus       420 ~rl~~~~~l~~~~~LlLLDEp~~  442 (623)
                      ..+...+.....|-+|+|||.=.
T Consensus       127 ~~l~~~l~~~~~~~llvlDe~~~  149 (412)
T 1w5s_A          127 KALVDNLYVENHYLLVILDEFQS  149 (412)
T ss_dssp             HHHHHHHHHHTCEEEEEEESTHH
T ss_pred             HHHHHHHHhcCCeEEEEEeCHHH
Confidence            12333333335678999999743

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.47  E-value=0.016  Score=63.62  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .-+.|+||.|+|||++.+.+
T Consensus       239 ~~vLL~GppGtGKT~lArai  258 (489)
T 3hu3_A          239 RGILLYGPPGTGKTLIARAV  258 (489)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CcEEEECcCCCCHHHHHHHH
Confidence            56899999999999999999

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.45  E-value=0.007  Score=55.62  Aligned_cols=20  Identities=20%  Similarity=0.443  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L   21 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKL   21 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999998

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.05  Score=58.08  Aligned_cols=99  Identities=17%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHHHHH--HHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI--LEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl~~~--~~l  428 (623)
                      +-+.+.||.|+|||++.|+++--     .|..+..               +...    ...+.+.|+ ++.+..+  .+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e-----~~~~f~~---------------v~~s----~l~sk~vGese~~vr~lF~~Ar  238 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH-----TDCKFIR---------------VSGA----ELVQKYIGEGSRMVRELFVMAR  238 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH-----HTCEEEE---------------EEGG----GGSCSSTTHHHHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh-----hCCCceE---------------EEhH----HhhccccchHHHHHHHHHHHHH
Confidence            45799999999999999999221     2221110               0001    112233332 3333333  344


Q ss_pred             cCCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRD----RVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~gl----------D~~~~~~l~~all~~l~~----~~~~vii~TH~~~  475 (623)
                      ...|.+|++||.=+-.          |......+. .++..+..    .+..||.+|+..+
T Consensus       239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~-~lL~~lDg~~~~~~V~vIaATNrpd  298 (405)
T 4b4t_J          239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFETSKNIKIIMATNRLD  298 (405)
T ss_dssp             HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHH-HHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred             HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHH-HHHHhhhccCCCCCeEEEeccCChh
Confidence            5789999999974321          222223333 36665542    2447888999876

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.039  Score=59.58  Aligned_cols=20  Identities=25%  Similarity=0.386  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +-+.+.||.|+|||++.|++
T Consensus       216 rGvLLyGPPGTGKTllAkAi  235 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARAC  235 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHH
Confidence            56899999999999999999

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.36  E-value=0.0032  Score=66.46  Aligned_cols=40  Identities=15%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.+.+.+++..|+.+.+  +++|.       ++|+|+||+|||||++++
T Consensus        16 ~~v~~~~l~~~~~~k~~~~~~~~~-------I~vvG~~g~GKSTLln~L   57 (361)
T 2qag_A           16 GYVGFANLPNQVHRKSVKKGFEFT-------LMVVGESGLGKSTLINSL   57 (361)
T ss_dssp             -----CCHHHHHHTHHHHHCCEEC-------EEECCCTTSCHHHHHHHH
T ss_pred             ceEEeccchHHhCCeeecCCCCEE-------EEEEcCCCCCHHHHHHHH
Confidence            34667788888876655  44332       489999999999999997

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.051  Score=58.97  Aligned_cols=99  Identities=12%  Similarity=0.198  Sum_probs=54.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHH--HHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRI--VDILEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl--~~~~~l  428 (623)
                      +-++|.||.|+|||++.|+++--     .|..+..               +..    ..-.+.+.|+ ++.+  .+..+.
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e-----~~~~fi~---------------vs~----s~L~sk~vGesek~ir~lF~~Ar  299 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANR-----TDATFIR---------------VIG----SELVQKYVGEGARMVRELFEMAR  299 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHH-----HTCEEEE---------------EEG----GGGCCCSSSHHHHHHHHHHHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHhc-----cCCCeEE---------------EEh----HHhhcccCCHHHHHHHHHHHHHH
Confidence            56899999999999999999221     2221110               000    0112233332 3333  333445


Q ss_pred             cCCCcEEEEeCCCCCC----------CHHHHHHHHHHHHHHHhc----CCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGSGT----------DPSEGVALATSILQYLRD----RVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~gl----------D~~~~~~l~~all~~l~~----~~~~vii~TH~~~  475 (623)
                      ...|.+|++||.-+-.          +......+.. ++..+..    .+..||.+|+..+
T Consensus       300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~-lL~~lDg~~~~~~ViVIaATNrpd  359 (467)
T 4b4t_H          300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLE-LITQLDGFDPRGNIKVMFATNRPN  359 (467)
T ss_dssp             HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHH-HHHHHHSSCCTTTEEEEEECSCTT
T ss_pred             hcCCceEeecccccccccccCcCCCccHHHHHHHHH-HHHHhhccCCCCcEEEEeCCCCcc
Confidence            6789999999985332          2222223333 5555532    2346788998865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.26  E-value=0.0094  Score=58.58  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++ .+++|+|+|||||||+.+.+
T Consensus        14 ~~~-~~i~i~G~~gsGKst~~~~l   36 (236)
T 1q3t_A           14 MKT-IQIAIDGPASSGKSTVAKII   36 (236)
T ss_dssp             CCC-CEEEEECSSCSSHHHHHHHH
T ss_pred             cCC-cEEEEECCCCCCHHHHHHHH
Confidence            345 78999999999999999998

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.25  E-value=0.0091  Score=54.64  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999988

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.23  E-value=0.0092  Score=56.38  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||+|||||||++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l   26 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKL   26 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHH
Confidence            58999999999999999998

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.18  E-value=0.011  Score=57.13  Aligned_cols=20  Identities=25%  Similarity=0.421  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|++||||||+.+.+
T Consensus         5 ~~I~i~G~~GSGKST~~~~L   24 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAF   24 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.16  E-value=0.01  Score=54.47  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+||+|||||++.+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l   23 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNAL   23 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.16  E-value=0.0083  Score=57.37  Aligned_cols=20  Identities=45%  Similarity=0.795  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.++|+||+|+||||+++.+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L   21 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKL   21 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999988

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.12  E-value=0.061  Score=56.36  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .-++|+||.|+||||+.+.+
T Consensus        85 ~~iLL~GppGtGKT~la~al  104 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAV  104 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHH
Confidence            45789999999999999999

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.067  Score=57.54  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhcee-ecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHH--HHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLY-LPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRI--VDILE  427 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~-vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl--~~~~~  427 (623)
                      +-+.+.||.|+|||.+.|+++--     .|.. +.-.+                .    .-.+.+.|+ ++.+  .+..+
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e-----~~~~fi~v~~----------------s----~l~sk~vGesek~ir~lF~~A  271 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ-----TSATFLRIVG----------------S----ELIQKYLGDGPRLCRQIFKVA  271 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH-----HTCEEEEEES----------------G----GGCCSSSSHHHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH-----hCCCEEEEEH----------------H----HhhhccCchHHHHHHHHHHHH
Confidence            56899999999999999999221     2221 11111                1    112222232 3333  33344


Q ss_pred             hcCCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhc----CCcEEEEEcCchhH
Q 006974          428 LVSRESLVLIDEIGS----------GTDPSEGVALATSILQYLRD----RVGLAVVTTHYADL  476 (623)
Q Consensus       428 l~~~~~LlLLDEp~~----------glD~~~~~~l~~all~~l~~----~~~~vii~TH~~~l  476 (623)
                      ....|.+|++||.-+          +-+......+.. ++..+..    .+..||.+|++.+.
T Consensus       272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~-LL~~lDg~~~~~~ViVIaATNrpd~  333 (437)
T 4b4t_I          272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE-LLNQLDGFDDRGDVKVIMATNKIET  333 (437)
T ss_dssp             HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHH-HHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred             HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHH-HHHHhhCcCCCCCEEEEEeCCChhh
Confidence            557899999999732          122223333333 5555432    24578889998763

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.05  E-value=0.011  Score=59.00  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|||||||||+-+.+
T Consensus         2 ~li~I~G~~GSGKSTla~~L   21 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQI   21 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHH
Confidence            47899999999999999998

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.04  E-value=0.013  Score=55.05  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+ .+++|+|+.||||||+.+.+
T Consensus         4 ~~-~~I~l~G~~GsGKST~~~~L   25 (193)
T 2rhm_A            4 TP-ALIIVTGHPATGKTTLSQAL   25 (193)
T ss_dssp             CC-EEEEEEESTTSSHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            45 78999999999999999998

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.04  E-value=0.028  Score=62.07  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|+||.|+||||+++.++
T Consensus        78 ~~lLL~GppGtGKTtla~~la   98 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVA   98 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            688999999999999999993

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.02  E-value=0.046  Score=55.76  Aligned_cols=21  Identities=24%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|+||.|+||||+++.++
T Consensus        39 ~~vll~G~~GtGKT~la~~i~   59 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIA   59 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            568999999999999999993

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.01  E-value=0.066  Score=55.59  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+||||+++.+
T Consensus        39 ~~~ll~G~~G~GKT~la~~l   58 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLL   58 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.00  E-value=0.013  Score=54.44  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|++|+|||||++.+
T Consensus         5 ~ki~ivG~~g~GKStLl~~l   24 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNAL   24 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            67999999999999999999

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.00  E-value=0.051  Score=54.29  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..+.|+||.|+||||+.+.++
T Consensus        65 ~~vLl~G~~GtGKT~la~~ia   85 (272)
T 1d2n_A           65 VSVLLEGPPHSGKTALAAKIA   85 (272)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            678999999999999999994

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.96  E-value=0.013  Score=54.45  Aligned_cols=20  Identities=25%  Similarity=0.692  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         4 ~~i~l~G~~GsGKST~a~~L   23 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCL   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.94  E-value=0.083  Score=54.02  Aligned_cols=44  Identities=16%  Similarity=0.249  Sum_probs=27.2

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .++.+|++||.-.-........|.. +++... .+..+|++|++..
T Consensus       104 ~~~~vliiDEi~~l~~~~~~~~L~~-~le~~~-~~~~iI~~~n~~~  147 (324)
T 3u61_B          104 GRQKVIVIDEFDRSGLAESQRHLRS-FMEAYS-SNCSIIITANNID  147 (324)
T ss_dssp             SCEEEEEEESCCCGGGHHHHHHHHH-HHHHHG-GGCEEEEEESSGG
T ss_pred             CCCeEEEEECCcccCcHHHHHHHHH-HHHhCC-CCcEEEEEeCCcc
Confidence            3789999999965442444444544 344332 2457778887754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.93  E-value=0.078  Score=54.55  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+.|.||.|+|||++.+.+
T Consensus        52 ~~vLl~GppGtGKT~la~ai   71 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAV   71 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            56899999999999999999

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.92  E-value=0.011  Score=60.62  Aligned_cols=64  Identities=9%  Similarity=0.107  Sum_probs=39.9

Q ss_pred             ccHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHhcC-Cc--EEEEEcCchh-HHhhcccc
Q 006974          415 FSGHISRIVDILELVSRESLVLIDEIGSGTDPSE-GVALATSILQYLRDR-VG--LAVVTTHYAD-LSCLKDKD  483 (623)
Q Consensus       415 fS~g~~rl~~~~~l~~~~~LlLLDEp~~glD~~~-~~~l~~all~~l~~~-~~--~vii~TH~~~-l~~~~~~~  483 (623)
                      ++.+.+.+...+.....|.++++    |.+|... ...+.. .++.+.+. +.  .+.+++|+.+ +..+.+..
T Consensus       101 ~~~~~~~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~-~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i  169 (301)
T 1ega_A          101 WTPDDEMVLNKLREGKAPVILAV----NKVDNVQEKADLLP-HLQFLASQMNFLDIVPISAETGLNVDTIAAIV  169 (301)
T ss_dssp             CCHHHHHHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH-HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEE----ECcccCccHHHHHH-HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence            88887765555544578888888    7888876 555555 44445543 43  4556777754 65555443

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.90  E-value=0.014  Score=54.04  Aligned_cols=20  Identities=15%  Similarity=0.399  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||+||||||+.+.+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L   22 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREF   22 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHH
Confidence            57899999999999999998

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=94.90  E-value=0.03  Score=53.59  Aligned_cols=120  Identities=15%  Similarity=0.226  Sum_probs=61.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhhhhhhh-h-hceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTLGLASLMS-K-AGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDIL  426 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~igl~~~~a-~-~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~  426 (623)
                      +| .+.+++||-|+||||.+-.+..-..-+ + ...+.|... .+.+ ...+.+++|..-. ...++...       .+.
T Consensus         7 ~g-~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d-~r~~-~~~i~s~~g~~~~-a~~~~~~~-------~i~   75 (191)
T 1xx6_A            7 HG-WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID-NRYS-KEDVVSHMGEKEQ-AVAIKNSR-------EIL   75 (191)
T ss_dssp             CC-EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEE-CEEESSST-------HHH
T ss_pred             CC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-ccch-HHHHHhhcCCcee-eEeeCCHH-------HHH
Confidence            46 899999999999998876552222111 1 122334332 1111 1123333443211 01122221       223


Q ss_pred             HhcC-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch-----------hHHhhccccce
Q 006974          427 ELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA-----------DLSCLKDKDTR  485 (623)
Q Consensus       427 ~l~~-~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~-----------~l~~~~~~~~~  485 (623)
                      ..+. +.++|++||.-. +|+..-.     .++.+...+..||++.++.           +|..+||.+..
T Consensus        76 ~~~~~~~dvViIDEaqf-l~~~~v~-----~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~e  140 (191)
T 1xx6_A           76 KYFEEDTEVIAIDEVQF-FDDEIVE-----IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDK  140 (191)
T ss_dssp             HHCCTTCSEEEECSGGG-SCTHHHH-----HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEE
T ss_pred             HHHhccCCEEEEECCCC-CCHHHHH-----HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEe
Confidence            3333 479999999654 6655422     3444555588999998854           24456666544

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.81  E-value=0.12  Score=54.72  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+|||++.+.+
T Consensus       149 ~~vLL~GppGtGKT~la~ai  168 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAV  168 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.81  E-value=0.014  Score=54.20  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|++|+|||||++.+
T Consensus         8 ~~i~lvG~~gvGKStL~~~l   27 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNAL   27 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.80  E-value=0.015  Score=54.41  Aligned_cols=20  Identities=40%  Similarity=0.461  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.+
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L   23 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLA   23 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.78  E-value=0.039  Score=56.60  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..+.|+||.|+|||++.+.+.
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~   46 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALH   46 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHH
T ss_pred             CcEEEECCCCchHHHHHHHHH
Confidence            467899999999999999993

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.76  E-value=0.019  Score=59.98  Aligned_cols=20  Identities=25%  Similarity=0.159  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+.|+||.|+||||+++.+
T Consensus        46 ~~vll~G~~G~GKT~la~~l   65 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYI   65 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.76  E-value=0.034  Score=55.30  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..+.|+||.|+|||++.+.++
T Consensus        30 ~~vll~G~~GtGKt~la~~i~   50 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLH   50 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHHHHH
Confidence            467899999999999999994

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.75  E-value=0.088  Score=57.07  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|.||.|+||||+.+.+
T Consensus        51 ~~vLL~GppGtGKTtlAr~i   70 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVI   70 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHH
Confidence            35899999999999999999

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.75  E-value=0.012  Score=54.64  Aligned_cols=19  Identities=26%  Similarity=0.370  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||+||||||+.+.+
T Consensus         6 ~i~i~G~~GsGKsTla~~L   24 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARAL   24 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            5889999999999999999

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.72  E-value=0.012  Score=58.72  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=21.8

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ....+ .+++|+||+||||||+.+.+
T Consensus        28 ~~~~~-~~i~l~G~~GsGKSTla~~L   52 (253)
T 2p5t_B           28 SSKQP-IAILLGGQSGAGKTTIHRIK   52 (253)
T ss_dssp             CCSSC-EEEEEESCGGGTTHHHHHHH
T ss_pred             cccCC-eEEEEECCCCCCHHHHHHHH
Confidence            34456 79999999999999999998

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.65  E-value=0.016  Score=54.11  Aligned_cols=22  Identities=32%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+ .+++|+|+.||||||+.+.+
T Consensus        10 ~~-~~i~i~G~~GsGKst~~~~l   31 (180)
T 3iij_A           10 LL-PNILLTGTPGVGKTTLGKEL   31 (180)
T ss_dssp             CC-CCEEEECSTTSSHHHHHHHH
T ss_pred             cC-CeEEEEeCCCCCHHHHHHHH
Confidence            45 68899999999999999998

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.61  E-value=0.017  Score=58.96  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+ .+++|+||+||||||+.+.+
T Consensus        32 ~~-~livl~G~sGsGKSTla~~L   53 (287)
T 1gvn_B           32 SP-TAFLLGGQPGSGKTSLRSAI   53 (287)
T ss_dssp             SC-EEEEEECCTTSCTHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            45 79999999999999999998

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.54  E-value=0.018  Score=54.47  Aligned_cols=19  Identities=21%  Similarity=0.321  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+|+.||||||+.+.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L   20 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEI   20 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHH
Confidence            5899999999999999999

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.54  E-value=0.18  Score=55.90  Aligned_cols=117  Identities=16%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhh---hhhhh--hhceeecCCCCC---CccHHHHHHHHcCCchhhhcccccccH-HHHH
Q 006974          351 TRVVVITGPNTGGKTASMKTLGL---ASLMS--KAGLYLPAKNHP---RLPWFDLILADIGDHQSLEQNLSTFSG-HISR  421 (623)
Q Consensus       351 ~~~~~I~GpNgsGKSTlLk~igl---~~~~a--~~G~~vp~~~~~---~l~~~d~i~~~ig~~~~~~~~~stfS~-g~~r  421 (623)
                      ..+++|+|+-|.|||||.+.+.-   ..+..  ....++......   .......++..++...... .+..... ....
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~  230 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLL-NFPSVEHVTSVV  230 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCT-TCCCCTTCCHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccc-cccccccccHHH
Confidence            37999999999999999998852   11211  223456544321   1233456666666542110 1112111 1122


Q ss_pred             -HHHHHH-hcCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          422 -IVDILE-LVSR-ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       422 -l~~~~~-l~~~-~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                       ...+.. +..+ +-||+||-.-.   . +  .+.  +.   ...|+.||+||.+..+...
T Consensus       231 l~~~l~~~L~~~kr~LlVLDdv~~---~-~--~~~--~~---~~~gs~ilvTTR~~~v~~~  280 (549)
T 2a5y_B          231 LKRMICNALIDRPNTLFVFDDVVQ---E-E--TIR--WA---QELRLRCLVTTRDVEISNA  280 (549)
T ss_dssp             HHHHHHHHHTTSTTEEEEEEEECC---H-H--HHH--HH---HHTTCEEEEEESBGGGGGG
T ss_pred             HHHHHHHHHcCCCcEEEEEECCCC---c-h--hhc--cc---ccCCCEEEEEcCCHHHHHH
Confidence             223333 4564 78999997654   1 1  111  11   1158899999998766544

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=94.48  E-value=0.076  Score=51.77  Aligned_cols=122  Identities=19%  Similarity=0.219  Sum_probs=60.4

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhhhhhhhhh--ceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTLGLASLMSKA--GLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI  425 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~igl~~~~a~~--G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~  425 (623)
                      .+| .+.+++||=|+||||.+-.+..-..-+..  -.+.|... .+.+ -..+.+++|..-.. ..++...       .+
T Consensus        26 ~~G-~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d-~R~g-e~~i~s~~g~~~~a-~~~~~~~-------~~   94 (214)
T 2j9r_A           26 QNG-WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID-NRYS-EEDVVSHNGLKVKA-VPVSASK-------DI   94 (214)
T ss_dssp             CSC-EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSGG-------GG
T ss_pred             CCC-EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC-Ccch-HHHHHhhcCCeeEE-eecCCHH-------HH
Confidence            457 89999999999999987666332222211  22334432 2222 23456666543111 1112211       12


Q ss_pred             HHhcC-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-----------HHhhcccccee
Q 006974          426 LELVS-RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-----------LSCLKDKDTRF  486 (623)
Q Consensus       426 ~~l~~-~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-----------l~~~~~~~~~i  486 (623)
                      ...+. +.++|++||.-- +|+...    + +++.+...+..||++-++.+           |..+||.+..+
T Consensus        95 ~~~~~~~~dvViIDEaQF-~~~~~V----~-~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel  161 (214)
T 2j9r_A           95 FKHITEEMDVIAIDEVQF-FDGDIV----E-VVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKL  161 (214)
T ss_dssp             GGGCCSSCCEEEECCGGG-SCTTHH----H-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred             HHHHhcCCCEEEEECccc-CCHHHH----H-HHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEee
Confidence            22333 478999999866 555433    2 34445555889999999432           44566665543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.48  E-value=0.069  Score=57.77  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|.||.|+|||++.+.++
T Consensus       168 ~~vLL~GppGtGKT~lA~aia  188 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVA  188 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999993

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.47  E-value=0.021  Score=54.04  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         9 ~~I~i~G~~GsGKST~~~~L   28 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALL   28 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999999

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.40  E-value=0.02  Score=53.43  Aligned_cols=19  Identities=32%  Similarity=0.532  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|++|+|||||++.+
T Consensus         4 kv~ivG~~gvGKStLl~~l   22 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQL   22 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999999

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.32  E-value=0.037  Score=56.28  Aligned_cols=19  Identities=32%  Similarity=0.490  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.|+||||+.+.+
T Consensus        48 ~~ll~G~~G~GKT~la~~l   66 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALAL   66 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHH
Confidence            4899999999999999999

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.31  E-value=0.024  Score=53.76  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|+|+.||||||+.+.+
T Consensus         3 ~~-~~I~l~G~~GsGKsT~~~~L   24 (204)
T 2v54_A            3 RG-ALIVFEGLDKSGKTTQCMNI   24 (204)
T ss_dssp             CC-CEEEEECCTTSSHHHHHHHH
T ss_pred             CC-cEEEEEcCCCCCHHHHHHHH
Confidence            46 78999999999999999999

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.24  E-value=0.011  Score=56.62  Aligned_cols=19  Identities=26%  Similarity=0.532  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+|++||||||+++.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L   20 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKL   20 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            6899999999999999998

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.20  E-value=0.023  Score=56.27  Aligned_cols=20  Identities=35%  Similarity=0.586  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++|+||+||||||+.+.+
T Consensus        10 ~~i~i~G~~GsGKsTla~~l   29 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGL   29 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999999

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.18  E-value=0.026  Score=52.74  Aligned_cols=20  Identities=25%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L   23 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARI   23 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999988

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.16  E-value=0.025  Score=53.13  Aligned_cols=23  Identities=13%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++ .+++|+|+.||||||+.+.+
T Consensus         7 ~~~-~~I~l~G~~GsGKsT~~~~L   29 (196)
T 2c95_A            7 KKT-NIIFVVGGPGSGKGTQCEKI   29 (196)
T ss_dssp             TTS-CEEEEEECTTSSHHHHHHHH
T ss_pred             cCC-CEEEEECCCCCCHHHHHHHH
Confidence            345 79999999999999999998

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.13  E-value=0.025  Score=53.72  Aligned_cols=19  Identities=32%  Similarity=0.730  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+|++||||||+.+.+
T Consensus         4 ~i~i~G~~GsGKst~~~~l   22 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRV   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999999

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=94.11  E-value=0.26  Score=47.26  Aligned_cols=63  Identities=16%  Similarity=0.092  Sum_probs=38.6

