Citrus Sinensis ID: 007013

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
ccEEEEEccccccccccccHHHHHHHHccccEEEEEEcccccccccHHHHccccccEEEEcccccccccccccEEEEEEEEEccccccccccccEEEEcccccccccccccccccccccHHHHccccccccEEEEEcccEEEEEEEcccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccEEEEEEEEEcccHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccEEEEEccccccccccccccccEEEcccccccc
cEEEEEEcccccHHHcccccHHHHHHHHcccEEEEEEEEcccccccHHcEEcccccEEEEcccccccccccccEEEEEEEccccccccccccccEEEcccccccccccccccccccccccccHHHHcccccEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHccccccHHHccccccHHHHHHHHHcccccHHHHHHHcccccccEEEEEEcccccccccccEEEEEEEcHHHHHHHHHcHHHHHHHHccccccccccEEEccccccccccccccccccccccccEEEEEccccccccccccccHHHHcHHHHcHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHccccccccccccccccEEEEEcccccccccEEEEEccccccccccHHccccEEEEccccccc
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSctrtsdkgrtgysgvatfcrvkspfsstevalpvaaeegftglletSGSKIMEGLEDFSKDELLkidsegrcvitdhgHFILfnvygpradsedtVRIQFKLQFFHVLQGRRifvvgdlniapaaidrcdagpdfakNEFRIWFRSMLVesggsffdvfrskhperreaytcwpsntgaeqfnygtridhilcagpclhqkhdlqshnfvtchvnecdilidykrwkpgnaprwkggmstrlegsdhapvymclgevpeipqhstpslasrylpiIRGVQQTLVSVLMKREVAkqgksckfsgslpaesnstgdtedcsenVDRSlnnycdsgilqgvycsssnqesegeFTKTIENCRdsanvashstitqgssnhispfhVDRARKKAkksqlgqlsLKSFFhkrsnvshddnnsitdtslnvnnsvtdtslsqeevpeshhhsnkipvtdyscsvhelhgvnssvcshdqdekkgkrfLDKERNNVALLEWRRIQQLMETsiplckghkepcvarvvkkpgptfgrRFFVcaraegpasnpeancgyfkwAFSKSKQK
mkivtynvnglrqRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFfsctrtsdkgrtgYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAaidrcdagpdFAKNEFRIWFRSMLVESGGSFFDVFRSKHPErreaytcwpsntgAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAkqgksckfsgslpaesnstgdteDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHstitqgssnhispFHVDRARKKAKKSQLGQLSLKSFFHKRSNVshddnnsitdtslnvNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGvnssvcshdqdekkgkrfldkernnvALLEWRRIQQLMETSiplckghkepCVARVVKKPGPTFGRRFFVCARAEgpasnpeancgyfkwafskskqk
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
**IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH*TPSLASRYLPIIRGVQQTLVSVLMKRE**********************************LNNYCDSGILQGVYC**************************************************************************************************************VTDYSCSVHELHGV*********************RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP***PEANCGYFKWAF******
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSV********************************************************************************************************************************************************************************************************************Q**ET*IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP**NPEANCGYFKWAFSK****
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFS******************NVDRSLNNYCDSGILQGVYCS***********KTIENCRDSANVASHSTITQGSSNHISPFHV************GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT*****************KIPVTDYSCSVHELHGVNSS***********KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMK***********************************************************************************************************************************************************************************************FLD**RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAF******
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MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query621 2.2.26 [Sep-21-2011]
Q9UBZ4518 DNA-(apurinic or apyrimid yes no 0.494 0.592 0.315 1e-46
Q5E9N9514 DNA-(apurinic or apyrimid yes no 0.489 0.591 0.317 1e-45
Q68G58516 DNA-(apurinic or apyrimid yes no 0.494 0.594 0.313 7e-45
P87175523 DNA-(apurinic or apyrimid yes no 0.436 0.518 0.306 4e-33
P38207520 DNA-(apurinic or apyrimid yes no 0.518 0.619 0.267 2e-20
P27864679 Recombination repair prot yes no 0.383 0.350 0.253 4e-17
P45951536 Apurinic endonuclease-red no no 0.373 0.432 0.286 9e-17
P37454252 Exodeoxyribonuclease OS=B yes no 0.347 0.857 0.284 3e-15
A0MTA1310 DNA-(apurinic or apyrimid no no 0.347 0.696 0.275 7e-14
P43138317 DNA-(apurinic or apyrimid no no 0.341 0.668 0.282 3e-11
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1 Back     alignment and function desciption
 Score =  188 bits (478), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)

Query: 1   MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
           +++V++N+NG+R+ +              ++ ++LD  DADI+C QETK+ R  L   L 
Sbjct: 2   LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61

Query: 51  MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
           + +GY S+FS +R     R+GYSGVATFC+        + A PVAAEEG +GL  T    
Sbjct: 62  IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109

Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
           +     +++F+++EL  +DSEGR ++T H             L NVY P AD     R+ 
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169

Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
           FK++F+ +LQ         G  + ++GDLN A   ID  DA     F ++  R W  S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229

Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
              G       G F D +R   P++  A+TCW + TGA   NYG+R+D++L         
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280

Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
                         +  ++ID  +            +   + GSDH PV   L  V  +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317

Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
               P L +R+LP   G Q  ++  L+  E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Function as a weak apurinic/apyrimidinic (AP) endodeoxyribonuclease in the DNA base excision repair (BER) pathway of DNA lesions induced by oxidative and alkylating agents. Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. Displays also double-stranded DNA 3'-5' exonuclease, 3'-phosphodiesterase activities. Shows robust 3'-5' exonuclease activity on 3'-recessed heteroduplex DNA and is able to remove mismatched nucleotides preferentially. Shows fairly strong 3'-phosphodiesterase activity involved in the removal of 3'-damaged termini formed in DNA by oxidative agents. In the nucleus functions in the PCNA-dependent BER pathway. Required for somatic hypermutation (SHM) and DNA cleavage step of class switch recombination (CSR) of immunoglobulin genes. Required for proper cell cycle progression during proliferation of peripheral lymphocytes.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1 Back     alignment and function description
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2 PE=1 SV=1 Back     alignment and function description
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1 Back     alignment and function description
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1 Back     alignment and function description
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1 PE=1 SV=2 Back     alignment and function description
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP PE=2 SV=2 Back     alignment and function description
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1 SV=1 Back     alignment and function description
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1 PE=1 SV=1 Back     alignment and function description
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus GN=Apex1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
225431130625 PREDICTED: DNA-(apurinic or apyrimidinic 0.969 0.963 0.608 0.0
224074261617 predicted protein [Populus trichocarpa] 0.969 0.975 0.612 0.0
255561291586 ap endonuclease, putative [Ricinus commu 0.916 0.970 0.611 0.0
449434154611 PREDICTED: DNA-(apurinic or apyrimidinic 0.958 0.973 0.588 0.0
147789500632 hypothetical protein VITISV_019797 [Viti 0.933 0.917 0.594 0.0
356502118622 PREDICTED: DNA-(apurinic or apyrimidinic 0.966 0.964 0.583 0.0
359476825596 PREDICTED: DNA-(apurinic or apyrimidinic 0.919 0.958 0.593 0.0
357518059613 DNA-(apurinic or apyrimidinic site) lyas 0.954 0.967 0.567 0.0
297798308616 endonuclease/exonuclease/phosphatase fam 0.908 0.915 0.566 1e-178
79610414610 endonuclease 2 [Arabidopsis thaliana] gi 0.916 0.932 0.565 1e-177
>gi|225431130|ref|XP_002265926.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/644 (60%), Positives = 469/644 (72%), Gaps = 42/644 (6%)

Query: 1   MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
           MKIVTYNVNGLR R+SQFGSL K L S DADIIC QETKL R EL +D+VMADGYESFFS
Sbjct: 1   MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFS 60

Query: 61  CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---------KI 111
           CTRT+ KGR GYSGVATFCRVKS FSSTEVALP+AAEEGFTGLLE SG            
Sbjct: 61  CTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVK 120

Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-- 169
            EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK  FF +LQ  
Sbjct: 121 AEGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKR 180

Query: 170 -------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
                  GRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+K
Sbjct: 181 WETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAK 240

Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
           HP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ   FVTCHV ECDIL  
Sbjct: 241 HPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQ 300

Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 342
           +KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT
Sbjct: 301 FKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQT 360

Query: 343 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 402
           + SVLMKR+ A+Q K+ + S S   E+ +   T  CSE + RS  + C S +  G + SS
Sbjct: 361 IASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLPSGDFLSS 417

Query: 403 SNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQ 457
           SN +SEG   +    +I +  DS+N + + S I Q  S   +P  V   +KKA++SQ  Q
Sbjct: 418 SNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKARQSQCSQ 472

Query: 458 LSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCS 517
           LSLKSFF K SNV              V+N+  D SL Q +  +S+ + NK  + D    
Sbjct: 473 LSLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTSMGDDESK 521

Query: 518 VHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVA 577
             ++  ++ S  + +Q          +++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+
Sbjct: 522 SSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVS 581

