Citrus Sinensis ID: 007002
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | 2.2.26 [Sep-21-2011] | |||||||
| Q5YLB4 | 731 | DNA gyrase subunit B, chl | N/A | no | 1.0 | 0.850 | 0.868 | 0.0 | |
| Q94BZ7 | 732 | DNA gyrase subunit B, mit | yes | no | 1.0 | 0.849 | 0.842 | 0.0 | |
| Q9SS38 | 730 | DNA gyrase subunit B, chl | no | no | 1.0 | 0.852 | 0.840 | 0.0 | |
| Q5NBJ3 | 729 | DNA gyrase subunit B, chl | yes | no | 0.998 | 0.851 | 0.810 | 0.0 | |
| P77993 | 636 | DNA gyrase subunit B OS=T | yes | no | 0.972 | 0.951 | 0.522 | 0.0 | |
| P05652 | 638 | DNA gyrase subunit B OS=B | yes | no | 0.977 | 0.952 | 0.508 | 1e-177 | |
| P94604 | 637 | DNA gyrase subunit B OS=C | yes | no | 0.971 | 0.948 | 0.516 | 1e-177 | |
| O50627 | 637 | DNA gyrase subunit B OS=B | yes | no | 0.975 | 0.952 | 0.514 | 1e-174 | |
| Q8CQK4 | 643 | DNA gyrase subunit B OS=S | yes | no | 0.977 | 0.945 | 0.521 | 1e-171 | |
| Q5HK03 | 643 | DNA gyrase subunit B OS=S | yes | no | 0.977 | 0.945 | 0.521 | 1e-171 |
| >sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1 | Back alignment and function desciption |
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Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/622 (86%), Positives = 591/622 (95%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTGPRGLHHLVYEILDNAVDEAQAG+A+ I+V L ADNSVS+ADNGRGIP +LHP
Sbjct: 110 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHPV 169
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T KS+LETVLTVLHAGGKFGGSSSGY+VSGGLHGVGLSVVNALS++LEVT+WRDG EY Q
Sbjct: 170 TKKSSLETVLTVLHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQ 229
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
KYSRGKP+TTL CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELAFLNP
Sbjct: 230 KYSRGKPITTLICHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNP 289
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
+LTIAL+KED DPEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITID+AL
Sbjct: 290 ELTIALKKEDIDPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMAL 349
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
QWCSDAYSDTMLGYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLSGEHV
Sbjct: 350 QWCSDAYSDTMLGYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHV 409
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 360
REGLTC+ISV+VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS
Sbjct: 410 REGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 469
Query: 361 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
L+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGSAKQG
Sbjct: 470 LNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQG 529
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYHKIII
Sbjct: 530 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIII 589
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
LTDADVDGAHIRTLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAELKKV
Sbjct: 590 LTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKV 649
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
+ SFPSNA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSLMG+R
Sbjct: 650 QRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSR 709
Query: 601 VDTRKELIQNAANLVNLDHLDI 622
VD RK+LIQN+A+++NL+ LDI
Sbjct: 710 VDIRKQLIQNSASMMNLEQLDI 731
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Seems to play a critical role in chloroplast nucleoid partitioning by regulating DNA topology. DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. Nicotiana benthamiana (taxid: 4100) EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3 |
| >sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana GN=GYRBM PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana GN=GYRBC PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GYRB PE=2 SV=1 | Back alignment and function description |
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| >sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2 | Back alignment and function description |
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| >sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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| >sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB PE=3 SV=2 | Back alignment and function description |
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| >sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| 255562314 | 732 | DNA gyrase subunit B, putative [Ricinus | 1.0 | 0.849 | 0.871 | 0.0 | |
| 224086827 | 653 | predicted protein [Populus trichocarpa] | 1.0 | 0.952 | 0.856 | 0.0 | |
| 297739950 | 707 | unnamed protein product [Vitis vinifera] | 1.0 | 0.879 | 0.860 | 0.0 | |
| 225441215 | 719 | PREDICTED: DNA gyrase subunit B, chlorop | 1.0 | 0.865 | 0.860 | 0.0 | |
| 75288399 | 731 | RecName: Full=DNA gyrase subunit B, chlo | 1.0 | 0.850 | 0.868 | 0.0 | |
| 356504692 | 726 | PREDICTED: DNA gyrase subunit B, chlorop | 1.0 | 0.856 | 0.844 | 0.0 | |
| 224139720 | 700 | predicted protein [Populus trichocarpa] | 0.987 | 0.877 | 0.848 | 0.0 | |
| 356571931 | 724 | PREDICTED: DNA gyrase subunit B, chlorop | 1.0 | 0.859 | 0.842 | 0.0 | |
| 297810505 | 729 | hypothetical protein ARALYDRAFT_487191 [ | 1.0 | 0.853 | 0.840 | 0.0 | |
| 18414465 | 732 | DNA gyrase subunit B [Arabidopsis thalia | 1.0 | 0.849 | 0.842 | 0.0 |
| >gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis] gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/622 (87%), Positives = 592/622 (95%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTGPRGLHHLVYEILDNA+DEAQAGYAS ++V L +DNSVS++DNGRGIP DLHP
Sbjct: 111 MYIGSTGPRGLHHLVYEILDNAIDEAQAGYASRVDVILHSDNSVSISDNGRGIPTDLHPV 170
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T KSALETVLTVLHAGGKFGGS+SGYSVSGGLHGVGLSVVNALSE LEVTVWRDGMEY Q
Sbjct: 171 TKKSALETVLTVLHAGGKFGGSNSGYSVSGGLHGVGLSVVNALSEGLEVTVWRDGMEYRQ 230
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+YSRG PVT L CH L V+S+DRQGT +RFWPDK+VFTTAI+FD+NTIAGR+RELAFLNP
Sbjct: 231 RYSRGNPVTILMCHSLAVESRDRQGTCVRFWPDKEVFTTAIEFDYNTIAGRVRELAFLNP 290
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
KLTI L+KED+DPEKNQY+EYF+AGGL EYV+WLNTDKKPLHDVVGF K++DGITID+AL
Sbjct: 291 KLTITLKKEDNDPEKNQYDEYFYAGGLIEYVKWLNTDKKPLHDVVGFGKEIDGITIDMAL 350
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
QWCSDAYSDT+LGYANSIRTIDGGTHI+G KASLTRTLNSLGKKSK +K+KDI+LSGEHV
Sbjct: 351 QWCSDAYSDTILGYANSIRTIDGGTHIDGFKASLTRTLNSLGKKSKIIKEKDINLSGEHV 410
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 360
REGLTCI+SV+VP+PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS
Sbjct: 411 REGLTCIVSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 470
Query: 361 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
L+ALKAALAAK+AR+LVRQKSVLR+SSLPGKLADCSST PEESEIFIVEGDSAGGSAKQG
Sbjct: 471 LNALKAALAAKKARELVRQKSVLRTSSLPGKLADCSSTNPEESEIFIVEGDSAGGSAKQG 530
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYHKIII
Sbjct: 531 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIII 590
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
LTDADVDGAHIRTLLLTFF+RYQK LF+EGCIYVGVPPLYKVERGKQV YCYD+AELKK+
Sbjct: 591 LTDADVDGAHIRTLLLTFFFRYQKALFEEGCIYVGVPPLYKVERGKQVYYCYDEAELKKL 650
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
+SSFP NA Y+IQRFKGLGEMMP+QLWETT++PEQR+LKQLV+EDAAEANVVFSSLMGAR
Sbjct: 651 RSSFPQNASYNIQRFKGLGEMMPLQLWETTMDPEQRLLKQLVVEDAAEANVVFSSLMGAR 710
Query: 601 VDTRKELIQNAANLVNLDHLDI 622
VD RKELIQ++A VN+D LDI
Sbjct: 711 VDVRKELIQSSARAVNIDLLDI 732
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225441215|ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|75288399|sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana] | Back alignment and taxonomy information |