Q ss_pred             HHHHHHhc--CCCcEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcC--CcEEEEEcCch--hHHhhccccceeeC
Q 006974          422 IVDILELV--SRESLVLIDEIGSG--TDPSEGVALATSILQYLRDR--VGLAVVTTHYA--DLSCLKDKDTRFEN  488 (623)
Q Consensus       422 l~~~~~l~--~~~~LlLLDEp~~g--lD~~~~~~l~~all~~l~~~--~~~vii~TH~~--~l~~~~~~~~~i~~  488 (623)
                      +..+...+  .+.+||||||++..  ++..+...+.    +.+.++  ...+|+|+++.  ++..+||.+..+..
T Consensus       109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~----~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~  179 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVI----SALNARPGHQTVIITGRGCHRDILDLADTVSELRP  179 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHH----HHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHH----HHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence            44455555  56799999999752  2222222333    334433  45789999984  37788887665543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.08  E-value=0.029  Score=53.28  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|+|+.||||||+.+.+
T Consensus         3 ~~-~~I~i~G~~GsGKsT~~~~L   24 (213)
T 2plr_A            3 KG-VLIAFEGIDGSGKSSQATLL   24 (213)
T ss_dssp             CC-EEEEEECCTTSSHHHHHHHH
T ss_pred             CC-eEEEEEcCCCCCHHHHHHHH
Confidence            35 68999999999999999999

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=94.03  E-value=0.024  Score=63.11  Aligned_cols=29  Identities=17%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++.+.+... .-++|.|..||||||+|+++
T Consensus       206 pv~~DL~k~-pHlLIaG~TGSGKS~~L~tl  234 (574)
T 2iut_A          206 PIITDLAKM-PHLLVAGTTGSGKSVGVNAM  234 (574)
T ss_dssp             EEEEEGGGS-CCEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEhhhC-CeeEEECCCCCCHHHHHHHH
Confidence            344445555 56899999999999999998

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.03  E-value=0.055  Score=57.69  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +..+ ..++|+|+||+|||||++.+
T Consensus        19 i~~~-~kvgIVG~pnvGKSTL~n~L   42 (396)
T 2ohf_A           19 FGTS-LKIGIVGLPNVGKSTFFNVL   42 (396)
T ss_dssp             SSSC-CCEEEECCSSSSHHHHHHHH
T ss_pred             ccCC-CEEEEECCCCCCHHHHHHHH
Confidence            4456 67899999999999999999

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.03  E-value=0.017  Score=60.65  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=24.7

Q ss_pred             cccccccCCceE--EEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRV--VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~--~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++.+.+| ++  ++|+||+|+||||+.+++
T Consensus        14 ~l~~~i~~g-~~~~i~l~G~~G~GKTTl~~~l   44 (359)
T 2ga8_A           14 LLDNRIEDN-YRVCVILVGSPGSGKSTIAEEL   44 (359)
T ss_dssp             HHHHTTTTC-SCEEEEEECCTTSSHHHHHHHH
T ss_pred             HHHHHhccC-CeeEEEEECCCCCcHHHHHHHH
Confidence            566677777 55  999999999999999999

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=93.99  E-value=0.028  Score=52.49  Aligned_cols=20  Identities=20%  Similarity=0.420  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L   21 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKV   21 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999998

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=93.92  E-value=0.024  Score=59.49  Aligned_cols=26  Identities=12%  Similarity=0.373  Sum_probs=20.6

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++.++    .++|+|++|+||||||+.+
T Consensus        29 ~i~~~lp----~I~vvG~~~sGKSSLln~l   54 (360)
T 3t34_A           29 TLWDSLP----AIAVVGGQSSGKSSVLESI   54 (360)
T ss_dssp             ---CCCC----EEEEECBTTSSHHHHHHHH
T ss_pred             cccccCC----EEEEECCCCCcHHHHHHHH
Confidence            4556654    7899999999999999999

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.91  E-value=0.029  Score=52.67  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|++||||||++..+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L   24 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKW   24 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999887

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.89  E-value=0.085  Score=56.96  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+++|+|++|+||||+...++
T Consensus       100 ~vI~ivG~~GvGKTTla~~La  120 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLA  120 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999984

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.80  E-value=0.024  Score=52.67  Aligned_cols=20  Identities=40%  Similarity=0.556  Sum_probs=15.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         6 ~~I~l~G~~GsGKST~a~~L   25 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTL   25 (183)
T ss_dssp             CEEEEECCC----CHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.80  E-value=0.033  Score=53.16  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+| .+++|+|+.||||||+.+.+
T Consensus         7 ~~~-~~I~l~G~~GsGKsT~~~~L   29 (215)
T 1nn5_A            7 RRG-ALIVLEGVDRAGKSTQSRKL   29 (215)
T ss_dssp             CCC-CEEEEEESTTSSHHHHHHHH
T ss_pred             cCC-cEEEEECCCCCCHHHHHHHH
Confidence            456 79999999999999999999

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.80  E-value=0.033  Score=53.04  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .+++|+|+.||||||+.+.+
T Consensus         9 ~~-~~I~l~G~~GsGKST~~~~L   30 (212)
T 2wwf_A            9 KG-KFIVFEGLDRSGKSTQSKLL   30 (212)
T ss_dssp             CS-CEEEEEESTTSSHHHHHHHH
T ss_pred             cC-CEEEEEcCCCCCHHHHHHHH
Confidence            46 79999999999999999998

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=93.79  E-value=0.073  Score=61.79  Aligned_cols=99  Identities=16%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHHHHH--HHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIVDI--LEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl~~~--~~l  428 (623)
                      +-++|.||.|+|||++.|+++--     .|..+.     .+... .             ..+.+.|+ ++++..+  .+.
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~e-----lg~~~~-----~v~~~-~-------------l~sk~~gese~~lr~lF~~A~  294 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVANE-----TGAFFF-----LINGP-E-------------IMSKLAGESESNLRKAFEEAE  294 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHTT-----TTCEEE-----EEEHH-H-------------HHSSCTTHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH-----hCCeEE-----EEEhH-H-------------hhcccchHHHHHHHHHHHHHH
Confidence            56899999999999999999211     222110     11111 1             12233333 3344444  344


Q ss_pred             cCCCcEEEEeCCCC-------CCCHHHHHHHHHHHHHHHh---c-CCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGS-------GTDPSEGVALATSILQYLR---D-RVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~-------glD~~~~~~l~~all~~l~---~-~~~~vii~TH~~~  475 (623)
                      ...|.+|++||.=+       +-+..+.. +...++..+.   . .+..||.+|...+
T Consensus       295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~r-iv~~LL~~mdg~~~~~~V~VIaaTN~~d  351 (806)
T 3cf2_A          295 KNAPAIIFIDELDAIAPKREKTHGEVERR-IVSQLLTLMDGLKQRAHVIVMAATNRPN  351 (806)
T ss_dssp             TSCSEEEEEESGGGTCCTTTTCCCTTHHH-HHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred             HcCCeEEEEehhcccccccCCCCChHHHH-HHHHHHHHHhcccccCCEEEEEecCChh
Confidence            57899999999722       11222222 2222443332   2 2456788888865

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.67  E-value=0.098  Score=61.34  Aligned_cols=22  Identities=36%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 006974          352 RVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      ..++|+||+|+|||++.+.++-
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~  610 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAA  610 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999943

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=93.66  E-value=0.035  Score=51.84  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.||||||+.+.+
T Consensus         6 ~~i~l~G~~GsGKst~a~~L   25 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQL   25 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            67899999999999999998

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.48  E-value=0.03  Score=52.75  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +..+ .+++|+|+.||||||+.+.+
T Consensus         9 ~~~~-~~I~l~G~~GsGKsT~a~~L   32 (199)
T 2bwj_A            9 LRKC-KIIFIIGGPGSGKGTQCEKL   32 (199)
T ss_dssp             HHHS-CEEEEEECTTSSHHHHHHHH
T ss_pred             cCCC-CEEEEECCCCCCHHHHHHHH
Confidence            3345 78999999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.45  E-value=0.04  Score=51.37  Aligned_cols=20  Identities=25%  Similarity=0.399  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L   26 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANI   26 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=93.38  E-value=0.066  Score=51.40  Aligned_cols=107  Identities=16%  Similarity=0.133  Sum_probs=60.6

Q ss_pred             CCceEEEEEcCCCCCHH-HHHHHHhhhhhhhhhceee-cCCCCCCccHHHHHHHHcCCchhh--hcccccccHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKT-ASMKTLGLASLMSKAGLYL-PAKNHPRLPWFDLILADIGDHQSL--EQNLSTFSGHISRIVD  424 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKS-TlLk~igl~~~~a~~G~~v-p~~~~~~l~~~d~i~~~ig~~~~~--~~~~stfS~g~~rl~~  424 (623)
                      .| ++..|+||-||||| -||+.++-...-.+...++ |.- ..+++  +.+.+++|..-..  ......|-    .   
T Consensus        19 ~g-~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~-D~R~~--~~i~S~~g~~~~A~~~~~~~d~~----~---   87 (195)
T 1w4r_A           19 RG-QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK-DTRYS--SSFCTHDRNTMEALPACLLRDVA----Q---   87 (195)
T ss_dssp             CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETT-CCCGG--GSCCHHHHHHSEEEEESSGGGGH----H---
T ss_pred             ce-EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcccc-Cccch--hhhhhccCCcccceecCCHHHHH----H---
Confidence            46 89999999999999 6777776554433334444 442 23333  2344444321100  01111111    1   


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhH
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADL  476 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l  476 (623)
                         ...+.++|++||.=-=  +.    +.+ +++.+.+.|..||++.++.++
T Consensus        88 ---~~~~~DvIlIDEaQFf--k~----~ve-~~~~L~~~gk~VI~~GL~~DF  129 (195)
T 1w4r_A           88 ---EALGVAVIGIDEGQFF--PD----IVE-FCEAMANAGKTVIVAALDGTF  129 (195)
T ss_dssp             ---HHHTCSEEEESSGGGC--TT----HHH-HHHHHHHTTCEEEEEEESBCT
T ss_pred             ---hccCCCEEEEEchhhh--HH----HHH-HHHHHHHCCCeEEEEeccccc
Confidence               1245789999997433  21    223 335566678999999998764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.37  E-value=0.041  Score=51.42  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+|+.||||||+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L   20 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKL   20 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.35  E-value=0.041  Score=52.80  Aligned_cols=19  Identities=21%  Similarity=0.389  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L   20 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQI   20 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=93.33  E-value=0.032  Score=52.87  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=23.3

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++.....  .++|+|++|+|||||++.+
T Consensus        18 ~~~~~~~~~--ki~lvG~~~vGKSsLi~~l   45 (198)
T 1f6b_A           18 FLGLYKKTG--KLVFLGLDNAGKTTLLHML   45 (198)
T ss_dssp             HHTCTTCCE--EEEEEEETTSSHHHHHHHH
T ss_pred             HhhccCCCc--EEEEECCCCCCHHHHHHHH
Confidence            556666555  5789999999999999999

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.30  E-value=0.046  Score=54.59  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         5 ~lIvl~G~pGSGKSTla~~L   24 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNL   24 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHH
Confidence            68999999999999999998

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.24  E-value=0.037  Score=50.90  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~L   22 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGREL   22 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=93.18  E-value=0.29  Score=47.70  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             cCCceEEEEEcCCCCCHHH-HHHHHhhhhhhh-hhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTA-SMKTLGLASLMS-KAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDI  425 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKST-lLk~igl~~~~a-~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~  425 (623)
                      ..| .+.+|+||-|||||| ||+.+--...-. +...+.|+.. .+.+ ...+.+++|..-.. ..+.... .      +
T Consensus        26 ~~G-~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D-~R~~-~~~I~Sr~G~~~~a-~~v~~~~-d------i   94 (219)
T 3e2i_A           26 HSG-WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID-DRYH-KEKVVSHNGNAIEA-INISKAS-E------I   94 (219)
T ss_dssp             -CC-EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------CBTTBCCEE-EEESSGG-G------G
T ss_pred             CCc-eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC-Ccch-hhhHHHhcCCceee-EEeCCHH-H------H
Confidence            357 899999999999999 777761111111 1223445543 2222 23466666643211 0111110 0      0


Q ss_pred             HH-hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          426 LE-LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       426 ~~-l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      .. +..+.++|++||.=- +|+.    +.+ .+..+.+.|..||+.-=+.
T Consensus        95 ~~~i~~~~dvV~IDEaQF-f~~~----~v~-~l~~la~~gi~Vi~~GLd~  138 (219)
T 3e2i_A           95 MTHDLTNVDVIGIDEVQF-FDDE----IVS-IVEKLSADGHRVIVAGLDM  138 (219)
T ss_dssp             GGSCCTTCSEEEECCGGG-SCTH----HHH-HHHHHHHTTCEEEEEEESB
T ss_pred             HHHHhcCCCEEEEechhc-CCHH----HHH-HHHHHHHCCCEEEEeeccc
Confidence            11 135789999999644 3332    233 3334445688888765554

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.15  E-value=0.047  Score=49.97  Aligned_cols=19  Identities=21%  Similarity=0.228  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.||||||+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L   20 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLL   20 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            5799999999999999998

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.11  E-value=0.39  Score=48.40  Aligned_cols=18  Identities=39%  Similarity=0.532  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|+||.|+||||+.+.+
T Consensus        45 ~ll~G~~G~GKt~la~~l   62 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCL   62 (323)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHH
Confidence            899999999999999999

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.06  E-value=0.049  Score=51.16  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=18.5

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++.....  .++|+|++|+|||||++.+
T Consensus        16 ~~~~~~~~~--ki~~vG~~~vGKSsli~~l   43 (190)
T 1m2o_B           16 SLGLWNKHG--KLLFLGLDNAGKTTLLHML   43 (190)
T ss_dssp             --------C--EEEEEESTTSSHHHHHHHH
T ss_pred             HhhccCCcc--EEEEECCCCCCHHHHHHHH
Confidence            455555444  6899999999999999998

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.05  E-value=0.048  Score=52.33  Aligned_cols=19  Identities=21%  Similarity=0.314  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L   20 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERI   20 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.02  E-value=0.045  Score=57.73  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 006974          350 ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       350 g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      |..+++|+|+||+|||||++.+
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L  199 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSL  199 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHH
Confidence            3356899999999999999999

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=92.94  E-value=0.055  Score=51.33  Aligned_cols=20  Identities=25%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L   35 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKL   35 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999988

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=92.91  E-value=0.11  Score=58.52  Aligned_cols=20  Identities=40%  Similarity=0.622  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.|+||||++..+
T Consensus       165 ~~~vi~G~pGTGKTt~l~~l  184 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKL  184 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHH
Confidence            69999999999999999887

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=92.82  E-value=0.053  Score=52.65  Aligned_cols=20  Identities=25%  Similarity=0.295  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~L   27 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRI   27 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=92.80  E-value=0.32  Score=50.27  Aligned_cols=117  Identities=11%  Similarity=0.046  Sum_probs=58.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhc-------eeecCCC-CCCccHHHHHHHHcCCchhhhcccccccHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTLG-LASLMSKAG-------LYLPAKN-HPRLPWFDLILADIGDHQSLEQNLSTFSGHI  419 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G-------~~vp~~~-~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~  419 (623)
                      .+ ..+.|+||.|+|||++.+.+. -+.-.+..+       .++-+.. ......+..++..+....     .+. ...+
T Consensus        44 ~~-~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~-----~~~-~~~~  116 (318)
T 3te6_A           44 QN-KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN-----LCG-DISL  116 (318)
T ss_dssp             CC-CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-------C-CCCH
T ss_pred             CC-CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC-----CCc-hHHH
Confidence            44 678999999999999999992 221111111       1222211 111224556666553221     110 0011


Q ss_pred             HHHHHHHH----hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC--CcEEEEEcCchhH
Q 006974          420 SRIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDR--VGLAVVTTHYADL  476 (623)
Q Consensus       420 ~rl~~~~~----l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~--~~~vii~TH~~~l  476 (623)
                      ..+.....    ....+-+++|||.-.=.   ....|.. ++++....  ..++|.++..+++
T Consensus       117 ~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~-l~~~~~~~~s~~~vI~i~n~~d~  175 (318)
T 3te6_A          117 EALNFYITNVPKAKKRKTLILIQNPENLL---SEKILQY-FEKWISSKNSKLSIICVGGHNVT  175 (318)
T ss_dssp             HHHHHHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHH-HHHHHHCSSCCEEEEEECCSSCC
T ss_pred             HHHHHHHHHhhhccCCceEEEEecHHHhh---cchHHHH-HHhcccccCCcEEEEEEecCccc
Confidence            22322222    23566799999986655   2333333 55533222  3466777877653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=92.79  E-value=0.051  Score=54.45  Aligned_cols=20  Identities=30%  Similarity=0.486  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|++|+|||||++.+
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l   23 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNAL   23 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=92.72  E-value=0.059  Score=57.06  Aligned_cols=20  Identities=25%  Similarity=0.210  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||+||||||+++.+
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~   55 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKML   55 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHH
Confidence            46799999999999999998

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=92.63  E-value=0.056  Score=58.36  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+||+|||||++.+
T Consensus       181 ~kvaivG~~gvGKSTLln~l  200 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAI  200 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.62  E-value=0.061  Score=51.42  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++|||+-||||||+.+.+
T Consensus        13 ~iIgltG~~GSGKSTva~~L   32 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEIL   32 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=92.60  E-value=0.23  Score=50.59  Aligned_cols=22  Identities=14%  Similarity=0.288  Sum_probs=20.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .+++|+||-|+|||||++.+
T Consensus        30 ~~-~~v~i~G~~G~GKT~Ll~~~   51 (350)
T 2qen_A           30 NY-PLTLLLGIRRVGKSSLLRAF   51 (350)
T ss_dssp             HC-SEEEEECCTTSSHHHHHHHH
T ss_pred             cC-CeEEEECCCcCCHHHHHHHH
Confidence            35 79999999999999999998

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.59  E-value=0.059  Score=52.34  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+||.||||||+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L   20 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLV   20 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=92.53  E-value=0.076  Score=56.13  Aligned_cols=19  Identities=32%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|++|+|||||++.+
T Consensus         3 ~v~IVG~pnvGKSTL~n~L   21 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNAL   21 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999999

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=92.53  E-value=0.067  Score=51.60  Aligned_cols=20  Identities=30%  Similarity=0.471  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.||||||+.+.+
T Consensus         5 ~~I~l~G~~GsGKsT~a~~L   24 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNL   24 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=92.49  E-value=0.071  Score=50.56  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus        21 ~~I~l~G~~GsGKST~a~~L   40 (201)
T 2cdn_A           21 MRVLLLGPPGAGKGTQAVKL   40 (201)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999998

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=92.41  E-value=0.037  Score=56.51  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=16.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.+
T Consensus         6 ~iIgItG~sGSGKSTva~~L   25 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTF   25 (290)
T ss_dssp             CEEEEESCC---CCTHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.41  E-value=0.068  Score=49.80  Aligned_cols=20  Identities=35%  Similarity=0.694  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        49 ~~i~vvG~~g~GKSsll~~l   68 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLL   68 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.40  E-value=0.059  Score=52.08  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~L   25 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELI   25 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=92.33  E-value=0.067  Score=52.95  Aligned_cols=20  Identities=15%  Similarity=0.376  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+-+.+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L   42 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKI   42 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999988

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.31  E-value=0.072  Score=48.91  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+|+-||||||+-+.+
T Consensus         8 ~~i~l~G~~GsGKSTva~~L   27 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQEL   27 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            58999999999999999998

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.30  E-value=0.055  Score=50.45  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+-+.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~L   22 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRL   22 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.29  E-value=0.069  Score=49.61  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|++|+|||||++.+
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l   36 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQL   36 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.29  E-value=0.084  Score=47.53  Aligned_cols=19  Identities=21%  Similarity=0.433  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         7 ~i~v~G~~~~GKssl~~~l   25 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRY   25 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5789999999999999998

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.22  E-value=0.056  Score=49.72  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|++|+|||||++.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l   38 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRL   38 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=92.15  E-value=0.068  Score=54.12  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 006974          351 TRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       351 ~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..+++|+|+.||||||+.+.+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999994

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.06  E-value=0.077  Score=53.66  Aligned_cols=20  Identities=15%  Similarity=0.399  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|++||||||+.+.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L   22 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREF   22 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=92.02  E-value=0.5  Score=52.40  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHH
Q 006974          351 TRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       351 ~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+||-|.|||||.+.+
T Consensus       147 ~~~v~I~G~~GiGKTtLa~~~  167 (591)
T 1z6t_A          147 PGWVTIHGMAGCGKSVLAAEA  167 (591)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHH
Confidence            489999999999999999988

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=91.89  E-value=0.093  Score=46.93  Aligned_cols=19  Identities=37%  Similarity=0.485  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         3 ki~v~G~~~~GKSsli~~l   21 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRL   21 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999998

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.81  E-value=0.1  Score=47.56  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        10 ~~i~v~G~~~~GKssl~~~l   29 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRF   29 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            35799999999999999999

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.81  E-value=0.1  Score=47.09  Aligned_cols=19  Identities=32%  Similarity=0.351  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         8 ~i~v~G~~~~GKssli~~l   26 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRY   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5799999999999999998

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=91.80  E-value=0.083  Score=50.74  Aligned_cols=19  Identities=16%  Similarity=0.406  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L   20 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFI   20 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.77  E-value=0.082  Score=47.21  Aligned_cols=19  Identities=32%  Similarity=0.394  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssl~~~l   23 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQL   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999998

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.75  E-value=0.12  Score=46.68  Aligned_cols=19  Identities=21%  Similarity=0.298  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l   23 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRF   23 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999999

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=91.74  E-value=0.093  Score=49.63  Aligned_cols=21  Identities=38%  Similarity=0.658  Sum_probs=18.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 006974          350 ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       350 g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      | .+.+|+||.|+||||++-.+
T Consensus         3 g-~i~vi~G~~gsGKTT~ll~~   23 (184)
T 2orw_A            3 G-KLTVITGPMYSGKTTELLSF   23 (184)
T ss_dssp             C-CEEEEEESTTSSHHHHHHHH
T ss_pred             c-EEEEEECCCCCCHHHHHHHH
Confidence            5 78999999999999998444

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=91.65  E-value=0.1  Score=51.44  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++ .+++|+||.||||||+.+.+
T Consensus        28 ~~-~~I~l~G~~GsGKsT~a~~L   49 (243)
T 3tlx_A           28 PD-GRYIFLGAPGSGKGTQSLNL   49 (243)
T ss_dssp             CC-EEEEEECCTTSSHHHHHHHH
T ss_pred             CC-cEEEEECCCCCCHHHHHHHH
Confidence            45 68999999999999999998

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=91.64  E-value=0.089  Score=47.11  Aligned_cols=19  Identities=32%  Similarity=0.373  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l   23 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999998

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.58  E-value=0.11  Score=50.53  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|.||.||||||+++.+
T Consensus         5 ~g-~~i~~eG~~gsGKsT~~~~l   26 (213)
T 4edh_A            5 TG-LFVTLEGPEGAGKSTNRDYL   26 (213)
T ss_dssp             CC-EEEEEECSTTSSHHHHHHHH
T ss_pred             Cc-eEEEEEcCCCCCHHHHHHHH
Confidence            47 79999999999999999998

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.57  E-value=0.092  Score=47.26  Aligned_cols=19  Identities=21%  Similarity=0.352  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l   23 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRF   23 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=91.57  E-value=0.092  Score=47.05  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         5 ~~i~v~G~~~~GKssl~~~l   24 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQF   24 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35799999999999999998

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=91.56  E-value=0.11  Score=47.32  Aligned_cols=20  Identities=35%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.|+|||||++.+
T Consensus         9 ~~i~v~G~~~~GKssl~~~l   28 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAI   28 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=91.56  E-value=0.092  Score=47.36  Aligned_cols=19  Identities=26%  Similarity=0.324  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         8 ~i~v~G~~~~GKSsli~~l   26 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRF   26 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5799999999999999998

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=91.54  E-value=0.52  Score=48.62  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+.++||.|.||||+.+.+
T Consensus        25 ~a~L~~G~~G~GKt~~a~~l   44 (334)
T 1a5t_A           25 HALLIQALPGMGDDALIYAL   44 (334)
T ss_dssp             SEEEEECCTTSCHHHHHHHH
T ss_pred             eeEEEECCCCchHHHHHHHH
Confidence            57899999999999999998

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.47  E-value=0.092  Score=47.33  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         4 ki~~vG~~~~GKSsli~~l   22 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIF   22 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999999

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.45  E-value=0.095  Score=47.86  Aligned_cols=20  Identities=35%  Similarity=0.396  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         9 ~~i~v~G~~~~GKSsli~~l   28 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRY   28 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=91.37  E-value=0.098  Score=47.69  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         9 ~i~v~G~~~~GKSsli~~l   27 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRY   27 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999998