Query: 578 RVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
           R+ KKPGP  GRRF+VCARAEGPASNPE NCGYFKWA SKS+ +
Sbjct: 582 RLAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRHR 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074261|ref|XP_002304326.1| predicted protein [Populus trichocarpa] gi|222841758|gb|EEE79305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255561291|ref|XP_002521656.1| ap endonuclease, putative [Ricinus communis] gi|223539047|gb|EEF40643.1| ap endonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434154|ref|XP_004134861.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cucumis sativus] gi|449491354|ref|XP_004158869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147789500|emb|CAN69587.1| hypothetical protein VITISV_019797 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502118|ref|XP_003519868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|359476825|ref|XP_003631894.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357518059|ref|XP_003629318.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula] gi|355523340|gb|AET03794.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297798308|ref|XP_002867038.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312874|gb|EFH43297.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79610414|ref|NP_974691.2| endonuclease 2 [Arabidopsis thaliana] gi|332661207|gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
TAIR|locus:2135164610 AT4G36050 [Arabidopsis thalian 0.798 0.813 0.583 3.3e-150
ZFIN|ZDB-GENE-040426-835558 apex2 "APEX nuclease (apurinic 0.314 0.349 0.424 1.4e-64
MGI|MGI:1924872516 Apex2 "apurinic/apyrimidinic e 0.322 0.387 0.362 7.7e-51
UNIPROTKB|F1RUD3515 LOC100519003 "Uncharacterized 0.315 0.380 0.366 1.2e-48
RGD|1565983521 Apex2 "APEX nuclease (apurinic 0.288 0.343 0.365 1.7e-48
UNIPROTKB|F1MSK4514 APEX2 "DNA-(apurinic or apyrim 0.354 0.428 0.352 3e-47
UNIPROTKB|Q5E9N9514 APEX2 "DNA-(apurinic or apyrim 0.354 0.428 0.352 3e-47
UNIPROTKB|Q9UBZ4518 APEX2 "DNA-(apurinic or apyrim 0.322 0.386 0.360 8.9e-47
RGD|1586200516 Apex2l1 "APEX nuclease (apurin 0.315 0.379 0.355 1.5e-44
UNIPROTKB|E2RCW8515 APEX2 "Uncharacterized protein 0.322 0.388 0.336 4e-44
TAIR|locus:2135164 AT4G36050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
 Identities = 304/521 (58%), Positives = 372/521 (71%)

Query:     1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
             MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct:     1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60

Query:    61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSK-----IME 113
             CTRTS+KGRTGYSGVATFCRVKS  SS E ALPV AEEG TGL+ ++  G K     + E
Sbjct:    61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120

Query:   114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL----- 168
             GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D  RI+FK +F+ VL     
Sbjct:   121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180

Query:   169 ----QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
                 QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct:   181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240

Query:   225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
             ER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ  D Q H+F+ CHV ECDIL +YK
Sbjct:   241 ERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 300

Query:   285 RWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 343
             R+K  N P RWKGG+ T+ +GSDH PV++   ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct:   301 RFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 360

Query:   344 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 403
             VSV  KR   ++ K+ + S S   +SN++    D S      L N    GI     CS  
Sbjct:   361 VSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFE 417

Query:   404 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 463
             N+ + G  T+  E    + ++ + S   + SS        D  RKKA+K Q  QLSLKSF
Sbjct:   418 NKSTSG-VTEA-ETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSF 475

Query:   464 FHKRSNVSH--DDNNSITDTSLNVN-NSVTDTSLSQEEVPE 501
             F   S V++  D ++S   +S +    S+T+ ++S +E  E
Sbjct:   476 FTTNSKVNNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSE 516
GO:0004518 "nuclease activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0048573 "photoperiodism, flowering" evidence=RCA
ZFIN|ZDB-GENE-040426-835 apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease) 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1924872 Apex2 "apurinic/apyrimidinic endonuclease 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUD3 LOC100519003 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1565983 Apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease) 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MSK4 APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9N9 APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBZ4 APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1586200 Apex2l1 "APEX nuclease (apurinic/apyrimidinic endonuclease) 2-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCW8 APEX2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.990.691
4th Layer4.2.99.180.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
cd09088309 cd09088, Ape2-like_AP-endo, Human Ape2-like subfam 1e-104
cd09073251 cd09073, ExoIII_AP-endo, Escherichia coli exonucle 6e-51
COG0708261 COG0708, XthA, Exonuclease III [DNA replication, r 2e-49
TIGR00633255 TIGR00633, xth, exodeoxyribonuclease III (xth) 3e-42
cd09085252 cd09085, Mth212-like_AP-endo, Methanothermobacter 5e-36
TIGR00195254 TIGR00195, exoDNase_III, exodeoxyribonuclease III 3e-35
cd09087253 cd09087, Ape1-like_AP-endo, Human Ape1-like subfam 6e-35
cd09086254 cd09086, ExoIII-like_AP-endo, Escherichia coli exo 2e-32
cd10281253 cd10281, Nape_like_AP-endo, Neisseria meningitides 9e-29
PRK13911250 PRK13911, PRK13911, exodeoxyribonuclease III; Prov 2e-23
PRK11756268 PRK11756, PRK11756, exonuclease III; Provisional 2e-19
cd09076236 cd09076, L1-EN, Endonuclease domain (L1-EN) of the 1e-14
pfam0683945 pfam06839, zf-GRF, GRF zinc finger 3e-06
cd08372241 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase 3e-06
cd09084246 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphata 5e-04
>gnl|CDD|197322 cd09088, Ape2-like_AP-endo, Human Ape2-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information 
 Score =  317 bits (814), Expect = e-104
 Identities = 147/352 (41%), Positives = 181/352 (51%), Gaps = 82/352 (23%)