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| >gi|356504692|ref|XP_003521129.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa] gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356571931|ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18414465|ref|NP_568133.1| DNA gyrase subunit B [Arabidopsis thaliana] gi|75165162|sp|Q94BZ7.1|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana] gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana] gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| TAIR|locus:2146698 | 732 | GYRB2 "DNA GYRASE B2" [Arabido | 1.0 | 0.849 | 0.773 | 3.6e-263 | |
| UNIPROTKB|Q5NBJ3 | 729 | GYRB "DNA gyrase subunit B, ch | 0.998 | 0.851 | 0.737 | 2.4e-250 | |
| UNIPROTKB|Q7NHM9 | 644 | gyrB "DNA gyrase subunit B" [G | 0.988 | 0.954 | 0.534 | 4.7e-174 | |
| UNIPROTKB|A8IIG8 | 649 | TOP3 "DNA gyrase subunit B-lik | 0.998 | 0.956 | 0.518 | 3.1e-163 | |
| TIGR_CMR|CHY_2705 | 635 | CHY_2705 "DNA gyrase, B subuni | 0.971 | 0.951 | 0.486 | 1.7e-153 | |
| UNIPROTKB|P05652 | 638 | gyrB "DNA gyrase subunit B" [B | 0.977 | 0.952 | 0.458 | 1.5e-147 | |
| UNIPROTKB|P77993 | 636 | gyrB "DNA gyrase subunit B" [T | 0.971 | 0.949 | 0.478 | 2.4e-147 | |
| UNIPROTKB|Q8TQG0 | 634 | gyrB "DNA gyrase subunit B" [M | 0.972 | 0.954 | 0.485 | 2.2e-146 | |
| TIGR_CMR|BA_0005 | 640 | BA_0005 "DNA gyrase, B subunit | 0.972 | 0.945 | 0.469 | 9.3e-146 | |
| UNIPROTKB|Q8A277 | 653 | gyrB "DNA gyrase subunit B" [B | 0.979 | 0.932 | 0.448 | 1.3e-137 |
| TAIR|locus:2146698 GYRB2 "DNA GYRASE B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2532 (896.4 bits), Expect = 3.6e-263, P = 3.6e-263
Identities = 481/622 (77%), Positives = 530/622 (85%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD SVSV DNGRGIP DLHPA
Sbjct: 111 MYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHPA 170
Query: 61 TNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQ 120
T KS+LETVLTVLHA NALSE+LEV+VWRDGME+ Q
Sbjct: 171 TKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQ 230
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAFLNP
Sbjct: 231 NYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNP 290
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
K+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D+AL
Sbjct: 291 KVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVDVAL 350
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSGEHV
Sbjct: 351 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHV 410
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXX 360
REGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+
Sbjct: 411 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKS 470
Query: 361 XXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
VR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSAKQG
Sbjct: 471 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQG 530
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHKIII
Sbjct: 531 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIII 590
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
LTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA+LKK+
Sbjct: 591 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKI 650
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSSLMGAR
Sbjct: 651 TSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGAR 710
Query: 601 VDTRKELIQNAANLVNLDHLDI 622
VD RKELI+NAA +NL LDI
Sbjct: 711 VDVRKELIKNAATRINLQRLDI 732
|
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| UNIPROTKB|Q5NBJ3 GYRB "DNA gyrase subunit B, chloroplastic/mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7NHM9 gyrB "DNA gyrase subunit B" [Gloeobacter violaceus PCC 7421 (taxid:251221)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A8IIG8 TOP3 "DNA gyrase subunit B-like protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_2705 CHY_2705 "DNA gyrase, B subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P05652 gyrB "DNA gyrase subunit B" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P77993 gyrB "DNA gyrase subunit B" [Thermotoga maritima MSB8 (taxid:243274)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8TQG0 gyrB "DNA gyrase subunit B" [Methanosarcina acetivorans C2A (taxid:188937)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_0005 BA_0005 "DNA gyrase, B subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8A277 gyrB "DNA gyrase subunit B" [Bacteroides thetaiotaomicron VPI-5482 (taxid:226186)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C5C5 | GYRB_MYCTU | 5, ., 9, 9, ., 1, ., 3 | 0.4495 | 0.9758 | 0.8992 | yes | no |
| Q9ZFK1 | GYRB_BORHE | 5, ., 9, 9, ., 1, ., 3 | 0.4758 | 0.9758 | 0.9574 | yes | no |
| P0A4M0 | GYRB_STRR6 | 5, ., 9, 9, ., 1, ., 3 | 0.4728 | 0.9758 | 0.9367 | yes | no |
| P22447 | GYRB_MYCPN | 5, ., 9, 9, ., 1, ., 3 | 0.4611 | 0.9758 | 0.9338 | yes | no |
| P77993 | GYRB_THEMA | 5, ., 9, 9, ., 1, ., 3 | 0.5222 | 0.9726 | 0.9512 | yes | no |
| Q9X3Y6 | GYRB_BACAN | 5, ., 9, 9, ., 1, ., 3 | 0.5064 | 0.9726 | 0.9453 | yes | no |
| O67137 | GYRB_AQUAE | 5, ., 9, 9, ., 1, ., 3 | 0.5092 | 0.8424 | 0.6616 | yes | no |
| P21558 | GYRB_HALL2 | 5, ., 9, 9, ., 1, ., 3 | 0.5024 | 0.9710 | 0.9452 | N/A | no |
| Q5HK03 | GYRB_STAEQ | 5, ., 9, 9, ., 1, ., 3 | 0.5218 | 0.9774 | 0.9455 | yes | no |
| Q9SS38 | GYRBP_ARATH | 5, ., 9, 9, ., 1, ., 3 | 0.8408 | 1.0 | 0.8520 | no | no |
| P33769 | GYRB_BORBU | 5, ., 9, 9, ., 1, ., 3 | 0.4808 | 0.9694 | 0.9511 | yes | no |
| P05652 | GYRB_BACSU | 5, ., 9, 9, ., 1, ., 3 | 0.5080 | 0.9774 | 0.9529 | yes | no |
| O08399 | GYRB_TREPA | 5, ., 9, 9, ., 1, ., 3 | 0.4976 | 0.9662 | 0.9434 | yes | no |
| Q6GD85 | GYRB_STAAS | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | yes | no |
| Q8CQK4 | GYRB_STAES | 5, ., 9, 9, ., 1, ., 3 | 0.5218 | 0.9774 | 0.9455 | yes | no |
| Q5YLB4 | GYRB_NICBE | 5, ., 9, 9, ., 1, ., 3 | 0.8681 | 1.0 | 0.8508 | N/A | no |
| P47249 | GYRB_MYCGE | 5, ., 9, 9, ., 1, ., 3 | 0.4555 | 0.9774 | 0.9353 | yes | no |
| P0DG05 | GYRB_STRPQ | 5, ., 9, 9, ., 1, ., 3 | 0.4816 | 0.9774 | 0.9353 | yes | no |
| P43053 | GYRB_MYCHP | 5, ., 9, 9, ., 1, ., 3 | 0.4600 | 0.9726 | 0.9336 | yes | no |
| P0A4L9 | GYRB_STRPN | 5, ., 9, 9, ., 1, ., 3 | 0.4728 | 0.9758 | 0.9367 | yes | no |
| P0A0K7 | GYRB_STAAW | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | yes | no |
| P0A0K8 | GYRB_STAAU | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | yes | no |
| O50627 | GYRB_BACHD | 5, ., 9, 9, ., 1, ., 3 | 0.5145 | 0.9758 | 0.9529 | yes | no |
| Q59533 | GYRB_MYCLE | 5, ., 9, 9, ., 1, ., 3 | 0.4542 | 0.9790 | 0.8982 | yes | no |
| P66936 | GYRB_STAAM | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | yes | no |
| P66937 | GYRB_STAAN | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | yes | no |
| P47720 | GYRB_MYCGA | 5, ., 9, 9, ., 1, ., 3 | 0.4643 | 0.9742 | 0.9351 | yes | no |
| O29720 | GYRB_ARCFU | 5, ., 9, 9, ., 1, ., 3 | 0.4959 | 0.9662 | 0.9509 | yes | no |
| Q2FKQ1 | GYRB_STAA3 | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | N/A | no |
| A5TY73 | GYRB_MYCTA | 5, ., 9, 9, ., 1, ., 3 | 0.4495 | 0.9758 | 0.8992 | yes | no |
| D4GZ01 | GYRB_HALVD | 5, ., 9, 9, ., 1, ., 3 | 0.5056 | 0.9710 | 0.9452 | yes | no |
| O87545 | GYRB_TREDE | 5, ., 9, 9, ., 1, ., 3 | 0.4831 | 0.9758 | 0.9514 | yes | no |
| Q5NBJ3 | GYRB_ORYSJ | 5, ., 9, 9, ., 1, ., 3 | 0.8102 | 0.9983 | 0.8518 | yes | no |
| P94604 | GYRB_CLOAB | 5, ., 9, 9, ., 1, ., 3 | 0.5168 | 0.9710 | 0.9481 | yes | no |
| Q6GKU0 | GYRB_STAAR | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | yes | no |
| Q5HJZ1 | GYRB_STAAC | 5, ., 9, 9, ., 1, ., 3 | 0.5266 | 0.9790 | 0.9456 | yes | no |
| Q94BZ7 | GYRBM_ARATH | 5, ., 9, 9, ., 1, ., 3 | 0.8424 | 1.0 | 0.8497 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.99.1.3 | 0.979 |