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.36  E-value=0.1  Score=46.95  Aligned_cols=19  Identities=26%  Similarity=0.345  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 ki~v~G~~~~GKssli~~l   23 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.34  E-value=0.1  Score=47.22  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         4 ki~ivG~~~~GKSsli~~l   22 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTF   22 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.32  E-value=0.097  Score=47.20  Aligned_cols=19  Identities=16%  Similarity=0.359  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 ~i~v~G~~~~GKssli~~l   23 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRF   23 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5799999999999999998

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=91.30  E-value=1.7  Score=46.63  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 006974          351 TRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       351 ~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..+++++|++|+||||+.-.++
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999987774

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=91.26  E-value=0.49  Score=48.42  Aligned_cols=20  Identities=15%  Similarity=0.135  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+++.||.|.||||+.+.+
T Consensus        19 ~~~Lf~Gp~G~GKtt~a~~l   38 (305)
T 2gno_A           19 ISILINGEDLSYPREVSLEL   38 (305)
T ss_dssp             EEEEEECSSSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.23  E-value=0.1  Score=47.35  Aligned_cols=19  Identities=32%  Similarity=0.323  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         6 ki~i~G~~~vGKSsl~~~l   24 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLF   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHH
Confidence            5899999999999999998

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=91.17  E-value=0.1  Score=48.49  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        24 ~~i~v~G~~~~GKSsli~~l   43 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSL   43 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.16  E-value=0.091  Score=51.66  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=18.2

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+| .+++|.||.||||||+.+.+
T Consensus        23 ~~g-~~I~~eG~~GsGKsT~~~~l   45 (227)
T 3v9p_A           23 ARG-KFITFEGIDGAGKTTHLQWF   45 (227)
T ss_dssp             CCC-CEEEEECCC---CHHHHHHH
T ss_pred             cCC-eEEEEECCCCCCHHHHHHHH
Confidence            467 89999999999999999998

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.15  E-value=0.11  Score=47.03  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         8 ~~i~v~G~~~~GKssl~~~l   27 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRL   27 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=91.11  E-value=0.094  Score=49.20  Aligned_cols=20  Identities=30%  Similarity=0.390  Sum_probs=4.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        21 ~~i~v~G~~~~GKssli~~l   40 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMF   40 (208)
T ss_dssp             EEEEEC--------------
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.04  E-value=0.11  Score=48.09  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        24 ~~i~v~G~~~~GKSsli~~l   43 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNAL   43 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=90.97  E-value=0.12  Score=54.00  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||+||||||+.+.+
T Consensus         8 ~lI~I~GptgSGKTtla~~L   27 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEV   27 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHH
Confidence            58999999999999999988

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=90.94  E-value=0.12  Score=52.19  Aligned_cols=20  Identities=20%  Similarity=0.405  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|++|+|||||++.+
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L   23 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLI   23 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=90.88  E-value=0.14  Score=49.85  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+... ++++|+||.||||||.-+.|
T Consensus        25 ~~~k~-kiI~llGpPGsGKgTqa~~L   49 (217)
T 3umf_A           25 KLAKA-KVIFVLGGPGSGKGTQCEKL   49 (217)
T ss_dssp             CTTSC-EEEEEECCTTCCHHHHHHHH
T ss_pred             hccCC-cEEEEECCCCCCHHHHHHHH
Confidence            34455 89999999999999999888

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.85  E-value=0.11  Score=47.99  Aligned_cols=19  Identities=21%  Similarity=0.450  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         3 ki~v~G~~~~GKSsli~~l   21 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRL   21 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=90.85  E-value=0.16  Score=54.92  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.|+|||||++.+
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l   43 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRI   43 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHH
Confidence            57999999999999999999

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.80  E-value=0.13  Score=50.95  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|.|+.||||||+++.+
T Consensus        26 ~~-~~i~~eG~~GsGKsT~~~~l   47 (236)
T 3lv8_A           26 NA-KFIVIEGLEGAGKSTAIQVV   47 (236)
T ss_dssp             CC-CEEEEEESTTSCHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            46 79999999999999999998

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=90.77  E-value=0.12  Score=47.55  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         6 ki~v~G~~~~GKSsli~~l   24 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQL   24 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999999

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=90.76  E-value=0.12  Score=47.20  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        10 ~~i~v~G~~~~GKssli~~l   29 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQF   29 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=90.75  E-value=0.12  Score=46.38  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         8 ~i~v~G~~~~GKssli~~l   26 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRF   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=90.66  E-value=0.15  Score=54.74  Aligned_cols=20  Identities=30%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|++||||||+.+.+
T Consensus       259 ~lIil~G~pGSGKSTla~~L  278 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEH  278 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            79999999999999999998

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=90.65  E-value=0.12  Score=46.97  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus        16 ~i~v~G~~~~GKssli~~l   34 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRF   34 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.55  E-value=0.11  Score=48.18  Aligned_cols=20  Identities=35%  Similarity=0.531  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        15 ~ki~vvG~~~~GKssL~~~l   34 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWI   34 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35799999999999999988

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=90.53  E-value=0.14  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|.|+.||||||.++.+
T Consensus         2 ~g-~~i~~eG~~gsGKsT~~~~l   23 (213)
T 4tmk_A            2 RS-KYIVIEGLEGAGKTTARNVV   23 (213)
T ss_dssp             CC-CEEEEEECTTSCHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            36 78999999999999999998

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=90.52  E-value=0.15  Score=47.14  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         8 ~ki~v~G~~~~GKSsli~~l   27 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRL   27 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999999

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=90.52  E-value=0.64  Score=48.47  Aligned_cols=21  Identities=38%  Similarity=0.518  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+++|+|+.|+||||++..++
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~  100 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALG  100 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999983

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=90.51  E-value=0.13  Score=47.37  Aligned_cols=20  Identities=20%  Similarity=0.189  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        12 ~ki~v~G~~~~GKSsli~~l   31 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQY   31 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35799999999999999998

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.50  E-value=0.13  Score=46.08  Aligned_cols=19  Identities=26%  Similarity=0.508  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         2 ki~~~G~~~~GKssl~~~l   20 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKL   20 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999998

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=90.49  E-value=0.13  Score=46.68  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        16 ~~i~v~G~~~~GKSsli~~l   35 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQF   35 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.48  E-value=0.13  Score=47.06  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        19 ~ki~v~G~~~~GKSsli~~l   38 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQF   38 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=90.48  E-value=0.13  Score=47.84  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l   45 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRF   45 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            35799999999999999998

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=90.43  E-value=0.15  Score=52.60  Aligned_cols=20  Identities=40%  Similarity=0.629  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||+|||||||.+.+
T Consensus         4 ~~i~i~GptgsGKt~la~~L   23 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVML   23 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHH
Confidence            68999999999999999988

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.41  E-value=0.13  Score=47.89  Aligned_cols=20  Identities=30%  Similarity=0.308  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~   40 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRY   40 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=90.40  E-value=0.14  Score=49.31  Aligned_cols=20  Identities=15%  Similarity=0.355  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.||||||+.+.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~L   25 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFI   25 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=90.31  E-value=0.14  Score=52.94  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||+||||||+-+.+
T Consensus         6 ~~i~i~GptGsGKTtla~~L   25 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMAL   25 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999988

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=90.28  E-value=0.14  Score=47.22  Aligned_cols=20  Identities=15%  Similarity=0.298  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        11 ~ki~v~G~~~~GKSsli~~l   30 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQF   30 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            35799999999999999998

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.25  E-value=0.15  Score=48.54  Aligned_cols=20  Identities=35%  Similarity=0.694  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l   32 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLL   32 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=90.21  E-value=0.14  Score=46.57  Aligned_cols=19  Identities=26%  Similarity=0.461  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         8 ki~v~G~~~~GKssl~~~l   26 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCF   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5789999999999999998

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=90.20  E-value=1.4  Score=48.34  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+++|+|++|+||||++..++
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999984

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.20  E-value=0.15  Score=46.94  Aligned_cols=20  Identities=25%  Similarity=0.295  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l   38 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQF   38 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46799999999999999998

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=90.11  E-value=0.14  Score=47.35  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         8 ~ki~v~G~~~vGKSsli~~l   27 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVF   27 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35789999999999999998

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.09  E-value=0.16  Score=47.02  Aligned_cols=20  Identities=30%  Similarity=0.345  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++++|+.|+|||||++.+
T Consensus        22 ~ki~vvG~~~~GKSsli~~l   41 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQL   41 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            36789999999999999999

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.09  E-value=0.13  Score=49.30  Aligned_cols=20  Identities=25%  Similarity=0.511  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.||||||+.+.+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l   23 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRV   23 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999988

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=90.08  E-value=0.16  Score=48.57  Aligned_cols=20  Identities=30%  Similarity=0.290  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|+.|+|||||++.+
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l   50 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERT   50 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            68999999999999999988

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=90.03  E-value=0.15  Score=47.75  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        15 ~ki~v~G~~~~GKSsli~~l   34 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQF   34 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=90.03  E-value=0.9  Score=52.26  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 006974          353 VVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .++|+||.|+|||++.+.++
T Consensus       490 ~~ll~G~~GtGKT~la~~la  509 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLS  509 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            68999999999999999994

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=90.03  E-value=0.15  Score=46.57  Aligned_cols=19  Identities=21%  Similarity=0.347  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus        14 ki~v~G~~~~GKSsli~~l   32 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRF   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHH
Confidence            5799999999999999998

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.01  E-value=0.15  Score=46.46  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        11 ~~i~v~G~~~~GKssli~~l   30 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRF   30 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            36799999999999999998

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=89.99  E-value=0.16  Score=52.24  Aligned_cols=20  Identities=35%  Similarity=0.627  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||+|||||||...+
T Consensus        11 ~~i~i~GptgsGKt~la~~L   30 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIEL   30 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHH
Confidence            68999999999999999988

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=89.99  E-value=0.15  Score=48.11  Aligned_cols=20  Identities=25%  Similarity=0.302  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l   43 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTF   43 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=89.96  E-value=0.17  Score=49.46  Aligned_cols=20  Identities=35%  Similarity=0.405  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|.|+-||||||+.+.+
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l   22 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLL   22 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            68999999999999999998

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=89.94  E-value=0.17  Score=48.74  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| ..++|+||.|+|||||...+
T Consensus        33 ~g-~~ilI~GpsGsGKStLA~~L   54 (205)
T 2qmh_A           33 YG-LGVLITGDSGVGKSETALEL   54 (205)
T ss_dssp             TT-EEEEEECCCTTTTHHHHHHH
T ss_pred             CC-EEEEEECCCCCCHHHHHHHH
Confidence            35 78999999999999998877

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=89.82  E-value=0.16  Score=47.72  Aligned_cols=20  Identities=35%  Similarity=0.403  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l   28 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQY   28 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            46899999999999999998

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.81  E-value=0.18  Score=47.95  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l   46 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRF   46 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            36799999999999999988

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=89.80  E-value=0.41  Score=55.23  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 006974          353 VVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl  373 (623)
                      .+.|+||.|+|||++.+.++-
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~  543 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAE  543 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999943

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=89.76  E-value=0.2  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .+++|.|+.||||||+.+.+
T Consensus        20 ~~-~~i~~~G~~g~GKst~~~~l   41 (223)
T 3ld9_A           20 GS-MFITFEGIDGSGKTTQSHLL   41 (223)
T ss_dssp             CC-EEEEEECSTTSSHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            56 89999999999999999998

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=89.74  E-value=0.16  Score=47.06  Aligned_cols=20  Identities=15%  Similarity=0.260  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        17 ~ki~v~G~~~~GKSsli~~l   36 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRF   36 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            35899999999999999998

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=89.73  E-value=0.17  Score=46.42  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l   25 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISY   25 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999998

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=89.72  E-value=0.17  Score=46.74  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        19 ~~i~v~G~~~~GKssl~~~l   38 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKF   38 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=89.67  E-value=0.18  Score=46.27  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l   26 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQF   26 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHH
Confidence            46899999999999999998

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.52  E-value=0.17  Score=47.16  Aligned_cols=20  Identities=25%  Similarity=0.308  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l   28 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRF   28 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHH
Confidence            46899999999999999999

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=89.40  E-value=0.073  Score=61.45  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .-++|+||.|+||||+.+.++
T Consensus       208 ~~vlL~G~~GtGKT~la~~la  228 (758)
T 1r6b_X          208 NNPLLVGESGVGKTAIAEGLA  228 (758)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHH
Confidence            578999999999999999993

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=89.37  E-value=0.18  Score=46.74  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        23 ~ki~vvG~~~~GKSsli~~l   42 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRY   42 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999998

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=89.34  E-value=0.21  Score=48.64  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.||||||+.+.+
T Consensus        17 ~~I~l~G~~GsGKsT~a~~L   36 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKL   36 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999998

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=89.31  E-value=0.18  Score=47.13  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        24 ~ki~vvG~~~~GKSsli~~l   43 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRF   43 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            35899999999999999998

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=89.23  E-value=0.18  Score=47.53  Aligned_cols=20  Identities=15%  Similarity=0.320  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l   45 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQF   45 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            35799999999999999998

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=89.21  E-value=0.19  Score=46.96  Aligned_cols=19  Identities=37%  Similarity=0.525  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus        28 ki~vvG~~~~GKSsLi~~l   46 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERF   46 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999999

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=89.20  E-value=0.18  Score=47.25  Aligned_cols=20  Identities=20%  Similarity=0.395  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l   40 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVV   40 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999987

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=89.03  E-value=0.22  Score=48.55  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .++++.|+.||||||..+.+
T Consensus         4 ~g-~~i~~eG~~g~GKst~~~~l   25 (216)
T 3tmk_A            4 RG-KLILIEGLDRTGKTTQCNIL   25 (216)
T ss_dssp             CC-CEEEEEECSSSSHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            56 79999999999999999998

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=89.02  E-value=0.2  Score=46.62  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        22 ~ki~v~G~~~~GKSsli~~l   41 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQF   41 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            35789999999999999998

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=88.99  E-value=0.2  Score=45.71  Aligned_cols=20  Identities=25%  Similarity=0.255  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~~   28 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISY   28 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35789999999999999998

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.96  E-value=0.19  Score=46.71  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus        25 ki~v~G~~~~GKSsli~~l   43 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRY   43 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            5799999999999999998

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=88.94  E-value=0.21  Score=47.90  Aligned_cols=20  Identities=25%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.|+|||||++.+
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l   58 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKL   58 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHH
Confidence            68899999999999999998

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.91  E-value=0.21  Score=46.17  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        17 ~~i~v~G~~~~GKssl~~~l   36 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQF   36 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=88.86  E-value=0.21  Score=46.21  Aligned_cols=20  Identities=20%  Similarity=0.331  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        16 ~~i~v~G~~~~GKssli~~l   35 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRF   35 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=88.83  E-value=0.21  Score=46.34  Aligned_cols=20  Identities=20%  Similarity=0.295  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        21 ~ki~v~G~~~~GKSsli~~l   40 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRF   40 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=88.80  E-value=0.2  Score=46.57  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        22 ~ki~v~G~~~~GKSsli~~l   41 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKL   41 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=88.79  E-value=0.21  Score=46.82  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l   28 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRY   28 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            35799999999999999998

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=88.79  E-value=0.2  Score=47.09  Aligned_cols=20  Identities=40%  Similarity=0.429  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        25 ~ki~vvG~~~~GKSsli~~l   44 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQF   44 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHH
Confidence            56899999999999999998

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=88.76  E-value=0.21  Score=46.35  Aligned_cols=20  Identities=20%  Similarity=0.331  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        23 ~ki~v~G~~~~GKSsli~~l   42 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVI   42 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=88.74  E-value=0.19  Score=50.28  Aligned_cols=19  Identities=21%  Similarity=0.468  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++++
T Consensus        10 ~I~vvG~~g~GKSTLin~L   28 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSL   28 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999997

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=88.73  E-value=0.22  Score=46.46  Aligned_cols=20  Identities=25%  Similarity=0.390  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l   43 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAF   43 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            36899999999999999998

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=88.72  E-value=0.2  Score=47.10  Aligned_cols=20  Identities=15%  Similarity=0.257  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l   28 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRF   28 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            36799999999999999998

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=88.68  E-value=0.22  Score=50.92  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|++|+|||||++.+
T Consensus         8 g~V~ivG~~nvGKSTLln~l   27 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNL   27 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=88.66  E-value=0.23  Score=47.88  Aligned_cols=19  Identities=37%  Similarity=0.641  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+||.||||+|.-+.|
T Consensus         2 ~Iil~GpPGsGKgTqa~~L   20 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRL   20 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999988

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.54  E-value=0.22  Score=46.50  Aligned_cols=20  Identities=25%  Similarity=0.240  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        29 ~ki~v~G~~~vGKSsli~~l   48 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRF   48 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=88.52  E-value=0.23  Score=49.47  Aligned_cols=19  Identities=26%  Similarity=0.408  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         3 kI~lvG~~n~GKSTL~n~L   21 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNAL   21 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=88.51  E-value=0.22  Score=46.68  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l   49 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKL   49 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            56899999999999999998

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=88.51  E-value=0.24  Score=46.43  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~   26 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIF   26 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999998

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=88.50  E-value=0.24  Score=46.00  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.|+|||||++.+
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l   37 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQV   37 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.48  E-value=0.23  Score=46.64  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        29 ~ki~v~G~~~~GKSsli~~l   48 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRL   48 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHH
Confidence            56899999999999999998

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=88.46  E-value=0.28  Score=51.11  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.|+|||||-..+
T Consensus        41 ~lIvI~GPTgsGKTtLa~~L   60 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDL   60 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            68999999999999999988

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=88.44  E-value=0.2  Score=46.25  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        22 ~~i~v~G~~~~GKSsli~~l   41 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQF   41 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=88.40  E-value=0.23  Score=49.04  Aligned_cols=20  Identities=20%  Similarity=0.426  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        23 ~~I~lvG~~g~GKStl~n~l   42 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSI   42 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=88.34  E-value=0.24  Score=50.64  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        11 g~v~ivG~~nvGKSTLin~l   30 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNL   30 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHH
Confidence            48999999999999999999

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=88.25  E-value=0.24  Score=46.33  Aligned_cols=20  Identities=25%  Similarity=0.315  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        21 ~ki~~~G~~~~GKssl~~~l   40 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSY   40 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.23  E-value=0.24  Score=46.66  Aligned_cols=20  Identities=15%  Similarity=0.313  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        21 ~~i~v~G~~~~GKSsli~~l   40 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRF   40 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=88.22  E-value=0.23  Score=47.27  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l   48 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVF   48 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=88.11  E-value=0.27  Score=51.53  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLA  374 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~  374 (623)
                      ..++|+|..||||||++|++.++
T Consensus        10 ~k~lllG~~~sGKsT~~kq~~~~   32 (354)
T 2xtz_A           10 RKLLLLGAGESGKSTIFKQIKLL   32 (354)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHH
Confidence            35799999999999999999644

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=88.10  E-value=0.13  Score=50.95  Aligned_cols=20  Identities=35%  Similarity=0.504  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 006974          353 VVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .++|+||.|+||||+.+.++
T Consensus        46 ~vll~G~~GtGKT~la~~la   65 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVA   65 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            36899999999999999993

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.98  E-value=0.31  Score=45.94  Aligned_cols=22  Identities=32%  Similarity=0.256  Sum_probs=19.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .-++|+|++|+||||+.-.+
T Consensus        15 ~G-~gvli~G~SGaGKStlal~L   36 (181)
T 3tqf_A           15 DK-MGVLITGEANIGKSELSLAL   36 (181)
T ss_dssp             TT-EEEEEEESSSSSHHHHHHHH
T ss_pred             CC-EEEEEEcCCCCCHHHHHHHH
Confidence            46 78999999999999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	623
d1wb9a2	234	c.37.1.12 (A:567-800) DNA repair protein MutS, the	1e-37
d1ewqa2	224	c.37.1.12 (A:542-765) DNA repair protein MutS, the	2e-35

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  137 bits (346), Expect = 1e-37
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 42/268 (15%)

Query: 274 VCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLS 333
            CP             I I   +HP++                                 
Sbjct: 2   TCPTFID------KPGIRITEGRHPVV--------------------------------E 23

Query: 334 KGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLP 393
           + +++  +   + +  + R+++ITGPN GGK+  M+   L +LM+  G Y+PA+     P
Sbjct: 24  QVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP 83

Query: 394 WFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALA 453
               I   +G    L    STF   ++   +IL   +  SLVL+DEIG GT   +G++LA
Sbjct: 84  IDR-IFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLA 142

Query: 454 TSILQYLRDRVG-LAVVTTHYADLSCLKDKDTRFENAATEFS--LETLRPTYRILWGSTG 510
            +  + L +++  L +  THY +L+ L +K     N   +     +T+   + +  G+  
Sbjct: 143 WACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAAS 202

Query: 511 DSNALNIAKSIGFDRKIIQRAQKLVERL 538
            S  L +A   G  +++I+RA++ +  L
Sbjct: 203 KSYGLAVAALAGVPKEVIKRARQKLREL 230

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score =  130 bits (328), Expect = 2e-35
 Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 37/253 (14%)

Query: 286 FDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDI 345
           F   + I   +HP++                      E                 VP D+
Sbjct: 6   FGDRLQIRAGRHPVV----------------------ERRTE------------FVPNDL 31

Query: 346 KVECETRVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDH 405
           ++  E  +V+ITGPN  GK+  ++   L +L+++ G ++PA     LP FD I   IG  
Sbjct: 32  EMAHE--LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDGIYTRIGAS 88

Query: 406 QSLEQNLSTFSGHISRIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG 465
             L    STF   +  +  IL+  +  SLVL+DE+G GT   +GVA+AT++ + L +R  
Sbjct: 89  DDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRA 148

Query: 466 LAVVTTHYADLSCLKDKDTRFENAATEFSLETLRPTYRILWGSTGDSNALNIAKSIGFDR 525
             +  THY +L+ L     +  + A       L   +++L G    S  + +A   G  +
Sbjct: 149 YTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPK 208

Query: 526 KIIQRAQKLVERL 538
           +++ RA+ L++ +
Sbjct: 209 EVVARARALLQAM 221

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	623
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	100.0
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.97
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.97
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.97
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.96
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.96
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.95
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.95
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.95
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.95
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.94
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.94
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.91
d1ewqa1	275	DNA repair protein MutS, domain III {Thermus aquat	99.88
d1wb9a1	297	DNA repair protein MutS, domain III {Escherichia c	99.86
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.65
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.4
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.35
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.77
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.71
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.22
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.51
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.3
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.21
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.13
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.1
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.96
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.89
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.87
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.82
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.81
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.81
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.75
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.7
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.66
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.62
d1okkd2	207	GTPase domain of the signal recognition particle r	96.56
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.54
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.5
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.44
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.28
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.25
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.19
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.13
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.0
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.99
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.99
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.95
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.94
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.81
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.76
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.68
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.68
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.65
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.64
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.64
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.64
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.64
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.53
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.48
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.33
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.32
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.21
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.03
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.02
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.91
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.83
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.77
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.77
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.58
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.5
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.46
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.37
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.37
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.33
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.33
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.22
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.13
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.11
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.06
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.97
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.93
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	93.85
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	93.84
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.84
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.82
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.68
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.66
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.65
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.59
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.55
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.43
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.38
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.3
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.26
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.23
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.08
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.08
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.02
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.88
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.87
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.81
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.79
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.76
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.73
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.73
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.68
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.66
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.59
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.47
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	92.4
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.26
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.23
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.16
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.15
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.11
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.04
d2fh5b1	207	Signal recognition particle receptor beta-subunit	91.9
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	91.9
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.86
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.81
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.81
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.81
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	91.77
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.74
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.73
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.67
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	91.57
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.53
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.52
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	91.47
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	91.38
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.25
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	91.15
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.15
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	91.02
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	90.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.87
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.71
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	90.58
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.57
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	90.1
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	90.06
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	90.03
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	90.03
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.92
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	89.86
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.85
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	89.77
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	89.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	89.61
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.59
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.44
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	89.23
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	89.14
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.08
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.08
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.04
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	88.98
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	88.92
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	88.61
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	88.43
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	88.2
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	88.13
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	88.08
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	88.06
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.88
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	87.74
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	87.62
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	87.4
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	87.31
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	87.21
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	87.18
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	87.06
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	87.04
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	87.01
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	87.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	86.98
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	86.68
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	86.67
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	86.65
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	86.43
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	86.34
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	86.31
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	86.21
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	85.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	85.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	85.85
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	85.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	85.71
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.42
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	85.34
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	85.33
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	85.32
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	85.01
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	84.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	84.68
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	84.5
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	84.07
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	83.95
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	83.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	83.87
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	83.7
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	83.49
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.04
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	83.02
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	81.98
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	80.37