Query: 2   KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
           +IVT+NVNG+R     Q  ++  SL+  LDS DADIIC QETKL R EL     + +GY+
Sbjct: 1   RIVTWNVNGIRTRLQYQPWNKENSLKSFLDSLDADIICLQETKLTRDELDEPSAIVEGYD 60

Query: 57  SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM---- 112
           SFFS +R     R GYSGVAT+CR          A PVAAEEG TG+L +   K      
Sbjct: 61  SFFSFSRG----RKGYSGVATYCR-------DSAATPVAAEEGLTGVLSSPNQKNELSEN 109

Query: 113 -------EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 165
                  E LE     ELL++DSEGRCV+TDHG F+L NVY PRAD E   R++FKL F+
Sbjct: 110 DDIGCYGEMLEFTDSKELLELDSEGRCVLTDHGTFVLINVYCPRADPEKEERLEFKLDFY 169

Query: 166 HVLQ---------GRRIFVVGDLNIAPAAIDRCDA-------GPDFAKNEFRIWFRSMLV 209
            +L+         GRR+ +VGD+N++   ID CD        G  F  N  R W   +L 
Sbjct: 170 RLLEERVEALLKAGRRVILVGDVNVSHRPIDHCDPDDSEDFGGESFEDNPSRQWLDQLLG 229

Query: 210 ES-------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
           +S       GG   D FR  HP R+ AYTCW + TGA   NYGTRID+IL     L    
Sbjct: 230 DSGEGGGSPGGLLIDSFRYFHPTRKGAYTCWNTLTGARPTNYGTRIDYILADRGLLPW-- 287

Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
                      V   DIL +                   +EGSDH PVY  L
Sbjct: 288 -----------VKAADILPE-------------------VEGSDHCPVYADL 309

This subfamily includes human APE2, Saccharomyces cerevisiae Apn2/Eth1, and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For examples, Ape1 and Ape2 in humans, and Apn1 and Apn2 in bakers yeast. Ape2 and Apn2/Eth1 are both found in this subfamily, and have the weaker AP endonuclease activity. Ape2 shows strong 3'-5' exonuclease and 3'-phosphodiesterase activities; it can reduce the mutagenic consequences of attack by reactive oxygen species by removing 3'-end adenine opposite from 8-oxoG, in addition to repairing 3'-damaged termini. Apn2/Eth1 exhibits AP endonuclease activity, but has 30-40 fold more active 3'-phosphodiesterase and 3'-5' exonuclease activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily. Length = 309
>gnl|CDD|197307 cd09073, ExoIII_AP-endo, Escherichia coli exonuclease III (ExoIII)-like apurinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|223780 COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233064 TIGR00633, xth, exodeoxyribonuclease III (xth) Back     alignment and domain information
>gnl|CDD|197319 cd09085, Mth212-like_AP-endo, Methanothermobacter thermautotrophicus Mth212-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III Back     alignment and domain information
>gnl|CDD|197321 cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|197320 cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|197336 cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information
>gnl|CDD|139971 PRK13911, PRK13911, exodeoxyribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|236970 PRK11756, PRK11756, exonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|197310 cd09076, L1-EN, Endonuclease domain (L1-EN) of the non-LTR retrotransposon LINE-1 (L1), and related domains Back     alignment and domain information
>gnl|CDD|219199 pfam06839, zf-GRF, GRF zinc finger Back     alignment and domain information
>gnl|CDD|197306 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily Back     alignment and domain information
>gnl|CDD|197318 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 621
COG0708261 XthA Exonuclease III [DNA replication, recombinati 100.0
PRK13911250 exodeoxyribonuclease III; Provisional 100.0
PRK11756268 exonuclease III; Provisional 100.0
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 100.0
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 100.0
PRK05421263 hypothetical protein; Provisional 99.84
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 99.83
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 99.7
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 99.68
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 99.65
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.64
KOG3873422 consensus Sphingomyelinase family protein [Signal 99.64
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 99.6
PTZ00297 1452 pantothenate kinase; Provisional 99.53
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 99.48
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 99.44
PF0683945 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc 99.38
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 99.34
KOG2338495 consensus Transcriptional effector CCR4-related pr 99.29
COG3021309 Uncharacterized protein conserved in bacteria [Fun 99.23
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 99.0
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 98.95
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 98.82
KOG0620361 consensus Glucose-repressible alcohol dehydrogenas 98.74
KOG05661080 consensus Inositol-1,4,5-triphosphate 5-phosphatas 98.07
KOG1956758 consensus DNA topoisomerase III alpha [Replication 97.43
COG2374798 Predicted extracellular nuclease [General function 97.11
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 95.49
KOG4399 325 consensus C2HC-type Zn-finger protein [General fun 94.54
COG5411460 Phosphatidylinositol 5-phosphate phosphatase [Sign 91.81
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-50  Score=407.75  Aligned_cols=243  Identities=37%  Similarity=0.675  Sum_probs=209.2