| 3rd Layer | 5.99.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 622 | |||
| PRK05644 | 638 | PRK05644, gyrB, DNA gyrase subunit B; Validated | 0.0 | |
| COG0187 | 635 | COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ | 0.0 | |
| TIGR01059 | 654 | TIGR01059, gyrB, DNA gyrase, B subunit | 0.0 | |
| PRK05559 | 631 | PRK05559, PRK05559, DNA topoisomerase IV subunit B | 0.0 | |
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 0.0 | |
| smart00433 | 594 | smart00433, TOP2c, TopoisomeraseII | 0.0 | |
| TIGR01058 | 637 | TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu | 0.0 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio | 1e-179 | |
| TIGR01055 | 625 | TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu | 1e-152 | |
| cd00822 | 172 | cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DN | 3e-74 | |
| cd03366 | 114 | cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: | 1e-72 | |
| cd01030 | 115 | cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: | 1e-66 | |
| pfam00204 | 173 | pfam00204, DNA_gyraseB, DNA gyrase B | 2e-61 | |
| PHA02569 | 602 | PHA02569, 39, DNA topoisomerase II large subunit; | 4e-61 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 2e-42 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provision | 1e-39 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 2e-30 | |
| pfam00986 | 65 | pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, ca | 2e-29 | |
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 6e-23 | |
| cd03365 | 120 | cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisome | 1e-21 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio | 2e-18 | |
| pfam01751 | 86 | pfam01751, Toprim, Toprim domain | 5e-18 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 2e-16 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 4e-16 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer | 2e-15 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 3e-14 | |
| cd00188 | 83 | cd00188, TOPRIM, Topoisomerase-primase domain | 1e-07 | |
| cd03481 | 153 | cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_Sc | 4e-04 |
| >gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
Score = 1015 bits (2626), Expect = 0.0
Identities = 359/622 (57%), Positives = 459/622 (73%), Gaps = 16/622 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLVYEI+DN++DEA AGY +IEV + D S++V DNGRGIP+D+HP
Sbjct: 28 MYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDGSITVTDNGRGIPVDIHPK 87
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T K A+E VLTVLHAGGKFGG GY VSGGLHGVG+SVVNALS LEV V RDG Y+Q
Sbjct: 88 TGKPAVEVVLTVLHAGGKFGGG--GYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYYQ 145
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+Y RG PVT L + D GT + F PD ++F T +FD++T+A R+RELAFLN
Sbjct: 146 EYERGVPVTPLEV----IGETDETGTTVTFKPDPEIFET-TEFDYDTLATRLRELAFLNK 200
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLA 239
L I L D + + + + GG++EYV++LN +K+PLH + + F + DGI +++A
Sbjct: 201 GLKITLT--DEREGEEKEETFHYEGGIKEYVEYLNRNKEPLHEEPIYFEGEKDGIEVEVA 258
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ D YS+ +L +AN+I T +GGTH EG K +LTR +N +K+K +K+KD +L+GE
Sbjct: 259 MQYN-DGYSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNKLLKEKDDNLTGED 317
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ P P+FEGQTKT+LGN EVR +VD V E L+E+LE +P+V I+ K
Sbjct: 318 VREGLTAVISVKHPEPQFEGQTKTKLGNSEVRGIVDSVVSEALSEFLEENPNVAKKIVEK 377
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
++ A +A AA++AR+L R+KS L SSSLPGKLADCSS PEESE++IVEGDSAGGSAKQ
Sbjct: 378 AILAARAREAARKARELTRRKSALESSSLPGKLADCSSKDPEESELYIVEGDSAGGSAKQ 437
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRDRRFQAILPLRGKILNVE+ + KNEEI+ LI ALG G+ G+DF LRYHKII
Sbjct: 438 GRDRRFQAILPLRGKILNVEKARLDKILKNEEIRALITALGTGI-GDDFDISKLRYHKII 496
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLYK+++G + +Y Y D EL +
Sbjct: 497 IMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKIKKGGK-EYAYSDEELDE 555
Query: 540 VKSSFP--SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 597
+ + N Y IQR+KGLGEM P QLWETT++PE R L Q+ IEDAAEA+ +FS LM
Sbjct: 556 ILAELKLKGNPKYGIQRYKGLGEMNPEQLWETTMDPETRTLLQVTIEDAAEADEIFSILM 615
Query: 598 GARVDTRKELIQ-NAANLVNLD 618
G V+ R+E I+ NA + NLD
Sbjct: 616 GDDVEPRREFIEENAKYVRNLD 637
|
Length = 638 |
| >gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII | Back alignment and domain information |
|---|
| >gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >gnl|CDD|238419 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|215785 pfam00204, DNA_gyraseB, DNA gyrase B | Back alignment and domain information |
|---|
| >gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|201537 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus | Back alignment and domain information |
|---|
| >gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216679 pfam01751, Toprim, Toprim domain | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 100.0 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 100.0 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 100.0 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 100.0 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 100.0 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 100.0 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 100.0 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 100.0 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 100.0 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 100.0 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 100.0 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 100.0 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 100.0 | |
| KOG0355 | 842 | consensus DNA topoisomerase type II [Chromatin str | 100.0 | |
| cd03366 | 114 | TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisome | 100.0 | |
| cd01030 | 115 | TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisome | 100.0 | |
| cd03365 | 120 | TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-prima | 100.0 | |
| cd00822 | 172 | TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: | 100.0 | |
| PF00204 | 173 | DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA | 100.0 | |
| cd03481 | 153 | TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: T | 99.97 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.93 | |
| PF00986 | 65 | DNA_gyraseB_C: DNA gyrase B subunit, carboxyl term | 99.91 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.86 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.86 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.79 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 99.73 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 99.7 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.59 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.53 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 99.36 | |
| PF01751 | 100 | Toprim: Toprim domain; InterPro: IPR006171 This is | 99.13 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 99.08 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 98.98 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 98.85 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.76 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 98.74 | |
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, h | 98.73 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 98.39 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 98.36 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 98.32 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 97.91 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 97.7 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 97.38 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 97.17 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 97.15 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.1 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 97.01 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 97.0 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 96.95 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 96.88 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 96.87 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 96.85 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 96.78 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 96.75 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.75 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 96.71 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 96.65 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 96.55 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 96.48 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 96.46 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 96.39 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 96.36 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 96.32 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 96.16 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 96.12 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 96.08 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 96.03 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 96.03 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 95.97 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.89 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 95.86 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 95.85 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 95.85 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 95.78 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 95.61 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 95.52 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 95.47 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 95.46 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 95.38 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 95.32 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 94.95 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 94.91 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 94.81 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 94.6 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 94.59 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 94.39 | |
| PRK13557 | 540 | histidine kinase; Provisional | 94.36 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 94.2 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 94.2 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 94.15 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 93.73 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 93.68 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 93.46 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 93.33 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 93.16 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 92.92 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 92.11 | |
| KOG0020 | 785 | consensus Endoplasmic reticulum glucose-regulated | 92.08 | |
| cd00188 | 83 | TOPRIM Topoisomerase-primase domain. This is a nuc | 91.72 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 91.69 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 91.21 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 91.0 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 89.32 | |
| KOG0019 | 656 | consensus Molecular chaperone (HSP90 family) [Post | 88.49 | |
| PF14501 | 100 | HATPase_c_5: GHKL domain | 87.1 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 86.41 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 82.1 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 80.31 |
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-203 Score=1627.29 Aligned_cols=608 Identities=55% Similarity=0.933 Sum_probs=579.6
Q ss_pred CeecCCCC-chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCC
Q 007002 1 MYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 79 (622)
Q Consensus 1 MYiGst~~-~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf 79 (622)
||||||+. +|||||||||||||+||++||+|+.|.|+|++||+|+|.|||||||+++||++++|++|+|||+|||||||
T Consensus 26 MYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKF 105 (635)
T COG0187 26 MYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKF 105 (635)
T ss_pred ceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCccc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCCCCCCeEEEEEeCcccccc
Q 007002 80 GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 159 (622)
Q Consensus 80 ~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~ 159 (622)
+++ +|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|+++.+++.+.. .....+||+|+|+||+++|++
T Consensus 106 d~~--~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G~~~~~l~~ig~--~~~~~~GT~V~F~PD~~iF~~ 181 (635)
T COG0187 106 DND--SYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERGVPVTPLEVIGS--TDTKKTGTKVRFKPDPEIFGE 181 (635)
T ss_pred CCC--ccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeCCCcCCCceeccc--CCCCCCccEEEEEcChHhcCC
Confidence 987 9999999999999999999999999999999999999999999988876521 235578999999999999986
Q ss_pred cccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCCCCC-eeEEEeecceeEEEE
Q 007002 160 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDL 238 (622)
Q Consensus 160 ~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l~~-~i~~~~~~~~i~vev 238 (622)
..|+++.|++||+++|||||||+|.|+|+|.... .. .|||++||.+||++++.+++++++ ++++..+..++.|||
T Consensus 182 -~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~--~~-~~~y~~Gl~~yv~~l~~~k~~l~~~~~~~~~~~~~~~vEv 257 (635)
T COG0187 182 -TEFDYEILKRRLRELAFLNKGVKITLTDERTGEE--KK-EFHYEGGLKDYVEYLNKGKTPLHEEIFYFNGEKDGIAVEV 257 (635)
T ss_pred -cccCHHHHHHHHHHHhccCCCCEEEEEeccCCcc--cc-eeecccHHHHHHHHHhcCCCccccCceecccCccceEEEE
Confidence 5799999999999999999999999999997521 12 599999999999999999999996 666677778999999
Q ss_pred EEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCC
Q 007002 239 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 318 (622)
Q Consensus 239 al~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~Fe 318 (622)
||||+ ++|+++++||||||+|++||||++||++||+++||+|+++.+++|+++ ++++||||||++||||+|+||+|+
T Consensus 258 A~q~~-d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~~k~~~--l~g~Diregl~aviSvki~~PqFe 334 (635)
T COG0187 258 ALQWN-DGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNLLKEGD--LTGDDIREGLTAVISVKIPDPQFE 334 (635)
T ss_pred EEEEe-cCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHHhCcCcccC--CCHHHHhhccEEEEEEECCCCCcC
Confidence 99999 899999999999999999999999999999999999999999988765 999999999999999999999999
Q ss_pred CccccccCCchhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCC
Q 007002 319 GQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 398 (622)
Q Consensus 319 gQTK~kL~n~~v~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~~ar~aakkar~~~~~k~~~~~~~l~gKL~d~~~~ 398 (622)
||||+||+|++++.+|++++++.|..||++||.+|+.|+++++.+++||+|||+||+++|+|+.++...|||||+||+++
T Consensus 335 gQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~aa~aR~aarkare~~R~k~~~~~~~LpGKLadC~sk 414 (635)
T COG0187 335 GQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAAAKAREAARKARELTRRKSALDIPGLPGKLADCTSK 414 (635)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCceEEEEeccCCCccccccCCCCceEeeccCCccccccccCHHHHhhCHhHHHHHHHhccCccCCcCccccccceeE
Q 007002 399 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 478 (622)
Q Consensus 399 ~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKilNv~ka~~~ki~~n~Ei~~li~~lG~~~~~~~~~~~~LRY~ki 478 (622)
+|++|||||||||||||||||||||+|||||||||||||||+|+.+||++|+||++|++|||||++. +||+++||||||
T Consensus 415 d~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGKiLNVeka~~~kil~N~EI~~ii~AlG~g~~~-~fd~~~LRY~kI 493 (635)
T COG0187 415 DPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARLDKILKNEEIQTIITALGTGIGK-DFDLEKLRYHKI 493 (635)
T ss_pred CcccceEEEEecCCcchhhhhccCccceEEecccCcchhhhhccHhhhhhhHHHHHHHHHhCCCCCC-CCChhhCccCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999954 599999999999
Q ss_pred EEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhCCCCCccceeEeecc
Q 007002 479 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGL 558 (622)
Q Consensus 479 iimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~~~~~e~~~~~~~~~~~~~~~i~~~KGL 558 (622)
||||||||||+|||+|||||||||||+||+.||||+|+|||||+++||++.|+|++.|+++.++++...++|+|||||||
T Consensus 494 iIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~~~k~~~Y~~~d~E~~~~~~~~~~~~~~~IqRyKGL 573 (635)
T COG0187 494 IIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVKKGKKTFYAYDDEELEKLLERLGKKKGYEIQRYKGL 573 (635)
T ss_pred EEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEEEcCceEEEEcCCceeEeCCHHHHHHHHHHhcccCCceeEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988752258999999999
Q ss_pred cCCCcchhhhhccCCcceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcCCCCC
Q 007002 559 GEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 622 (622)
Q Consensus 559 G~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~~~~~~d~ 622 (622)
|||||+|||||||||++|+|.+|+++|+.+|+++|++|||+++++||+||++|+.+ +.++||
T Consensus 574 GEMnp~QLwETTmdP~~R~L~~V~i~da~~ad~~f~~LMGd~ve~Rr~fIe~na~~--~~~~di 635 (635)
T COG0187 574 GEMNPDQLWETTMDPETRRLLQVTIEDADEADEIFSTLMGDKVEPRRNFIEENALF--VENLDI 635 (635)
T ss_pred CCCCHHHHHHhccCccceeEEEEEcccHHHHHHHHHHHcCCCchHHHHHHHHHhhh--hhhccC
Confidence 99999999999999999999999999999999999999999999999999999986 456665
|
|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00188 TOPRIM Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14501 HATPase_c_5: GHKL domain | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 622 | ||||
| 2xco_A | 726 | The 3.1a Crystal Structure Of The Catalytic Core (B | 4e-75 | ||
| 2xcr_B | 726 | The 3.5a Crystal Structure Of The Catalytic Core (B | 4e-75 | ||
| 1ei1_A | 391 | Dimerization Of E. Coli Dna Gyrase B Provides A Str | 9e-69 | ||
| 3foe_C | 268 | Structural Insight Into The Quinolone-Dna Cleavage | 3e-63 | ||
| 2xcs_B | 692 | The 2.1a Crystal Structure Of S. Aureus Gyrase Comp | 4e-60 | ||
| 1kij_A | 390 | Crystal Structure Of The 43k Atpase Domain Of Therm | 3e-54 | ||
| 2xkk_A | 767 | Crystal Structure Of Moxifloxacin, Dna, And A. Baum | 2e-53 | ||
| 2xkj_E | 767 | Crystal Structure Of Catalytic Core Of A. Baumannii | 2e-53 | ||
| 3ig0_A | 242 | Crystal Structure Of The Second Part Of The Mycobac | 5e-50 | ||
| 2zjt_A | 247 | Crystal Structure Of Dna Gyrase B' Domain Sheds Lig | 6e-50 | ||
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 6e-48 | ||
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 5e-11 | ||
| 4hxz_A | 390 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 9e-40 | ||
| 4gee_A | 215 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 1e-38 | ||
| 3ttz_A | 198 | Crystal Structure Of A Topoisomerase Atpase Inhibit | 1e-37 | ||
| 3lnu_A | 408 | Crystal Structure Of Pare Subunit Length = 408 | 1e-36 | ||
| 3g75_A | 184 | Crystal Structure Of Staphylococcus Aureus Gyrase B | 4e-36 | ||
| 1s16_A | 390 | Crystal Structure Of E. Coli Topoisomerase Iv Pare | 5e-36 | ||
| 4hyp_A | 215 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 3e-34 | ||
| 4duh_A | 220 | Crystal Structure Of 24 Kda Domain Of E. Coli Dna G | 4e-34 | ||
| 1kzn_A | 205 | Crystal Structure Of E. Coli 24kda Domain In Comple | 5e-34 | ||
| 3g7e_A | 203 | Crystal Structure Of E. Coli Gyrase B Co-Complexed | 8e-34 | ||
| 1aj6_A | 219 | Novobiocin-resistant Mutant (r136h) Of The N-termin | 2e-33 | ||
| 4hz5_A | 216 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 3e-33 | ||
| 4b6c_A | 196 | Structure Of The M. Smegmatis Gyrb Atpase Domain In | 8e-33 | ||
| 4em7_A | 226 | Crystal Structure Of A Topoisomerase Atp Inhibitor | 1e-30 | ||
| 3cwv_A | 369 | Crystal Structure Of B-Subunit Of The Dna Gyrase Fr | 8e-30 | ||
| 4hz0_A | 213 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 2e-22 | ||
| 3fv5_A | 201 | Crystal Structure Of E. Coli Topoisomerase Iv Co-Co | 2e-22 | ||
| 4fm9_A | 763 | Human Topoisomerase Ii Alpha Bound To Dna Length = | 5e-22 | ||
| 3qx3_A | 803 | Human Topoisomerase Iibeta In Complex With Dna And | 2e-21 | ||
| 1s14_A | 194 | Crystal Structure Of Escherichia Coli Topoisomerase | 5e-21 | ||
| 4gfh_A | 1103 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 | 3e-16 | ||
| 4gfh_F | 1099 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 | 8e-16 | ||
| 3l4j_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 1e-13 | ||
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 2e-13 | ||
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-segment Dna Length = 7 | 2e-13 |
| >pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 | Back alignment and structure |
|
| >pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 | Back alignment and structure |
| >pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural Mechanism For Activating The Atpase Catalytic Center Length = 391 | Back alignment and structure |
| >pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 | Back alignment and structure |
| >pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 | Back alignment and structure |
| >pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390 | Back alignment and structure |
| >pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 | Back alignment and structure |
| >pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 | Back alignment and structure |
| >pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
| >pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
| >pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 390 | Back alignment and structure |
| >pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 | Back alignment and structure |
| >pdb|3TTZ|A Chain A, Crystal Structure Of A Topoisomerase Atpase Inhibitor Length = 198 | Back alignment and structure |
| >pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit Length = 408 | Back alignment and structure |
| >pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co- Complexed With Inhibitor Length = 184 | Back alignment and structure |
| >pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda Subunit Complexed With Adpnp Length = 390 | Back alignment and structure |
| >pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 | Back alignment and structure |
| >pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B In Complex With Small Molecule Inhibitor Length = 220 | Back alignment and structure |
| >pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With Clorobiocin Length = 205 | Back alignment and structure |
| >pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With Inhibitor Length = 203 | Back alignment and structure |
| >pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 | Back alignment and structure |
| >pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity Length = 216 | Back alignment and structure |
| >pdb|4B6C|A Chain A, Structure Of The M. Smegmatis Gyrb Atpase Domain In Complex With An Aminopyrazinamide Length = 196 | Back alignment and structure |
| >pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor Length = 226 | Back alignment and structure |
| >pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From Myxococcus Xanthus Length = 369 | Back alignment and structure |
| >pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 213 | Back alignment and structure |
| >pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed With Inhibitor Length = 201 | Back alignment and structure |
| >pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 | Back alignment and structure |
| >pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 | Back alignment and structure |
| >pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv Pare 24kda Subunit Length = 194 | Back alignment and structure |
| >pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 | Back alignment and structure |
| >pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
| >pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
Score = 566 bits (1462), Expect = 0.0
Identities = 156/378 (41%), Positives = 220/378 (58%), Gaps = 11/378 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIG TG G HHL EILDNAVDEA AGYA+ I V L D S++V DNGRGIP+DL P
Sbjct: 23 MYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMPE 82
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
K A+E + LH+GGKF + Y VSGGLHGVG SVVNALSE V V+R+G +
Sbjct: 83 EGKPAVEVIYNTLHSGGKFEQGA--YKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRI 140
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+SRG+ L V+ + + GTR+ F PD ++F ++FD + I R+RE+A+L
Sbjct: 141 AFSRGEVTEPL--RVVGEAPRGKTGTRVTFKPDPEIFGN-LRFDPSKIRARLREVAYLVA 197
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLA 239
L + + E+ + GG+ + + L + L+ R + +++
Sbjct: 198 GLKLVFQDRQHGKEE----VFLDKGGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVG 253
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
Y+ +L YAN I T DGGTH+ K++ +R LN KK+ K+K +G+
Sbjct: 254 FLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDD 312
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
+ EGL ++SV++PNP+FEGQTK +L NPE V Q V E L E LE +P + ++ K
Sbjct: 313 LLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEK 372
Query: 360 SLSALKAALAAKRARDLV 377
+L A +A AA++AR+LV
Sbjct: 373 ALRAAQAREAARKARELV 390
|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Length = 408 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Length = 369 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Length = 226 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Length = 220 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Length = 198 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 100.0 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 100.0 | |
| 3k9f_C | 268 | DNA topoisomerase 4 subunit B; quinolone, topoisom | 100.0 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 100.0 | |
| 3nuh_B | 420 | DNA gyrase subunit B; topoisomerase, supercoiling, | 100.0 | |
| 3m4i_A | 242 | DNA gyrase subunit B; GYRB, toprim, type II topois | 100.0 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 100.0 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 100.0 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 100.0 | |
| 2xkj_E | 767 | Topoisomerase IV; type IIA topoisomerase; 2.20A {A | 100.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 100.0 | |
| 3l4j_A | 757 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3qx3_A | 803 | DNA topoisomerase 2-beta; toprim domain, winged-he | 100.0 | |
| 2xcs_B | 692 | DNA gyrase subunit B, DNA gyrase subunit A; isomer | 100.0 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 100.0 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 100.0 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 100.0 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 100.0 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 100.0 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.9 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 99.9 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.9 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.89 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.85 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.66 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 99.07 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 99.03 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.02 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 98.97 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 98.94 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 98.88 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 98.85 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 98.84 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 98.69 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 98.65 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 98.62 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 98.57 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 98.49 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 98.22 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 97.92 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 97.68 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 97.64 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 97.55 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.53 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 97.52 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 97.49 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.46 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.43 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 97.37 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 97.35 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.33 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 97.33 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 97.28 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 97.18 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.18 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.17 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 97.01 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 97.0 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 96.89 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 96.72 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 96.67 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 96.49 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 96.26 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 95.84 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory pr | 83.51 |
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-157 Score=1394.14 Aligned_cols=586 Identities=24% Similarity=0.356 Sum_probs=479.1
Q ss_pred CeecCCCCc-----------------------hhhHHHHHHHHhHHHhhhcCC-CCeEEEEEe-CCCeEEEEECCCCccC
Q 007002 1 MYIGSTGPR-----------------------GLHHLVYEILDNAVDEAQAGY-ASNIEVALL-ADNSVSVADNGRGIPI 55 (622)
Q Consensus 1 MYiGst~~~-----------------------gL~~lv~EildNaiDe~~~g~-~~~I~V~l~-~~g~i~V~DnGrGIP~ 55 (622)
||||||++. |||||||||||||+||++||+ |+.|.|+|+ +||+|+|+||||||||
T Consensus 27 MYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~sisV~DnGRGIPv 106 (1177)
T 4gfh_A 27 TYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPI 106 (1177)
T ss_dssp GTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTEEEEEECSSCCCC
T ss_pred CccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCCEEEEEecCCcccc
Confidence 999999965 999999999999999999997 689999999 5999999999999999
Q ss_pred cccCCCCcchhhhhheeeccCCCCCCCCCCeeeccccccccceeeeeecCeEEEEEE--eCCEEEEEEEecCccccccee
Q 007002 56 DLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGMEYHQKYSRGKPVTTLTC 133 (622)
Q Consensus 56 ~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~--r~g~~~~q~f~~G~~~~~~~~ 133 (622)
++||++|+|+||+|||+|||||||+++ +|++||||||||+|||||||++|.|+|. |+|+.|.|+|++|+++.+++.
T Consensus 107 d~h~~~~~~~~Evv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~ 184 (1177)
T 4gfh_A 107 EIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPK 184 (1177)
T ss_dssp SBCTTTCSBHHHHHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred cccCCCCCEeeeeeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCe
Confidence 999999999999999999999999987 9999999999999999999999998885 789999999999999877655
Q ss_pred eccCCCCCCCCCeEEEEEeCcccccccccCCHHHHHHHHHHHhccCC---CcEEEEeecCCCCCCCceeEEEeCCcHHHH
Q 007002 134 HVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP---KLTIALRKEDSDPEKNQYNEYFFAGGLEEY 210 (622)
Q Consensus 134 ~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~i~~rl~elA~lnp---gl~I~l~d~r~~~~~~~~~~f~~~~Gl~~y 210 (622)
+. ....+++||+|+|+||+++|++ ..|+++.+..|++++|+|++ ++.+.+++++. ..++|++|+.+|
T Consensus 185 i~--~~~~~~tGT~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g~~~-------~~~~f~~gi~~y 254 (1177)
T 4gfh_A 185 IT--SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKSL-------KIRNFKNYVELY 254 (1177)
T ss_dssp EE--ECCSSCCCEEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESSCBC-------CCCSHHHHHGGG
T ss_pred ee--cCCCCCCceEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecCCee-------EEeeccchhhhh
Confidence 42 1334578999999999999985 47999999999999888874 57788888764 457788999999
Q ss_pred HHHHhcCCCCCC--------CeeEEEeecceeEEEEEEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHH
Q 007002 211 VQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLG 282 (622)
Q Consensus 211 v~~l~~~~~~l~--------~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~ 282 (622)
+..++..+..++ +...+..+..+.+||||++|+ +++ .+++||||+|+|++||||++||++||+++||+|+
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T~~GGTHv~gfr~altr~in~~~ 332 (1177)
T 4gfh_A 255 LKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIATTMGGTHVNYITDQIVKKISEIL 332 (1177)
T ss_dssp TTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEETTEEHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeecCCCchHHHHHHHHHHHHHHHHh
Confidence 988766543322 111223344566799999998 444 4468999999999999999999999999999998
Q ss_pred hhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCCchhhhhhhhhhH-HHHHHHHhhChHHHHHHHHHHH
Q 007002 283 KKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ-EYLTEYLELHPDVLDSILSKSL 361 (622)
Q Consensus 283 kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~FegQTK~kL~n~~v~~~v~~~v~-~~l~~~l~~np~~~~~I~~k~~ 361 (622)
++.+. .+++++|||+||++||||+++||+|+||||+||+|+.........+. +.+..+++ .. |+++++
T Consensus 333 ~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~~~~~--~~----i~~~~~ 401 (1177)
T 4gfh_A 333 KKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMK--TD----LATRMF 401 (1177)
T ss_dssp HHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTT--SH----HHHHHH
T ss_pred hhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchHHHhhhhhh--HH----HHHHHH
Confidence 76543 46899999999999999999999999999999999865443332222 23333332 23 444444
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCCceEEEEeccCCCccccccC---CCCceEeeccCCcc
Q 007002 362 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKI 435 (622)
Q Consensus 362 ~~~~ar~aakkar~~~~~k~~~~~~~l~gKL~d~~---~~~~~~~eL~lvEGDSA~gsa~~gR---dr~~qai~PLrGKi 435 (622)
.++++++++++++...++|+.+ ..+ +||+||+ +++|++|||||||||||||||++|| +|+|||||||||||
T Consensus 402 ~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKi 478 (1177)
T 4gfh_A 402 EIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKM 478 (1177)
T ss_dssp HHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSC
T ss_pred HHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhhHhhcccccCcccEEecccCcee
Confidence 4444444444444444444332 233 4999987 6899999999999999999999998 89999999999999
Q ss_pred ccccccCHHHHhhCHhHHHHHHHhccCccCCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhh-cCcEEE
Q 007002 436 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYV 514 (622)
Q Consensus 436 lNv~ka~~~ki~~n~Ei~~li~~lG~~~~~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~ 514 (622)
|||++|+.+||++|+||++|++|||||++.+.+|+++||||||||||||||||+|||||||||||||||+||+ +||||+
T Consensus 479 LNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrtLLltfF~r~~p~Lie~~G~vyi 558 (1177)
T 4gfh_A 479 LNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLE 558 (1177)
T ss_dssp CCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEE
T ss_pred chhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHHHHHHHHHHhChhhEeeCCEEEE
Confidence 9999999999999999999999999999655559999999999999999999999999999999999999999 999999
Q ss_pred ecCCeEEEEeC---CeEEEeeCHHHHHHHHHhCCCCCccceeEeecccCCCcchhhhhccCCccee--EEeeccccHHHH
Q 007002 515 GVPPLYKVERG---KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRM--LKQLVIEDAAEA 589 (622)
Q Consensus 515 ~~tPl~kv~~g---k~~~~~~~~~e~~~~~~~~~~~~~~~i~~~KGLG~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~ 589 (622)
|+||||||+.| |...|||+++|+++|++..+...+|+||||||||||+|+|||||||||++|+ +.+++.+|++.+
T Consensus 559 a~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Ett~~~d~~~~~~~~v~~~d~~~~ 638 (1177)
T 4gfh_A 559 FITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYI 638 (1177)
T ss_dssp ECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHHHHTCTTTEEEEECCCTTTHHHH
T ss_pred EecceEEEEEecCCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHHHhCcccceEEEEEcccccHHHH
Confidence 99999999865 4567999999999999887655679999999999999999999888877554 455666676655
Q ss_pred HHHHHHhcCCCchHHHHHHHhccccCCc
Q 007002 590 NVVFSSLMGARVDTRKELIQNAANLVNL 617 (622)
Q Consensus 590 ~~~~~~lmg~~~~~Rk~~i~~~~~~~~~ 617 (622)
+++ |||+++++||+||++|.+...+
T Consensus 639 d~~---f~~~~~~~RkewI~~~~~~~~~ 663 (1177)
T 4gfh_A 639 DLA---FSKKKADDRKEWLRQYEPGTVL 663 (1177)
T ss_dssp HHH---HCGGGHHHHHHHHHHCCTTCCC
T ss_pred HHH---HhccchhhHHHHHHhcCccccc
Confidence 554 4689999999999999987544
|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 622 | ||||
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 4e-74 | |
| d1ei1a2 | 219 | d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli | 4e-59 | |
| d1s14a_ | 168 | d.122.1.2 (A:) Topoisomerase IV subunit B {Escheri | 1e-55 | |
| d1kija2 | 212 | d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermoph | 1e-54 | |
| d1ei1a1 | 172 | d.14.1.3 (A:221-392) DNA gyrase B {Escherichia col | 5e-43 | |
| d1kija1 | 172 | d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermop | 4e-42 | |
| d1s16a1 | 167 | d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B | 5e-41 | |
| d1pvga2 | 239 | d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's | 3e-28 | |
| d1pvga1 | 161 | d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's | 3e-20 | |
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 4e-07 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 9e-05 | |
| d2c2aa2 | 161 | d.122.1.3 (A:321-481) Sensor histidine kinase TM08 | 0.003 |
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 250 bits (639), Expect = 4e-74
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 384 RSSSLPG--KLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 433
R S + KL D + + + + + EGDSA G A GRD + PLRG
Sbjct: 1 RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRG 58
Query: 434 KILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 493
K+LNV + KN EIQ + + +GL + + ++LRY ++I+TD D DG+HI+
Sbjct: 59 KMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 118
Query: 494 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQY---CYDDAELKKVKSSFPSNAL 549
L++ F L D +G + + P+ KV K + Y+ + +K +
Sbjct: 119 LIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFT 178
Query: 550 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 609
+ + +KGLG + ++ E N ++ + K + + + + + D RKE ++
Sbjct: 179 WKQKYYKGLGTSLAQEVREYFSNLDRHL-KIFHSLQGNDKDYIDLAFSKKKADDRKEWLR 237
Query: 610 N 610
Sbjct: 238 Q 238
|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 219 | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 212 | Back information, alignment and structure |
|---|
| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 172 | Back information, alignment and structure |
|---|
| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 172 | Back information, alignment and structure |
|---|
| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| d1bjta_ | 760 | DNA topoisomerase II, C-terminal fragment (residue | 100.0 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 100.0 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 100.0 | |
| d1kija1 | 172 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1ei1a1 | 172 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1s16a1 | 167 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 100.0 | |
| d1pvga1 | 161 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 99.94 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.8 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.72 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.59 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.46 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 98.28 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 98.0 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 97.97 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 97.85 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 97.78 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 97.77 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.74 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 97.53 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 97.22 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 96.9 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 96.25 | |
| d2hkja2 | 164 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 88.2 |
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-69 Score=620.47 Aligned_cols=226 Identities=27% Similarity=0.433 Sum_probs=175.6
Q ss_pred CCCCCCCCCCC---CCCCCCceEEEEeccCC-----CccccccCCCCceEeeccCCccccccccCHHHHhhCHhHHHHHH
Q 007002 386 SSLPGKLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 457 (622)
Q Consensus 386 ~~l~gKL~d~~---~~~~~~~eL~lvEGDSA-----~gsa~~gRdr~~qai~PLrGKilNv~ka~~~ki~~n~Ei~~li~ 457 (622)
.++| ||+||+ ++++.+||||||||||| +|++++||| ||||||||||||||++++.+||++|+||++|++
T Consensus 6 ~~~p-kl~d~~~~g~~~~~~~~l~~~EGdSA~~~~~~g~~~~~rd--~~~v~plrGK~lN~~~~~~~~~~~n~ei~~l~~ 82 (760)
T d1bjta_ 6 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKK 82 (760)
T ss_dssp CSCT-TCBCCTTTTSGGGGGCEEEEEESHHHHHHHHHHHHHHCSS--SEEEEEEECCCCSCCC------CCHHHHHHHHH
T ss_pred CCCC-CcccccccCCCChhhcEEEEecccCccccccCcccccccc--cEEEeecCCcccccccCCHHHHhhCHHHHHHHH
Confidence 3577 999998 68999999999999999 677788887 799999999999999999999999999999999
Q ss_pred HhccCccCCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhh-cCcEEEecCCeEEEEe---CCeEEEeeC
Q 007002 458 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVER---GKQVQYCYD 533 (622)
Q Consensus 458 ~lG~~~~~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~~~tPl~kv~~---gk~~~~~~~ 533 (622)
||||+++.++.|+++|||||||||||||+||+||+||||||||+|||+||+ +||||+|+||||||+. +|.+.+||+
T Consensus 83 ~lG~~~~~~~~~~~~lrY~~i~imtDaD~DG~hI~~Lll~ff~~~~p~l~~~~g~i~~~~~Pl~~~~~~~~~~~~~~~y~ 162 (760)
T d1bjta_ 83 IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYN 162 (760)
T ss_dssp HHTCCSSBCCSCSSSSSCSEEEEEEC-----CCHHHHHHHHHHHHBTTTTTSTTSEEECCCCSEEEEECSSCCEEEEESS
T ss_pred HHCCCCCCCCCchhhCCCCcEEEEECCCCCchHHHHHHHHHHHHhhHHHhccCCEEEEEeCCcEEEEecCCCcceeeecc
Confidence 999999666669999999999999999999999999999999999999998 8999999999999975 456789999
Q ss_pred HHHHHHHHHhCCCCCccceeEeecccCCCcchhhhhccCCcceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccc
Q 007002 534 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 613 (622)
Q Consensus 534 ~~e~~~~~~~~~~~~~~~i~~~KGLG~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~ 613 (622)
++|+++|..+....++|+||||||||||+|+|+|||||||++|.+.++++++.+ ++.++.+++|+.+++||+||+++.+
T Consensus 163 ~~e~~~~~~~~~~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~F~k~~~d~RKewl~~~~~ 241 (760)
T d1bjta_ 163 MPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGND-KDYIDLAFSKKKADDRKEWLRQYEP 241 (760)
T ss_dssp HHHHHHHHHHTTTTSCEEECCCCCCSTTHHHHHHHHHHHHHHHHHHHHHCC----------------------CCCCSCC
T ss_pred hhhHHHHHHHhcCccccchhcccccccccchhhHHHhcccccccceeEeccchh-HHHHHHHHhhcccchHHHHHhhccc
Confidence 999999998866556899999999999999999999999999876665554432 3444555569999999999999987
Q ss_pred cC
Q 007002 614 LV 615 (622)
Q Consensus 614 ~~ 615 (622)
..
T Consensus 242 ~~ 243 (760)
T d1bjta_ 242 GT 243 (760)
T ss_dssp --
T ss_pred cc
Confidence 53
|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|