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.1e-44  Score=359.42  Aligned_cols=220  Identities=30%  Similarity=0.489  Sum_probs=192.6

Q ss_pred             cccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCce
Q 006974          273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETR  352 (623)
Q Consensus       273 ~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~  352 (623)
                      ||||+|++        .+.++++||||++..                                  ..+||+|+.++.  +
T Consensus         1 y~~P~~~~--------~~~i~~~rHPlle~~----------------------------------~~~VpNdi~~~~--~   36 (224)
T d1ewqa2           1 YVRPRFGD--------RLQIRAGRHPVVERR----------------------------------TEFVPNDLEMAH--E   36 (224)
T ss_dssp             CBCCEESS--------SEEEEEECCTTGGGT----------------------------------SCCCCEEEEESS--C
T ss_pred             CCCCccCC--------cEEEEeCcCCEEcCC----------------------------------CCeecceEEeCC--c
Confidence            79999976        389999999998421                                  126799998864  5


Q ss_pred             EEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCC
Q 006974          353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE  432 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~  432 (623)
                      +++|||||+|||||+||++|++++|||+|+|||++. +.+++||+|++++|..|++..+.|+|+.++++++.++..+++.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~-~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~  115 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE-AHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATEN  115 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred             EEEEECCCccccchhhhhhHHHHHHHhccceeecCc-eEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccCCCC
Confidence            899999999999999999999999999999999986 7899999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEE--ecCccccccccccCCCC
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGSTG  510 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~~  510 (623)
                      +|+|+||+++||||.+|.+++++++++|.+.+++++++||+.++..+....  +.+.+|..  +.+.+.++|++..|.++
T Consensus       116 sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l~~~~--~~~~~~~~~~~~~~~~f~Ykl~~G~~~  193 (224)
T d1ewqa2         116 SLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALGLPR--LKNLHVAAREEAGGLVFYHQVLPGPAS  193 (224)
T ss_dssp             EEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCCCTT--EEEEEEEEECCSSSCEEEEEEEESCCS
T ss_pred             cEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhhhhcc--cceEEEEEEEeCCCeEEEEEEeeCCCC
Confidence            999999999999999999999999999999999999999999998876543  45555554  45678899999999999


Q ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHhhc
Q 006974          511 DSNALNIAKSIGFDRKIIQRAQKLVERLR  539 (623)
Q Consensus       511 ~s~a~~ia~~~g~~~~i~~~a~~~~~~~~  539 (623)
                      .|||+++|+++|+|++++++|++.++.+.
T Consensus       194 ~s~ai~iA~~~Glp~~II~rA~~i~~~l~  222 (224)
T d1ewqa2         194 KSYGVEVAAMAGLPKEVVARARALLQAMA  222 (224)
T ss_dssp             SCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHhCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.6e-45  Score=363.08  Aligned_cols=227  Identities=29%  Similarity=0.455  Sum_probs=193.1

Q ss_pred             cccceecCCCCCCCcceEEEcccccCccccchhhhcccccCCCCCCCCCCCCCcEEEceeeeecCCccccccccccCCce
Q 006974          273 GVCPILSSQSHVSFDSSINIEGIKHPLLLGSSLRSLSAASSNSNPLKSDVENSEMTVGSLSKGISDFPVPIDIKVECETR  352 (623)
Q Consensus       273 ~~~P~~~~~~~~~~~~~i~i~~~rHPll~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~y~~~~v~i~l~l~~g~~  352 (623)
                      ||||+|++++      .+.++++||||++.. ..                               +.+||+|+.+.++.+
T Consensus         1 y~~P~~~~~~------~l~i~~~rHPlle~~-~~-------------------------------~~~VpNdi~l~~~~~   42 (234)
T d1wb9a2           1 YTCPTFIDKP------GIRITEGRHPVVEQV-LN-------------------------------EPFIANPLNLSPQRR   42 (234)
T ss_dssp             CBCCEECSSS------CEEEEEECCTTHHHH-CS-------------------------------SCCCCEEEEECSSSC
T ss_pred             CCCCEEcCCC------cEEEEEeECCEEEcc-cC-------------------------------CCccceeEEECCCce
Confidence            7999998753      699999999998421 11                               136899999987668


Q ss_pred             EEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCC
Q 006974          353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE  432 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~  432 (623)
                      +++|||||||||||+||++|++++|||+|+|||++. +.++++|+|+++++..|++..+.|+|+.++++++.++..+++.
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~  121 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-VEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY  121 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-EEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTT
T ss_pred             EEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCc-eecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999996 7899999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEcCchhHHhhccccceeeCceEEE--ecCccccccccccCCC
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDR-VGLAVVTTHYADLSCLKDKDTRFENAATEF--SLETLRPTYRILWGST  509 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~-~~~vii~TH~~~l~~~~~~~~~i~~g~~~~--~~~~l~~~y~l~~g~~  509 (623)
                      +|+|+||+++||||.+|.+++.++++++..+ ++.+|+|||++++..+......+.+.+|..  +.+.+.++|++..|++
T Consensus       122 sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~~~~~~~~v~~~~~~~~~~~~~i~f~YkL~~G~~  201 (234)
T d1wb9a2         122 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAA  201 (234)
T ss_dssp             EEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCC
T ss_pred             cEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhhhhhcccceEEEEEEEeeccCcceEEEEecCCCC
Confidence            9999999999999999999999999999754 578999999999888777667777777764  4667999999999999


Q ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHhh
Q 006974          510 GDSNALNIAKSIGFDRKIIQRAQKLVERL  538 (623)
Q Consensus       510 ~~s~a~~ia~~~g~~~~i~~~a~~~~~~~  538 (623)
                      +.|||+++|+++|+|++++++|++.++++
T Consensus       202 ~~s~ai~iA~~~Glp~~ii~~A~~i~~~l  230 (234)
T d1wb9a2         202 SKSYGLAVAALAGVPKEVIKRARQKLREL  230 (234)
T ss_dssp             SSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999987654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.4e-32  Score=270.27  Aligned_cols=166  Identities=19%  Similarity=0.225  Sum_probs=122.9

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA  386 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~  386 (623)
                      |+++||+|+||+..+  ++||++.+| ++++|+||||||||||||++ |+..+-                 .+...|+||
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~G-ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence            578999999998776  999999999 99999999999999999999 777531                 122358888


Q ss_pred             CCCCCccH------------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          387 KNHPRLPW------------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       387 ~~~~~l~~------------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      +. ..++.                        ++.++..+++.+..++.+++|||||+ |+++|++++.+|++|||||||
T Consensus        80 ~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt  158 (232)
T d2awna2          80 SY-ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL  158 (232)
T ss_dssp             SC-CC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred             cc-ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            75 22221                        34567889999999999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||.....+...+.+...+.|.|+|++|||++ ...+||++..+.+|++..+
T Consensus       159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~  212 (232)
T d2awna2         159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV  212 (232)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999555555667999999999987 5678999999999999876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=7.9e-32  Score=268.62  Aligned_cols=168  Identities=21%  Similarity=0.266  Sum_probs=143.3

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhcee
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLY  383 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G~~  383 (623)
                      |.|.++||+|+||++.+  ++||++.+| ++++|+||||||||||||++ |++.+                  +.+..+|
T Consensus         1 gaI~v~nl~k~yg~~~vl~~vs~~v~~G-ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~   79 (238)
T d1vpla_           1 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY   79 (238)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred             CCEEEEeEEEEECCEEEEccceeEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeE
Confidence            45889999999999877  999999999 99999999999999999999 77653                  1233458


Q ss_pred             ecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeC
Q 006974          384 LPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDE  439 (623)
Q Consensus       384 vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDE  439 (623)
                      +|+...  ..++.                     ++.++..+++.+..++.+++|||||+ |+++|++++.+|+++||||
T Consensus        80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDE  159 (238)
T d1vpla_          80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE  159 (238)
T ss_dssp             ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             eeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            888742  22222                     23445667888899999999999999 7999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+||||.....+.. ++..+++.|.|||++||+++ +..+||++..+.+|++.++
T Consensus       160 Pt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~  214 (238)
T d1vpla_         160 PTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET  214 (238)
T ss_dssp             TTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred             CCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999988 66678888999999999988 5679999999999999876

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=4.9e-32  Score=269.00  Aligned_cols=167  Identities=17%  Similarity=0.233  Sum_probs=140.4

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeec
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp  385 (623)
                      .|+++||+|+||+..+  ++||++++| ++++|+||||||||||+|++ |+..+-                 .+...|+|
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~G-e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~   84 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   84 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence            3789999999998776  999999999 99999999999999999999 777541                 12235888


Q ss_pred             CCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCC
Q 006974          386 AKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIG  441 (623)
Q Consensus       386 ~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~  441 (623)
                      |+..  ..+++                     ++.++..+|+.+..++.+++|||||+ |+++|++++.+|++|||||||
T Consensus        85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt  164 (239)
T d1v43a3          85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL  164 (239)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred             echhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence            8752  12223                     23467889999999999999999999 899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          442 SGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       442 ~glD~~~~~~l~~all~~l-~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||||..+..+... +..+ .+.|.|+|++|||++ ...+||++..+.+|++..+
T Consensus       165 s~LD~~~~~~i~~l-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~  218 (239)
T d1v43a3         165 SNLDAKLRVAMRAE-IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI  218 (239)
T ss_dssp             TTSCHHHHHHHHHH-HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             ccCCHHHHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999994 5555 455999999999998 5579999999999999866

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.97  E-value=1.1e-31  Score=266.92  Aligned_cols=168  Identities=15%  Similarity=0.202  Sum_probs=141.7

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------------hh
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------------SK  379 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------------a~  379 (623)
                      .++++||+|+||+..+  ++||++++| ++++|+||||||||||+|++ |+..+.                       .+
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~G-e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r   81 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence            3789999999998765  999999999 99999999999999999999 776531                       12


Q ss_pred             hceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEE
Q 006974          380 AGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLV  435 (623)
Q Consensus       380 ~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~Ll  435 (623)
                      ...|+||+..  ..+++.                     ..++..+|+.+..++.+++|||||+ |+++|++++.+|++|
T Consensus        82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iL  161 (240)
T d1g2912          82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF  161 (240)
T ss_dssp             SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             cceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3458888752  122332                     3457788999999999999999999 899999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          436 LIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       436 LLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||||+||||.....+...+.+...+.|.|+|++|||++ ...+||++..+.+|+++..
T Consensus       162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~  221 (240)
T d1g2912         162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV  221 (240)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999555444455999999999988 5678999999999998765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.97  E-value=9.3e-32  Score=265.38  Aligned_cols=168  Identities=20%  Similarity=0.210  Sum_probs=141.6

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecC
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPA  386 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~  386 (623)
                      +|+++||+|+|++..+ ++||++.+| ++++|+||||||||||+|++ |+..+-                 .+...|+||
T Consensus         1 mi~v~nlsk~y~~~aL~~vs~~i~~G-e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q   79 (229)
T d3d31a2           1 MIEIESLSRKWKNFSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ   79 (229)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred             CEEEEEEEEEeCCEEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence            3789999999998656 899999999 99999999999999999999 776531                 123358888


Q ss_pred             CCC--CCccHH------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCC
Q 006974          387 KNH--PRLPWF------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTD  445 (623)
Q Consensus       387 ~~~--~~l~~~------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD  445 (623)
                      +..  ..+++.                  ++++..+++.+..++.+++|||||+ |+++|++++++|+++||||||+|||
T Consensus        80 ~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD  159 (229)
T d3d31a2          80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD  159 (229)
T ss_dssp             TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred             ccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCC
Confidence            752  122333                  3456788999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          446 PSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       446 ~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |.....+...+.+..++.|.|+|++|||++ ...+||++..+.+|++..+
T Consensus       160 ~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~  209 (229)
T d3d31a2         160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV  209 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999444433556889999999987 6678999999999999876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.97  E-value=1.4e-31  Score=267.32  Aligned_cols=168  Identities=21%  Similarity=0.264  Sum_probs=141.6

Q ss_pred             CcEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc-
Q 006974          325 SEMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-  381 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G-  381 (623)
                      .+++++||+|+||+..+  ++||++.+| ++++|+||||||||||+|++ |++.+                   .++.| 
T Consensus         5 ~~Lev~~l~k~yg~~~al~~vs~~i~~G-ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             eEEEEeeEEEEECCEEEEeeeeEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence            46899999999998776  999999999 99999999999999999999 87753                   23444 


Q ss_pred             eeecCCCC--CCccHHHHH--------------------HHHc-CCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEE
Q 006974          382 LYLPAKNH--PRLPWFDLI--------------------LADI-GDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLI  437 (623)
Q Consensus       382 ~~vp~~~~--~~l~~~d~i--------------------~~~i-g~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLL  437 (623)
                      .|+|+...  ..+++.+++                    +..+ ++.+..++.+++|||||+ |+++|++++.+|++|||
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLll  163 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeee
Confidence            47888642  334444433                    3333 455677889999999999 79999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          438 DEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       438 DEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||||+|+||.....+.. +++.++++|.|+|++|||++ ...+||++.++.+|++.++
T Consensus       164 DEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~  220 (240)
T d1ji0a_         164 DEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE  220 (240)
T ss_dssp             ECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             cCCCcCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999 66678888999999999987 6689999999999999876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=4.1e-31  Score=261.28  Aligned_cols=167  Identities=14%  Similarity=0.190  Sum_probs=136.9

Q ss_pred             EEEceeeeecCCc--c---c-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISDF--P---V-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~--~---v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      |+++||+|.|++.  .   + ++||++++| ++++|+||||||||||||++ |+..+-                      
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~G-e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCC-CEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            7899999999642  1   3 999999999 99999999999999999999 776431                      


Q ss_pred             -hhhceeecCCCC--CCccHHH------------------------HHHHHcCCchh-hhcccccccHHHH-HHHHHHHh
Q 006974          378 -SKAGLYLPAKNH--PRLPWFD------------------------LILADIGDHQS-LEQNLSTFSGHIS-RIVDILEL  428 (623)
Q Consensus       378 -a~~G~~vp~~~~--~~l~~~d------------------------~i~~~ig~~~~-~~~~~stfS~g~~-rl~~~~~l  428 (623)
                       .+...|+||+..  ..+++++                        .++..+|+.+. .++.++.|||||+ |+++|+++
T Consensus        81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL  160 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (230)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence             122458998752  2233333                        34566777664 6889999999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          429 VSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       429 ~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +.+|++||+||||+||||..+..+...+.+...+.|.|+|++|||++++.+||++..+.+|++..+
T Consensus       161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~  226 (230)
T d1l2ta_         161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE  226 (230)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999995444334568999999999998899999999999998866

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=5e-31  Score=261.95  Aligned_cols=167  Identities=20%  Similarity=0.200  Sum_probs=140.0

Q ss_pred             cEEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------h
Q 006974          326 EMTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------S  378 (623)
Q Consensus       326 ~l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------a  378 (623)
                      .++++||+|+|+  +..+  ++||++.+| ++++|+||||||||||+|++ |+..+-                      .
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~G-e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCC-CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence            378999999994  4343  999999999 99999999999999999999 776431                      1


Q ss_pred             hhceeecCCCC--CCccHH---------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcE
Q 006974          379 KAGLYLPAKNH--PRLPWF---------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESL  434 (623)
Q Consensus       379 ~~G~~vp~~~~--~~l~~~---------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~L  434 (623)
                      +...|+||+..  ..++++                     ..++..+|+.+..++.++.|||||+ |+++|++++.+|++
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~l  161 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccc
Confidence            22458888752  223333                     3457888999999999999999999 89999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          435 VLIDEIGSGTDPSEGVALATSILQYL-RDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       435 lLLDEp~~glD~~~~~~l~~all~~l-~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+||||+||||..+..+.. ++..+ .+.|.|+|++|||++ ...+||++..+.+|++...
T Consensus       162 lllDEPt~~LD~~~~~~i~~-~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~  222 (242)
T d1oxxk2         162 LLLDEPFSNLDARMRDSARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV  222 (242)
T ss_dssp             EEEESTTTTSCGGGHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             eeecCCccCCCHHHHHHHHH-HHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999 55555 556999999999988 5689999999999998765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.5e-31  Score=260.81  Aligned_cols=166  Identities=16%  Similarity=0.160  Sum_probs=139.3

Q ss_pred             EEEceeeeecCCc-----cc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh----------------------
Q 006974          327 MTVGSLSKGISDF-----PV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM----------------------  377 (623)
Q Consensus       327 l~~~~l~~~y~~~-----~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~----------------------  377 (623)
                      |+++||+|.|++.     .+ ++||++.+| ++++|+||||||||||||++ |+..+-                      
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~G-e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSS-CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            7899999999653     23 999999999 99999999999999999999 776531                      


Q ss_pred             hhhceeecCCCC--CCccH---------------------HHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          378 SKAGLYLPAKNH--PRLPW---------------------FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       378 a~~G~~vp~~~~--~~l~~---------------------~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      .+...||||+..  ..+++                     +..++..+|+.+..++.+..|||||+ |+++|++++.+|+
T Consensus        81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~  160 (240)
T d3dhwc1          81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (240)
T ss_dssp             HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred             hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence            122458998752  12223                     23567788999999999999999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRD-RVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~-~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      +||+||||+||||..+..+.. ++..+.+ .|.|+|++|||++ ...+||++..+.+|++..+
T Consensus       161 lLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~  222 (240)
T d3dhwc1         161 VLLCDEATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ  222 (240)
T ss_dssp             EEEEESGGGSSCHHHHHHHHH-HHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             eEEeccccccCCHHHhhHHHH-HHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999 5555654 5999999999998 4579999999999999876

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=9.9e-31  Score=263.45  Aligned_cols=167  Identities=16%  Similarity=0.188  Sum_probs=141.1

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhc-e
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAG-L  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G-~  382 (623)
                      .++++||+|+||+..+  ++||++.+| ++++|+||||||||||+|++ |++.+                   .++.| .
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~G-ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~   82 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV   82 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCC-CEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence            5889999999998776  999999999 99999999999999999999 77653                   12333 4


Q ss_pred             eecCCCC--CCccHHH----------------------------------HHHHHcCCchhhhcccccccHHHH-HHHHH
Q 006974          383 YLPAKNH--PRLPWFD----------------------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDI  425 (623)
Q Consensus       383 ~vp~~~~--~~l~~~d----------------------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~  425 (623)
                      ++|+...  ..+++.+                                  .++..++..+..++.+++||||++ |+.+|
T Consensus        83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iA  162 (254)
T d1g6ha_          83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  162 (254)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             ccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHH
Confidence            7887652  1122222                                  345566778888899999999999 79999


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++++.+|++|||||||+|+||.....+.. ++..++++|.|+|++|||++ +..+||++.++.+|++..+
T Consensus       163 raL~~~P~llilDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~  231 (254)
T d1g6ha_         163 RALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE  231 (254)
T ss_dssp             HHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred             HHHHhCcCchhhcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence            99999999999999999999999999999 55668888999999999987 6689999999999999876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=2.8e-30  Score=260.17  Aligned_cols=167  Identities=19%  Similarity=0.187  Sum_probs=139.8

Q ss_pred             cEEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------------
Q 006974          326 EMTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------------  377 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------------  377 (623)
                      .|+++||+|+||+..+  ++||++.+| ++++|+||||||||||+|+| |+..+.                         
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~G-Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence            4899999999998776  999999999 99999999999999999999 776431                         


Q ss_pred             -------hhhceeecCCCC--CCccHHH----------------------HHHHHcCCchh-hhcccccccHHHH-HHHH
Q 006974          378 -------SKAGLYLPAKNH--PRLPWFD----------------------LILADIGDHQS-LEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       378 -------a~~G~~vp~~~~--~~l~~~d----------------------~i~~~ig~~~~-~~~~~stfS~g~~-rl~~  424 (623)
                             .+...||||+..  ..+++.+                      .++..+|+.+. .++.+++|||||+ |+++
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i  160 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  160 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence                   112347888752  1222322                      34667788765 4677999999999 8999


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      |++++.+|++||+||||+||||.....+.. ++..++++|.|+|++|||++ ...+||++.++.+|++..+
T Consensus       161 AraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~  230 (258)
T d1b0ua_         161 ARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  230 (258)
T ss_dssp             HHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHhcCCCEEEeccccccCCHHHHHHHHH-hhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999 66678888999999999998 5679999999999999876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=2.8e-29  Score=248.77  Aligned_cols=165  Identities=20%  Similarity=0.248  Sum_probs=135.7

Q ss_pred             EEEceeeeecCCccccccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-----------------hhhceeecCCC
Q 006974          327 MTVGSLSKGISDFPVPIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-----------------SKAGLYLPAKN  388 (623)
Q Consensus       327 l~~~~l~~~y~~~~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-----------------a~~G~~vp~~~  388 (623)
                      +++ ++.|+||+..+++||++. + ++++|+||||||||||||+| |++.+.                 .+...|+||+.
T Consensus         3 l~v-~~~k~~g~~~~~vs~~~~-~-e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~   79 (240)
T d2onka1           3 LKV-RAEKRLGNFRLNVDFEMG-R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDY   79 (240)
T ss_dssp             EEE-EEEEEETTEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSC
T ss_pred             EEE-EEEEEECCEEEEEEEEeC-C-EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccch
Confidence            455 678999987778888885 5 69999999999999999999 777541                 11234788875


Q ss_pred             C--CCccHH-------------------HHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCH
Q 006974          389 H--PRLPWF-------------------DLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDP  446 (623)
Q Consensus       389 ~--~~l~~~-------------------d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~  446 (623)
                      .  ..++++                   .+++..+|+.+..++.+++|||||+ |+++|++++.+|+++||||||+||||
T Consensus        80 ~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~  159 (240)
T d2onka1          80 ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL  159 (240)
T ss_dssp             CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCH
T ss_pred             hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCH
Confidence            2  223333                   3457788999999999999999999 89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          447 SEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       447 ~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ..+..+...+.+..++.|.|+|++||+++ ...+||++..+.+|++...
T Consensus       160 ~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~  208 (240)
T d2onka1         160 KTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK  208 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            99999999555543455899999999987 6679999999999998765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-29  Score=250.30  Aligned_cols=168  Identities=14%  Similarity=0.172  Sum_probs=132.5

Q ss_pred             CcEEEceeeeecCCc---cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974          325 SEMTVGSLSKGISDF---PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK  379 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~---~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~  379 (623)
                      |.|+++||+|+|++.   .+  ++||++++| ++++|+||||||||||+|++ |++.+                   +.+
T Consensus        10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~   88 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR   88 (251)
T ss_dssp             CCEEEEEEEECCTTSTTCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEEEEECCCCCCCEeEeceEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence            469999999999753   24  999999999 99999999999999999999 77653                   223


Q ss_pred             hceeecCCCCCCc--cHHHHH-------------------------HHHc--CCchhhhcccccccHHHH-HHHHHHHhc
Q 006974          380 AGLYLPAKNHPRL--PWFDLI-------------------------LADI--GDHQSLEQNLSTFSGHIS-RIVDILELV  429 (623)
Q Consensus       380 ~G~~vp~~~~~~l--~~~d~i-------------------------~~~i--g~~~~~~~~~stfS~g~~-rl~~~~~l~  429 (623)
                      ...|+||+.. .+  ++.+++                         +..+  |....+....+.|||||+ |+++|++++
T Consensus        89 ~i~~v~Q~~~-lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          89 QVAAVGQEPQ-VFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             HEEEECSSCC-CCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             Hhhhcccccc-ccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            4568888762 22  222222                         1111  222334556789999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      .+|+++||||||++||+.....+...+.+...+.+.|+|++||+++....||+++++.+|++..+
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~  232 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREG  232 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEE
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999999885444333457899999999997788999999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=4.7e-28  Score=243.42  Aligned_cols=167  Identities=14%  Similarity=0.150  Sum_probs=131.1