Q ss_pred             CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013            1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR   80 (621)
Q Consensus         1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K   80 (621)
                      |||+||||||||+++.+   ++++|.+.+||||||||||.....++...+...||+.++..      |.+||+|||||+|
T Consensus         1 mkI~SwNVNgiRar~~~---~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~------gqKgysGVailsr   71 (261)
T COG0708           1 MKIASWNVNGLRARLKK---LLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNH------GQKGYSGVAILSK   71 (261)
T ss_pred             CeeEEEehhhHHHHHHH---HHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEec------CcCCcceEEEEEc
Confidence            89999999999999986   99999999999999999999999988877778999776663      5589999999999


Q ss_pred             ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013           81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF  160 (621)
Q Consensus        81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~  160 (621)
                      .+          |..+..||.+.                    ...|.|||+|.+++..|.|+|+|+|++.....+|..+
T Consensus        72 ~~----------~~~v~~g~~~~--------------------~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~y  121 (261)
T COG0708          72 KP----------PDDVRRGFPGE--------------------EEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDY  121 (261)
T ss_pred             cC----------chhhhcCCCCC--------------------ccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHH
Confidence            83          44666666431                    1257899999999999999999999998756788999


Q ss_pred             HHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC--------CCCCchHHHHHHHHHHHHcCCceeeeecccC
Q 007013          161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH  223 (621)
Q Consensus       161 k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~--------~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~h  223 (621)
                      |++|+..|+         ++++|||||||++|.++|..++.        .+|.+.+ |.||..++. .|  |+|+||.+|
T Consensus       122 Kl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~ee-R~~~~~ll~-~G--~~D~~R~~~  197 (261)
T COG0708         122 KLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEE-RAWFRRLLN-AG--FVDTFRLFH  197 (261)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHH-HHHHHHHHH-cc--hhhhhHhhC
Confidence            999988876         79999999999999999877652        4677766 999999884 54  999999999


Q ss_pred             CCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCC
Q 007013          224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE  303 (621)
Q Consensus       224 P~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~  303 (621)
                      |.... ||||+++.++++.|.|.||||||+|+.+..             ++++|.|..+.+.+.               .
T Consensus       198 p~~~~-YTwW~YR~~~~~~n~G~RID~~l~S~~L~~-------------~~~~a~I~~~~rg~e---------------~  248 (261)
T COG0708         198 PEPEK-YTWWDYRANAARRNRGWRIDYILVSPALAD-------------RLKDAGIDREVRGWE---------------K  248 (261)
T ss_pred             CCCCc-ccccccccchhhhcCceeEEEEEeCHHHHH-------------HHHhcCccHHHhcCC---------------C
Confidence            99776 999999999888889999999999998765             789999998755432               4


Q ss_pred             CCCCcceEEEEe
Q 007013          304 GSDHAPVYMCLG  315 (621)
Q Consensus       304 gSDH~PV~~~L~  315 (621)
                      .||||||+++|.
T Consensus       249 pSDHaPV~~e~~  260 (261)
T COG0708         249 PSDHAPVWVELD  260 (261)
T ss_pred             CCCcCcEEEEec
Confidence            599999999986

>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription] Back     alignment and domain information
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair] Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
3g91_A265 1.2 Angstrom Structure Of The Exonuclease Iii Homol 7e-20
3fzi_A265 1.9 Angstrom Structure Of The Thermophilic Exonucle 7e-20
3g00_A265 Mth0212 In Complex With A 9bp Blunt End Dsdna At 1. 2e-19
2o3c_A282 Crystal Structure Of Zebrafish Ape Length = 282 4e-15
2jc5_A259 Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From 9e-14
4b5h_A259 Substate Bound Inactive Mutant Of Neisseria Ap Endo 1e-12
1ako_A268 Exonuclease Iii From Escherichia Coli Length = 268 3e-12
2o3h_A285 Crystal Structure Of The Human C65a Ape Length = 28 4e-12
2isi_A317 Crystal Structure Of Ape1 From Homo Sapiens In A Ne 6e-12
1e9n_A318 A Second Divalent Metal Ion In The Active Site Of A 6e-12
1bix_A287 The Crystal Structure Of The Human Dna Repair Endon 7e-12
1de8_B276 Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bo 8e-12
1dew_A279 Crystal Structure Of Human Ape1 Bound To Abasic Dna 8e-12
2jc4_A256 3'-5' Exonuclease (Nexo) From Neisseria Meningitidi 1e-10
2voa_A257 Structure Of An Ap Endonuclease From Archaeoglobus 3e-09
2j63_A467 Crystal Structure Of Ap Endonuclease Lmap From Leis 2e-07
4f1r_A293 Structure Analysis Of The Global Metabolic Regulato 9e-06
>pdb|3G91|A Chain A, 1.2 Angstrom Structure Of The Exonuclease Iii Homologue Mth0212 Length = 265 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 122/267 (45%), Gaps = 58/267 (21%)
Query: 1   MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
           +KI+++NVNGLR  V + G L+  ++    DI+C QE K   ++L   L   +GY SFF+
Sbjct: 4   LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61  CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
                   R GYSGVA + +V           P +  EGF             G+E F  
Sbjct: 62  PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPR-ADSEDTVRIQFKLQFFHVL---------QG 170
                 D+EGR  I D   F+L+N+Y P  A SE+  R+++KL+F+             G
Sbjct: 92  ------DTEGRIQIADFDDFLLYNIYFPNGAMSEE--RLKYKLEFYDAFLEDVNRERDSG 143
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 226
           R + + GD N A   ID      +   + F    R W     +E+G  + D FR  + + 
Sbjct: 144 RNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDP 200
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILC 253
            + YT W   T A + N G R+D+   
Sbjct: 201 GQ-YTWWSYRTRARERNVGWRLDYFFV 226
>pdb|3FZI|A Chain A, 1.9 Angstrom Structure Of The Thermophilic Exonuclease Iii Homologue Mth0212 Length = 265 Back     alignment and structure
>pdb|3G00|A Chain A, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7 Angstrom Length = 265 Back     alignment and structure
>pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape Length = 282 Back     alignment and structure
>pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From Neisseria Meningitidis Length = 259 Back     alignment and structure
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap Endonuclease In Presence Of Metal Ions Length = 259 Back     alignment and structure
>pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli Length = 268 Back     alignment and structure
>pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape Length = 285 Back     alignment and structure
>pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New Crystal Form Complexed With A Ligand Length = 317 Back     alignment and structure
>pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE, Ape1, And Its Implications For The Catalytic Mechanism Length = 318 Back     alignment and structure
>pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease Hap1 Suggests The Recognition Of Extra-Helical Deoxyribose At Dna Abasic Sites Length = 287 Back     alignment and structure
>pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To Abasic Dna Length = 276 Back     alignment and structure
>pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna Length = 279 Back     alignment and structure
>pdb|2JC4|A Chain A, 3'-5' Exonuclease (Nexo) From Neisseria Meningitidis Length = 256 Back     alignment and structure
>pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus Fulgidus Length = 257 Back     alignment and structure
>pdb|2J63|A Chain A, Crystal Structure Of Ap Endonuclease Lmap From Leishmania Major Length = 467 Back     alignment and structure
>pdb|4F1R|A Chain A, Structure Analysis Of The Global Metabolic Regulator Crc From Pseudomonas Aeruginos Length = 293 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 1e-53
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 3e-45
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 9e-45
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 5e-44
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 3e-43
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 9e-41
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 5e-36
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 4e-32
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 5e-32
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 2e-15
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 2e-08
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 4e-07
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 1e-06
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 2e-05
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 4e-05
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 6e-04
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467 Back     alignment and structure
 Score =  189 bits (481), Expect = 1e-53
 Identities = 70/362 (19%), Positives = 109/362 (30%), Gaps = 95/362 (26%)

Query: 1   MKIVTYNVNGLRQRVSQFGS-LRKLLDSFDADIICFQETKLRRQELKSDLVMA--DGYES 57
            K +T+NV GLR  + +  S LR  +++   D++C QETKL   E  ++  +   DGY  
Sbjct: 150 YKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSF 209

Query: 58  FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
                      + GYSG  T+ +                    T           +    
Sbjct: 210 VDHPCAF----KRGYSGTRTYMKNS--------TTVKGLHARCTRGFALPSEPQADAAAG 257

Query: 118 FSKDELLKIDSEGRCVIT----------DHGHFILFNVYGPRADSEDTVRIQFKLQFF-- 165
                    D EGR + T                L N Y   +      R+ +++Q F  
Sbjct: 258 SRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGL-TRLPYRVQSFDP 316

Query: 166 --------------------------HVLQGRRIFVVGDLNIAPAAIDRCDAGP--DFAK 197
                                                GDLN+A    DR  AG      +
Sbjct: 317 SMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQE 376

Query: 198 N-----EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
                 E R+ FR  +  +     D+FR  +P+    Y+ W         N G R+D+ +
Sbjct: 377 CSGFAPEERMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFV 434

Query: 253 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 312
                        S    + +V +C  +                       GSDH P  M
Sbjct: 435 V------------SSRLAS-YVVDCFPMPTVM-------------------GSDHCPFQM 462

Query: 313 CL 314
            +
Sbjct: 463 WM 464
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Length = 265 Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Length = 259 Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Length = 285 Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Length = 318 Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238 Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268 Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Length = 257 Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Length = 256 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Length = 245 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317 Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298 Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 100.0
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 100.0
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 100.0
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 100.0
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 100.0
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 100.0
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 100.0
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 100.0
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 100.0
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.97
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.96
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.95
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.94
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.92
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.92
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.91
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.9
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.89
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.84
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.83
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.82
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.77
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 99.7
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 99.56
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 99.54
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 99.53
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 99.51
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 99.35
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 99.35
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 99.21
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 98.87
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 98.69
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
Probab=100.00  E-value=1.1e-40  Score=338.57  Aligned_cols=242  Identities=35%  Similarity=0.630  Sum_probs=195.2