Q ss_pred             CcEEEceeeeecCCc--cc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhh
Q 006974          325 SEMTVGSLSKGISDF--PV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKA  380 (623)
Q Consensus       325 ~~l~~~~l~~~y~~~--~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~  380 (623)
                      |.|+++||+|+|++.  ++  ++||++.+| ++++|+||||||||||++++ |+..+                   +.+.
T Consensus        12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~G-e~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~   90 (253)
T d3b60a1          12 GDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ   90 (253)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             eEEEEEEEEEEeCCCCCceeeceEEEEcCC-CEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence            569999999999753  34  999999999 99999999999999999999 77653                   1233


Q ss_pred             ceeecCCCCCC-ccHH----------------HHHHHHcCCc-----------hhhhcccccccHHHH-HHHHHHHhcCC
Q 006974          381 GLYLPAKNHPR-LPWF----------------DLILADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       381 G~~vp~~~~~~-l~~~----------------d~i~~~ig~~-----------~~~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ..|+|++.... -+..                ..++...+..           ..+....+.|||||+ |+++|++++.+
T Consensus        91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~  170 (253)
T d3b60a1          91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD  170 (253)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            45888875211 1111                1222222322           233455678999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||++||+.....+...+ ..+.+ +.|+|++||+++....||+++++.+|++...
T Consensus       171 p~ililDEpts~LD~~~~~~i~~~l-~~l~~-~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~  231 (253)
T d3b60a1         171 SPILILDEATSALDTESERAIQAAL-DELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVER  231 (253)
T ss_dssp             CSEEEEETTTSSCCHHHHHHHHHHH-HHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred             CCEEEeccccccCCHHHHHHHHHHH-HHhcc-CCEEEEEECCHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999854 44554 7899999999997788999999999998765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.2e-28  Score=241.69  Aligned_cols=164  Identities=19%  Similarity=0.272  Sum_probs=133.1

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh------------------hhhhceeec
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL------------------MSKAGLYLP  385 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~------------------~a~~G~~vp  385 (623)
                      .++++||+++|   .+ |+||++.+| ++++|+||||||||||||++ |+...                  ++..+.|++
T Consensus         3 il~~~dv~~~~---~l~~isl~I~~G-ei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~   78 (231)
T d1l7vc_           3 VMQLQDVAEST---RLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS   78 (231)
T ss_dssp             EEEEEEECCTT---TSCSEEEEEETT-CEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEEC
T ss_pred             EEEEECcccCc---eecCEEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeee
Confidence            57889998876   34 999999999 99999999999999999999 65421                  112234555


Q ss_pred             CCCCCCc--c----------------HHHHHHHHcCCchhhhcccccccHHHH-HHHHHHHhcC-------CCcEEEEeC
Q 006974          386 AKNHPRL--P----------------WFDLILADIGDHQSLEQNLSTFSGHIS-RIVDILELVS-------RESLVLIDE  439 (623)
Q Consensus       386 ~~~~~~l--~----------------~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~-------~~~LlLLDE  439 (623)
                      +.....+  +                .++.+...+++.+.+++.+++|||||+ |+.+|++++.       +|+++||||
T Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDE  158 (231)
T d1l7vc_          79 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE  158 (231)
T ss_dssp             SCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred             ccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcC
Confidence            5432111  1                134566778889999999999999998 7888888764       668999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh-HHhhccccceeeCceEEEe
Q 006974          440 IGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD-LSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       440 p~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~-l~~~~~~~~~i~~g~~~~~  494 (623)
                      ||+||||.....+.. +++.+++.|.|+|++||+++ +..+||+++.+.+|++..+
T Consensus       159 Pt~gLD~~~~~~i~~-~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~  213 (231)
T d1l7vc_         159 PMNSLDVAQQSALDK-ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS  213 (231)
T ss_dssp             CSTTCCHHHHHHHHH-HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCC
T ss_pred             CCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE
Confidence            999999999999988 77778888999999999987 6789999999999998765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.4e-27  Score=237.92  Aligned_cols=164  Identities=16%  Similarity=0.149  Sum_probs=130.1

Q ss_pred             EEEceeeeecC--Cccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhhhce
Q 006974          327 MTVGSLSKGIS--DFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSKAGL  382 (623)
Q Consensus       327 l~~~~l~~~y~--~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~~G~  382 (623)
                      |+++||+|+|+  +.++  ++||++.+| ++++|+||||||||||+|++ |++.+                   +.+...
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence            68899999994  3445  999999999 99999999999999999999 77653                   123456


Q ss_pred             eecCCCCCCc--cHHHHH---------------HHHcCCc-----------hhhhcccccccHHHH-HHHHHHHhcCCCc
Q 006974          383 YLPAKNHPRL--PWFDLI---------------LADIGDH-----------QSLEQNLSTFSGHIS-RIVDILELVSRES  433 (623)
Q Consensus       383 ~vp~~~~~~l--~~~d~i---------------~~~ig~~-----------~~~~~~~stfS~g~~-rl~~~~~l~~~~~  433 (623)
                      ||||+.. .+  ++.+++               ....+..           ..+....+.||||++ |+++|++++.+|+
T Consensus        81 ~v~Q~~~-lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~  159 (241)
T d2pmka1          81 VVLQDNV-LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             EECSSCC-CTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEecccc-cCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence            8898752 22  222222               2222222           223456689999999 8999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          434 LVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       434 LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ++||||||++||+.....+...+. .+.+ +.|+|++||+++....||+++++.+|++...
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~-~l~~-~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~  218 (241)
T d2pmka1         160 ILIFDEATSALDYESEHVIMRNMH-KICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ  218 (241)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHH-HHHT-TSEEEEECSSGGGGTTSSEEEEEETTEEEEE
T ss_pred             hhhhhCCccccCHHHHHHHHHHHH-HHhC-CCEEEEEECCHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999554 4544 7899999999997788999999999998765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.95  E-value=2.9e-28  Score=243.38  Aligned_cols=165  Identities=14%  Similarity=0.151  Sum_probs=128.4

Q ss_pred             cEEEceeeeecCC-ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------------------hhhce
Q 006974          326 EMTVGSLSKGISD-FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------------------SKAGL  382 (623)
Q Consensus       326 ~l~~~~l~~~y~~-~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------------------a~~G~  382 (623)
                      +++++||+|+|++ +.+  ++||++++| ++++|+||||||||||+|++ |++.+-                   .+...
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence            4789999999965 445  999999999 99999999999999999999 776531                   22335


Q ss_pred             eecCCCCCCc--cHHHH----------------HHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCC
Q 006974          383 YLPAKNHPRL--PWFDL----------------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRE  432 (623)
Q Consensus       383 ~vp~~~~~~l--~~~d~----------------i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~  432 (623)
                      ||||+.. .+  ++.++                .....+..+           .+....+.|||||+ |+++|++++.+|
T Consensus        80 ~v~Q~~~-lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p  158 (242)
T d1mv5a_          80 FVSQDSA-IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (242)
T ss_dssp             EECCSSC-CCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEccccc-cCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            8888752 11  12222                222222221           12234567999999 899999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          433 SLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       433 ~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      +++||||||++||+.....+... +..+.+ +.|+|++||+++....||+++++.+|++...
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~-l~~l~~-~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~  218 (242)
T d1mv5a_         159 KILMLDEATASLDSESESMVQKA-LDSLMK-GRTTLVIAHRLSTIVDADKIYFIEKGQITGS  218 (242)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHH-HHHHHT-TSEEEEECCSHHHHHHCSEEEEEETTEECCC
T ss_pred             CEEEecCCccccCHHHHHHHHHH-HHHHcC-CCEEEEEECCHHHHHhCCEEEEEECCEEEEE
Confidence            99999999999999999999984 455554 7899999999997778999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=3.1e-27  Score=237.29  Aligned_cols=168  Identities=15%  Similarity=0.174  Sum_probs=131.9

Q ss_pred             CCcEEEceeeeecCC--ccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhh-------------------hhh
Q 006974          324 NSEMTVGSLSKGISD--FPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASL-------------------MSK  379 (623)
Q Consensus       324 ~~~l~~~~l~~~y~~--~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~-------------------~a~  379 (623)
                      +|.|+++||+|+|++  .++  ++||++.+| ++++|+||||||||||+|++ |+..+                   +.+
T Consensus        14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~   92 (255)
T d2hyda1          14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN   92 (255)
T ss_dssp             SCCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred             CCEEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence            357999999999965  345  999999999 99999999999999999999 77653                   123


Q ss_pred             hceeecCCCCC-CccHHHH---------------HHHHcCCchh-----------hhcccccccHHHH-HHHHHHHhcCC
Q 006974          380 AGLYLPAKNHP-RLPWFDL---------------ILADIGDHQS-----------LEQNLSTFSGHIS-RIVDILELVSR  431 (623)
Q Consensus       380 ~G~~vp~~~~~-~l~~~d~---------------i~~~ig~~~~-----------~~~~~stfS~g~~-rl~~~~~l~~~  431 (623)
                      ...|||+.... ..++.++               ++...++.+.           +......||||++ |+++|++++.+
T Consensus        93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~  172 (255)
T d2hyda1          93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN  172 (255)
T ss_dssp             TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred             eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            44588887521 1122222               2333444332           2234567999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      |+++||||||++||+.....+... +..+.+ +.|+|++||+++....||+++.+.+|++...
T Consensus       173 p~ililDEpts~LD~~t~~~i~~~-l~~l~~-~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~  233 (255)
T d2hyda1         173 PPILILDEATSALDLESESIIQEA-LDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVET  233 (255)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHH-HHHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred             CCEEEEeCccccCCHHHHHHHHHH-HHHHhc-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999884 444554 6899999999997788999999999998765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=2.7e-27  Score=230.06  Aligned_cols=156  Identities=20%  Similarity=0.252  Sum_probs=117.8

Q ss_pred             cEEEceeeeecCCccc-cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh--------------hhhceeecCCCC
Q 006974          326 EMTVGSLSKGISDFPV-PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM--------------SKAGLYLPAKNH  389 (623)
Q Consensus       326 ~l~~~~l~~~y~~~~v-~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~--------------a~~G~~vp~~~~  389 (623)
                      .|+++||+++|+...+ ++||++++| ++++|+||||||||||||++ |++.+.              ...-.|+|+...
T Consensus         2 ~lev~~ls~~y~~~vl~~is~~i~~G-ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~   80 (200)
T d1sgwa_           2 KLEIRDLSVGYDKPVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII   80 (200)
T ss_dssp             EEEEEEEEEESSSEEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred             eEEEEEEEEEeCCeEEeceEEEEcCC-CEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeeccc
Confidence            3789999999976444 999999999 99999999999999999999 776542              112347777531


Q ss_pred             --CCccHHH-------------------HHHHHcCCchhhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHH
Q 006974          390 --PRLPWFD-------------------LILADIGDHQSLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPS  447 (623)
Q Consensus       390 --~~l~~~d-------------------~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~  447 (623)
                        ..+.+.+                   +.+..++..+ +.+.+++|||||+ |+.+|++++.+|+++||||||+|+|+.
T Consensus        81 ~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~  159 (200)
T d1sgwa_          81 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED  159 (200)
T ss_dssp             CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred             CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHH
Confidence              1222211                   2344444433 5678899999999 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccccee
Q 006974          448 EGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRF  486 (623)
Q Consensus       448 ~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i  486 (623)
                      ....+.+.+.+..++.+.++|.++|++   .+||....+
T Consensus       160 ~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l  195 (200)
T d1sgwa_         160 SKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENL  195 (200)
T ss_dssp             THHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEG
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhhe
Confidence            999999978776666555555555554   367765443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.5e-25  Score=226.66  Aligned_cols=162  Identities=19%  Similarity=0.142  Sum_probs=121.4

Q ss_pred             EEEceeeeecCCccc--cccccccCCceEEEEEcCCCCCHHHHHHHH-hhhhhh-------hhhceeecCCCCCCcc--H
Q 006974          327 MTVGSLSKGISDFPV--PIDIKVECETRVVVITGPNTGGKTASMKTL-GLASLM-------SKAGLYLPAKNHPRLP--W  394 (623)
Q Consensus       327 l~~~~l~~~y~~~~v--~i~l~l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~-------a~~G~~vp~~~~~~l~--~  394 (623)
                      +.++|+++  ++.+|  ++||++.+| ++++|+||||||||||||+| |++.+.       .++ .|+|+.. ..++  +
T Consensus        39 i~~~~~~~--~g~pvL~~isl~i~~G-e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i-~~v~Q~~-~l~~~tv  113 (281)
T d1r0wa_          39 VSFSHLCL--VGNPVLKNINLNIEKG-EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV-SFCSQFS-WIMPGTI  113 (281)
T ss_dssp             -CHHHHHH--TTCEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCE-EEECSSC-CCCSEEH
T ss_pred             EEEEEcCC--CCCeEEeCeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEE-EEEeccc-cccCcee
Confidence            34444443  34455  999999999 99999999999999999999 776543       222 4778765 2221  2


Q ss_pred             HHH--------------HHHHcCCch-----------hhhcccccccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHH
Q 006974          395 FDL--------------ILADIGDHQ-----------SLEQNLSTFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSE  448 (623)
Q Consensus       395 ~d~--------------i~~~ig~~~-----------~~~~~~stfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~  448 (623)
                      .++              +....+...           .+.....+|||||+ |+++|++++.+|+++||||||+|||+..
T Consensus       114 ~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~  193 (281)
T d1r0wa_         114 KENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT  193 (281)
T ss_dssp             HHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHH
T ss_pred             eccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHH
Confidence            222              222222222           12344567999999 8999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEEEe
Q 006974          449 GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATEFS  494 (623)
Q Consensus       449 ~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~~~  494 (623)
                      ...+...++..+ ..+.|+|++||+++....||+++.+.+|++.+.
T Consensus       194 ~~~i~~~~~~~~-~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~  238 (281)
T d1r0wa_         194 EEQVFESCVCKL-MANKTRILVTSKMEHLRKADKILILHQGSSYFY  238 (281)
T ss_dssp             HHHHHHHCCCCC-TTTSEEEEECSCHHHHHTCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHh-hCCCEEEEEechHHHHHhCCEEEEEECCEEEEE
Confidence            988877555433 347899999999987788999999999998876

>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: DNA repair protein MutS, domain III
superfamily: DNA repair protein MutS, domain III
family: DNA repair protein MutS, domain III
domain: DNA repair protein MutS, domain III
species: Thermus aquaticus [TaxId: 271]

Probab=99.88  E-value=1.5e-21  Score=197.11  Aligned_cols=248  Identities=15%  Similarity=0.107  Sum_probs=198.1

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMM---QSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNN   77 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~---~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~   77 (623)
                      ||+|++|+|.+.|+.|.++|++|++.|+++.+.-   +...-.|++++|+++++.++..|.+ ++.++..+..++..+..
T Consensus        17 ~GkRlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dler~l~~~~~~~~-~~~~~~~~~~~~~~~~~   95 (275)
T d1ewqa1          17 PGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRA-SPKDLGALRRSLQILPE   95 (275)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChhhHHHHHHHHhccchhHHHHHHHHcCCC-CchHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999886522   2333468899999999999999986 89999999999999999


Q ss_pred             HHHHHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhcc-------CCCcccCCcCHHHHHHHHHHHHHHHHHH
Q 006974           78 VWKKLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDC-------KLLIILDRASEDLELIRAERKRNMENLD  150 (623)
Q Consensus        78 l~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~-------~~~~I~d~as~~L~~iR~~~~~~~~~l~  150 (623)
                      +...+.....        .+          .+..+.+.|..+|.+       +++.|++++|++|+.+|.........+.
T Consensus        96 i~~~l~~~~~--------~~----------~l~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~ld~~~~~~~~~~~~l~  157 (275)
T d1ewqa1          96 LRALLGEEVG--------LP----------DLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFL  157 (275)
T ss_dssp             HHHHHCTTSC--------CC----------CCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcc--------cc----------HHHHHHHHHHHHHhhCcHhhccccCEeCCCCCHHHHHHHHHHHhHHHHHH
Confidence            9888754211        11          122333444444432       3457999999999999999887777776


Q ss_pred             HHHHHHHHHHHHhcCCCCccccccc-CceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHH
Q 006974          151 SLLKKVAAQIFQAGGIDKPLITKRR-SRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAE  229 (623)
Q Consensus       151 ~~l~~~~~~~~~~~~~~~~~i~~~~-~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~e  229 (623)
                      +.+.+..    ...+.....+...+ .+|++.++......+|.+|.+..+.++..+|.+| ++.++++++.++..+....
T Consensus       158 ~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~l~~~l~~~~~~~~~~  232 (275)
T d1ewqa1         158 ELEERER----ERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLP-EMKEKEREVYRLEALIRRR  232 (275)
T ss_dssp             HHHHHHH----HHHCCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HhcCCcceeeeeccccceeeeehhhhhhhhhhhhhhhccccceeeeecH-HHHHHHHHHHHHHHHHHHH
Confidence            6655432    22334333443333 4899999988888888889888887777777666 5899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q 006974          230 ETAILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD  272 (623)
Q Consensus       230 e~~il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~  272 (623)
                      +.+|+.+|.+.+..+.+.+..+++.+|+|||++|+|.+|.+++
T Consensus       233 ~~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~SlA~vA~~~G  275 (275)
T d1ewqa1         233 EEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVRYG  275 (275)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999998764

>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA repair protein MutS, domain III
superfamily: DNA repair protein MutS, domain III
family: DNA repair protein MutS, domain III
domain: DNA repair protein MutS, domain III
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.3e-21  Score=194.80  Aligned_cols=257  Identities=14%  Similarity=0.120  Sum_probs=202.5

Q ss_pred             CchHhHhccCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 006974            1 MGHAVVQKAQIPFGKSLEESQKLLNQTSAALAMMQSQPLDLSTIEDIAGILNSAVSGQLLSPSEICAVRRTLRAVNNVWK   80 (623)
Q Consensus         1 ~G~~~l~~~~l~p~~~~~~i~~~l~~t~e~~~~~~~~~~~l~~i~Di~~~l~r~~~g~~l~~~eL~~i~~~L~~~~~l~~   80 (623)
                      ||+|++|+|.+.|..+.++|++|++.|+++..+......-|+.++|+++++.++..|.. ++.++..+...+..+..+.+
T Consensus        33 ~GkRlLr~wLl~Pl~d~~~I~~R~d~Ve~l~~~~~~l~~~L~~l~Dierl~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~  111 (297)
T d1wb9a1          33 MGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLERILARLALRTA-RPRDLARMRHAFQQLPELRA  111 (297)
T ss_dssp             HHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHHHHHHHTTCSHHHHHHHHHHTCC-CHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHhHHHHHHHHhccchHHHHHHHHHHHhh-chhHHHHHHHHHHhhhhHHH
Confidence            79999999999999999999999999998866544334467899999999999998886 89999999999988888877


Q ss_pred             HHHHhhhccCCcccccchHHHHHhcCCChhHHHHHHhhhhccC-------CCcccCCcCHHHHHHHHHHHHHHHHHHHHH
Q 006974           81 KLTEAAELDGDSLQRYSPLLELLKNCNFLTELEEKIGFCIDCK-------LLIILDRASEDLELIRAERKRNMENLDSLL  153 (623)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~~I~~~Id~~-------~~~I~d~as~~L~~iR~~~~~~~~~l~~~l  153 (623)
                      .+.....         ............+..+.+.|..+|++.       ++.|+++++++|+.+|+.+......++++.
T Consensus       112 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~g~~~~ld~l~~~~~~~~~~l~~l~  182 (297)
T d1wb9a1         112 QLETVDS---------APVQALREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLE  182 (297)
T ss_dssp             HHHSCCC---------HHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhccc---------hhhhhhhccccchhhHHHHHHHHHhccChhhhccCCeeCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            6643211         111112223345667778888888642       347999999999999999888777777665


Q ss_pred             HHHHHHHHHhcCCCCccccc-ccCceEEEEccccccCCCCcEEEEEecCCcEEEeccchhhhhhHHHHHHhHHHHHHHHH
Q 006974          154 KKVAAQIFQAGGIDKPLITK-RRSRMCVGIKASHKYLLPDGIALNVSSSGATYFMEPKGAVEFNNMEVRLSNSEIAEETA  232 (623)
Q Consensus       154 ~~~~~~~~~~~~~~~~~i~~-~~~r~~i~v~~~~~~~~~~g~~~~~s~sg~~~~~ep~~~~~l~~~~~~l~~~~~~ee~~  232 (623)
                      .....    ..+++...+.+ ...+|++.++.......|.+|+......+..+| .+..+.++++++.++..+....+..
T Consensus       183 ~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~l~~l~~~l~~~~~~i~~~~~~  257 (297)
T d1wb9a1         183 VRERE----RTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERY-IIPELKEYEDKVLTSKGKALALEKQ  257 (297)
T ss_dssp             HHHHH----HHTCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEE-ECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----HcCCCcceEEEeeccceeeeecccccccccchhhhhhhcccceee-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54322    23344444443 345899999988777788788777666554444 5556899999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q 006974          233 ILSLLTAEIAKSEREIKYLMDRVLEIDLAFARAGFAQWMD  272 (623)
Q Consensus       233 il~~L~~~i~~~~~~l~~~~~~~~~lD~~~a~a~~a~~~~  272 (623)
                      ++.+|.+.+..+.+.|..+.+.+|+|||++|+|.+|.++|
T Consensus       258 ~~~~l~~~~~~~~~~l~~~~~~iaeLD~l~S~A~~A~~~N  297 (297)
T d1wb9a1         258 LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN  297 (297)
T ss_dssp             HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999876

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.35  E-value=7.4e-14  Score=130.05  Aligned_cols=77  Identities=18%  Similarity=0.050  Sum_probs=60.0

Q ss_pred             cccHHHH-HHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccceeeCceEE
Q 006974          414 TFSGHIS-RIVDILELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTRFENAATE  492 (623)
Q Consensus       414 tfS~g~~-rl~~~~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~i~~g~~~  492 (623)
                      .+++++. +..++.+...+|+++++|||+..  +.....+..++.+.+.+.+.++|+++|+.....++++.....++.+.
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~  158 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLI  158 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEE
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCEEE
Confidence            4567777 78888888999999999998544  33455666667777777788999999998777788887777787764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=1.5e-08  Score=101.72  Aligned_cols=73  Identities=21%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             ccccccHHHHHHH-HHH--H--hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974          411 NLSTFSGHISRIV-DIL--E--LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR  485 (623)
Q Consensus       411 ~~stfS~g~~rl~-~~~--~--l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~  485 (623)
                      ..+.+|.|++.+. ++.  .  ....++++++|||-++|+|.....++. +++...+ +.-+|+|||...+...+|+...
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~-~~QviitTHsp~~~~~~d~~~~  293 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSK-HTQFIVITHNKIVMEAADLLHG  293 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTT-TSEEEEECCCTTGGGGCSEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHH-HHHHhcc-CCEEEEEECCHHHHHhcccEEE
Confidence            4678899988532 222  1  456789999999999999999999998 4444543 4679999999998888887654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=1.3e-06  Score=90.56  Aligned_cols=77  Identities=13%  Similarity=0.062  Sum_probs=60.5

Q ss_pred             hcccccccHHHH-HHHHHHH----hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974          409 EQNLSTFSGHIS-RIVDILE----LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD  483 (623)
Q Consensus       409 ~~~~stfS~g~~-rl~~~~~----l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~  483 (623)
                      ...++.+|||++ .+++++.    ...++++++||||+++||+.....++. ++..+...+.-+|+|||+..+...+|..
T Consensus       327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~-~l~~~~~~~~Q~I~iTH~~~~~~~ad~~  405 (427)
T d1w1wa_         327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFEKSDAL  405 (427)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHTTCSEE
T ss_pred             hhhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCCCEEEEEeCCHHHHHhcccE
Confidence            356678999998 4444332    356778999999999999999999998 5555555556699999999999999987


Q ss_pred             cee
Q 006974          484 TRF  486 (623)
Q Consensus       484 ~~i  486 (623)
                      +.+
T Consensus       406 ~~V  408 (427)
T d1w1wa_         406 VGV  408 (427)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.51  E-value=0.0005  Score=70.88  Aligned_cols=117  Identities=18%  Similarity=0.145  Sum_probs=49.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhc--
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELV--  429 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~--  429 (623)
                      .-.+|+||.|.|||+++.-++.-  +. .| -+|..-. ...++.     +... .+-.+.+....-+.|+..++..+  
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~--i~-~~-~vp~~l~-~~~i~~-----ld~~-~l~ag~~~~g~~e~r~~~i~~~~~~  112 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR--IV-KG-DVPEGLK-GKRIVS-----LQMG-SLLAGAKYRGEFEERLKAVIQEVVQ  112 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH--HH-HT-CSCTTST-TCEEEE-----ECC------------CHHHHHHHHHHHHHT
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH--HH-hC-CCCHHHc-CceEEE-----eeHh-hhhcccCcchhHHHHHHHHHHHhcc
Confidence            45689999999999998866321  11 23 2443221 111100     1111 11111122211233555444422  


Q ss_pred             C-CCcEEEEeCCCCCCCH---HHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          430 S-RESLVLIDEIGSGTDP---SEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       430 ~-~~~LlLLDEp~~glD~---~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      . ++-+|++||.-.=+..   ..+..++..+.-+|......+|.+|..-+...+
T Consensus       113 ~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~~  166 (387)
T d1qvra2         113 SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREI  166 (387)
T ss_dssp             TCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHH
T ss_pred             CCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHHh
Confidence            2 3457999998544332   223456666666777666677777666555443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.0021  Score=60.41  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=61.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccHHHHHHHHHH
Q 006974          351 TRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISRIVDIL  426 (623)
Q Consensus       351 ~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~g~~rl~~~~  426 (623)
                      ..+++++||||+||||.+==++ .+.-..+...++.++. .+.+-++++-   ..+|..-........+..-.++... .
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt-~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~-~   86 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT-FRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ-A   86 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT-TCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHH-H
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc-ccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHH-H
Confidence            3799999999999999875553 2222223334566654 5666677653   3445432222333333322222111 1


Q ss_pred             HhcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHh
Q 006974          427 ELVSRESLVLIDEIGS-GTDPSEGVALATSILQYLR  461 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l~  461 (623)
                      +...+.+++|+|=||+ ..|......+.. +.+...
T Consensus        87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~-l~~~~~  121 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRLQNKSHLMEELKK-IVRVMK  121 (211)
T ss_dssp             HHHTTCSEEEECCCCCGGGHHHHHHHHHH-HHHHHT
T ss_pred             HHHcCCCEEEeccCCCccccHHHHHHHHH-HHHHHh
Confidence            2346789999998885 355555566655 555443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.21  E-value=0.002  Score=62.92  Aligned_cols=124  Identities=17%  Similarity=0.218  Sum_probs=71.2

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhh-hhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASL-MSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~-~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~  424 (623)
                      ++.| +++-|.||.|+||||+.-++..... ....-.|+-.++  .+..  ..+.++|.+.+---.....+.++. ++..
T Consensus        54 ip~g-~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~--~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~  128 (268)
T d1xp8a1          54 IPRG-RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDP--VYARALGVNTDELLVSQPDNGEQALEIME  128 (268)
T ss_dssp             EETT-SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH--HHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             ccCc-eEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCH--HHHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence            3456 8999999999999999877732221 111224666554  3332  467788876432223344455554 4433


Q ss_pred             HHHhcCCCcEEEEeCCCCCC-------CHHH-----HHHH----HHHHHHHHhcCCcEEEEEcCchh
Q 006974          425 ILELVSRESLVLIDEIGSGT-------DPSE-----GVAL----ATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~gl-------D~~~-----~~~l----~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .+..-.+..|+|+|=.++--       |..+     +..+    ...+...+.+.+..+|+|.|-..
T Consensus       129 ~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~  195 (268)
T d1xp8a1         129 LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE  195 (268)
T ss_dssp             HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred             HHHhcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEee
Confidence            33334578999999998744       1111     2222    22233344466788888888763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.13  E-value=0.002  Score=60.89  Aligned_cols=124  Identities=10%  Similarity=0.060  Sum_probs=68.5

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCchh----------hhcccccc
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQS----------LEQNLSTF  415 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~----------~~~~~stf  415 (623)
                      +++| .++.|.||+|+|||||.-+++....- .....|+..+. ..-. +-+.+..+|....          .+......
T Consensus        23 i~~g-sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (242)
T d1tf7a2          23 FFKD-SIILATGATGTGKTLLVSRFVENACANKERAILFAYEE-SRAQ-LLRNAYSWGMDFEEMERQNLLKIVCAYPESA   99 (242)
T ss_dssp             EESS-CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS-CHHH-HHHHHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CcCC-eEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC-CHHH-HHHHHHHcCCChHHHhhcCceEEEEeecchh
Confidence            5678 89999999999999999998443221 12234554442 1111 1122233332210          01111111


Q ss_pred             cHHHHHHHHHHH--hcCCCcEEEEeCCC---CCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          416 SGHISRIVDILE--LVSRESLVLIDEIG---SGTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       416 S~g~~rl~~~~~--l~~~~~LlLLDEp~---~glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      ... ..+..+..  ...++.++++|-.+   .+.+...-......+...+++.+.++++++|-.
T Consensus       100 ~~~-~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~  162 (242)
T d1tf7a2         100 GLE-DHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  162 (242)
T ss_dssp             CHH-HHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             hHH-HHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeE
Confidence            111 12222222  34678999999753   344555545555557777777888888888753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=1.5e-05  Score=72.87  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=24.3

Q ss_pred             cccccccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          342 PIDIKVECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       342 ~i~l~l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      +.+|.+.+|  +++|+|||||||||+|.+|.
T Consensus        17 ~~~i~f~~~--~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          17 ARTFDLDEL--VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             EEEECHHHH--HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEEcCCC--eEEEECCCCCCHHHHHHHHH
Confidence            555666655  88999999999999999994

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0025  Score=62.05  Aligned_cols=123  Identities=17%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhh-hhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLAS-LMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~-~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~  424 (623)
                      ++.| .++.|.||+|+||||++-++.... -......|+-.++  .+..  ..+..+|..-+---....-+.++. .+..
T Consensus        51 i~~g-~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~--~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~  125 (263)
T d1u94a1          51 LPMG-RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDP--IYARKLGVDIDNLLCSQPDTGEQALEICD  125 (263)
T ss_dssp             EETT-SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH--HHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             ccCc-eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCH--HHHHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence            3466 899999999999999987763322 2222335666665  2332  456778875221112333445543 3333


Q ss_pred             HHHhcCCCcEEEEeCCCCCC-------CHHH-----HHH-H---HHHHHHHHhcCCcEEEEEcCch
Q 006974          425 ILELVSRESLVLIDEIGSGT-------DPSE-----GVA-L---ATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~gl-------D~~~-----~~~-l---~~all~~l~~~~~~vii~TH~~  474 (623)
                      .+..-.++.|+++|=.++-.       +..+     ++. +   ...+...+.+.+..+|++.|-.
T Consensus       126 ~l~~~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~  191 (263)
T d1u94a1         126 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR  191 (263)
T ss_dssp             HHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred             HHHhcCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEE
Confidence            33334678999999886443       1111     111 1   2223444445678999999964

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.96  E-value=0.0015  Score=63.19  Aligned_cols=27  Identities=19%  Similarity=0.286  Sum_probs=23.9

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLA  374 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~  374 (623)
                      +.+| ++++|.|+.|+|||||+-.++..
T Consensus        32 ~~~G-~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          32 ARGG-EVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             BCTT-CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCC-eEEEEEeCCCCCHHHHHHHHHHh
Confidence            5678 99999999999999999998654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0011  Score=64.07  Aligned_cols=53  Identities=9%  Similarity=0.065  Sum_probs=34.7

Q ss_pred             HHHHHHhcCCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          422 IVDILELVSRESLVLIDEIGS-----GTDPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       422 l~~~~~l~~~~~LlLLDEp~~-----glD~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      +........++.+|++|-..+     --|......+...+.......++++|++.|..
T Consensus       123 ~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~  180 (274)
T d1nlfa_         123 FDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS  180 (274)
T ss_dssp             HHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             HHHHHHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhcc
Confidence            333344567899999997643     23555556666656555556688999998853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.0016  Score=62.78  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      +-+++.||.|+|||++.|.++
T Consensus        43 ~giLl~GppGtGKT~la~aia   63 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVA   63 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHH
Confidence            457999999999999999993

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.87  E-value=0.0046  Score=57.86  Aligned_cols=106  Identities=19%  Similarity=0.173  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      .+++++||||+||||.+--++ .+.-..+...++.++. .+.+-++++-   ..+|..-......+.+.. ..+.+....
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt-~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~-~~~~~~~~~   88 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPES-IRRRVEEKA   88 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHH-HHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc-ccchHHHHHHHHHHhcCCccccccccchhhH-HHHHHHHHH
Confidence            789999999999998876663 2222223334555553 5666666642   334443222222222221 112233334


Q ss_pred             hcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q 006974          428 LVSRESLVLIDEIGS-GTDPSEGVALATSILQYL  460 (623)
Q Consensus       428 l~~~~~LlLLDEp~~-glD~~~~~~l~~all~~l  460 (623)
                      ...+.+++|+|=+++ ..|......+.. +.+..
T Consensus        89 ~~~~~d~vlIDTaGr~~~d~~~~~el~~-~~~~~  121 (207)
T d1ls1a2          89 RLEARDLILVDTAGRLQIDEPLMGELAR-LKEVL  121 (207)
T ss_dssp             HHHTCCEEEEECCCCSSCCHHHHHHHHH-HHHHH
T ss_pred             hhccCcceeecccccchhhhhhHHHHHH-HHhhc
Confidence            567889999999885 556666666655 55443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.82  E-value=0.0092  Score=55.87  Aligned_cols=91  Identities=16%  Similarity=0.120  Sum_probs=48.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccHHHHHHHHHH
Q 006974          351 TRVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISRIVDIL  426 (623)
Q Consensus       351 ~~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~g~~rl~~~~  426 (623)
                      ..+++++||+|+||||++==++ ...-..+...++-.+. .+.+-++++-   ..+|..=........+..-+++ +...
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt-~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~-a~~~   89 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV-YRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR-GVEK   89 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC-SSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH-HHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec-cccchhHHHHHhccccCcceeecccchhhhHHHHH-HHHH
Confidence            3799999999999998865553 2222222334566654 5667677653   3344432222333333333332 2233


Q ss_pred             HhcCCCcEEEEeCCCCC
Q 006974          427 ELVSRESLVLIDEIGSG  443 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~g  443 (623)
                      ....+.+++|+|=||++
T Consensus        90 ~~~~~~d~IlIDTaGr~  106 (211)
T d1j8yf2          90 FLSEKMEIIIVDTAGRH  106 (211)
T ss_dssp             HHHTTCSEEEEECCCSC
T ss_pred             hhccCCceEEEecCCcC
Confidence            34578899999966653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.0088  Score=56.08  Aligned_cols=105  Identities=17%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      .+++++||||+||||.+==++ ...-..+...++-.+. .+.+-++++-   ..+|..=......+.+..- .+......
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt-~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~-~~~~~~~~   89 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAV-AFDAVAHA   89 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHH-HHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc-cccchhHHHHHHhhhcCccccccCCCCcHHHH-HHHHHHHH
Confidence            789999999999999865553 3222223334555554 5677777653   2344432212222222221 12223344


Q ss_pred             hcCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHH
Q 006974          428 LVSRESLVLIDEIGSGT-DPSEGVALATSILQY  459 (623)
Q Consensus       428 l~~~~~LlLLDEp~~gl-D~~~~~~l~~all~~  459 (623)
                      ...+.++||+|=||++- |......+.. +.+.
T Consensus        90 ~~~~~d~ilIDTaGr~~~d~~~~~el~~-~~~~  121 (213)
T d1vmaa2          90 LARNKDVVIIDTAGRLHTKKNLMEELRK-VHRV  121 (213)
T ss_dssp             HHTTCSEEEEEECCCCSCHHHHHHHHHH-HHHH
T ss_pred             HHcCCCEEEEeccccccchHHHHHHHHH-HHhh
Confidence            56788999999888544 4444444444 4443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00026  Score=62.95  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|||++|||||||++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L   22 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKL   22 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHH
Confidence            48999999999999999999

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0017  Score=62.99  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      +.+.+.||.|+|||++.+.++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHH
Confidence            567899999999999999993

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.74  E-value=0.0095  Score=57.89  Aligned_cols=123  Identities=20%  Similarity=0.206  Sum_probs=69.5

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH-hhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHH-HHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL-GLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHIS-RIVD  424 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i-gl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~  424 (623)
                      ++.| +++.|.||+|+||||++-.+ .-.+-......|+-.++.  +..  ..+..+|.+.+---....-+.++. .+..
T Consensus        57 ~~~g-~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~--~~~--e~a~~~GvD~d~il~~~~~~~E~~~~~~~  131 (269)
T d1mo6a1          57 LPRG-RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA--LDP--DYAKKLGVDTDSLLVSQPDTGEQALEIAD  131 (269)
T ss_dssp             BCSS-SEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC--CCH--HHHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             cccc-eeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCH--HHHHHhCCCHHHeEEecCCCHHHHHHHHH
Confidence            4567 89999999999999997555 222222222346666552  332  345666765332123344456554 4433


Q ss_pred             HHHhcCCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHH----HhcCCcEEEEEcCch
Q 006974          425 ILELVSRESLVLIDEIGSGTDPSE------------GVALATSILQY----LRDRVGLAVVTTHYA  474 (623)
Q Consensus       425 ~~~l~~~~~LlLLDEp~~glD~~~------------~~~l~~all~~----l~~~~~~vii~TH~~  474 (623)
                      .+..-.++.|+++|=.++-.-..+            ++.+....+..    +.+.+.++|++.|-.
T Consensus       132 ~l~~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~  197 (269)
T d1mo6a1         132 MLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLR  197 (269)
T ss_dssp             HHHHTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred             HHHhcCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhheee
Confidence            333456789999999987663211            12222222322    234577888888854

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00029  Score=63.11  Aligned_cols=20  Identities=40%  Similarity=0.554  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.+.|+||+|+|||||++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i   21 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKA   21 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHH
Confidence            46899999999999999999

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.001  Score=64.87  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHH-HHHHH--HHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGH-ISRIV--DILEL  428 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g-~~rl~--~~~~l  428 (623)
                      +.+.|.||.|+|||++.++++-.     .|..+.     .+.. ..+.             +...|. +.++.  +..+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~-----~~~~~~-----~~~~-~~l~-------------~~~~~~~~~~l~~~f~~A~   97 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE-----CQANFI-----SIKG-PELL-------------TMWFGESEANVREIFDKAR   97 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH-----TTCEEE-----EECH-HHHH-------------TSCTTTHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH-----hCCcEE-----EEEH-HHhh-------------hccccchHHHHHHHHHHHH
Confidence            56889999999999999999211     222111     1110 1111             122222 22333  33445


Q ss_pred             cCCCcEEEEeCCCC---------CCCHHHHHHHHHHHHHHHh----cCCcEEEEEcCchh
Q 006974          429 VSRESLVLIDEIGS---------GTDPSEGVALATSILQYLR----DRVGLAVVTTHYAD  475 (623)
Q Consensus       429 ~~~~~LlLLDEp~~---------glD~~~~~~l~~all~~l~----~~~~~vii~TH~~~  475 (623)
                      ...|.+|++||.-.         +-...+...+...++.++.    ..+..+|.||++.+
T Consensus        98 ~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~  157 (265)
T d1r7ra3          98 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD  157 (265)
T ss_dssp             HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCT
T ss_pred             hcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCch
Confidence            67899999999732         2222333334444555542    23467888999876

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.62  E-value=0.0055  Score=56.75  Aligned_cols=125  Identities=16%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhhhh--hhhceeecCCCCCCccHHHHHHHHcCCc---------------hhhh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLASLM--SKAGLYLPAKNHPRLPWFDLILADIGDH---------------QSLE  409 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~~~--a~~G~~vp~~~~~~l~~~d~i~~~ig~~---------------~~~~  409 (623)
                      +++| .++.|.|++|+|||||.-.++.....  ...+.|+..+..  ...+...+...+..               ....
T Consensus        23 i~~G-~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (242)
T d1tf7a1          23 LPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--PQDIIKNARSFGWDLAKLVDEGKLFILDASPDP   99 (242)
T ss_dssp             EETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--HHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCS
T ss_pred             CcCC-eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC--HHHHHHHHHHcCCChHHHHHhcchhhhhhccch
Confidence            6788 89999999999999998776332222  223455544321  11111111111110               0001


Q ss_pred             cccccccHHHH-H-HHHHHH--hcCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          410 QNLSTFSGHIS-R-IVDILE--LVSRESLVLIDEIGSGT----DPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       410 ~~~stfS~g~~-r-l~~~~~--l~~~~~LlLLDEp~~gl----D~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      .....++.... . +..+..  .-.+++++++|=.+.-.    +..........+...+++.++++++++|..
T Consensus       100 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (242)
T d1tf7a1         100 EGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI  172 (242)
T ss_dssp             SCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred             hhhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeeccc
Confidence            11122222111 1 122221  12478999999765432    334444455557777777889998888864

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.56  E-value=0.02  Score=53.25  Aligned_cols=106  Identities=16%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-hhhhhhhhceeecCCCCCCccHHHHHH---HHcCCchhhhcccccccHHHHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLG-LASLMSKAGLYLPAKNHPRLPWFDLIL---ADIGDHQSLEQNLSTFSGHISRIVDILE  427 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig-l~~~~a~~G~~vp~~~~~~l~~~d~i~---~~ig~~~~~~~~~stfS~g~~rl~~~~~  427 (623)
                      .+++++||||+||||.+==++ ...-..+...++..+. .+.+-++++-   ..+|..-......+.+..-.++ .....
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt-~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~-~~~~~   84 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT-FRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYD-AVQAM   84 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC-SSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHH-HHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc-ccccchhhHhhcccccCceEEeccCCccHHHHHHH-HHHHH
Confidence            799999999999999865553 2222223334566654 5677777653   2334321111111121111111 11122


Q ss_pred             hcCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHH
Q 006974          428 LVSRESLVLIDEIGSG-TDPSEGVALATSILQYL  460 (623)
Q Consensus       428 l~~~~~LlLLDEp~~g-lD~~~~~~l~~all~~l  460 (623)
                      ...+.++||+|=||++ .|...-..+.. +.+..
T Consensus        85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~-~~~~~  117 (207)
T d1okkd2          85 KARGYDLLFVDTAGRLHTKHNLMEELKK-VKRAI  117 (207)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHH-HHHHH
T ss_pred             HHCCCCEEEcCccccchhhHHHHHHHHH-HHHHh
Confidence            3457799999999965 46655555554 44433

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.54  E-value=0.00054  Score=62.51  Aligned_cols=21  Identities=43%  Similarity=0.786  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 006974          350 ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       350 g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      | ++++|+||+||||||+++.+
T Consensus         2 G-~iivl~GpsG~GK~tl~~~L   22 (182)
T d1znwa1           2 G-RVVVLSGPSAVGKSTVVRCL   22 (182)
T ss_dssp             C-CEEEEECSTTSSHHHHHHHH
T ss_pred             C-eEEEEECCCCCCHHHHHHHH
Confidence            5 79999999999999999988

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00057  Score=69.88  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=22.0

Q ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974          346 KVECETRVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       346 ~l~~g~~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      .+..+ .+.+|+|||||||||+|.+|.+
T Consensus        21 ~f~~~-~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          21 GFGES-NFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             ECTTC-SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eCCCC-CEEEEECCCCCCHHHHHHHHHH
Confidence            33434 4899999999999999999953

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.44  E-value=0.0026  Score=61.21  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .-++|.||.|+|||++.+.++
T Consensus        41 ~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            468899999999999999993

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.28  E-value=0.0009  Score=59.85  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+|++|||||||++.+
T Consensus         2 kii~I~G~~gSGKTTli~~l   21 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKW   21 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHH
Confidence            57899999999999999877

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.25  E-value=0.0011  Score=57.92  Aligned_cols=20  Identities=15%  Similarity=0.399  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+||.||||||+.+.+
T Consensus         3 klIii~G~pGsGKTTla~~L   22 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREF   22 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            68899999999999999976

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.19  E-value=0.0012  Score=58.77  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| ++++|+||.||||||+.+.+
T Consensus         3 ~g-~iI~l~G~~GsGKSTia~~L   24 (176)
T d1zp6a1           3 GG-NILLLSGHPGSGKSTIAEAL   24 (176)
T ss_dssp             TT-EEEEEEECTTSCHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            35 89999999999999999988

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0014  Score=58.08  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+||+||||||+.+.+
T Consensus         7 ~iivl~G~~GsGKsT~a~~L   26 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEV   26 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            89999999999999999998

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.00  E-value=0.0016  Score=57.37  Aligned_cols=20  Identities=40%  Similarity=0.700  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+||.||||||+.+.+
T Consensus         3 klI~i~G~~GsGKTTva~~L   22 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRL   22 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999988

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.99  E-value=0.0014  Score=58.39  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.++|+||.|+|||||.+.|
T Consensus         8 K~I~i~G~~GsGKTTla~~L   27 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKL   27 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            78999999999999999999

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.011  Score=56.88  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +-+.|.||.|+|||++.+.+
T Consensus        39 ~giLL~GppGtGKT~l~~al   58 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAV   58 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHH
Confidence            45799999999999999999

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0072  Score=57.05  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=26.8

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ....++|+||.-. +.......+.. +++.. ...+.+|++|++.+
T Consensus       130 ~~~~iiiide~d~-l~~~~~~~l~~-~~e~~-~~~~~~Il~tn~~~  172 (252)
T d1sxje2         130 HRYKCVIINEANS-LTKDAQAALRR-TMEKY-SKNIRLIMVCDSMS  172 (252)
T ss_dssp             -CCEEEEEECTTS-SCHHHHHHHHH-HHHHS-TTTEEEEEEESCSC
T ss_pred             CCceEEEeccccc-cccccchhhhc-ccccc-cccccceeeecccc
Confidence            4567999999965 66666555555 44432 22355778888764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.94  E-value=0.0017  Score=58.06  Aligned_cols=20  Identities=40%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+||.||||||+.+.+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L   21 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLA   21 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.81  E-value=0.0021  Score=56.92  Aligned_cols=20  Identities=25%  Similarity=0.692  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+||.||||||+.+.+
T Consensus         4 kiI~l~G~~GsGKsTva~~L   23 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCL   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            78999999999999999998

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.76  E-value=0.0021  Score=66.45  Aligned_cols=99  Identities=21%  Similarity=0.252  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH-h-hhhhhhhhceee--cCCCCCCccHHHHHHHHcCCchh-h-hcccccccHHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL-G-LASLMSKAGLYL--PAKNHPRLPWFDLILADIGDHQS-L-EQNLSTFSGHISRIVDI  425 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i-g-l~~~~a~~G~~v--p~~~~~~l~~~d~i~~~ig~~~~-~-~~~~stfS~g~~rl~~~  425 (623)
                      -+++|+||.||||||+|..+ . +.... +...-+  |-+  ..++         |..+. + .....+|...++     
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~~~-~~i~tiEdPiE--~~~~---------~~~q~~v~~~~~~~~~~~l~-----  221 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNSSE-RNILTVEDPIE--FDID---------GIGQTQVNPRVDMTFARGLR-----  221 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTT-SCEEEEESSCC--SCCS---------SSEEEECBGGGTBCHHHHHH-----
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcCCC-ceEEEeccCcc--cccC---------CCCeeeecCCcCCCHHHHHH-----
Confidence            49999999999999999998 1 11110 111111  111  1111         11110 0 011123333222     


Q ss_pred             HHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          426 LELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       426 ~~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      ..+=.+|+++++.|.-   |+........+     ...|..|+.|-|=.+
T Consensus       222 ~~lR~dPDvi~igEiR---d~~ta~~a~~a-----a~tGhlV~tTlHa~~  263 (401)
T d1p9ra_         222 AILRQDPDVVMVGEIR---DLETAQIAVQA-----SLTGHLVMSTLHTNT  263 (401)
T ss_dssp             HHGGGCCSEEEESCCC---SHHHHHHHHHH-----HHTTCEEEEEECCSS
T ss_pred             HHHhhcCCEEEecCcC---ChHHHHHHHHH-----HhcCCeEEEEeccCc
Confidence            2256899999999985   66665555443     334889999989754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.68  E-value=0.028  Score=54.46  Aligned_cols=116  Identities=12%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh-----hhhhhhhceeecCCCCCCccH----HHHHHHHcCCchhhhcccccc--cHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLGL-----ASLMSKAGLYLPAKNHPRLPW----FDLILADIGDHQSLEQNLSTF--SGHIS  420 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl-----~~~~a~~G~~vp~~~~~~l~~----~d~i~~~ig~~~~~~~~~stf--S~g~~  420 (623)
                      .+++|+|+-|.|||||.+.+--     .........++...+......    ...+....+..+..+ .++..  .....
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  123 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLN-FPSVEHVTSVVL  123 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTT-CCCCTTCCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcC-CccchhhhhHHH
Confidence            7999999999999999998711     111111223555444222221    223333333332222 22211  12222


Q ss_pred             HHHHHHH-hcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhh
Q 006974          421 RIVDILE-LVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCL  479 (623)
Q Consensus       421 rl~~~~~-l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~  479 (623)
                      +...+.. +...+-|++||-.=   |+   ..+     +++...++.+|+||-+.++...
T Consensus       124 ~~~~~~~~L~~kr~LlVLDDv~---~~---~~~-----~~~~~~~srilvTTR~~~v~~~  172 (277)
T d2a5yb3         124 KRMICNALIDRPNTLFVFDDVV---QE---ETI-----RWAQELRLRCLVTTRDVEISNA  172 (277)
T ss_dssp             HHHHHHHHTTSTTEEEEEEEEC---CH---HHH-----HHHHHTTCEEEEEESBGGGGGG
T ss_pred             HHHHHHHHhccCCeeEecchhh---HH---hhh-----hhhcccCceEEEEeehHHHHHh
Confidence            3223333 45667799999653   22   222     2233447789999998776543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.68  E-value=0.0028  Score=56.16  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++ -.++|+||.||||||+.+.+
T Consensus         4 k~-~~I~i~G~~GsGKTT~~~~L   25 (174)
T d1y63a_           4 KG-INILITGTPGTGKTSMAEMI   25 (174)
T ss_dssp             SS-CEEEEECSTTSSHHHHHHHH
T ss_pred             CC-CEEEEEeCCCCCHHHHHHHH
Confidence            34 57899999999999999999

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0022  Score=55.70  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.++|+||.||||||+-|.+
T Consensus         3 k~I~l~G~~GsGKSTvak~L   22 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQL   22 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            46788999999999999999

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.025  Score=52.81  Aligned_cols=26  Identities=27%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      +++| +++.|.||.|+|||||.-++..
T Consensus        34 ip~G-~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESM-AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSS-EEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCC-EEEEEECCCCCCHHHHHHHHHH
Confidence            6678 8999999999999999988843

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.64  E-value=0.0025  Score=59.88  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+||.|||||||++.+
T Consensus         2 vi~v~G~~GsGKTTLl~~l   20 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEF   20 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHH
Confidence            6899999999999999998

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0027  Score=59.31  Aligned_cols=21  Identities=19%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 006974          350 ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       350 g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      | .+++|+||+|+||||+++.+
T Consensus         2 G-~livi~GPSG~GK~tl~~~L   22 (205)
T d1s96a_           2 G-TLYIVSAPSGAGKSSLIQAL   22 (205)
T ss_dssp             C-CEEEEECCTTSCHHHHHHHH
T ss_pred             C-eEEEEECCCCCCHHHHHHHH
Confidence            6 79999999999999999988

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.64  E-value=0.003  Score=57.12  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 006974          350 ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       350 g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      |.-+++|+||.||||||+.+.+
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L   42 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQL   42 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            4357889999999999999998

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.53  E-value=0.0036  Score=55.38  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .++.|+|+.||||||+-+.+
T Consensus         5 ~g-~~I~l~G~~GsGKTTia~~L   26 (183)
T d1m8pa3           5 QG-FTIFLTGYMNSGKDAIARAL   26 (183)
T ss_dssp             CC-EEEEEECSTTSSHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            57 78999999999999999998

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.48  E-value=0.018  Score=53.83  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      +++| +++.|.||.|+|||||.-++.
T Consensus        33 lp~G-~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQ-AITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESS-EEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCC-EEEEEEcCCCCCHHHHHHHHH
Confidence            5678 899999999999999988873

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0031  Score=57.60  Aligned_cols=20  Identities=45%  Similarity=0.795  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +-++|+||+||||||+++.+
T Consensus         2 rpIvl~GpsG~GK~tl~~~L   21 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKL   21 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            45789999999999999988

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.33  E-value=0.0039  Score=55.80  Aligned_cols=20  Identities=20%  Similarity=0.420  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+|++||||||+.+.+
T Consensus         2 kiivi~G~~GsGKTT~~~~L   21 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKV   21 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999999

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.32  E-value=0.011  Score=54.92  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=27.2

Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          430 SRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       430 ~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      .+..++++||.- ++.+....+|.. +++... ....++++|+...
T Consensus        98 ~~~kiiiiDe~d-~~~~~~~~~Ll~-~le~~~-~~~~~~~~~~~~~  140 (227)
T d1sxjc2          98 KGFKLIILDEAD-AMTNAAQNALRR-VIERYT-KNTRFCVLANYAH  140 (227)
T ss_dssp             CSCEEEEETTGG-GSCHHHHHHHHH-HHHHTT-TTEEEEEEESCGG
T ss_pred             CCeEEEEEeccc-cchhhHHHHHHH-Hhhhcc-cceeeccccCcHH
Confidence            455799999985 567777777766 344322 2345667776643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.25  E-value=0.004  Score=54.89  Aligned_cols=19  Identities=37%  Similarity=0.419  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||+.+.+
T Consensus         6 ~I~i~G~pGsGKTTia~~L   24 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKEL   24 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4679999999999999988

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0044  Score=56.39  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.++|+||+|+||||+++.+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L   23 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTL   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHH
Confidence            67999999999999999987

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0053  Score=56.88  Aligned_cols=19  Identities=16%  Similarity=0.452  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+||.||||||+-+.+
T Consensus         4 iIgI~G~~gSGKSTla~~L   22 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKI   22 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999988

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0049  Score=56.48  Aligned_cols=19  Identities=42%  Similarity=0.767  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||+||||||+++.+
T Consensus         2 pIvl~GPsGsGK~tl~~~L   20 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKL   20 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            3689999999999999988

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.91  E-value=0.05  Score=50.14  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      +++| +++.|+||.|+|||||.-++.
T Consensus        31 i~~G-~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETG-SITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESS-SEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCC-eEEEEEcCCCCCHHHHHHHHH
Confidence            5678 899999999999999999883

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=0.0083  Score=54.11  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 006974          350 ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       350 g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ...+++++|+.||||||+.+.+
T Consensus        13 ~p~liil~G~pGsGKST~a~~l   34 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEH   34 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3479999999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.77  E-value=0.016  Score=54.16  Aligned_cols=101  Identities=14%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhhhhh-hhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974          353 VVVITGPNTGGKTASMKTLGLASLM-SKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR  431 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl~~~~-a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~  431 (623)
                      .+.|.||.|+|||-|+.++|--..- .....|++...     ....+...+.             .  ............
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-------------~--~~~~~~~~~~~~   97 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD-----FAQAMVEHLK-------------K--GTINEFRNMYKS   97 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH-----HHHHHHHHHH-------------H--TCHHHHHHHHHT
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHH-----HHHHHHHHHH-------------c--cchhhHHHHHhh
Confidence            3789999999999999999433211 11112332211     1111111110             0  011222233457


Q ss_pred             CcEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEcCch
Q 006974          432 ESLVLIDEIGSGT-DPSEGVALATSILQYLRDRVGLAVVTTHYA  474 (623)
Q Consensus       432 ~~LlLLDEp~~gl-D~~~~~~l~~all~~l~~~~~~vii~TH~~  474 (623)
                      .++|++|+...=. ++.....|.. +++.+.+.++.+|++|...
T Consensus        98 ~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2          98 VDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             CSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred             ccchhhhhhhhhcCchHHHHHHHH-HHHHHhhccceEEEecCCc
Confidence            8999999996543 4556666777 8888888888988888863

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.055  Score=50.82  Aligned_cols=42  Identities=21%  Similarity=0.076  Sum_probs=27.2

Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchh
Q 006974          431 RESLVLIDEIGSGTDPSEGVALATSILQYLRDRVGLAVVTTHYAD  475 (623)
Q Consensus       431 ~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~~vii~TH~~~  475 (623)
                      +..++||||.-. +++....+|.. +++.- ..+..+|++|++..
T Consensus       115 ~~kviiIde~d~-l~~~~q~~Llk-~lE~~-~~~~~~il~tn~~~  156 (239)
T d1njfa_         115 RFKVYLIDEVHM-LSRHSFNALLK-TLEEP-PEHVKFLLATTDPQ  156 (239)
T ss_dssp             SSEEEEEETGGG-SCHHHHHHHHH-HHHSC-CTTEEEEEEESCGG
T ss_pred             CCEEEEEECccc-CCHHHHHHHHH-HHhcC-CCCeEEEEEcCCcc
Confidence            456999999965 66766666655 33321 12457788888754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.58  E-value=0.032  Score=47.42  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=26.9

Q ss_pred             HhcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEc
Q 006974          427 ELVSRESLVLIDEIGSGTDPSEGVALATSILQYLRDRVG-LAVVTT  471 (623)
Q Consensus       427 ~l~~~~~LlLLDEp~~glD~~~~~~l~~all~~l~~~~~-~vii~T  471 (623)
                      ....+-+++|+||.= .++......+.. +++.+...+. .+|..|
T Consensus        90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~-~l~~~~~~~~~~~l~~T  133 (136)
T d1a1va1          90 CSGGAYDIIICDECH-STDATSILGIGT-VLDQAETAGARLVVLAT  133 (136)
T ss_dssp             GGGCCCSEEEEETTT-CCSHHHHHHHHH-HHHHTTTTTCSEEEEEE
T ss_pred             hhhhcCCEEEEeccc-ccCHHHHHHHHH-HHHHHHHCCCCcEEEEe
Confidence            355778999999994 467776666655 5555444332 344433

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.50  E-value=0.0082  Score=54.47  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      =++||||+.||||||+.+.+
T Consensus         4 ~IIgitG~~gSGKstva~~l   23 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALL   23 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999987

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.0057  Score=55.14  Aligned_cols=22  Identities=32%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .++.|+|+.||||||+-|.+
T Consensus        18 ~g-~vI~L~G~pGSGKTTiAk~L   39 (195)
T d1x6va3          18 RG-CTVWLTGLSGAGKTTVSMAL   39 (195)
T ss_dssp             CC-EEEEEESSCHHHHHHHHHHH
T ss_pred             CC-eEEEEECCCCCCHHHHHHHH
Confidence            46 68889999999999999999

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.01  Score=53.59  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      +.+| +++.|+||.|+|||||.-+++.
T Consensus        20 i~~G-~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETG-SITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETT-SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCC-EEEEEEeCCCCCHHHHHHHHHH
Confidence            5678 8999999999999999988843

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.37  E-value=0.093  Score=48.16  Aligned_cols=28  Identities=25%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhhhh
Q 006974          347 VECETRVVVITGPNTGGKTASMKTLGLAS  375 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~igl~~  375 (623)
                      +.+| +++.|+||.|+|||||.-.++...
T Consensus        31 l~~G-~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQ-SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETT-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCC-eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6678 999999999999999999995443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.034  Score=53.74  Aligned_cols=123  Identities=23%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHH-hcC
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILE-LVS  430 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~-l~~  430 (623)
                      .-++|+||.|.|||+++.-++--..   .| -+|... ....++     .+... .+-.+.+....=+.|+..++. +..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~---~~-~vp~~l-~~~~i~-----~l~~~-~liag~~~~g~~e~r~~~i~~~~~~  108 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV---QG-DVPEVM-ADCTIY-----SLDIG-SLLAGTKYRGDFEKRFKALLKQLEQ  108 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH---HT-CSCGGG-TTCEEE-----ECCCC----CCCCCSSCHHHHHHHHHHHHSS
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH---hC-Cccccc-ccceeE-----Eeeec-hHhccCccchhHHHHHHHHHHHhhc
Confidence            5678999999999999998732211   12 122221 011111     01111 122222222222335555554 333


Q ss_pred             -CCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCchhHHhhccccce
Q 006974          431 -RESLVLIDEIGS----GTDPSEGVALATSILQYLRDRVGLAVVTTHYADLSCLKDKDTR  485 (623)
Q Consensus       431 -~~~LlLLDEp~~----glD~~~~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~~~  485 (623)
                       ++.++++||+-.    |-...+...++..+.-+|.+....+|.+|..-+...+......
T Consensus       109 ~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~a  168 (268)
T d1r6bx2         109 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRA  168 (268)
T ss_dssp             SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTS
T ss_pred             cCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHH
Confidence             445777999522    2222234456664444666555678888877666665444443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.014  Score=54.32  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|-|+-||||||+.+.+
T Consensus         2 rG-~lI~ieG~dGsGKsT~~~~L   23 (209)
T d1nn5a_           2 RG-ALIVLEGVDRAGKSTQSRKL   23 (209)
T ss_dssp             CC-CEEEEEESTTSSHHHHHHHH
T ss_pred             Ce-eEEEEECCCCCCHHHHHHHH
Confidence            57 78999999999999999988

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.22  E-value=0.024  Score=56.27  Aligned_cols=100  Identities=19%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCCC
Q 006974          353 VVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSRE  432 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~~  432 (623)
                      +++++||.|+|||.+.+.++--     +|.-+|     .+.        +...+.+.+....   +++++..+...+..|
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~-----~~~~~~-----~~~--------~~~~~~~~~~~G~---~e~~~~~~f~~a~~~  183 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA-----LGGKDK-----YAT--------VRFGEPLSGYNTD---FNVFVDDIARAMLQH  183 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH-----HHTTSC-----CEE--------EEBSCSSTTCBCC---HHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCccHHHHHHHHHHH-----hcCCCC-----eEE--------EEhhHhhhcccch---HHHHHHHHHHHHhhc
Confidence            6677899999999999999322     110000     000        1111112223333   244555555545568


Q ss_pred             cEEEEeCCCC-------CCCHHHHHHHHHHHHHHH---h-cCCcEEEEEcCc
Q 006974          433 SLVLIDEIGS-------GTDPSEGVALATSILQYL---R-DRVGLAVVTTHY  473 (623)
Q Consensus       433 ~LlLLDEp~~-------glD~~~~~~l~~all~~l---~-~~~~~vii~TH~  473 (623)
                      .+|++||.-+       +.+..........++..+   . ..+..||.+|.-
T Consensus       184 ~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~  235 (321)
T d1w44a_         184 RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP  235 (321)
T ss_dssp             SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             cEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCC
Confidence            8999999833       222222112222233222   2 236788888884

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.13  E-value=0.011  Score=54.48  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -++||||+.||||||+.+.+
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999987

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.11  E-value=0.011  Score=55.26  Aligned_cols=20  Identities=30%  Similarity=0.451  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||+|+||||+.+.+
T Consensus        46 ~~lll~Gp~G~GKTtla~~i   65 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALAL   65 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            35789999999999999999

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.06  E-value=0.011  Score=52.74  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      +.++|+||.||||||+-|.++
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999993

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.97  E-value=0.012  Score=53.53  Aligned_cols=24  Identities=13%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +..+ .+++|+||.||||||.-+.|
T Consensus         5 ~~~~-~iI~l~G~pGSGKsT~a~~L   28 (194)
T d3adka_           5 LKKS-KIIFVVGGPGSGKGTQCEKI   28 (194)
T ss_dssp             HHTS-CEEEEEECTTSSHHHHHHHH
T ss_pred             ccCC-cEEEEECCCCCCHHHHHHHH
Confidence            3455 79999999999999999988

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.014  Score=55.04  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| +..+++|++|.|||||++.+
T Consensus        94 ~~-kt~~~~G~SGVGKSTLiN~L  115 (225)
T d1u0la2          94 KG-KISTMAGLSGVGKSSLLNAI  115 (225)
T ss_dssp             SS-SEEEEECSTTSSHHHHHHHH
T ss_pred             cC-CeEEEECCCCCCHHHHHHhh
Confidence            46 78999999999999999999

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.013  Score=58.54  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+++||||.|+|||||+..++
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHH
Confidence            789999999999999999984

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.84  E-value=0.015  Score=52.78  Aligned_cols=20  Identities=25%  Similarity=0.399  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.|
T Consensus         7 ~iI~i~G~pGSGKsT~a~~L   26 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANI   26 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999988

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.84  E-value=0.087  Score=49.16  Aligned_cols=20  Identities=25%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+||.|+||||++|.+
T Consensus        44 ~~lll~GppGtGKT~l~~~l   63 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKL   63 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHH
Confidence            57899999999999999998

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.014  Score=54.02  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++||||+.||||||+.+.+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            7899999999999999987

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.019  Score=52.11  Aligned_cols=20  Identities=25%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||.||||||+.+.|
T Consensus         9 ~iI~i~GppGSGKsT~a~~L   28 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKL   28 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            78999999999999999999

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.66  E-value=0.015  Score=51.46  Aligned_cols=18  Identities=28%  Similarity=0.431  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|+|+.||||||+-|.+
T Consensus         3 I~liG~~GsGKsTi~k~L   20 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARAL   20 (161)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            678899999999999999

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.65  E-value=0.016  Score=51.26  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l   33 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHML   33 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            56889999999999999999

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.027  Score=52.10  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+++.||.|+||||+.+.+
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~   44 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYAL   44 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHH
Confidence            46899999999999999998

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.017  Score=54.43  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      ..++|.||+|+||||+.++++
T Consensus        53 ~~lll~GPpG~GKTt~a~~la   73 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVA   73 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999994

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.43  E-value=0.018  Score=54.62  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|.||.|+||||+.+.+
T Consensus        33 ~~ilL~GpPGtGKT~la~~l   52 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAI   52 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            56889999999999999998

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.017  Score=53.73  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 006974          353 VVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .++|+||+|+||||+.++++
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~   54 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALT   54 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHH
Confidence            37899999999999999993

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.30  E-value=0.021  Score=49.10  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.++|||||++.+
T Consensus         2 KI~liG~~nvGKSSLln~l   20 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHML   20 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.26  E-value=0.02  Score=50.59  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 006974          354 VVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~ig  372 (623)
                      ++|+|+.|+||||+-|.++
T Consensus         4 IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5677999999999999993

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.021  Score=51.65  Aligned_cols=20  Identities=25%  Similarity=0.348  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++|+||.||||||..+.|
T Consensus         2 ~iI~i~GppGSGKsT~a~~L   21 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARI   21 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.08  E-value=0.021  Score=51.66  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.|+|||||++.+
T Consensus        24 ~~I~lvG~~n~GKSTLin~L   43 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSL   43 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHh
Confidence            35999999999999999999

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.08  E-value=0.017  Score=52.31  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++|.|+-||||||+++.+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L   29 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHF   29 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999998

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.02  E-value=0.023  Score=51.57  Aligned_cols=20  Identities=35%  Similarity=0.464  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++++|+.||||||+.+.|
T Consensus         3 ~li~l~GlpgsGKSTla~~L   22 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKL   22 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.88  E-value=0.026  Score=50.25  Aligned_cols=18  Identities=22%  Similarity=0.429  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|+||.||||||..+.|
T Consensus         3 I~i~G~pGSGKsT~a~~L   20 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKI   20 (182)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            679999999999999988

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.025  Score=51.97  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=20.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| ++++|-|+-||||||+++.+
T Consensus         1 rg-kfIviEG~dGsGKsT~~~~L   22 (210)
T d4tmka_           1 RS-KYIVIEGLEGAGKTTARNVV   22 (210)
T ss_dssp             CC-CEEEEEECTTSCHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHH
Confidence            36 78999999999999999998

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.81  E-value=0.03  Score=51.91  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..| .++.|+|.+||||||+-+.+
T Consensus        22 ~kg-~vIwltGlsGsGKTTia~~L   44 (208)
T d1m7ga_          22 QRG-LTIWLTGLSASGKSTLAVEL   44 (208)
T ss_dssp             SSC-EEEEEECSTTSSHHHHHHHH
T ss_pred             CCC-eEEEEECCCCCCHHHHHHHH
Confidence            456 79999999999999999998

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.79  E-value=0.017  Score=57.55  Aligned_cols=20  Identities=30%  Similarity=0.591  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .-++|+||-||||||+|+++
T Consensus       167 ~nili~G~tgSGKTT~l~al  186 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSI  186 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHH
T ss_pred             CCEEEEeeccccchHHHHHH
Confidence            45899999999999999999

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.76  E-value=0.14  Score=46.90  Aligned_cols=20  Identities=15%  Similarity=0.135  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .-+++.||||+||||+.+.+
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l   35 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLEL   35 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHH
Confidence            68899999999999999988

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.73  E-value=0.03  Score=50.49  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=18.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| -.++|+||.||||||.-+.|
T Consensus         2 ~~-~riil~G~pGSGKsT~a~~L   23 (190)
T d1ak2a1           2 KG-VRAVLLGPPGAGKGTQAPKL   23 (190)
T ss_dssp             CC-CEEEEECCTTSSHHHHHHHH
T ss_pred             Cc-cEEEEECCCCCCHHHHHHHH
Confidence            45 34568899999999999998

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=92.73  E-value=0.028  Score=48.32  Aligned_cols=19  Identities=26%  Similarity=0.508  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         2 kivlvG~~~vGKSsLi~~l   20 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKL   20 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3689999999999999998

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.68  E-value=0.025  Score=51.07  Aligned_cols=19  Identities=26%  Similarity=0.476  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|.||.||||||+.+.+
T Consensus         5 ~I~i~GppGsGKsT~a~~L   23 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELI   23 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999988

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.66  E-value=0.026  Score=52.71  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 006974          353 VVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+++.||.|+||||+.+.++
T Consensus        37 ~~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            47899999999999999983

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.59  E-value=0.037  Score=48.43  Aligned_cols=19  Identities=26%  Similarity=0.518  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l   22 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKF   22 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.47  E-value=0.029  Score=48.53  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         7 kI~ivG~~~vGKSSLi~~~   25 (169)
T d1upta_           7 RILILGLDGAGKTTILYRL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.40  E-value=0.03  Score=55.63  Aligned_cols=21  Identities=38%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 006974          352 RVVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+++||||.|+|||||+..++
T Consensus        52 ~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHH
Confidence            789999999999999999984

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.088  Score=48.23  Aligned_cols=117  Identities=19%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCC-CCccH--HHHHHHHcCCchhhhcccccccHHHH-HHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNH-PRLPW--FDLILADIGDHQSLEQNLSTFSGHIS-RIVDILE  427 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~-~~l~~--~d~i~~~ig~~~~~~~~~stfS~g~~-rl~~~~~  427 (623)
                      .-++|+||.|.|||++..-++.-..   .| -+|..-. ..+-.  ...+++          +.+ +-|+.. |+..++.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~---~~-~vp~~L~~~~i~~ld~~~LiA----------g~~-~rG~~E~rl~~il~  108 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII---NG-EVPEGLKGRRVLALDMGALVA----------GAK-YRGEFEERLKGVLN  108 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH---HT-CSCGGGTTCEEEEECHHHHHT----------TTC-SHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH---hC-CCCHHHcCceEEEeeHHHHhc----------cCC-ccHHHHHHHHHHHH
Confidence            5679999999999999988732211   12 2333210 11110  112221          122 234433 6666654


Q ss_pred             h--cCC-CcEEEEeCCCCCCCHHH---HHHHHHHHHHHHhcCCcEEEEEcCchhHHhhcccc
Q 006974          428 L--VSR-ESLVLIDEIGSGTDPSE---GVALATSILQYLRDRVGLAVVTTHYADLSCLKDKD  483 (623)
Q Consensus       428 l--~~~-~~LlLLDEp~~glD~~~---~~~l~~all~~l~~~~~~vii~TH~~~l~~~~~~~  483 (623)
                      -  ..+ +-+|++||+-.=++...   +..++..+.-+|.+....+|.+|..-+...+-...
T Consensus       109 e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d  170 (195)
T d1jbka_         109 DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKD  170 (195)
T ss_dssp             HHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTC
T ss_pred             HHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcC
Confidence            2  233 45899999855443322   12355655556666556778777766655544333

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.23  E-value=0.046  Score=55.03  Aligned_cols=20  Identities=40%  Similarity=0.622  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+||-|+||||++..+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            69999999999999998665

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.035  Score=50.78  Aligned_cols=20  Identities=35%  Similarity=0.617  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|.||.||||||.-+.|
T Consensus         4 piI~I~GppGSGKgT~ak~L   23 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAM   23 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999999

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.15  E-value=0.036  Score=49.59  Aligned_cols=19  Identities=21%  Similarity=0.373  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||..+.|
T Consensus         2 ~I~i~G~pGSGKsT~a~~L   20 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRI   20 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3678999999999999998

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.11  E-value=0.032  Score=49.55  Aligned_cols=18  Identities=22%  Similarity=0.475  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|+|+.++|||||++.+
T Consensus         3 I~lvG~~nvGKSsLin~l   20 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRL   20 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999999

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.11  E-value=0.038  Score=48.78  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.++|||||++.+
T Consensus         2 ~V~liG~~n~GKSsLi~~L   20 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKL   20 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4799999999999999998

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.04  E-value=0.016  Score=54.82  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| +..+++|++|.|||||++.+
T Consensus        96 ~~-~~~vl~G~SGVGKSSLiN~L  117 (231)
T d1t9ha2          96 QD-KTTVFAGQSGVGKSSLLNAI  117 (231)
T ss_dssp             TT-SEEEEEESHHHHHHHHHHHH
T ss_pred             cc-ceEEEECCCCccHHHHHHhh
Confidence            35 67899999999999999999

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.90  E-value=0.039  Score=50.32  Aligned_cols=19  Identities=32%  Similarity=0.385  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      -++|+|+.++|||||++.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l   20 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRL   20 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999998

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.038  Score=49.19  Aligned_cols=19  Identities=16%  Similarity=0.406  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||..+.|
T Consensus         2 ~I~i~G~pGSGKsT~~~~L   20 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFI   20 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3678999999999999998

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.88  E-value=0.036  Score=48.81  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|..|+|||||++.+
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl   35 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQF   35 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46889999999999999998

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.86  E-value=0.032  Score=49.89  Aligned_cols=18  Identities=22%  Similarity=0.326  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|+|+.++|||||++.+
T Consensus         4 VaiiG~~nvGKSSLin~L   21 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVV   21 (185)
T ss_dssp             EEEESSTTSSHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            799999999999999998

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.81  E-value=0.042  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +| .+++|-|+-||||||+.+.+
T Consensus         2 kG-k~I~iEG~DGsGKST~~~~L   23 (214)
T d1tmka_           2 RG-KLILIEGLDRTGKTTQCNIL   23 (214)
T ss_dssp             CC-CEEEEEESTTSSHHHHHHHH
T ss_pred             Ce-EEEEEECCCCCcHHHHHHHH
Confidence            57 89999999999999999988

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.81  E-value=0.04  Score=50.60  Aligned_cols=19  Identities=32%  Similarity=0.651  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|.||.||||||.-+.|
T Consensus         5 ~IaIdGp~GsGKgT~ak~L   23 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKII   23 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5678899999999999999

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.81  E-value=0.04  Score=51.70  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+ ++++|+||.|+|||||++.+
T Consensus        28 ~~-~~i~i~G~~G~GKTsLl~~~   49 (283)
T d2fnaa2          28 RA-PITLVLGLRRTGKSSIIKIG   49 (283)
T ss_dssp             CS-SEEEEEESTTSSHHHHHHHH
T ss_pred             cC-CEEEEEcCCCCcHHHHHHHH
Confidence            34 78999999999999999987

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.77  E-value=0.023  Score=55.55  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=15.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|++||||||+.+.+
T Consensus         5 pIIgIaG~SGSGKTTva~~l   24 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTF   24 (288)
T ss_dssp             CEEEEESCC---CCTHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHH
Confidence            58999999999999999988

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.042  Score=49.78  Aligned_cols=20  Identities=35%  Similarity=0.694  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.++|||||++.+
T Consensus         4 p~V~lvG~~n~GKTSLln~l   23 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLL   23 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.73  E-value=0.04  Score=48.29  Aligned_cols=19  Identities=21%  Similarity=0.378  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l   22 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVI   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4688999999999999988

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.031  Score=51.93  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|-|+-||||||+++.+
T Consensus         3 k~I~ieG~dGsGKST~~~~L   22 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNIL   22 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            78999999999999999998

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.57  E-value=0.045  Score=48.91  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||+.+.|
T Consensus         4 rIvl~G~pGSGKtT~a~~L   22 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNL   22 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3568899999999999999

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.042  Score=47.69  Aligned_cols=19  Identities=37%  Similarity=0.597  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.++|||||++.+
T Consensus         3 kI~lvG~~nvGKSsLin~l   21 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNAL   21 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999999

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.52  E-value=0.3  Score=40.33  Aligned_cols=21  Identities=19%  Similarity=0.148  Sum_probs=17.2

Q ss_pred             ccCCceEEEEEcCCCCCHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASM  368 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlL  368 (623)
                      +.+| +.++|.+|.|+|||+..
T Consensus         4 l~~~-~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKG-MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTT-CEEEECCCTTSSTTTTH
T ss_pred             HHcC-CcEEEEcCCCCChhHHH
Confidence            4567 78899999999999554

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.47  E-value=0.047  Score=49.63  Aligned_cols=19  Identities=26%  Similarity=0.532  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|.|+-||||||+++.+
T Consensus         2 lI~ieG~dGsGKST~~~~L   20 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKL   20 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.38  E-value=0.044  Score=50.75  Aligned_cols=19  Identities=37%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++.||.|+||||+.+.+
T Consensus        38 ~~ll~Gp~G~GKTt~a~~l   56 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCL   56 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHH
Confidence            3789999999999999998

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.25  E-value=0.047  Score=50.97  Aligned_cols=19  Identities=26%  Similarity=0.413  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++.||.|+||||+.+++
T Consensus        37 ~~Ll~GPpG~GKTtla~~l   55 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVI   55 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            4789999999999999999

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.15  E-value=0.053  Score=48.31  Aligned_cols=18  Identities=33%  Similarity=0.567  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|.||.||||||.-+.|
T Consensus         3 I~i~G~pGsGKsT~a~~L   20 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKL   20 (181)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            688899999999999998

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.054  Score=50.46  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 006974          350 ETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       350 g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      |.++++|-|+=||||||+++.+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L   22 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLL   22 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHH
Confidence            3578999999999999999999

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.02  E-value=0.052  Score=48.37  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.++|||||++.+
T Consensus        10 kV~iiG~~~~GKSTLin~l   28 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAI   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5799999999999999988

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.051  Score=53.52  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -+++|.|+.||||||+-+.+
T Consensus        81 ~iIGIaG~sgSGKSTla~~L  100 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVL  100 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCCCcHHHHHH
Confidence            58999999999999999998

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.87  E-value=0.061  Score=47.75  Aligned_cols=19  Identities=32%  Similarity=0.489  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+|+.|+|||||++.+
T Consensus         7 ~I~lvG~~~~GKSSLin~l   25 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNL   25 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7999999999999999998

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=90.71  E-value=0.061  Score=48.72  Aligned_cols=19  Identities=21%  Similarity=0.291  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+||.||||||+-+.|
T Consensus         8 rIiliG~PGSGKtT~a~~L   26 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRI   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            4678899999999999998

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.58  E-value=0.065  Score=49.99  Aligned_cols=20  Identities=15%  Similarity=0.503  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|||+-||||||..+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l   21 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFI   21 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999987

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=0.066  Score=47.15  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      +++|+|..++|||||++.+
T Consensus         7 ~I~iiG~~nvGKSSLin~L   25 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKL   25 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.10  E-value=0.07  Score=47.00  Aligned_cols=19  Identities=37%  Similarity=0.455  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~   22 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRY   22 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999997

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.062  Score=50.16  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|.=||||||||+.+
T Consensus         4 Pv~iitGFLGaGKTTll~~l   23 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHI   23 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHH
T ss_pred             CEEEEeeCCCCCHHHHHHHH
Confidence            58899999999999999988

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.03  E-value=0.071  Score=47.18  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~   24 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRF   24 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999987

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.03  E-value=0.072  Score=46.86  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l   25 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRY   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999987

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.92  E-value=0.054  Score=48.16  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|+|+.++|||||++.+
T Consensus         4 VaivG~~nvGKSTLin~L   21 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAM   21 (180)
T ss_dssp             EEEECCGGGCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999999

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.073  Score=46.63  Aligned_cols=19  Identities=32%  Similarity=0.394  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 Ki~viG~~~vGKTsli~~l   23 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQL   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999988

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.85  E-value=0.49  Score=44.86  Aligned_cols=20  Identities=20%  Similarity=0.263  Sum_probs=16.8

Q ss_pred             ccCCceEEEEEcCCCCCHHHH
Q 006974          347 VECETRVVVITGPNTGGKTAS  367 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTl  367 (623)
                      +.+| +.++|.+|.|||||+.
T Consensus         6 ~~~~-~~~lv~~~TGsGKT~~   25 (305)
T d2bmfa2           6 FRKK-RLTIMDLHPGAGKTKR   25 (305)
T ss_dssp             SSTT-CEEEECCCTTSSTTTT
T ss_pred             hhcC-CcEEEEECCCCCHHHH
Confidence            3467 8899999999999973

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=89.77  E-value=0.058  Score=48.01  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++++|+.|+|||||++.+
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46789999999999999998

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.74  E-value=0.075  Score=46.46  Aligned_cols=19  Identities=16%  Similarity=0.359  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         4 Ki~vvG~~~vGKTSli~~l   22 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRF   22 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999987

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.61  E-value=0.081  Score=51.44  Aligned_cols=20  Identities=20%  Similarity=0.461  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      =+++|.|+-|||||||-+.|
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHH
Confidence            38899999999999999877

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=89.59  E-value=0.078  Score=46.65  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++++|+.|+|||||++.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQL   36 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999998

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.44  E-value=0.051  Score=47.87  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.++|||||++.+
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L   36 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTL   36 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999999

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.23  E-value=0.091  Score=45.86  Aligned_cols=19  Identities=21%  Similarity=0.433  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl   22 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRY   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999877

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.14  E-value=0.085  Score=50.27  Aligned_cols=20  Identities=15%  Similarity=0.464  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|..|+|||||+++|
T Consensus        33 l~I~LvG~tg~GKSSliN~i   52 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSI   52 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHH
Confidence            46789999999999999999

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.08  E-value=0.097  Score=48.48  Aligned_cols=20  Identities=20%  Similarity=0.484  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      -.++|+|+.|+|||||++.+
T Consensus         7 ~KilllG~~~vGKTsll~~~   26 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQM   26 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.092  Score=46.80  Aligned_cols=19  Identities=21%  Similarity=0.226  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l   25 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRY   25 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999988

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.09  Score=46.23  Aligned_cols=19  Identities=26%  Similarity=0.321  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~   25 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQF   25 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999987

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.096  Score=46.20  Aligned_cols=19  Identities=21%  Similarity=0.319  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         5 KivvvG~~~vGKTsli~r~   23 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQF   23 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3689999999999999987

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=88.92  E-value=0.073  Score=46.94  Aligned_cols=19  Identities=26%  Similarity=0.485  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus        14 kIvlvG~~~vGKTSli~rl   32 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKL   32 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.12  Score=45.77  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.|+|||||++.+
T Consensus         3 ~KivvvG~~~vGKTsLi~~~   22 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVN   22 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHH
Confidence            35789999999999999987

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=0.11  Score=45.79  Aligned_cols=18  Identities=28%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+.|+|||||++.+
T Consensus         9 I~vvG~~~vGKSSli~~~   26 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRY   26 (174)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999887

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.20  E-value=0.078  Score=49.85  Aligned_cols=19  Identities=26%  Similarity=0.072  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      ++.|+||.|+||||+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l   66 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFT   66 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHH
Confidence            4567799999999999999

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.12  Score=45.15  Aligned_cols=19  Identities=21%  Similarity=0.319  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         6 KivlvG~~~vGKTsli~~~   24 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQF   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999987

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.12  Score=45.26  Aligned_cols=19  Identities=26%  Similarity=0.436  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l   25 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRF   25 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999998

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.06  E-value=0.12  Score=45.18  Aligned_cols=19  Identities=26%  Similarity=0.324  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         6 Ki~lvG~~~vGKTsli~rl   24 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRF   24 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999988

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.88  E-value=0.14  Score=45.15  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             ccCCceEEEEEcCCCCCHHHHHHHH
Q 006974          347 VECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       347 l~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..+| .++.|.|+=|||||||.|.+
T Consensus        30 ~~~g-~ii~L~G~LGaGKTtfvr~~   53 (158)
T d1htwa_          30 TEKA-IMVYLNGDLGAGKTTLTRGM   53 (158)
T ss_dssp             CSSC-EEEEEECSTTSSHHHHHHHH
T ss_pred             CCCC-eEEEEecCCCccHHHHHHHH
Confidence            3567 89999999999999999988

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.74  E-value=0.12  Score=46.51  Aligned_cols=19  Identities=16%  Similarity=0.326  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         8 KivvvG~~~vGKTsli~~l   26 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRF   26 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999988

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=0.13  Score=44.93  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      ..++|+|+.|+|||||++.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~   24 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQF   24 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHH
Confidence            46889999999999999997

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.60  E-value=0.14  Score=45.68  Aligned_cols=19  Identities=21%  Similarity=0.531  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=87.40  E-value=0.13  Score=50.39  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 006974          353 VVVITGPNTGGKTASMKTLG  372 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~ig  372 (623)
                      .+++.||.|+|||.+.|+++
T Consensus        51 ~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            46789999999999999994

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.15  Score=44.28  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~   20 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRF   20 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999998

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.16  Score=44.40  Aligned_cols=19  Identities=32%  Similarity=0.351  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         5 KivlvG~~~vGKTsLi~r~   23 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRY   23 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4689999999999999987

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.18  E-value=0.15  Score=44.31  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++++|+-|+|||||++.+
T Consensus         5 v~liG~~~vGKTsLl~~~   22 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRF   22 (165)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999999988

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.06  E-value=0.15  Score=44.60  Aligned_cols=19  Identities=21%  Similarity=0.298  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~   22 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRF   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3689999999999999987

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.04  E-value=0.15  Score=45.34  Aligned_cols=19  Identities=37%  Similarity=0.462  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|..|+|||||++.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l   22 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQY   22 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999987

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.01  E-value=0.2  Score=43.77  Aligned_cols=19  Identities=21%  Similarity=0.352  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~   23 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRF   23 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999987

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=87.00  E-value=0.14  Score=45.48  Aligned_cols=19  Identities=37%  Similarity=0.282  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      -++|+|+-.+|||||++.+
T Consensus         7 nIaiiG~~naGKSTL~n~L   25 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVL   25 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHH
Confidence            3899999999999999998

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.98  E-value=0.16  Score=44.17  Aligned_cols=19  Identities=32%  Similarity=0.373  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~   23 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999988

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.68  E-value=0.15  Score=44.69  Aligned_cols=19  Identities=16%  Similarity=0.370  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|..|+|||||++.+
T Consensus         7 KI~lvG~~~vGKTsll~~~   25 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQF   25 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3789999999999999987

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.67  E-value=0.12  Score=45.59  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~   23 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRH   23 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTT
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4788999999999999987

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.15  Score=44.83  Aligned_cols=19  Identities=26%  Similarity=0.326  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~   26 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQF   26 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            5789999999999999987

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=86.43  E-value=0.2  Score=45.05  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=18.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .-++|+||.|+||||+.-.+
T Consensus        14 ~g-~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2          14 FG-VGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             TT-EEEEEEESSSSSHHHHHHHH
T ss_pred             CC-EEEEEEcCCCCCHHHHHHHH
Confidence            46 78999999999999987655

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.34  E-value=0.19  Score=44.02  Aligned_cols=19  Identities=26%  Similarity=0.288  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||+|++.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~   22 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRF   22 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=0.17  Score=44.25  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         3 Ki~lvG~~~vGKTsLi~~~   21 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIF   21 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            3689999999999999998

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.21  E-value=0.18  Score=44.15  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|..|+|||||++.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l   26 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRF   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4689999999999999998

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.92  E-value=0.19  Score=43.99  Aligned_cols=19  Identities=26%  Similarity=0.389  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~   26 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRF   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4799999999999999986

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=0.2  Score=44.03  Aligned_cols=19  Identities=26%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|..|+|||||++.+
T Consensus         5 Kv~lvG~~~vGKTsLi~~~   23 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIF   23 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999988

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.85  E-value=0.06  Score=46.58  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.++|||||++.+
T Consensus         2 kI~liG~~n~GKSSLin~l   20 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRL   20 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999999

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=85.82  E-value=0.23  Score=44.52  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=18.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .-++|+|+.|+||||+.-.+
T Consensus        13 ~g-~gvl~~G~sG~GKStlal~l   34 (176)
T d1kkma_          13 YG-LGVLITGDSGVGKSETALEL   34 (176)
T ss_dssp             TT-EEEEEECCTTSCHHHHHHHH
T ss_pred             CC-EEEEEEeCCCCCHHHHHHHH
Confidence            35 78999999999999987554

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.21  Score=44.03  Aligned_cols=19  Identities=21%  Similarity=0.387  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l   27 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRF   27 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999987

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.22  Score=48.22  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=27.5

Q ss_pred             cccccccccCCceEEEEEcCCCCCHHHHHHHHhh
Q 006974          340 PVPIDIKVECETRVVVITGPNTGGKTASMKTLGL  373 (623)
Q Consensus       340 ~v~i~l~l~~g~~~~~I~GpNgsGKSTlLk~igl  373 (623)
                      .++.=+.+..| +..+|.|+.|+|||||+..+..
T Consensus        33 ~ID~l~PigrG-Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          33 VLDLASPIGRG-QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHHHHSCCBTT-CEEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeecccccCC-CeeeEeCCCCCCHHHHHHHHHH
Confidence            34555677889 8999999999999999999843

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.34  E-value=0.2  Score=44.13  Aligned_cols=19  Identities=21%  Similarity=0.504  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         4 KivllG~~~vGKTsl~~r~   22 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQM   22 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999987

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=0.21  Score=43.52  Aligned_cols=19  Identities=26%  Similarity=0.345  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||+|++.+
T Consensus         5 KivvvG~~~vGKTsli~r~   23 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999997

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=85.32  E-value=0.21  Score=44.53  Aligned_cols=22  Identities=32%  Similarity=0.308  Sum_probs=18.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Q 006974          349 CETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       349 ~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .| .-++|+|+.|+||||+.-.+
T Consensus        14 ~g-~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          14 YG-VGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             TT-EEEEEEESTTSSHHHHHHHH
T ss_pred             CC-EEEEEEeCCCCCHHHHHHHH
Confidence            46 78999999999999987443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.23  Score=43.93  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         7 KivviG~~~vGKTsli~~~   25 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISY   25 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999987

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.89  E-value=0.23  Score=44.04  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|..|+|||+|++.+
T Consensus         4 KivliG~~~vGKTsli~r~   22 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVF   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999977

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.68  E-value=0.24  Score=45.90  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+|...+|||||++.+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L   25 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHI   25 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHH
Confidence            46999999999999999998

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=0.23  Score=43.97  Aligned_cols=19  Identities=16%  Similarity=0.340  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|+.|+|||||++.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~   25 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRF   25 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999987

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=84.07  E-value=0.28  Score=42.88  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         6 KivlvG~~~vGKTsli~~~   24 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQF   24 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            5789999999999999987

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.95  E-value=0.26  Score=43.13  Aligned_cols=19  Identities=26%  Similarity=0.342  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++++|..|+|||||++.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~   24 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQF   24 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4678899999999999987

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.94  E-value=1.6  Score=40.67  Aligned_cols=94  Identities=18%  Similarity=0.129  Sum_probs=46.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhhhhhhhhceeecCCCCCCccHHHHHHHHcCCchhhhcccccccHHHHHHHHHHHhcCC
Q 006974          352 RVVVITGPNTGGKTASMKTLGLASLMSKAGLYLPAKNHPRLPWFDLILADIGDHQSLEQNLSTFSGHISRIVDILELVSR  431 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~igl~~~~a~~G~~vp~~~~~~l~~~d~i~~~ig~~~~~~~~~stfS~g~~rl~~~~~l~~~  431 (623)
                      .-+.|+|+.|+||+++-+.|.-....+.... +.... ..++.....-..+|...........---|      ++..+ +
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~-~~~~~-~~~~~~~~~~~lfg~~~~~~~~~~~~~~g------~l~~a-~   94 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKLSDRSKEPF-VALNV-ASIPRDIFEAELFGYEKGAFTGAVSSKEG------FFELA-D   94 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHHSTTTTSCE-EEEET-TTSCHHHHHHHHHCBCTTSSTTCCSCBCC------HHHHT-T
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcCCccccc-ccchh-hhhhhcccHHHhcCcccCCcCCcccccCC------HHHcc-C
Confidence            3578999999999999999933222222222 22111 22332211112233322111111000001      11222 4


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHH
Q 006974          432 ESLVLIDEIGSGTDPSEGVALATS  455 (623)
Q Consensus       432 ~~LlLLDEp~~glD~~~~~~l~~a  455 (623)
                      ...|++||+ -.+++.....|...
T Consensus        95 gGtL~l~~i-~~L~~~~Q~~L~~~  117 (247)
T d1ny5a2          95 GGTLFLDEI-GELSLEAQAKLLRV  117 (247)
T ss_dssp             TSEEEEESG-GGCCHHHHHHHHHH
T ss_pred             CCEEEEeCh-HhCCHHHHHHHHHH
Confidence            456888998 46788888877773

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=0.27  Score=43.73  Aligned_cols=19  Identities=26%  Similarity=0.387  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus        11 Ki~lvG~~~vGKTsLi~r~   29 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSY   29 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3789999999999999987

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.70  E-value=0.24  Score=50.30  Aligned_cols=19  Identities=37%  Similarity=0.566  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      -++|+|..|+|||||++.+
T Consensus        58 ~Iai~G~~n~GKSSLiNaL   76 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTL   76 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999999

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.49  E-value=0.26  Score=43.97  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|+.|+|||||++.+
T Consensus         5 KvvllG~~~vGKTSli~r~   23 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISY   23 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4789999999999999887

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.04  E-value=0.28  Score=43.36  Aligned_cols=19  Identities=21%  Similarity=0.499  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 006974          353 VVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       353 ~~~I~GpNgsGKSTlLk~i  371 (623)
                      .++|+|..|+|||||++.+
T Consensus         4 Kiv~lG~~~vGKTsll~r~   22 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQM   22 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.02  E-value=0.28  Score=47.20  Aligned_cols=20  Identities=40%  Similarity=0.446  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 006974          352 RVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       352 ~~~~I~GpNgsGKSTlLk~i  371 (623)
                      .+++|+||-++||||||+.+
T Consensus        33 ~vvsi~G~~~sGKS~llN~l   52 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKL   52 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999998

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.98  E-value=0.22  Score=43.70  Aligned_cols=18  Identities=22%  Similarity=0.396  Sum_probs=8.3

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 006974          354 VVITGPNTGGKTASMKTL  371 (623)
Q Consensus       354 ~~I~GpNgsGKSTlLk~i  371 (623)
                      ++|+|.-|+|||||++.+
T Consensus         9 i~vvG~~~vGKTsLi~~l   26 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRF   26 (173)
T ss_dssp             EEEECCCCC---------
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            689999999999999877

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=80.37  E-value=0.45  Score=47.48  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             cCCceEEEEEcCCCCCHHHHHHHH
Q 006974          348 ECETRVVVITGPNTGGKTASMKTL  371 (623)
Q Consensus       348 ~~g~~~~~I~GpNgsGKSTlLk~i  371 (623)
                      +.+ +.+++.||.|+|||++.+.+
T Consensus       152 ~~~-~~~~~~g~~~~gk~~~~~~~  174 (362)
T d1svma_         152 PKK-RYWLFKGPIDSGKTTLAAAL  174 (362)
T ss_dssp             TTC-CEEEEECSTTSSHHHHHHHH
T ss_pred             CCc-CeEEEECCCCCCHHHHHHHH
Confidence            445 79999999999999999998