Q ss_pred             CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013            1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR   80 (621)
Q Consensus         1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K   80 (621)
                      |||+||||||++...++  .+.++|+.++|||||||||+.....+...+....||..|+...     +++||+|||||+|
T Consensus         4 l~i~s~Nv~g~~~~~~~--~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~-----~~~~~~Gvail~k   76 (265)
T 3g91_A            4 LKIISWNVNGLRAVHRK--GFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPA-----ERKGYSGVAMYTK   76 (265)
T ss_dssp             EEEEEEECSCHHHHHHH--THHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECB-----SSTTSCCEEEEES
T ss_pred             cEEEEEEcCCchhhhhh--hHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccC-----CCCCcCEEEEEEe
Confidence            69999999999987765  3999999999999999999988776654443468999887643     4467889999999


Q ss_pred             ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013           81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF  160 (621)
Q Consensus        81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~  160 (621)
                      .+          +..+..++.                     ....|.+||++.+++..+.|+|||+|+... ..+|..+
T Consensus        77 ~~----------~~~~~~~~~---------------------~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~~  124 (265)
T 3g91_A           77 VP----------PSSLREGFG---------------------VERFDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLKY  124 (265)
T ss_dssp             SC----------CSEEECCCS---------------------CHHHHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHHH
T ss_pred             cC----------hHHhccCCC---------------------CcccCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHHH
Confidence            73          333333331                     023578999999999999999999999886 4567777


Q ss_pred             HHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCceeeeecccCCCC
Q 007013          161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER  226 (621)
Q Consensus       161 k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~  226 (621)
                      +.+|++.|.         +.++||+||||+.+.++|..+..     .+|...+ +.+|+.++ +.|  |+|+||.+||..
T Consensus       125 r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~  200 (265)
T 3g91_A          125 KLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP  200 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC
Confidence            777766554         58999999999999988876542     4555544 78899988 665  999999999997


Q ss_pred             CCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCC
Q 007013          227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD  306 (621)
Q Consensus       227 ~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSD  306 (621)
                      . .||||+.+.+++..|.|+||||||++..+..             .+.++.|.+.                   ..+||
T Consensus       201 ~-~yT~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~~~~~~i~~~-------------------~~~SD  247 (265)
T 3g91_A          201 G-QYTWWSYRTRARERNVGWRLDYFFVNEEFKG-------------KVKRSWILSD-------------------VMGSD  247 (265)
T ss_dssp             C-CCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG-------------GEEEEEECTT-------------------CCSSS
T ss_pred             C-CCCCcCCCCCccccCceEEEEEEEECHHHHh-------------hhcEEEEeCC-------------------CCCCC
Confidence            6 6999999999998999999999999998754             6889999764                   36899


Q ss_pred             CcceEEEEeccC
Q 007013          307 HAPVYMCLGEVP  318 (621)
Q Consensus       307 H~PV~~~L~~~~  318 (621)
                      |+||+++|....
T Consensus       248 H~Pv~~~~~~~~  259 (265)
T 3g91_A          248 HCPIGLEIELLE  259 (265)
T ss_dssp             BCCEEEEEECCC
T ss_pred             cceEEEEhhhhh
Confidence            999999998544
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 621
d1akoa_268 d.151.1.1 (A:) DNA-repair enzyme exonuclease III { 8e-23
d1hd7a_275 d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human 2e-22
d2imqx1280 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug ( 2e-16
d2f1na1250 d.151.1.1 (A:1-250) Cytolethal distending toxin su 1e-12
d1vyba_236 d.151.1.1 (A:) Endonuclease domain of LINE-1 rever 9e-12
d1wdua_228 d.151.1.1 (A:) Endonuclease domain of TRAS1 retrot 3e-10
d1sr4b_261 d.151.1.1 (B:) Cytolethal distending toxin subunit 9e-09
d1zwxa1293 d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera 2e-07
d2a40b1260 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos 3e-07
d2ddra1299 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras 6e-07
d1i9za_345 d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission 1e-04
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]

 Score = 96.4 bits (238), Expect = 8e-23
 Identities = 53/323 (16%), Positives = 98/323 (30%), Gaps = 70/323 (21%)

Query: 1   MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
           MK V++N+NGLR R  Q      +++    D+I  QETK+       + V   GY  F+ 
Sbjct: 1   MKFVSFNINGLRARPHQL---EAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH 57

Query: 61  CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
             +                R   P                            E  +    
Sbjct: 58  GQKGHYGVALLTKETPIAVRRGFPG-------------------------DDEEAQRRII 92

Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-HVLQGRRIFVVGDL 179
              +        VI  +        +  +  ++       +      + +   + ++GD+
Sbjct: 93  MAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDM 152

Query: 180 NIAPAAIDRCDAGPDFAK----------NEFRIWFRSMLVESGGSFFDVFRSKHPERREA 229
           NI+P  +D      +  +           E R W   ++        D FR  +P+  + 
Sbjct: 153 NISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLM---SWGLVDTFRHANPQTADR 209

Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 289
           ++ +   +     N G RID +L + P                   E  I  + +  +  
Sbjct: 210 FSWFDYRSKGFDDNRGLRIDLLLASQPLAE-------------CCVETGIDYEIRSME-- 254

Query: 290 NAPRWKGGMSTRLEGSDHAPVYM 312
                        + SDHAPV+ 
Sbjct: 255 -------------KPSDHAPVWA 264
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Length = 280 Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Length = 228 Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Back     information, alignment and structure
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260 Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 345 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.98
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.97
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 99.95
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.92
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.89
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.82
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.81
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.77
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.77
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.76
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.66
d1hy9a_41 Satiety factor CART (cocaine and amphetamine regul 81.69
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of LINE-1 reverse transcriptase homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.7e-32  Score=266.02  Aligned_cols=224  Identities=25%  Similarity=0.482  Sum_probs=160.3

Q ss_pred             CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013            1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR   80 (621)
Q Consensus         1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K   80 (621)
                      |||+||||||++...++. .|.++|++++|||||||||+.......  .....++..++...     ...++.||||++|
T Consensus         6 ~kv~s~Nv~g~~~~~~~~-~i~~~i~~~~~DIi~LQE~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~g~~i~~k   77 (236)
T d1vyba_           6 ITILTLNINGLNSAIKRH-RLASWIKSQDPSVCCIQETHLTCRDTH--RLKIKGWRKIYQAN-----GKQKKAGVAILVS   77 (236)
T ss_dssp             EEEEEEECSCCCSHHHHH-HHHHHHHHHCCSEEEEECCCCCTTSGG--GCCCTTCCEEEEEC-----CSSSSCCEEEEEC
T ss_pred             eEEEEEEcCCccchhhHH-HHHHHHHHCCCeEEEEEcccCccccch--hhhhcccceEEEee-----ccccccceeeEee
Confidence            799999999998876653 599999999999999999987655443  22345566655543     3345679999999


Q ss_pred             ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEe----CcEEEEEEEcCCCCCchhH
Q 007013           81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSEDTV  156 (621)
Q Consensus        81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----~~~~LinVY~P~~~~~~~e  156 (621)
                      .++.+.      +..                            ...+.+++++.+..    ..+.++|+|+|+...   +
T Consensus        78 ~~~~~~------~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~---~  120 (236)
T d1vyba_          78 DKTDFK------PTK----------------------------IKRDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P  120 (236)
T ss_dssp             TTCCCE------EEE----------------------------EEECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H
T ss_pred             cccccc------ccc----------------------------ccccccccceeeeeeeccCcceeEEeccccccc---H
Confidence            853211      100                            12345666665432    469999999998653   2


Q ss_pred             HHHHHHHHHHHHc---CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCCCCcccC
Q 007013          157 RIQFKLQFFHVLQ---GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW  233 (621)
Q Consensus       157 R~~~k~~fl~~L~---g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~w  233 (621)
                        .+..+++..+.   +.++||+||||.++...|+.....  .... +.++...+.+.+  |.|+||.+++... .||||
T Consensus       121 --~~~~~~~~~~~~~~~~~~Il~GDfN~~~~~~d~~~~~~--~~~~-~~~~~~~~~~~~--~~d~~r~~~~~~~-~~~~~  192 (236)
T d1vyba_         121 --RFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQK--VNKD-TQELNSALHQAD--LIDIYRTLHPKST-EYTFF  192 (236)
T ss_dssp             --HHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTTCCC--CCHH-HHHHHHHHHHTT--EEEHHHHHCTTCC-CCSEE
T ss_pred             --HHHHhhhhhhcccccceeEEeeccccccchhhhccccc--chhh-HHHHHHHHHhhh--cccccceeccCCc-ccccc
Confidence              33444554544   889999999999888877755432  1222 455677777776  9999999998865 59998


Q ss_pred             CCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEEE
Q 007013          234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMC  313 (621)
Q Consensus       234 s~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~  313 (621)
                      ....+     .++||||||+++.+..             .+..+.|++.                    ..|||+||+++
T Consensus       193 ~~~~~-----~~~RiD~il~s~~~~~-------------~~~~~~i~~~--------------------~~SDH~pv~~~  234 (236)
T d1vyba_         193 SAPHH-----TYSKIDHIVGSKALLS-------------KCKRTEIITN--------------------YLSDHSAIKLE  234 (236)
T ss_dssp             ETTTT-----EEECCEEEEEEGGGGG-------------GEEEEEEECC--------------------SSSSSCEEEEE
T ss_pred             CCCCC-----CCceeEEEEEChHHHh-------------hceEEEECCC--------------------CCCCcccEEEE
Confidence            77544     4789999999987644             5778888764                    57999999999


Q ss_pred             Ee
Q 007013          314 LG  315 (621)
Q Consensus       314 L~  315 (621)
                      |.
T Consensus       235 lk  236 (236)
T d1vyba_         235 LR  236 (236)
T ss_dssp             EC
T ss_pred             eC
Confidence            84
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1hy9a_ g.3.17.1 (A:) Satiety factor CART (cocaine and amphetamine regulated transcript) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure