Citrus Sinensis ID: 007039
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 620 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T048 | 985 | Disease resistance protei | yes | no | 0.738 | 0.464 | 0.244 | 4e-17 | |
| O81825 | 919 | Probable disease resistan | no | no | 0.724 | 0.488 | 0.256 | 1e-15 | |
| Q42484 | 909 | Disease resistance protei | no | no | 0.608 | 0.414 | 0.237 | 2e-15 | |
| Q6DHL5 | 238 | Leucine-rich repeat-conta | yes | no | 0.230 | 0.600 | 0.309 | 6e-06 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.15 | 0.094 | 0.357 | 1e-05 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.217 | 0.133 | 0.309 | 2e-05 | |
| Q80TH2 | 1402 | Protein LAP2 OS=Mus muscu | yes | no | 0.229 | 0.101 | 0.345 | 2e-05 | |
| O35930 | 734 | Platelet glycoprotein Ib | no | no | 0.138 | 0.117 | 0.402 | 2e-05 | |
| Q96RT1 | 1412 | Protein LAP2 OS=Homo sapi | no | no | 0.219 | 0.096 | 0.342 | 2e-05 | |
| A4IIK1 | 997 | Malignant fibrous histioc | no | no | 0.322 | 0.200 | 0.286 | 3e-05 |
| >sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 124/507 (24%), Positives = 228/507 (44%), Gaps = 49/507 (9%)
Query: 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIA-----ISLPHRDIQELPER 55
MHDV+ A+ I + + + + + + I++D +A +SL + ++ LP+
Sbjct: 462 MHDVVRDFAIWIMSSSQ--DDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDL 519
Query: 56 LQCPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTL 113
++ ++ +L +GN + +V F + L++L G S PS SL RL +L +L
Sbjct: 520 VEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSL 579
Query: 114 CLDWC-ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172
L C +L + ++ L KLE+L L ++I + P + +L R + LDLS LE I
Sbjct: 580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639
Query: 173 VISKLSQLEELYMGNGFSGWEKVEGGS---NASLVELERLTELTTLEIEVPDAEIL--PP 227
V+S+LS LE L M + W V+G + A++ E+ L L L I + + L
Sbjct: 640 VVSRLSSLETLDMTSSHYRW-SVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKR 698
Query: 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287
+ L+++++ +G L + + RL I +++ Q + G LL T
Sbjct: 699 NTWIKRLKKFQLVVGSRY-----ILRTRHDKRRLT----ISHLNVSQVSIG--WLLAYTT 747
Query: 288 DLWLETLEGVQSVVHEL-DDGEGFPRLKRLLVTDC-----SEILHIVGSVRRVRCEVFPL 341
L L +G+++++ +L D +GF LK L + + S + + + + ++ L
Sbjct: 748 SLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQSSDILDL 807
Query: 342 LEALSLMFL--TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV 399
L L + L +LET Q L+II + CRKL+ L + L+++
Sbjct: 808 LPNLEELHLRRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEI 867
Query: 400 KVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWS- 458
++ CD L+ + + P + + P LVS+ N ++W
Sbjct: 868 EISYCDSLQNLHEALLYHQPFVPNLRVLKLRNLP------------NLVSICNWGEVWEC 915
Query: 459 -DQFQGIYCCQNLTKVTVWSCHRLKYL 484
+Q + I+C Q +C R+K +
Sbjct: 916 LEQVEVIHCNQLNCLPISSTCGRIKKI 942
|
Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 128/500 (25%), Positives = 218/500 (43%), Gaps = 51/500 (10%)
Query: 1 MHDVIHVVAV-SIATEERMFNVPNVADL------EKKMEETIQKDPIAISLPHRDIQELP 53
MHDV+ A+ ++++ F+ +A + K ++Q+ +SL ++ LP
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQR----VSLMANKLERLP 486
Query: 54 ERLQCPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112
+ ++ +L +GN + +V + F + L++L G+ +LP S L +L++
Sbjct: 487 NNV-IEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRS 545
Query: 113 LCLDWCE-LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP 171
L L C+ L ++ ++ L KL+ L L S I +LP + L+ L+ + +SN + L+ I
Sbjct: 546 LVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPA 605
Query: 172 NVISKLSQLEELYMGNGFSGW----EKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227
I +LS LE L M W E+ EG A+L E+ L L L I++ D
Sbjct: 606 GTILQLSSLEVLDMAGSAYSWGIKGEEREG--QATLDEVTCLPHLQFLAIKLLDVLSFSY 663
Query: 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287
+F S+ + K + F P+ S I V++ N LLQ
Sbjct: 664 EFDSLTKRLTKFQF------LFSPIRSVSPPGTGEGCLAISDVNV--SNASIGWLLQHVT 715
Query: 288 DLWLETLEGVQSVVHEL--DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345
L L EG+ + L F +K L + + G ++ ++FP LE L
Sbjct: 716 SLDLNYCEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCESQL--DLFPNLEEL 773
Query: 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS-MAKNLLRLQKVKVEDC 404
SL + NLE+I L+++ V CR+LK LFS +A L LQ++KV C
Sbjct: 774 SLDNV-NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSC 832
Query: 405 DDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGI 464
L+ + + P D + P+L ++L L ++ L +D+
Sbjct: 833 LRLEELF--NFSSVPV-----------DFCAESLLPKLTVIKLKYLPQLRSLCNDRV--- 876
Query: 465 YCCQNLTKVTVWSCHRLKYL 484
++L + V SC LK L
Sbjct: 877 -VLESLEHLEVESCESLKNL 895
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Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 113/476 (23%), Positives = 194/476 (40%), Gaps = 99/476 (20%)
Query: 1 MHDVIHVVAVSIATEERMFNV-----PNVADLEKKMEETIQKDPIAISLPHRDIQELPER 55
MH+V+ A+ +A+E+ + P++ E E + + ISL IQ LPE+
Sbjct: 471 MHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAEN-WRQALVISLLDNRIQTLPEK 529
Query: 56 LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115
L CP L +L + + ++ FF M L+VL + +P S+ L+ L L
Sbjct: 530 LICPKLTTLML-QQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHL-- 586
Query: 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175
S++ + I+ LP E+G L +L+ LDL +L+ I + I
Sbjct: 587 --------------------SMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAIC 626
Query: 176 KLSQLEELYMGNGFSGWEKVEGGSNAS----LVELERLTELTTLEIEVPDAEILPPDFVS 231
LS+LE L + ++GWE G + + +LE L LTTL I V E L F
Sbjct: 627 WLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEF 686
Query: 232 VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT-EDLW 290
L ++ I +E + LL + S + ++++SI +D ++ E+ W
Sbjct: 687 GALHKH---IQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDW 743
Query: 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350
L +LE L+L L
Sbjct: 744 LPSLE------------------------------------------------VLTLHSL 755
Query: 351 TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI 410
NL + + + +D N+R IN+ C KLK + S + L +L+ +++ DC +++ +
Sbjct: 756 HNLTRVWGNSVSQD-CLRNIRCINISHCNKLK---NVSWVQKLPKLEVIELFDCREIEEL 811
Query: 411 I----GPDMEKPPTTQGFIEINAEDDP------VHQVTFPRLEELELVSLTNIKKL 456
I P +E P + D P + +F ++E L + + +KKL
Sbjct: 812 ISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRVKKL 867
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Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 33 ETIQKDPIAISLPHRDIQELPERLQ--CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL 90
ET QK + L + + E PE LQ NL+ L N ++ F + LK
Sbjct: 11 ETSQKTGV-FQLTGKGLTEFPEDLQKLTANLRTVDL---SNNKIEELPAFIGSFQHLKSF 66
Query: 91 QFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEI 149
+SLP+ +G+L L+TL L+ +L + ++IGQLK L LSL+ + + P +
Sbjct: 67 TISCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFKEFPSGL 126
Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE 181
G L +L +LDLS + P +++L +E
Sbjct: 127 GTLRQLDVLDLSKNQI--RVVPAEVAELQAIE 156
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Danio rerio (taxid: 7955) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 90 LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVE 148
+ F + SS PS L + ++L+ L L + +L + ++IG L L L L+ +N LP
Sbjct: 509 IGFAAVVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPER 568
Query: 149 IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
+ +L LQ LD+ NC+ L + P SKLS L L
Sbjct: 569 LCKLQNLQTLDVHNCYSLNCL-PKQTSKLSSLRHL 602
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 73/171 (42%), Gaps = 36/171 (21%)
Query: 51 ELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIG------------- 96
+P PNL+L L+T G D F + L+ GIG
Sbjct: 298 SIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIA 357
Query: 97 ----------------SSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138
S S+P +G LINLQ L LD L+ ++G+L L LSL
Sbjct: 358 NLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSL- 416
Query: 139 YSN--INQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+SN +P IG +T L+ LDLSN + E I P + S L EL++G+
Sbjct: 417 FSNRLSGGIPAFIGNMTMLETLDLSNNGF-EGIVPTSLGNCSHLLELWIGD 466
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 42 ISLPHRDIQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS--- 97
+SLP D+ LP + NL L L NG + F E ++ KVL
Sbjct: 74 LSLPDNDLTTLPASIA--NLINLRELDVSKNGIQE----FPENIKNCKVLTIVEASVNPI 127
Query: 98 SSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
S LP +L+NL L L+ L + A G+L KL+IL L + + LP + +LT+L+
Sbjct: 128 SKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLE 187
Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GN------GFSG 191
LDL + + EV P V+ +LS L E +M GN GF G
Sbjct: 188 RLDLGSNEFTEV--PEVLEQLSGLREFWMDGNRLTFIPGFIG 227
|
Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated ERBB2 'Tyr-1248' receptor, it may contribute to stabilize this unphosphorylated state. Mus musculus (taxid: 10090) |
| >sp|O35930|GP1BA_MOUSE Platelet glycoprotein Ib alpha chain OS=Mus musculus GN=Gp1ba PE=2 SV=2 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
+SL +L L LD CEL + G+L KLE L L+++N+ LP L L LD+S
Sbjct: 65 ASLVHFTHLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLPSLGWALPALTTLDVS 124
Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNG 188
L ++P V+ LSQL+ELY+ N
Sbjct: 125 FN-KLGSLSPGVLDGLSQLQELYLQNN 150
|
GP-Ib, a surface membrane protein of platelets, participates in the formation of platelet plugs by binding to the A1 domain of vWF, which is already bound to the subendothelium. Mus musculus (taxid: 10090) |
| >sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 42 ISLPHRDIQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS--- 97
+SLP D+ LP + NL L L NG + F E ++ KVL
Sbjct: 74 LSLPDNDLTTLPASIA--NLINLRELDVSKNGIQE----FPENIKNCKVLTIVEASVNPI 127
Query: 98 SSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
S LP +L+NL L L+ L + A G+L KL+IL L + + LP + +LT+L+
Sbjct: 128 SKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLE 187
Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM 185
LDL + + EV P V+ +LS L+E +M
Sbjct: 188 RLDLGSNEFTEV--PEVLEQLSGLKEFWM 214
|
Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated 'Tyr-1248' of receptor ERBB2, it may contribute to stabilize this unphosphorylated state. Homo sapiens (taxid: 9606) |
| >sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 20/220 (9%)
Query: 31 MEETIQKDPI--AISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGL 87
+ +T+Q P + L H ++ P++L P L+ L GN + M+ L
Sbjct: 162 LPDTMQGLPSLRTLDLDHNELCSFPQQLFHVPALEE--LDFSGNKMLGSLPEGIRSMQSL 219
Query: 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA-AIGQLKKLEILSLAYSNINQLP 146
K+L LP S+ L+NL++L LD L + G L+KL++L+++ + P
Sbjct: 220 KILWLSSTSLCLLPDSICELVNLESLMLDNNNLHTLPEGFGALQKLKMLNVSSNAFQDFP 279
Query: 147 VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL 206
V + QL L+ L +S V+ P VIS +++L L++ N + S+VEL
Sbjct: 280 VPLLQLVDLEELYMSRNRL--VVLPEVISCMTKLVTLWLDNNRIRYLP------DSIVEL 331
Query: 207 ERLTELTTLEIEVPDAEILPPDFVSVELQRYKI-RIGDGP 245
L EL ++ ILP DF +L + I +I D P
Sbjct: 332 SFLEELV---LQGNQIAILPDDF--GKLSKVNIWKIKDNP 366
|
Xenopus tropicalis (taxid: 8364) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 620 | ||||||
| 255563252 | 1603 | Disease resistance protein RPS5, putativ | 0.961 | 0.371 | 0.403 | 1e-107 | |
| 224111296 | 1315 | cc-nbs-lrr resistance protein [Populus t | 0.961 | 0.453 | 0.395 | 1e-105 | |
| 224111284 | 1340 | cc-nbs-lrr resistance protein [Populus t | 0.961 | 0.444 | 0.402 | 1e-100 | |
| 255542484 | 2460 | phosphoprotein phosphatase, putative [Ri | 0.966 | 0.243 | 0.393 | 1e-100 | |
| 224110992 | 2359 | cc-nbs-lrr resistance protein [Populus t | 0.964 | 0.253 | 0.377 | 9e-98 | |
| 224143316 | 1337 | cc-nbs-lrr resistance protein [Populus t | 0.961 | 0.445 | 0.394 | 6e-97 | |
| 255574526 | 1232 | Disease resistance protein RFL1, putativ | 0.937 | 0.471 | 0.397 | 9e-89 | |
| 359488103 | 1530 | PREDICTED: disease resistance protein At | 0.943 | 0.382 | 0.360 | 4e-87 | |
| 359488027 | 1520 | PREDICTED: disease resistance protein At | 0.909 | 0.371 | 0.379 | 4e-86 | |
| 147865073 | 1694 | hypothetical protein VITISV_021876 [Viti | 0.946 | 0.346 | 0.360 | 7e-86 |
| >gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 286/708 (40%), Positives = 388/708 (54%), Gaps = 112/708 (15%)
Query: 1 MHDVIHVVAVSIATE-ERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
+HDV+ VA+SIA+ + +F V N A L++ + + K ISLP+ DI LPE L+CP
Sbjct: 466 IHDVVRDVAISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECP 525
Query: 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
L+LFLL+T+ + ++V D FE + L+VL F G+ SSLP SLG L NL TLCLDWC
Sbjct: 526 ELELFLLFTQ-DISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCA 584
Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
L D+A IG+L L ILS +S+I +LP EI QLT+L+ LDLS+C L+VI +IS+L+Q
Sbjct: 585 LRDVAIIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQ 644
Query: 180 LEELYMGNGFSGW--EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRY 237
LEELYM N F W + + NASL ELE L LTTLEI V DA+ILP D +L+R+
Sbjct: 645 LEELYMNNSFDLWDVQGINNQRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERF 704
Query: 238 KIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV 297
+I IGD D SR + LK + SI E+ G +LL+ TEDL+L ++G+
Sbjct: 705 RIFIGDVWSGTGD-----YGTSRTLKLK-LNTSSIHLEH-GLSILLEVTEDLYLAEVKGI 757
Query: 298 QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETIC 357
+SV+++L D +GF +LK L V + EI +I+ RR C FP+LE+L L L +LE IC
Sbjct: 758 KSVLYDL-DSQGFTQLKHLDVQNDPEIQYIIDPNRRSPCNAFPILESLYLDNLMSLEKIC 816
Query: 358 YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG----- 412
+L SFS LR + V C +LK LFSFSM + LL+LQ++KV DC +L+ I+
Sbjct: 817 CGKLTTG-SFSKLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLEEIVACGSED 875
Query: 413 --PDMEKPPTTQ------------------------------------GFIEINAE---D 431
D E TQ G EI +
Sbjct: 876 TDNDYEAVKLTQLCSLTLKRLPMFKSFCSKKKVSPISLRVQKQLTTDTGLKEIAPKGELG 935
Query: 432 DPV----HQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSY 487
DP+ FP LE LEL S+ +K+ DQ I NL + V C LKYLF+
Sbjct: 936 DPLPLFNEMFCFPNLENLELSSIA-CEKICDDQLSAI--SSNLMSLIVERCWNLKYLFTS 992
Query: 488 SMVNSLGQLQHLEIRNCRSIEGVVNTTTL--GGRDEFKVFPKLHYLSLHWLPKLSSFA-- 543
S+V +L L+ LE+ +C S+EG++ L R+ K+FP+L +L L LP ++ F
Sbjct: 993 SLVKNLLLLKRLEVFDCMSVEGIIVAEELVEEERNRKKLFPELDFLKLKNLPHITRFCDG 1052
Query: 544 -------------------------SPE-DVI--------------HTEMQPQSLFDEKV 563
SP D+I HTE QP LF+EKV
Sbjct: 1053 YPVEFSSLRKLLIENCPALNMFVSKSPSADMIESREAKGMNSEKNHHTETQP--LFNEKV 1110
Query: 564 RLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFP 611
PSLE + +S D LR+IWH+QL + SF KLK ++I+GC L IFP
Sbjct: 1111 AFPSLEEIELSYIDNLRRIWHNQLDAGSFCKLKIMRINGCKKLRTIFP 1158
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 278/703 (39%), Positives = 387/703 (55%), Gaps = 107/703 (15%)
Query: 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKM-EETIQKDPIAISLPHRDIQELPERLQCP 59
MHDV+H A+S+A R +V VAD K+ + + AISLP R I +LP L+CP
Sbjct: 460 MHDVVHSFAISVAL--RDHHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECP 517
Query: 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
NL FLL + + +Q+ D FF M+ LK+L + S LPSSL L NLQTLCLD C
Sbjct: 518 NLNSFLLLNK-DPSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCV 576
Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
L DI+ IG+L KL++LSL SNI +LP EIG++TRLQLLDLSNC LEVI+PN +S L++
Sbjct: 577 LEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTR 636
Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPDFVSV--E 233
LE+LYMGN F WE EG S NA L EL+ L+ L+TL +++ DA+ +P D S
Sbjct: 637 LEDLYMGNSFVKWE-TEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQN 695
Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
L+R++I IGDG + VK SR + L K +++Q +G LL+ TE+L L+
Sbjct: 696 LERFRIFIGDGWD-----WSVKDATSRTLKL---KLNTVIQLEEGVNTLLKITEELHLQE 747
Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
L GV+S++++L DGEGFP+L+ L V +C + +I+ S+R F L++L L L NL
Sbjct: 748 LNGVKSILNDL-DGEGFPQLRHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNL 806
Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
E IC+ QL +S NLRI+ V+SC +LK LFS SMA+ L+RL+++ + DC ++ ++
Sbjct: 807 EKICHGQLMA-ESLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865
Query: 414 DMEKP---------------------PTTQGF---IEINAEDDPVHQVTFPRLEELELVS 449
+ E P F +E +++ ++ E+V+
Sbjct: 866 ESENDAADGEPIIEFTQLRRLTLQCLPQFTSFHSNVEESSDSQRRQKLLASEARSKEIVA 925
Query: 450 ------------------------LTNIK--KLWSDQ--FQGIYCCQNLTKVTVWSCHRL 481
L++IK K+W DQ Q C +NL + V +C L
Sbjct: 926 GNELGTSMSLFNTKILFPNLEDLKLSSIKVEKIWHDQPSVQS-PCVKNLASIAVENCRNL 984
Query: 482 KYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLG-GRDEFKV-FPKLHYLSLHWLPKL 539
YL + SMV SL QL+ LEI NC+S+E +V +G G+ K+ FPKL LSL LPKL
Sbjct: 985 NYLLTSSMVESLAQLKKLEICNCKSMEEIVVPEDIGEGKMMSKMLFPKLLILSLIRLPKL 1044
Query: 540 SSFAS-----------------PE-----------DV---IHTEMQPQSLFDEKVRLPSL 568
+ F + PE DV + +LFD+KV P L
Sbjct: 1045 TRFCTSNLLECHSLKVLTVGNCPELKEFISIPSSADVPAMSKPDNTKSALFDDKVAFPDL 1104
Query: 569 EVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFP 611
E I+E D L+ IWH +L S SF KLK L + NLLNIFP
Sbjct: 1105 EEFLIAEMDNLKVIWHSELHSDSFCKLKTLHVVLVKNLLNIFP 1147
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 279/694 (40%), Positives = 386/694 (55%), Gaps = 98/694 (14%)
Query: 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKMEET-IQKDPIAISLPHRDIQELPERLQCP 59
MHDV+ A S+A+ R +V VAD K+ + + + AISLP+R I +LP L+CP
Sbjct: 460 MHDVVQSFAFSVAS--RDHHVLIVADEFKEWPTSDVLQQYTAISLPYRKIPDLPAILECP 517
Query: 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
NL F+L + + +Q+ D+FF M+ LKVL + S LPSSL L NLQTLCLD C
Sbjct: 518 NLNSFILLNK-DPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCV 576
Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
L DI+ +G+LKKL++LSL S+I LP EIG+LTRL LLDLSNC LEVI+PNV+S L++
Sbjct: 577 LEDISIVGELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTR 636
Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPD--FVSVE 233
LEELYMGN F WE EG S NA L EL+RL+ L TL +++ DA+ + D F+ +
Sbjct: 637 LEELYMGNSFVKWE-TEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQK 695
Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
L+R++I IGDG + VK SR + L K +++Q + LL+ TE+L L+
Sbjct: 696 LERFRIFIGDGWD-----WSVKYATSRTLKL---KLNTVIQLEEWVNTLLKSTEELHLQE 747
Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
L+GV+S++++L DGE FPRLK L V +C + +I+ S+R F L++L L L NL
Sbjct: 748 LKGVKSILNDL-DGEDFPRLKHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNL 806
Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
E IC+ QL +S LRI+ V+SC +LK LFS SMA+ L+RL+++ + DC ++ ++
Sbjct: 807 EKICHGQLMA-ESLGKLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865
Query: 414 DMEKPPTTQGFIEIN-------------------------AEDDPVHQVT---------- 438
+ E IE A D ++
Sbjct: 866 ESENDTADGEPIEFAQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTSMS 925
Query: 439 -------FPRLEELELVSLTNIKKLWSDQ-FQGIYCCQNLTKVTVWSCHRLKYLFSYSMV 490
FP LE+L+L S+ ++K+W DQ C +NL + V SC L YL + SMV
Sbjct: 926 LFNTKILFPNLEDLKLSSI-KVEKIWHDQPAVQPPCVKNLASMVVESCSNLNYLLTSSMV 984
Query: 491 NSLGQLQHLEIRNCRSIEGVVNTTTLG-GRDEFKV-FPKLHYLSLHWLPKLSSFAS---- 544
SL QL+ LEI NC S+E +V +G G+ K+ FPKLH L L LPKL+ F +
Sbjct: 985 ESLAQLERLEICNCESMEEIVVPEGIGEGKMMSKMLFPKLHLLELSGLPKLTRFCTSNLL 1044
Query: 545 -------------PE-----------DV---IHTEMQPQSLFDEKVRLPSLEVLHISEAD 577
PE DV + + FD+KV P LEV I E D
Sbjct: 1045 ECHSLKVLMVGNCPELKEFISIPSSADVPVMSKPDNTKSAFFDDKVAFPDLEVFLIFEMD 1104
Query: 578 KLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFP 611
L+ IWH++L S SF +LK L + NLLNIFP
Sbjct: 1105 NLKAIWHNELHSDSFCELKILHVGHGKNLLNIFP 1138
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 270/686 (39%), Positives = 370/686 (53%), Gaps = 87/686 (12%)
Query: 1 MHDVIHVVAVSIATEER-MFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
MHDV+H A +A+ + +F V + LE+ E+ I + AISLP I +LPE +CP
Sbjct: 415 MHDVVHNFATLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECP 474
Query: 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
+LQ FLLY + + +++ D+FF M+ LK++ + S +P SL L NLQTLCLD C
Sbjct: 475 DLQSFLLYNK-DSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCT 533
Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
L DIAAIG+LKKL++LS S + QLP E+G+LTRLQLLDLS C LEVI V+S L++
Sbjct: 534 LEDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTK 593
Query: 180 LEELYMGNGFSGWEKVEGG---SNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQR 236
LEELYMGN F WE E +NASL EL+ L L TLE+ + +AEILP D S +L
Sbjct: 594 LEELYMGNSFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDL 653
Query: 237 YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296
YK+ IG E K EASR + LK + I + K+LL TEDL+L+ LEG
Sbjct: 654 YKVFIG-----EEWSWFGKYEASRTLKLKLNSSIEI----EKVKVLLMTTEDLYLDELEG 704
Query: 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV-FPLLEALSLMFLTNLET 355
V++V++ELD G+GFP+LK L + + SEI +IV + + FP LE+L + L NL
Sbjct: 705 VRNVLYELD-GQGFPQLKHLHIQNSSEIQYIVDCLSMGNHYIAFPRLESLLVDNLNNLGQ 763
Query: 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM------ 409
ICY QL SFS LR + V+ C LK LF FSM + L++L+++ V C+ ++
Sbjct: 764 ICYGQLMSG-SFSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCNIMEEIVVEEI 822
Query: 410 --------IIGP------DMEKPPTTQGFI---------------EINAEDDPV---HQV 437
II P +E P F +I +E V ++
Sbjct: 823 EDDSGRDEIIKPIRLRTLTLEYLPRFTSFCSQRMQKLAGLDAGCAQIISETPSVLFGQKI 882
Query: 438 TFPRLEELELVSLTNIKKLWSDQF-QGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQL 496
F L L+L S+ N++K+W +Q + QNLT + V C +L YLF+ SMV +L QL
Sbjct: 883 EFSNLLNLKLSSINNMEKIWRNQVKEPPSSVQNLTSLIVEGCGKLSYLFTSSMVENLSQL 942
Query: 497 QHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFA------SPE-DVI 549
++LEI +C +E ++ L + FP LH L L LP L F P + +
Sbjct: 943 EYLEISDCSFMEEIIVAEGLTKHNSKLHFPILHTLKLKSLPNLIRFCFGNLIECPSLNAL 1002
Query: 550 HTEMQPQ------------------------SLFDEKVRLPSLEVLHISEADKLRKIWHH 585
E P+ +LFDEKV P LE L I + LR IW
Sbjct: 1003 RIENCPRLLKFISSSASTNMEANRGGRETNSTLFDEKVSFPILEKLEIVYMNNLRMIWES 1062
Query: 586 QLASKSFSKLKKLKISGCNNLLNIFP 611
+ SF KLK +KI C L+ IFP
Sbjct: 1063 EDRGDSFCKLKIVKIQNCKELVTIFP 1088
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 364 bits (934), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 277/734 (37%), Positives = 383/734 (52%), Gaps = 136/734 (18%)
Query: 4 VIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQL 63
+H AVSIA + K+++ Q+ I L H +I ELP L+CP L L
Sbjct: 461 AVHDAAVSIADRYHHVLTTDNEIQVKQLDNDAQRQLRQIWL-HGNISELPADLECPQLDL 519
Query: 64 FLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI 123
F ++ + N ++++D+FF M L+VL + SSLPSS+ L NLQTLCLD L DI
Sbjct: 520 FQIFND-NHYLKIADNFFSRMHKLRVLGLSNLSLSSLPSSVSLLENLQTLCLDRSTLDDI 578
Query: 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
+AIG LK+LEILS SNI QLP EI QLT+L+LLDLS+C+ LEVI P+V SKLS LEEL
Sbjct: 579 SAIGDLKRLEILSFFQSNIKQLPREIAQLTKLRLLDLSDCFELEVIPPDVFSKLSMLEEL 638
Query: 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGD 243
YM N F W+ EG +NASL ELE L+ LT EI + D+++LP + L++Y++ IGD
Sbjct: 639 YMRNSFHQWD-AEGKNNASLAELENLSHLTNAEIHIQDSQVLPYGIIFERLKKYRVCIGD 697
Query: 244 GPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHE 303
+ ++D ++L + I N G +MLL RTEDL+L +EGV +++ E
Sbjct: 698 --DWDWDGAYEMLRTAKLKL-----NTKIDHRNYGIRMLLNRTEDLYLFEIEGV-NIIQE 749
Query: 304 LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE 363
L D EGFP LK L + + EI +I+ ++ V FP+LE+L L L++L+ IC+ LR
Sbjct: 750 L-DREGFPHLKHLQLRNSFEIQYIISTMEMVSSNAFPILESLILYDLSSLKKICHGALRV 808
Query: 364 DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDME------- 416
+SF+ LRII V+ C KL LFSF +A+ L +LQK+K+ C ++ ++ + +
Sbjct: 809 -ESFAKLRIIAVEHCNKLTNLFSFFVARGLSQLQKIKIAFCMKMEEVVAEESDELGDQNE 867
Query: 417 --------------------------------------KPPTTQGFI-EINAEDD---PV 434
KP T+ EI +ED+ P
Sbjct: 868 VVDVIQFTQLYSLSLQYLPHLMNFYSKVKPSSLSRTQPKPSITEARSEEIISEDELRTPT 927
Query: 435 H----QVTFPRLEELELVSLTNIKKLWSDQFQGIYCC-QNLTKVTVWSCHRLKYLFSYSM 489
++ FP LE+L L ++ NI KLW+DQ I QNL ++ V C LKYLF S+
Sbjct: 928 QLFNEKILFPNLEDLNLYAI-NIDKLWNDQHPSISVSIQNLQRLVVNQCGSLKYLFPSSL 986
Query: 490 VNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDE----FKVFPKLHYLSLHWLPKLSSF--- 542
VN L QL+HL I NC S+E ++ +GG E VFPKL ++ L LPKL F
Sbjct: 987 VNILVQLKHLSITNCMSVEEII---AIGGLKEEETTSTVFPKLEFMELSDLPKLRRFCIG 1043
Query: 543 --------------ASPE------DVIHTEMQP-----------------QSLFDEK--- 562
A PE D + QSLF EK
Sbjct: 1044 SSIECPLLKRMRICACPEFKTFAADFSCANINDGNELEEVNSEENNNNVIQSLFGEKCLN 1103
Query: 563 ----------------VRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNL 606
V PSL + IS D L KIWH+ LA+ SF +L+ +KI GC +
Sbjct: 1104 SLRLSNQGGLMQKFVSVIFPSLAEIEISHIDNLEKIWHNNLAAGSFCELRSIKIRGCKKI 1163
Query: 607 LNIFPPLVRLLYSF 620
+NIFP + L+ SF
Sbjct: 1164 VNIFPSV--LIRSF 1175
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 274/694 (39%), Positives = 385/694 (55%), Gaps = 98/694 (14%)
Query: 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKM-EETIQKDPIAISLPHRDIQELPERLQCP 59
MHDV+ A+S+A R +V VAD K+ + + AISLP R I +LP L+CP
Sbjct: 460 MHDVVRSFAISVAL--RDHHVLIVADEFKEWPTNDVLQQYTAISLPFRKIPDLPAILECP 517
Query: 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
NL FLL + + +Q+ ++FF M+ LKVL G+ S LPSSL L NLQTLCLD+C
Sbjct: 518 NLNSFLLLST-DPSLQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLENLQTLCLDFCV 576
Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
L DI+ +G+LKKL++LSL S+I LP EIG+LTRL LLDLSNC LEVI+PNV+S L++
Sbjct: 577 LEDISIVGELKKLKVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTR 636
Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPDFVSV--E 233
LEELYMGN F WE EG S +A L EL+ L L TL++++ DA+ +P D +
Sbjct: 637 LEELYMGNSFLKWE-AEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQK 695
Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
L+R++I IGDG + VK SR + L K +++Q + LL+ TE+L L+
Sbjct: 696 LERFRIFIGDGWD-----WSVKYATSRTLKL---KLNTVIQLEERVNTLLKITEELHLQE 747
Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
L GV+S++++LD+ EGF +LK L V +C + +I+ S+R F L++L L L NL
Sbjct: 748 LNGVKSILNDLDE-EGFCQLKDLHVQNCPGVQYIINSMRMGPRTAFLNLDSLFLENLDNL 806
Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
E IC+ QL +S NLRI+ V+SC +LK LFS S+A+ ++RL+++ + DC ++ ++
Sbjct: 807 EKICHGQLMA-ESLGNLRILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVVAE 865
Query: 414 DMEKPPTTQGFIEIN-------------------------AEDDPVHQVT---------- 438
+ E IE A D ++
Sbjct: 866 ESENDTADGEPIEFTQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTSMS 925
Query: 439 -------FPRLEELELVSLTNIKKLWSDQFQ-GIYCCQNLTKVTVWSCHRLKYLFSYSMV 490
FP+LE+L L S+ ++K+W DQ C +NL + V SC L YL + SMV
Sbjct: 926 LFNTKILFPKLEDLMLSSI-KVEKIWHDQHAVQPPCVKNLASIVVESCSNLNYLLTSSMV 984
Query: 491 NSLGQLQHLEIRNCRSIEGVVNTTTLG-GRDEFKV-FPKLHYLSLHWLPKLSSFAS---- 544
SL QL+ LEI NC+S+E +V +G G+ K+ FPKLH LSL LPKL+ F +
Sbjct: 985 ESLAQLKSLEICNCKSMEEIVVPEGIGEGKMMSKMLFPKLHILSLIRLPKLTRFCTSNLL 1044
Query: 545 -------------PE-----------DV---IHTEMQPQSLFDEKVRLPSLEVLHISEAD 577
PE DV + +LFD+KV P+L V E D
Sbjct: 1045 ECHSLKVLTLGKCPELKEFISIPSSADVPAMSKPDNTKSALFDDKVAFPNLVVFVSFEMD 1104
Query: 578 KLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFP 611
L+ IWH++L SF +LK L + NLLNIFP
Sbjct: 1105 NLKVIWHNELHPDSFCRLKILHVGHGKNLLNIFP 1138
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 334 bits (856), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 261/657 (39%), Positives = 362/657 (55%), Gaps = 76/657 (11%)
Query: 1 MHDVIHVVAVSIA-TEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
+HD+I AVSIA E+++F + N LE +E K ISLP ++ +LPE L+ P
Sbjct: 454 IHDLIQDFAVSIAYREQQVFTINNYIRLEVWPDEDALKSCTRISLPCLNVVKLPEVLESP 513
Query: 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
NL+ LL TE +++ FF+G+ LKVL F G+ SSLP SLG L +L+TLCLD C
Sbjct: 514 NLEFLLLSTE-EPSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLEHLRTLCLDHCL 572
Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
L DIA IG+LKKLEIL+ A+S+I +LP EIG+L+RL+LLDLS+C L V NV+S+L
Sbjct: 573 LHDIAIIGELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNVFPANVLSRLCL 632
Query: 180 LEELYMGNGFSGWEKVEG---GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQR 236
LEELYM N F W K+EG SNASL EL L+ LT+LEI++ DA ILP D + +LQR
Sbjct: 633 LEELYMANSFVRW-KIEGLMNQSNASLDELVLLSHLTSLEIQILDARILPRDLFTKKLQR 691
Query: 237 YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296
YKI IG DE+D E SR++ LK SI E + L+ T+DL L G
Sbjct: 692 YKILIG----DEWD-WNGHDETSRVLKLK--LNTSIHSEYE-VNQFLEGTDDLSLADARG 743
Query: 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETI 356
V S+++ L + EGFP+LKRL+V +C EI +V + V FPLL++L L L NLE
Sbjct: 744 VNSILYNL-NSEGFPQLKRLIVQNCPEIHCLVNASESVPTVAFPLLKSLLLENLMNLEKF 802
Query: 357 CYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII---GP 413
C+ +L SFS LR I V SC +LK L SFSM + L++LQ+++V DC ++ I G
Sbjct: 803 CHGELV-GGSFSELRSIKVRSCNELKNLLSFSMVRFLMQLQEMEVIDCRNVMEIFKYEGA 861
Query: 414 D-----------------MEKPPTTQGFI-------------EINAEDD-----PVHQVT 438
D +E+ P F EI +E D P+ QV
Sbjct: 862 DSDIEDKAAALTRLRSLTLERLPKLNSFCSIKEPLTIDPGLEEIVSESDYGPSVPLFQV- 920
Query: 439 FPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQH 498
P LE+L L S+ + +W + C +L + V +C KYLF+ SM+ S +L+
Sbjct: 921 -PTLEDLILSSIP-CETIWHGELST--ACSHLKSLIVENCRDWKYLFTLSMIRSFIRLEK 976
Query: 499 LEIRNCRSIEGVVNTTTLGGRDEFK--VFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQ 556
LEI NC +EG++ T + +FP+L++L L L +SS +I
Sbjct: 977 LEICNCEFMEGIIRTEEFSEEEGMIKLMFPRLNFLKLKNLSDVSSLRIGHGLIEC----- 1031
Query: 557 SLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSF-SKLKKLKISGCNNLLNIFPP 612
PSL L ++ + L+ IW + F ++ LK+ C NL N+ P
Sbjct: 1032 ---------PSLRHLELNRLNDLKNIWSRNIHFDPFLQNVEILKVQFCENLTNLAMP 1079
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 249/691 (36%), Positives = 351/691 (50%), Gaps = 106/691 (15%)
Query: 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAIS---LPHRDIQELPERLQ 57
MHD++ A IA+E+ +V ++EE + D + ++ L H DI ELPE L
Sbjct: 464 MHDLVRSTARKIASEQH--HVFTHQKTTVRVEEWSRIDELQVTWVKLHHCDIHELPEGLV 521
Query: 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117
CP L+ F + + N +++ + FFEGM+ LKVL G+ SLP SL L NL+TLCLD
Sbjct: 522 CPKLEFFECFLKTNLAVKIPNTFFEGMKQLKVLDLTGMQLPSLPLSLQSLANLRTLCLDG 581
Query: 118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177
C+L DI I +LKKLEILSL S+I QLP EI QLT L+L DL + + L+VI +VIS L
Sbjct: 582 CKLGDIVIIAELKKLEILSLMDSDIEQLPREIAQLTHLRLFDLKSSFKLKVIPSDVISSL 641
Query: 178 SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRY 237
+LE+L M N F+ WE EG SNA L EL+ L+ LT L+I++PDA++LP D V L RY
Sbjct: 642 FRLEDLCMENSFTQWEG-EGKSNACLAELKHLSHLTALDIQIPDAKLLPKDMVFDNLMRY 700
Query: 238 KIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV 297
+I +G D + + +LK K + L DG LL+RTEDL L L G
Sbjct: 701 RIFVG-------DIWIWEKNYKTNRILKLNKFDTSLHLVDGISKLLKRTEDLHLRELCGG 753
Query: 298 QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETI 356
+V+ +L+ EGF +LK L V EI +IV S+ FP++E LSL L NL+ +
Sbjct: 754 TNVLSKLNR-EGFLKLKHLNVESSPEIQYIVNSMDLTSSHAAFPVMETLSLNQLINLQEV 812
Query: 357 CYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDME 416
C+ Q SF LR + V+ C LK+LFS S+A+ L RL++ KV C + ++
Sbjct: 813 CHGQFPAG-SFGCLRKVEVEDCDGLKFLFSLSVARGLSRLEETKVTRCKSMVEMV----- 866
Query: 417 KPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLW------------------- 457
+QG EI ++D V+ FP L L L L +
Sbjct: 867 ----SQGRKEI--KEDAVNVPLFPELRSLTLKDLPKLSNFCFEENPVLSKPASTIVGPST 920
Query: 458 --------SDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG 509
D + NL + + +C L LF S+ L LQ L +++C +E
Sbjct: 921 PPLNQPEIRDGQLLLSLGGNLRSLKLKNCMSLLKLFPPSL---LQNLQELTLKDCDKLEQ 977
Query: 510 VVNTTTLG-------------------------------GRDEFK-----------VFPK 527
V + L R+ F +FPK
Sbjct: 978 VFDLEELNVDDGHVELLPKLKELRLIGLPKLRHICNCGSSRNHFPSSMASAPVGNIIFPK 1037
Query: 528 LHYLSLHWLPKLSSFASP-----EDVIHTEMQPQ--SLFDEKVRLPSLEVLHISEADKLR 580
L ++L LP L+SF SP + + H ++ LFDE+V PSL+ L IS D ++
Sbjct: 1038 LSDITLESLPNLTSFVSPGYHSLQRLHHADLDTPFLVLFDERVAFPSLKFLIISGLDNVK 1097
Query: 581 KIWHHQLASKSFSKLKKLKISGCNNLLNIFP 611
KIWH+Q+ SFS L K++++ C LLNIFP
Sbjct: 1098 KIWHNQIPQNSFSNLGKVRVASCGKLLNIFP 1128
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 239/630 (37%), Positives = 339/630 (53%), Gaps = 66/630 (10%)
Query: 1 MHDVIHVVAVSIATE-ERMFNVPNVADLE-KKMEETIQKDPIAISLPHRDIQELPERLQC 58
MHDV+ VA++I ++ R+F++ +E KM+E + +SL + DI ELP L C
Sbjct: 467 MHDVVRDVAIAIVSKVHRVFSLREDELVEWPKMDEL--QTCTKMSLAYNDICELPIELVC 524
Query: 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
P L+LFL Y + +++ + FFE M+ LKVL + +SLPSSL L NL+TL L+WC
Sbjct: 525 PELELFLFYHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLTNLRTLSLNWC 584
Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
+L DI+ I +LKKLE S SNI +LP EI QLT L+L DL +C L I PNVIS LS
Sbjct: 585 KLGDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLREIPPNVISSLS 644
Query: 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYK 238
+LE L M N F+ WE VEG SNAS+ E + L LTTL+I++PDAE+L D + +L RY+
Sbjct: 645 KLENLCMENSFTLWE-VEGKSNASIAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYR 703
Query: 239 IRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQ 298
I IGD + + K+ LK K + L+ DG +LL+ +DL L L G
Sbjct: 704 IFIGDVWSWDKNCPTTKT-------LKLNKLDTSLRLADGISLLLKGAKDLHLRELSGAA 756
Query: 299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETIC 357
+V +LD EGF +LK L V E+ HI+ S+ + FP+LE+L L L NL+ +C
Sbjct: 757 NVFPKLDR-EGFLQLKCLHVERSPEMQHIMNSMDPILSPCAFPVLESLFLNQLINLQEVC 815
Query: 358 YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEK 417
+ QL SFS LRI+ V+ C LK+LFS SMA+ L RL+K+++ C ++ ++ E
Sbjct: 816 HGQLLVG-SFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKNMYKMVAQGKED 874
Query: 418 PPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSD----------------QF 461
DD V + F L L L L ++ + +F
Sbjct: 875 G------------DDAVDAILFAELRYLTLQHLPKLRNFCLEGKTMPSTTKRSPTTNVRF 922
Query: 462 QGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDE 521
GI L T S + ++ S LQ L+I+NC S+ V+ + L
Sbjct: 923 NGICSEGELDNQT--SVFNQLEGWHGQLLLSFCNLQSLKIKNCASLLKVLPPSLLQNLQN 980
Query: 522 FKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRK 581
+V +Y ++ LF+EK LPSLE+L+IS D ++K
Sbjct: 981 LEVLIVENY---------------------DIPVAVLFNEKAALPSLELLNISGLDNVKK 1019
Query: 582 IWHHQLASKSFSKLKKLKISGCNNLLNIFP 611
IWH+QL SF+KLK +K++ C LLNIFP
Sbjct: 1020 IWHNQLPQDSFTKLKDVKVASCGQLLNIFP 1049
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 253/701 (36%), Positives = 363/701 (51%), Gaps = 114/701 (16%)
Query: 1 MHDVIHVVAVSIATEE-----------RMFNVPNVADLEKKMEETIQKDPIAISLPHRDI 49
MHDV+ VA+ I++++ R+ P + +L+K I ++ DI
Sbjct: 464 MHDVVRSVALDISSKDHHVFTLQQTTGRVEKWPRIDELQK---------VIWVNQDECDI 514
Query: 50 QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLIN 109
ELPE L CP L+LF+ + N +++ + FFEGM+ L+VL F + SLPSSL L N
Sbjct: 515 HELPEGLVCPKLKLFICCLKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLAN 574
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
LQTL L C+L DI I +LKKLEILSL S+I QLP EI QLT L+LLDLS+ ++VI
Sbjct: 575 LQTLLLYGCKLGDIGIITELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKVI 634
Query: 170 APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF 229
VIS LSQLE+L M N F+ WE EG SNA L EL+ L+ LT+L+I++PDA++LP D
Sbjct: 635 PSGVISSLSQLEDLCMENSFTQWEG-EGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDV 693
Query: 230 VSVELQRYKIRIGDG--PEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287
V L RY+I +GD E+ + + +R + LK K + L DG LL+ TE
Sbjct: 694 VFENLVRYRIFVGDVWIWEENY-------KTNRTLKLK--KFDTSLHLVDGISKLLKITE 744
Query: 288 DLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALS 346
DL L L G +V+ +L DGEGF +LK L V EI +IV S+ FP++E LS
Sbjct: 745 DLHLRELCGGTNVLSKL-DGEGFFKLKHLNVESSPEIQYIVNSLDLTSPHGAFPVMETLS 803
Query: 347 LMFLTNLETICYSQL----REDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE 402
L L NL+ +C+ Q QSF LR + V+ C LK+LFS S+A+ L +L+++KV
Sbjct: 804 LNQLINLQEVCHGQFPVESSRKQSFGCLRKVEVEDCDGLKFLFSLSVARGLSQLEEIKVT 863
Query: 403 DCDDL-KMI------IGPDMEKPPTTQGFIEINAED----------------DPVHQVTF 439
C + +M+ I D + P + ED P +
Sbjct: 864 RCKSMVEMVSQERKEIREDADNVPLFPELRHLTLEDLPKLSNFCFEENPVLPKPASTIVG 923
Query: 440 P---------------------RLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSC 478
P L L+L + ++ KL+ QNL ++ V +C
Sbjct: 924 PSTPPLNQPEIRDGQLLLSFGGNLRSLKLKNCMSLLKLFPPSL-----LQNLEELIVENC 978
Query: 479 HRLKYLFSYSMVN------------------SLGQLQHLEIRNCRSIEGVVNTTTLGGRD 520
+L+++F +N L +L+H I NC S ++
Sbjct: 979 GQLEHVFDLEELNVDDGHVELLPKLKELRLIGLPKLRH--ICNCGSSRNHFPSSMASAPV 1036
Query: 521 EFKVFPKLHYLSLHWLPKLSSFASP-----EDVIHTEMQP--QSLFDEKVRLPSLEVLHI 573
+FPKL ++L LP L+SF SP + + H ++ LF+E+V PSL+ L I
Sbjct: 1037 GNIIFPKLSDITLESLPNLTSFVSPGYHSLQRLHHADLDTPFPVLFNERVAFPSLKFLII 1096
Query: 574 SEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFPPLV 614
S D ++KIWH+Q+ SFSKL+ +K++ C LLNIFP V
Sbjct: 1097 SGLDNVKKIWHNQIPQDSFSKLEVVKVASCGELLNIFPSCV 1137
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 620 | ||||||
| TAIR|locus:2005517 | 909 | RPS2 "RESISTANT TO P. SYRINGAE | 0.291 | 0.199 | 0.265 | 3.1e-13 | |
| TAIR|locus:2136447 | 985 | AT4G27190 [Arabidopsis thalian | 0.312 | 0.196 | 0.263 | 4.9e-13 | |
| TAIR|locus:2131689 | 919 | AT4G27220 [Arabidopsis thalian | 0.632 | 0.426 | 0.241 | 2.1e-11 | |
| TAIR|locus:2205824 | 1384 | AT1G27170 [Arabidopsis thalian | 0.233 | 0.104 | 0.313 | 5.6e-05 | |
| TAIR|locus:2175075 | 1068 | AT5G41750 [Arabidopsis thalian | 0.120 | 0.070 | 0.341 | 0.00019 | |
| TAIR|locus:2008510 | 967 | AT1G61190 "AT1G61190" [Arabido | 0.279 | 0.178 | 0.269 | 0.00021 | |
| MGI|MGI:1333744 | 734 | Gp1ba "glycoprotein 1b, alpha | 0.122 | 0.103 | 0.432 | 0.00047 | |
| MGI|MGI:3045213 | 991 | Tlr13 "toll-like receptor 13" | 0.230 | 0.144 | 0.288 | 0.00085 |
| TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 146 (56.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 52/196 (26%), Positives = 91/196 (46%)
Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
E + ++ L ++ + L I V S LK LF F +Q + VE+C++L P
Sbjct: 654 EELGFADLEYLENLTTLGI-TVLSLETLKTLFEFGALHK--HIQHLHVEECNELLYFNLP 710
Query: 414 DMEKPPTTQGFIEINAEDDPVHQVT--------FPRLEELELVSLTNIKKLWSDQFQGIY 465
+ + I + D + VT P LE L L SL N+ ++W +
Sbjct: 711 SLTNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQD- 769
Query: 466 CCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVF 525
C +N+ + + C++LK + S V L +L+ +E+ +CR IE +++ ++ +F
Sbjct: 770 CLRNIRCINISHCNKLK---NVSWVQKLPKLEVIELFDCREIEELISEHESPSVEDPTLF 826
Query: 526 PKLHYLSLHWLPKLSS 541
P L L LP+L+S
Sbjct: 827 PSLKTLRTRDLPELNS 842
|
|
| TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 54/205 (26%), Positives = 95/205 (46%)
Query: 1 MHDVIHVVAV---SIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQ 57
MHDV+ A+ S + ++ V + L+ ++ + +SL + ++ LP+ ++
Sbjct: 462 MHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVE 521
Query: 58 --CPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFXXXXXXXXXX-XXXXXXNLQTL 113
C + LL +GN + +V F + L++L +L +L
Sbjct: 522 EFCVKTSVLLL--QGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSL 579
Query: 114 CLDWC-ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172
L C +L + ++ L KLE+L L ++I + P + +L R + LDLS LE I
Sbjct: 580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639
Query: 173 VISKLSQLEELYMGNGFSGWEKVEG 197
V+S+LS LE L M + W V+G
Sbjct: 640 VVSRLSSLETLDMTSSHYRWS-VQG 663
|
|
| TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 100/414 (24%), Positives = 174/414 (42%)
Query: 1 MHDVIHVVAV-SIATEERMFNVPNVAD--LEKKMEETIQKDPIAISLPHRDIQELPERLQ 57
MHDV+ A+ ++++ F+ +A L + ++ +SL ++ LP +
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNV- 489
Query: 58 CPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFXXXXXXXXXXXXXXXXNLQTLCLD 116
++ +L +GN + +V + F + L++L +L++L L
Sbjct: 490 IEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLR 549
Query: 117 WCE-LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175
C+ L ++ ++ L KL+ L L S I +LP + L+ L+ + +SN + L+ I I
Sbjct: 550 NCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTIL 609
Query: 176 KLSQLEELYM-GNGFS-GWEKVEGGSNASXXXXXXXXXXXXXXXXVPDAEILPPDFVSVE 233
+LS LE L M G+ +S G + E A+ + D +F S+
Sbjct: 610 QLSSLEVLDMAGSAYSWGIKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLT 669
Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
+ K + F P+ S I V++ + G LLQ L L
Sbjct: 670 KRLTKFQF------LFSPIRSVSPPGTGEGCLAISDVNVSNASIG--WLLQHVTSLDLNY 721
Query: 294 LEGVQSVVHEL--DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351
EG+ + L F +K L + + G ++ ++FP LE LSL +
Sbjct: 722 CEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCESQL--DLFPNLEELSLDNV- 778
Query: 352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS-MAKNLLRLQKVKVEDC 404
NLE+I L+++ V CR+LK LFS +A L LQ++KV C
Sbjct: 779 NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSC 832
|
|
| TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 47/150 (31%), Positives = 65/150 (43%)
Query: 42 ISLPHRDIQELPERL-QCPNLQLF-LLYTEGNGPMQVSDHFFEGMEGLKVLQFXXXXXXX 99
I L R +L E L L+L L+ G + V M LK L
Sbjct: 720 IHLDFRRCSKLSEFLVDVSGLKLLEKLFLSGCSDLSVLPENIGAMTSLKELLLDGTAIKN 779
Query: 100 XXXXXXXXXNLQTLCLDWCELADIA-AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
NL+ L L C++ ++ IG LK LE L L + + LP IG L LQ L
Sbjct: 780 LPESINRLQNLEILSLRGCKIQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDL 839
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGNG 188
L C L I P+ I++L L++L++ NG
Sbjct: 840 HLVRCTSLSKI-PDSINELKSLKKLFI-NG 867
|
|
| TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 109 NLQTLCLDWC-ELADIAAIGQLKKLEILSLAY-SNINQLPVEIGQLTRLQLLDLSNCWWL 166
NL+++ + + L +I + + LEILSL + ++ +LP I L +L++L++ NC L
Sbjct: 627 NLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSML 686
Query: 167 EVIAPNVISKLSQLEELYM 185
+VI N+ L+ LE L M
Sbjct: 687 KVIPTNI--NLASLERLDM 703
|
|
| TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 91 (37.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 51/189 (26%), Positives = 81/189 (42%)
Query: 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQ-KDPIAI---SLPHRDIQELPERL 56
MHDV+ +A+ IA++ V + E + KD A+ SL +I+E+
Sbjct: 475 MHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCES 534
Query: 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFXXXXXXXXX-XXXXXXXNLQTLCL 115
+C +L L+ + N +S F M+ L VL +LQ L L
Sbjct: 535 KCS--ELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPEQISGLVSLQYLDL 592
Query: 116 DWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174
W + + + +LKKL L+L ++ +L I ++RL L L WL + NV
Sbjct: 593 SWTRIEQLPVGLKELKKLIFLNLCFTE--RL-CSISGISRL--LSLR---WLSLRESNVH 644
Query: 175 SKLSQLEEL 183
S L+EL
Sbjct: 645 GDASVLKEL 653
|
|
| MGI|MGI:1333744 Gp1ba "glycoprotein 1b, alpha polypeptide" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00047, P = 0.00047
Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG-QLTRLQLLDLS-NCWWL 166
+L L LD CEL + G+L KLE L L+++N+ LP +G L L LD+S N L
Sbjct: 72 HLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLP-SLGWALPALTTLDVSFNK--L 128
Query: 167 EVIAPNVISKLSQLEELYMGN 187
++P V+ LSQL+ELY+ N
Sbjct: 129 GSLSPGVLDGLSQLQELYLQN 149
|
|
| MGI|MGI:3045213 Tlr13 "toll-like receptor 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 45/156 (28%), Positives = 70/156 (44%)
Query: 19 FNVPNVADLEKK---MEETIQKDP---IAISLPHRDIQELPERLQCPNLQLFL-LYTEGN 71
F++ +V + KK + E I P ++L H +IQ LP NL + L E N
Sbjct: 79 FDIHHVLCIRKKITNLTEAISDIPRYTTHLNLTHNEIQVLPP-WSFTNLSALVDLRLEWN 137
Query: 72 GPMQVSDHFFEGMEGLKVLQFXXXXXXXXXXXXXXXXNLQTLCLDWCELADIA--AIGQL 129
++ + F G+E L +L +L+TL L ++ I A L
Sbjct: 138 SIWKIDEGAFRGLENLTLLNLVENKIQSVNNSFEGLSSLKTLLLSHNQITHIHKDAFTPL 197
Query: 130 KKLEILSLAYSNINQLP--VEIGQ-LTRLQLLDLSN 162
KL+ LSL+ +NI+ +E Q L L+ LDL+N
Sbjct: 198 IKLKYLSLSRNNISDFSGILEAVQHLPCLERLDLTN 233
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.03110007 | cc-nbs-lrr resistance protein (1315 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 620 | |||
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-04 | |
| pfam12799 | 43 | pfam12799, LRR_4, Leucine Rich repeats (2 copies) | 0.001 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 5e-07
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 85 EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNIN 143
LK L SLPS L L NL+ L L + +L+D+ + L L L L+ + I+
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS 199
Query: 144 QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
LP EI L+ L+ LDLSN +E+ + +S L L L + N
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSN 241
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 23/148 (15%)
Query: 59 PNLQLFLLYTEGNGPMQVSDHFFEG--------MEGLKVLQFPG-IGSSSLPSSLGRLIN 109
P + L T + +S++ G LKVL G + +P+SL L +
Sbjct: 135 PRGSIPNLET-----LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189
Query: 110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDL--SNCW 164
L+ L L +L +GQ+K L+ + L Y+N++ ++P EIG LT L LDL +N
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-- 247
Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSG 191
L P+ + L L+ L++ N SG
Sbjct: 248 -LTGPIPSSLGNLKNLQYLFLYQNKLSG 274
|
Length = 968 |
| >gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV 147
NL+TL L ++ D+ + L LE L L+ + I L
Sbjct: 2 NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40
|
Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 620 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.9 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.87 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.86 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.85 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.85 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.81 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.44 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.43 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.43 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.43 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.41 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.38 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.33 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.24 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.21 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.12 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.09 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.04 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.04 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.01 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.99 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.88 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.85 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.84 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.82 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.78 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.68 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.52 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.51 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.46 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.44 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.43 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.42 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.41 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.39 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.38 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.38 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.31 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.18 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.11 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.08 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.08 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.06 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.99 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.98 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.96 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.83 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.83 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.69 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.46 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.4 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.17 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.8 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.6 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.54 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.45 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.13 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.74 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.5 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.5 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.37 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.63 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.54 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.19 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.85 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.85 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.55 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 87.0 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 86.39 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 85.03 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 85.03 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 81.18 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=324.96 Aligned_cols=512 Identities=18% Similarity=0.152 Sum_probs=323.5
Q ss_pred cCCcEEEEccCCCCcCC-CCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCcE
Q 007039 36 QKDPIAISLPHRDIQEL-PERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQT 112 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~ 112 (620)
..+++.|+++++.+... +... .+++|++|++++|.. ...+|..++..+++||+|++++|.+.. +|. +.+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 35799999999987543 3333 899999999999987 668898887789999999999998764 553 46788999
Q ss_pred EEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc
Q 007039 113 LCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (620)
Q Consensus 113 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 189 (620)
|++++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence 9999988764 678889999999999998765 77888889999999999988855566765 8889999999998887
Q ss_pred cccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
+.. ..+..++++++|++|++++|... .+|..+.. ++|+.|.+..+..... ....+..+++|+.|+++++
T Consensus 224 l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 224 LSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cCC--------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCC
Confidence 752 23456788888888888887754 45555544 7888888865432211 1122556778888888773
Q ss_pred cccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 268 ~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
.-...+ +.+ ...+++|+.|++.++......... +..+++|+.|+++++.-...++ .....+++|+.|++
T Consensus 295 ~l~~~~--p~~-~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p-----~~l~~~~~L~~L~L 363 (968)
T PLN00113 295 SLSGEI--PEL-VIQLQNLEILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIP-----KNLGKHNNLTVLDL 363 (968)
T ss_pred eeccCC--Chh-HcCCCCCcEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCC-----hHHhCCCCCcEEEC
Confidence 221111 122 224567777777765543333222 3367778888887775322221 13445677777777
Q ss_pred ccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccc-cc
Q 007039 348 MFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF-IE 426 (620)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~-~~ 426 (620)
+++.--..++.. ...+++|+.|.+.++.-....| ..+..+++|+.|++.+|..-... +......+.+... +.
T Consensus 364 s~n~l~~~~p~~----~~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 364 STNNLTGEIPEG----LCSSGNLFKLILFSNSLEGEIP--KSLGACRSLRRVRLQDNSFSGEL-PSEFTKLPLVYFLDIS 436 (968)
T ss_pred CCCeeEeeCChh----HhCcCCCCEEECcCCEecccCC--HHHhCCCCCCEEECcCCEeeeEC-ChhHhcCCCCCEEECc
Confidence 765422222211 2334566666666543222222 23455666666666665432221 1112222222221 11
Q ss_pred cccC--CCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 427 INAE--DDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 427 ~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
.+.- ........+++|+.|++.+|.-...++.. ...++|+.|++++| .++... +..+..+++|++|++++|
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-----~~~~~L~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-----FGSKRLENLDLSRN-QFSGAV-PRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceeeeecCcc-----cccccceEEECcCC-ccCCcc-ChhhhhhhccCEEECcCC
Confidence 1100 01112345778888888887543333221 13577888888886 444332 345667888888888887
Q ss_pred ccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcc
Q 007039 505 RSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWH 584 (620)
Q Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~ 584 (620)
.-...+ ++.... +++|+.|+|+++.--. .+|+.+..+++|++|++++|.-...+|.
T Consensus 510 ~l~~~~--p~~~~~------l~~L~~L~Ls~N~l~~----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 510 KLSGEI--PDELSS------CKKLVSLDLSHNQLSG----------------QIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred cceeeC--ChHHcC------ccCCCEEECCCCcccc----------------cCChhHhCcccCCEEECCCCcccccCCh
Confidence 544333 333333 6778888887764221 3455667788899999998865445544
Q ss_pred ccccCCcccCccEEEeccCcCcccccchh
Q 007039 585 HQLASKSFSKLKKLKISGCNNLLNIFPPL 613 (620)
Q Consensus 585 ~~~~~~~~~sL~~L~i~~C~~l~~~~p~~ 613 (620)
. +.++++|+.|++++|+-... +|..
T Consensus 566 ~---l~~l~~L~~l~ls~N~l~~~-~p~~ 590 (968)
T PLN00113 566 N---LGNVESLVQVNISHNHLHGS-LPST 590 (968)
T ss_pred h---HhcCcccCEEeccCCcceee-CCCc
Confidence 3 34678899999988875554 6643
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=310.92 Aligned_cols=505 Identities=17% Similarity=0.113 Sum_probs=348.2
Q ss_pred cCCcEEEEccCCCCc-CCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-CChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDIQ-ELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~ 111 (620)
.++++.|++++|.+. .+|... .+++||+|++++|.. ...+|. ..+++|++|++++|.+. .+|..++++.+|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 678999999999885 566543 889999999999987 556664 46899999999999986 5788899999999
Q ss_pred EEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCC
Q 007039 112 TLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (620)
Q Consensus 112 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~ 188 (620)
+|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 246 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc
Confidence 99999999764 788999999999999999776 68899999999999999999855567776 899999999999998
Q ss_pred ccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
.+.. ..+..++++++|+.|++++|... .+|..+.. ++|+.|++..+..... ....+..+++|+.|++.+
T Consensus 247 ~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 247 NLTG--------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFS 317 (968)
T ss_pred eecc--------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCC
Confidence 7752 34467888999999999988754 45555555 8899998865432211 112256778899999987
Q ss_pred ccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhc
Q 007039 267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS 346 (620)
Q Consensus 267 ~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 346 (620)
+.-... .......+++|+.|++.++......... ++.+++|+.|+++++.-...++ .....+++|+.|+
T Consensus 318 n~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~l~~~~p-----~~~~~~~~L~~L~ 386 (968)
T PLN00113 318 NNFTGK---IPVALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNNLTGEIP-----EGLCSSGNLFKLI 386 (968)
T ss_pred CccCCc---CChhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCeeEeeCC-----hhHhCcCCCCEEE
Confidence 432111 1122234688999998877654333333 3478899999998875322221 1334567788888
Q ss_pred cccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc-cc
Q 007039 347 LMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG-FI 425 (620)
Q Consensus 347 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~-~~ 425 (620)
+.++.-...++.. .+.+++|+.|++.+|.--...| ..+.++++|+.|+++++. +...........+.++. .+
T Consensus 387 l~~n~l~~~~p~~----~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 387 LFSNSLEGEIPKS----LGACRSLRRVRLQDNSFSGELP--SEFTKLPLVYFLDISNNN-LQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CcCCEecccCCHH----HhCCCCCCEEECcCCEeeeECC--hhHhcCCCCCEEECcCCc-ccCccChhhccCCCCcEEEC
Confidence 8776532222221 4567788888888764333333 245677888888887754 33222222333444444 22
Q ss_pred ccccCCCC-ccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 426 EINAEDDP-VHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 426 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
..|.-... ......++|+.|++++|. +..... ..+..+++|+.|++++| .++... +..+..+++|++|+|++|
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAVP---RKLGSLSELMQLKLSEN-KLSGEI-PDELSSCKKLVSLDLSHN 533 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCc-cCCccC---hhhhhhhccCEEECcCC-cceeeC-ChHHcCccCCCEEECCCC
Confidence 22221111 112235789999999984 432222 12346899999999997 555442 456788999999999997
Q ss_pred ccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcc
Q 007039 505 RSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWH 584 (620)
Q Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~ 584 (620)
.-...+ +..... +++|+.|+++++.-.. .+|..+..+++|+.|++++|+-...+|.
T Consensus 534 ~l~~~~--p~~~~~------l~~L~~L~Ls~N~l~~----------------~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 534 QLSGQI--PASFSE------MPVLSQLDLSQNQLSG----------------EIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccccC--ChhHhC------cccCCEEECCCCcccc----------------cCChhHhcCcccCEEeccCCcceeeCCC
Confidence 744333 333333 7899999999885322 3566778899999999999986667765
Q ss_pred ccccCCcccCccEEEeccCcCc
Q 007039 585 HQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 585 ~~~~~~~~~sL~~L~i~~C~~l 606 (620)
.+ .+.++....+.+.+.+
T Consensus 590 ~~----~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 590 TG----AFLAINASAVAGNIDL 607 (968)
T ss_pred cc----hhcccChhhhcCCccc
Confidence 53 2344444444454433
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=279.78 Aligned_cols=397 Identities=20% Similarity=0.230 Sum_probs=242.8
Q ss_pred CchhHHHHHHHhhccCCeeEecCccchhhhhh---------ccccCCcEEEEccCCCCcCC--CC--cCCCCCccEEEcc
Q 007039 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKME---------ETIQKDPIAISLPHRDIQEL--PE--RLQCPNLQLFLLY 67 (620)
Q Consensus 1 mHdl~~dla~~~s~~~~~~~~~~~~~~~~~~~---------~~~~~~lr~L~l~~~~~~~l--~~--~~~~~~Lr~L~l~ 67 (620)
|||++||||+++++++.- +++++...|.. .....+++.+++....+..+ .. ..+|++|+.|.+.
T Consensus 490 MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred hhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEe
Confidence 999999999999987631 12222222221 11245678887776655432 11 2278899999887
Q ss_pred cCCC-----CCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCC-
Q 007039 68 TEGN-----GPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS- 140 (620)
Q Consensus 68 ~~~~-----~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~- 140 (620)
.+.. ....+|.++..-.+.||+|++.++.++.+|..+ ...+|++|+++++.+.. +..++.+++|++|+++++
T Consensus 567 ~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 567 TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred cccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 6532 023456554222356999999998888888877 56889999999988887 677888999999999887
Q ss_pred CCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecC
Q 007039 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220 (620)
Q Consensus 141 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 220 (620)
.+..+| .++.+++|++|++++|..+..+|.. +.++++|+.|++.+|......+ .. .++++|+.|+++++
T Consensus 646 ~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp--------~~-i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 646 NLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP--------TG-INLKSLYRLNLSGC 714 (1153)
T ss_pred CcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC--------Cc-CCCCCCCEEeCCCC
Confidence 577787 4788899999999998878888876 8888999999988875432211 11 25777888888766
Q ss_pred CC-CCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhh
Q 007039 221 DA-EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS 299 (620)
Q Consensus 221 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~ 299 (620)
.. ..+|. ...+++.|++.+ +.+. .
T Consensus 715 ~~L~~~p~---------------------------~~~nL~~L~L~~----n~i~------------------------~ 739 (1153)
T PLN03210 715 SRLKSFPD---------------------------ISTNISWLDLDE----TAIE------------------------E 739 (1153)
T ss_pred CCcccccc---------------------------ccCCcCeeecCC----Cccc------------------------c
Confidence 42 12221 012233333333 1111 0
Q ss_pred hcccCCcCCCccccceEEeccCCCceEeeeccc--ccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeec
Q 007039 300 VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR--RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS 377 (620)
Q Consensus 300 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 377 (620)
++....+++|++|.+.++.....+..... ......+++|+.|++++|+.+..++.. .+.+++|+.|++.+
T Consensus 740 ----lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 740 ----FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIEN 811 (1153)
T ss_pred ----ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCC
Confidence 01011233444444433321110000000 001123456777777776666665543 45677777777777
Q ss_pred CCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCcccccccc
Q 007039 378 CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLW 457 (620)
Q Consensus 378 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 457 (620)
|+.++.+|.. .++++|++|++++|..+...+. ..++|+.|++.++ +++.++
T Consensus 812 C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-------------------------~~~nL~~L~Ls~n-~i~~iP 862 (1153)
T PLN03210 812 CINLETLPTG---INLESLESLDLSGCSRLRTFPD-------------------------ISTNISDLNLSRT-GIEEVP 862 (1153)
T ss_pred CCCcCeeCCC---CCccccCEEECCCCCccccccc-------------------------cccccCEeECCCC-CCccCh
Confidence 7777776553 1567777777777776655431 1346777777665 555544
Q ss_pred ccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccccccccc
Q 007039 458 SDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGV 510 (620)
Q Consensus 458 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~ 510 (620)
.. +..+++|+.|++.+|++|+.++ .....+++|+.+++++|++|+.+
T Consensus 863 ~s----i~~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 863 WW----IEKFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HH----HhcCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCcccccc
Confidence 32 2356777777777777777763 23456677777777777777654
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-24 Score=243.93 Aligned_cols=386 Identities=18% Similarity=0.203 Sum_probs=273.5
Q ss_pred cccchHHHhcCCCCcEEEcCCCCC-------CCChhhhhccc-CCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCC
Q 007039 74 MQVSDHFFEGMEGLKVLQFPGIGS-------SSLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQ 144 (620)
Q Consensus 74 ~~~~~~~~~~l~~Lr~L~l~~~~~-------~~lp~~~~~l~-~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~ 144 (620)
..+....|.++++|++|.+..+.. ..+|..+..++ +|++|++.++.++. |..+ .+.+|++|++.++.+..
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc
Confidence 456667789999999999976542 24677777664 59999999999888 6666 67999999999999999
Q ss_pred CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC-CC
Q 007039 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AE 223 (620)
Q Consensus 145 lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~ 223 (620)
+|.++..+++|+.|+++++..++.+|. ++.+++|++|++.+|... ...+..++++++|+.|+++++. ..
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L--------~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL--------VELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc--------cccchhhhccCCCCEEeCCCCCCcC
Confidence 999999999999999999887888886 889999999999988654 2344677888899999988654 33
Q ss_pred CCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhccc
Q 007039 224 ILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHE 303 (620)
Q Consensus 224 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 303 (620)
.+|..+ .+ ++|+.|.+.+|..+..+.
T Consensus 696 ~Lp~~i-------------------------~l---------------------------~sL~~L~Lsgc~~L~~~p-- 721 (1153)
T PLN03210 696 ILPTGI-------------------------NL---------------------------KSLYRLNLSGCSRLKSFP-- 721 (1153)
T ss_pred ccCCcC-------------------------CC---------------------------CCCCEEeCCCCCCccccc--
Confidence 333221 12 334444444443332221
Q ss_pred CCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhcc-CCC--CCCcCCCCcEEEeecCCC
Q 007039 304 LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYS-QLR--EDQSFSNLRIINVDSCRK 380 (620)
Q Consensus 304 l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~--~~~~~~~L~~L~l~~c~~ 380 (620)
...++|++|++.++. +..++ ....+++|++|.+.++....-+... .+. ....+++|+.|++.+|+.
T Consensus 722 ----~~~~nL~~L~L~~n~-i~~lP------~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 722 ----DISTNISWLDLDETA-IEEFP------SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred ----cccCCcCeeecCCCc-ccccc------ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 124678899998874 44333 2235788998888776532211100 000 022357899999999998
Q ss_pred ceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccC
Q 007039 381 LKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQ 460 (620)
Q Consensus 381 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 460 (620)
+..+|. .++++++|+.|++++|.+++.++.. ..+++|+.|++++|.++..++.
T Consensus 791 l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~-----------------------~~L~sL~~L~Ls~c~~L~~~p~-- 843 (1153)
T PLN03210 791 LVELPS--SIQNLHKLEHLEIENCINLETLPTG-----------------------INLESLESLDLSGCSRLRTFPD-- 843 (1153)
T ss_pred ccccCh--hhhCCCCCCEEECCCCCCcCeeCCC-----------------------CCccccCEEECCCCCccccccc--
Confidence 888765 4789999999999999998877621 2578999999999988876543
Q ss_pred CccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCc
Q 007039 461 FQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLS 540 (620)
Q Consensus 461 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 540 (620)
..++|++|++++ ..++.+ +..+..+++|+.|++.+|++++.+. .... .+++|+.+++.+|++|+
T Consensus 844 -----~~~nL~~L~Ls~-n~i~~i--P~si~~l~~L~~L~L~~C~~L~~l~--~~~~------~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 -----ISTNISDLNLSR-TGIEEV--PWWIEKFSNLSFLDMNGCNNLQRVS--LNIS------KLKHLETVDFSDCGALT 907 (1153)
T ss_pred -----cccccCEeECCC-CCCccC--hHHHhcCCCCCEEECCCCCCcCccC--cccc------cccCCCeeecCCCcccc
Confidence 247899999998 588877 3567899999999999999998863 2233 37889999999999998
Q ss_pred ccCCCcccccCCCCccccc-cccccCCCccEEEeccccchhhh
Q 007039 541 SFASPEDVIHTEMQPQSLF-DEKVRLPSLEVLHISEADKLRKI 582 (620)
Q Consensus 541 ~~~~~~~~~~~~~~l~~l~-~~~~~l~~L~~L~i~~C~~L~~l 582 (620)
.++...... ....+. .....+++...+.+.+|.+|..-
T Consensus 908 ~~~l~~~~~----~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 908 EASWNGSPS----EVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred cccCCCCch----hhhhhcccccccCCchhccccccccCCCch
Confidence 764321000 000000 01123456667788888877653
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-24 Score=214.53 Aligned_cols=392 Identities=16% Similarity=0.163 Sum_probs=271.4
Q ss_pred cccCCcEEEEccCCCCcCCCCcC----CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccC
Q 007039 34 TIQKDPIAISLPHRDIQELPERL----QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLIN 109 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~ 109 (620)
......+-++.+++.++.+.... -.+.-++|++++|.. .++....|.++++|+.+++.+|.+..+|...+..-|
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl--~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL--SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH 126 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeecccccc--ccCcHHHHhcCCcceeeeeccchhhhcccccccccc
Confidence 45777788888888886653221 335667799998887 555555578899999999999999899987777788
Q ss_pred CcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcC
Q 007039 110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 110 L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 186 (620)
|+.|+|.+|.|++ -+.+..+..||.|||+.|.|+++|.. +..-.++++|++++|. ++.+..+.|..+.+|-+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence 9999999998887 47888889999999999988877653 5555788999999887 777776668888889999998
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
+|.++.. .+..++++++|+.|++..|.+..+.... +..+++++.|.+..
T Consensus 206 rNrittL--------p~r~Fk~L~~L~~LdLnrN~irive~lt-----------------------FqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 206 RNRITTL--------PQRSFKRLPKLESLDLNRNRIRIVEGLT-----------------------FQGLPSLQNLKLQR 254 (873)
T ss_pred cCccccc--------CHHHhhhcchhhhhhccccceeeehhhh-----------------------hcCchhhhhhhhhh
Confidence 8888733 3367778888888888877543221111 33444455555544
Q ss_pred ccccccccc-hhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 267 IKKVSILQE-NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 267 ~~~~~~i~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
.+|.. .+|+...+.++++|++....-..--..+ +-+++.|+.|+++.+. ++.+-. ......++|++|
T Consensus 255 ----N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~---lfgLt~L~~L~lS~Na-I~rih~----d~WsftqkL~~L 322 (873)
T KOG4194|consen 255 ----NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW---LFGLTSLEQLDLSYNA-IQRIHI----DSWSFTQKLKEL 322 (873)
T ss_pred ----cCcccccCcceeeecccceeecccchhhhhhccc---ccccchhhhhccchhh-hheeec----chhhhcccceeE
Confidence 33322 3444444566777776543322111122 3378889999998874 222211 144567888999
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcccc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFI 425 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~ 425 (620)
++++ ..++.++.+. ...+..|++|.+.+ +++.++.. +.+..+.+|++|++++. .+.....+
T Consensus 323 dLs~-N~i~~l~~~s---f~~L~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N-~ls~~IED------------ 383 (873)
T KOG4194|consen 323 DLSS-NRITRLDEGS---FRVLSQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSN-ELSWCIED------------ 383 (873)
T ss_pred eccc-cccccCChhH---HHHHHHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCC-eEEEEEec------------
Confidence 8887 5577666554 45678888888887 56776643 45678889999988873 33322211
Q ss_pred ccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcc
Q 007039 426 EINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503 (620)
Q Consensus 426 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 503 (620)
....+..+++|++|.+.++ ++++++...+. .+.+|+.|++.+ +.+.++ .+..+..+ .|++|.+..
T Consensus 384 ------aa~~f~gl~~LrkL~l~gN-qlk~I~krAfs---gl~~LE~LdL~~-NaiaSI-q~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 384 ------AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS---GLEALEHLDLGD-NAIASI-QPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ------chhhhccchhhhheeecCc-eeeecchhhhc---cCcccceecCCC-Ccceee-cccccccc-hhhhhhhcc
Confidence 1234556899999999987 88888877766 788999999988 677777 44556666 788776544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-23 Score=226.52 Aligned_cols=372 Identities=26% Similarity=0.369 Sum_probs=217.1
Q ss_pred CchhHHHHHHHhhc-----cCCeeEecCccchhhhhhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcc
Q 007039 1 MHDVIHVVAVSIAT-----EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ 75 (620)
Q Consensus 1 mHdl~~dla~~~s~-----~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~ 75 (620)
|||+|||||.++|+ +++++ +..+.+....+....+..+|+.++.++.+..++...+++.|++|.+.+|..-...
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred eeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence 89999999999999 67655 4433344445555567889999999999999988888899999999988621266
Q ss_pred cchHHHhcCCCCcEEEcCCCC-CCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCC
Q 007039 76 VSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTR 154 (620)
Q Consensus 76 ~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~ 154 (620)
++..+|..+++||+||+++|. +..+|+.++++.|||||+++++ .+..+|.++++|.+
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t----------------------~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT----------------------GISHLPSGLGNLKK 619 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC----------------------CccccchHHHHHHh
Confidence 777778889999999999764 4567766665555555555555 45555555555555
Q ss_pred CCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCc
Q 007039 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVEL 234 (620)
Q Consensus 155 L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L 234 (620)
|++|++..+.....+|. ....+++||+|.+...... .+...+.++.++++|+.+.+...+. .+-..+.
T Consensus 620 L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~------~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~---- 687 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS------NDKLLLKELENLEHLENLSITISSV-LLLEDLL---- 687 (889)
T ss_pred hheeccccccccccccc-hhhhcccccEEEeeccccc------cchhhHHhhhcccchhhheeecchh-HhHhhhh----
Confidence 55555555543333333 2444666666665444311 1334456666666666666643221 1000000
Q ss_pred eEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccc
Q 007039 235 QRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLK 314 (620)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~ 314 (620)
++.......+.+.+.++..... ......+.+|+
T Consensus 688 -------------------------------------------~~~~L~~~~~~l~~~~~~~~~~----~~~~~~l~~L~ 720 (889)
T KOG4658|consen 688 -------------------------------------------GMTRLRSLLQSLSIEGCSKRTL----ISSLGSLGNLE 720 (889)
T ss_pred -------------------------------------------hhHHHHHHhHhhhhccccccee----ecccccccCcc
Confidence 0000001111222211111111 11245788999
Q ss_pred eEEeccCCCceEeeecccccccc-cccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHh
Q 007039 315 RLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNL 393 (620)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 393 (620)
.|.|.+|...+............ .|+++..+.+.+|..+++..+. .-.|+|+.|.+..|+.+++..+. .+.+
T Consensus 721 ~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-----~f~~~L~~l~l~~~~~~e~~i~~--~k~~ 793 (889)
T KOG4658|consen 721 ELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-----LFAPHLTSLSLVSCRLLEDIIPK--LKAL 793 (889)
T ss_pred eEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-----hccCcccEEEEecccccccCCCH--HHHh
Confidence 99999887543221100001122 3777888888887776665443 23577888888887777765442 3444
Q ss_pred cccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE-ecCCccccccccccCCccccccCCccE
Q 007039 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL-ELVSLTNIKKLWSDQFQGIYCCQNLTK 472 (620)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~~l~~l~~~~~~~~~~l~~L~~ 472 (620)
..++++.+ .|.++..+ .+.+.+.+.++.....+ ++.|+.
T Consensus 794 ~~l~~~i~------------------------------------~f~~~~~l~~~~~l~~l~~i~~~~l~----~~~l~~ 833 (889)
T KOG4658|consen 794 LELKELIL------------------------------------PFNKLEGLRMLCSLGGLPQLYWLPLS----FLKLEE 833 (889)
T ss_pred hhcccEEe------------------------------------cccccccceeeecCCCCceeEecccC----ccchhh
Confidence 44444211 13333333 34444444444333333 445888
Q ss_pred EEEecCCCcceecchhhhcccCcccEEEEccc-cccccc
Q 007039 473 VTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC-RSIEGV 510 (620)
Q Consensus 473 L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C-~~l~~~ 510 (620)
+.+..||++..+ |.+.++.|.+| +.+...
T Consensus 834 ~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 834 LIVEECPKLGKL---------PLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred eehhcCcccccC---------ccccccceeccccceeec
Confidence 888888887765 67777788886 555544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-24 Score=213.32 Aligned_cols=370 Identities=20% Similarity=0.210 Sum_probs=216.0
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEec
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSL 137 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 137 (620)
+-.|-+++++|++.-+.+|.++ ..+..++.|.+..+++..+|+.++.|.+|+.|.+.+|++.. -..+..|+.||.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 4455566666666335566665 67777777777777777778777777777777777777666 466777777777777
Q ss_pred CCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEE
Q 007039 138 AYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215 (620)
Q Consensus 138 ~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 215 (620)
+.|.++ .+|..|.++..|..||+++|+ +.+.|.+ +..-.++-.|+++.|.+...+. .-+-++..|-.|
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~IetIPn--------~lfinLtDLLfL 155 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIETIPN--------SLFINLTDLLFL 155 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccccCCc--------hHHHhhHhHhhh
Confidence 777665 677777777777777877777 7777776 6777777777777776642111 234466666667
Q ss_pred EeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceeccccc
Q 007039 216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (620)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~ 295 (620)
+++.|..+.+|+.+- .+..|+.|.|++ .+
T Consensus 156 DLS~NrLe~LPPQ~R------------------------RL~~LqtL~Ls~---------------------------NP 184 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIR------------------------RLSMLQTLKLSN---------------------------NP 184 (1255)
T ss_pred ccccchhhhcCHHHH------------------------HHhhhhhhhcCC---------------------------Ch
Confidence 777666665554321 122222222222 11
Q ss_pred ChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEe
Q 007039 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINV 375 (620)
Q Consensus 296 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 375 (620)
....- +..+..+++|+.|.+++.... +..+|.. ...+.+|+.+++
T Consensus 185 L~hfQ---LrQLPsmtsL~vLhms~TqRT----------------------------l~N~Pts----ld~l~NL~dvDl 229 (1255)
T KOG0444|consen 185 LNHFQ---LRQLPSMTSLSVLHMSNTQRT----------------------------LDNIPTS----LDDLHNLRDVDL 229 (1255)
T ss_pred hhHHH---HhcCccchhhhhhhcccccch----------------------------hhcCCCc----hhhhhhhhhccc
Confidence 10000 000113334444444443211 0011111 233444444444
Q ss_pred ecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCcccccc
Q 007039 376 DSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKK 455 (620)
Q Consensus 376 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 455 (620)
+. +++..+|.. +..+++|+.|++++ ++++.+. .....+.+|++|.++.+ .++.
T Consensus 230 S~-N~Lp~vPec--ly~l~~LrrLNLS~-N~iteL~----------------------~~~~~W~~lEtLNlSrN-QLt~ 282 (1255)
T KOG0444|consen 230 SE-NNLPIVPEC--LYKLRNLRRLNLSG-NKITELN----------------------MTEGEWENLETLNLSRN-QLTV 282 (1255)
T ss_pred cc-cCCCcchHH--HhhhhhhheeccCc-Cceeeee----------------------ccHHHHhhhhhhccccc-hhcc
Confidence 32 444444432 44566666666655 3333333 12234556666666665 5555
Q ss_pred ccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceecccc
Q 007039 456 LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHW 535 (620)
Q Consensus 456 l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 535 (620)
++... ..++.|++|...+ ++|+.-..+++++.+..|+.+...+ +.|+-+ |++++. ++.|+.|.++
T Consensus 283 LP~av----cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElV--PEglcR------C~kL~kL~L~- 347 (1255)
T KOG0444|consen 283 LPDAV----CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV--PEGLCR------CVKLQKLKLD- 347 (1255)
T ss_pred chHHH----hhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccC--chhhhh------hHHHHHhccc-
Confidence 54332 3466666666666 5666555566677777777766665 455544 555554 5566666554
Q ss_pred CCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhc
Q 007039 536 LPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIW 583 (620)
Q Consensus 536 ~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~ 583 (620)
++.+-+||+.+..++.|+.|++.+.|+|..-|
T Consensus 348 ----------------~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 348 ----------------HNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ----------------ccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 34556678888888888888888888888743
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-25 Score=210.65 Aligned_cols=262 Identities=24% Similarity=0.231 Sum_probs=206.7
Q ss_pred CCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+..+.+++|.+..+.+.. ++..+.+|.+.+|.. ..+|+++ +.+..++.++.+.|++..+|+.++.+..|+.++.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l--~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL--SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchh--hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 34677889999997776555 889999999999987 7888887 7899999999999999999999999999999999
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
+++.+.+ +++|+.+..|..++...|.+.++|.+++++.+|..+++.++. +.+.|+..+. ++.|++++...|...
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh---
Confidence 9999888 899999999999999999999999999999999999999988 8888888555 999999998887665
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEeccccccccc
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~ 274 (620)
..+.+++.+.+|.-|++..|....+|+.-.++.|++|.+........ .......++++..|+++. ..+.
T Consensus 197 ------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRd----Nklk 265 (565)
T KOG0472|consen 197 ------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRD----NKLK 265 (565)
T ss_pred ------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeeccc----cccc
Confidence 46678999999999999999988888433337788887754431110 001244778888899988 4444
Q ss_pred chhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCC
Q 007039 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS 322 (620)
Q Consensus 275 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 322 (620)
..+.-.-.+.+|.+|++++..-. .... .++++ +|+.|.+.|++
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is-~Lp~---sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDIS-SLPY---SLGNL-HLKFLALEGNP 308 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccc-cCCc---ccccc-eeeehhhcCCc
Confidence 43222234688999999865422 2212 25577 89999998886
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-24 Score=201.07 Aligned_cols=443 Identities=19% Similarity=0.213 Sum_probs=280.9
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEec
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSL 137 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 137 (620)
.-+..++++.|.. ..+...+ .++..+.+|++..|...++|.+++.+..+..++.+++.+.. |+.++.+..|+.++.
T Consensus 45 v~l~~lils~N~l--~~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDL--EVLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCch--hhccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 4566777777766 4444443 67788888888888888888888888888888888888777 778888888888888
Q ss_pred CCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEe
Q 007039 138 AYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (620)
Q Consensus 138 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (620)
+++.+.++|.+|+.+-.|..++..+|+ +..+|.+ +..+.+|..+++.++... +.+++.-+++.|++++.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~---------~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK---------ALPENHIAMKRLKHLDC 190 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh---------hCCHHHHHHHHHHhccc
Confidence 888888888888888888888887777 7777776 677777777877777665 34455555777888887
Q ss_pred ecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 218 EVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 218 ~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
..|-.+.+|+++.. .+|+.| +++...
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~L----------------------------------------------------yL~~Nk- 217 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELL----------------------------------------------------YLRRNK- 217 (565)
T ss_pred chhhhhcCChhhcchhhhHHH----------------------------------------------------Hhhhcc-
Confidence 77777777766333 222222 222111
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEee
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD 376 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 376 (620)
+ ..++.++++..|++|++..+. ++-++.+ ....++++..|++.+ .+++++|.+. --+.+|.+|+++
T Consensus 218 i----~~lPef~gcs~L~Elh~g~N~-i~~lpae----~~~~L~~l~vLDLRd-Nklke~Pde~----clLrsL~rLDlS 283 (565)
T KOG0472|consen 218 I----RFLPEFPGCSLLKELHVGENQ-IEMLPAE----HLKHLNSLLVLDLRD-NKLKEVPDEI----CLLRSLERLDLS 283 (565)
T ss_pred c----ccCCCCCccHHHHHHHhcccH-HHhhHHH----Hhcccccceeeeccc-cccccCchHH----HHhhhhhhhccc
Confidence 1 122335578888888887663 2222111 344778888888888 6688887663 347789999998
Q ss_pred cCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCC-----ccccccccCCC-------------C---cc
Q 007039 377 SCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTT-----QGFIEINAEDD-------------P---VH 435 (620)
Q Consensus 377 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l-----~~~~~~~~~~~-------------~---~~ 435 (620)
+ +.++.+|+. ++++ .|+.|.+.+.+ +.++.-+- -..+.. .+....|++.. . ..
T Consensus 284 N-N~is~Lp~s--Lgnl-hL~~L~leGNP-lrTiRr~i-i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 284 N-NDISSLPYS--LGNL-HLKFLALEGNP-LRTIRREI-ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred C-CccccCCcc--cccc-eeeehhhcCCc-hHHHHHHH-HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 7 577777663 5677 88888888854 33332110 000000 00111111110 0 11
Q ss_pred ccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceec----------------------chhhhccc
Q 007039 436 QVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLF----------------------SYSMVNSL 493 (620)
Q Consensus 436 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----------------------~~~~~~~l 493 (620)
....-+.+.|++++- +++.++...+.... -.-...+++++ +++..++ ++..+..+
T Consensus 358 ~~~~i~tkiL~~s~~-qlt~VPdEVfea~~-~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 358 IYAIITTKILDVSDK-QLTLVPDEVFEAAK-SEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred hhhhhhhhhhccccc-ccccCCHHHHHHhh-hcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 223445777777765 56666544322110 00122333333 2222221 24556777
Q ss_pred CcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcc-------cccCCCCccccccc-cccC
Q 007039 494 GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPED-------VIHTEMQPQSLFDE-KVRL 565 (620)
Q Consensus 494 ~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~-------~~~~~~~l~~l~~~-~~~l 565 (620)
+.|..|++++ +-+.++ |.+++. +.+|+.|+|++- ...-++.|.. .++..+++.++++. ++.+
T Consensus 435 ~kLt~L~L~N-N~Ln~L--P~e~~~------lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 435 QKLTFLDLSN-NLLNDL--PEEMGS------LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred hcceeeeccc-chhhhc--chhhhh------hhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 8888888887 445555 444443 567888888765 2222222211 12456788888887 8999
Q ss_pred CCccEEEeccccchhhhccccccCCcccCccEEEeccCcC
Q 007039 566 PSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNN 605 (620)
Q Consensus 566 ~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 605 (620)
.+|.+|++.+. .|+.+|+. ++++++|++|+++|.|-
T Consensus 505 ~nL~tLDL~nN-dlq~IPp~---LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 505 RNLTTLDLQNN-DLQQIPPI---LGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhcceeccCCC-chhhCChh---hccccceeEEEecCCcc
Confidence 99999999998 79999887 57899999999999874
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-24 Score=211.78 Aligned_cols=220 Identities=18% Similarity=0.189 Sum_probs=146.0
Q ss_pred cccCCcEEEEccCCCC--cCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 34 TIQKDPIAISLPHRDI--QELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
+.++-+|.+++++|.+ ..+|... .+.+++-|.+..... ..+|..+ +.+.+|..|.+..|++..+-..+..++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3456677888888877 3566666 777777777776655 6677765 67777777777777777666667777777
Q ss_pred cEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
|.++++.|++.. |..|.+|..|.+||+++|.+.+.|..+..-+++-.|++++|+ ++.+|...+.+++.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 777777777653 677777778888888887777777777777777778887777 7777777777777777777777
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEe
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (620)
|... ..+..+..+.+|++|.+++|....+.---.. ++|+.|.+++.+-.....++.+..+.+|+.++++
T Consensus 160 NrLe---------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 160 NRLE---------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred chhh---------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 7654 3445666777777777777764433221111 4444444443332222222234555555555555
Q ss_pred c
Q 007039 266 G 266 (620)
Q Consensus 266 ~ 266 (620)
.
T Consensus 231 ~ 231 (1255)
T KOG0444|consen 231 E 231 (1255)
T ss_pred c
Confidence 4
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-22 Score=196.96 Aligned_cols=362 Identities=17% Similarity=0.180 Sum_probs=239.7
Q ss_pred cccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L 110 (620)
..+...+.|++++|.+.++... .++++|+.+.+..|.. ..+|... ...-||+.|+|..|.|.++. +.+.-++.|
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhccccc-ccccceeEEeeeccccccccHHHHHhHhhh
Confidence 4577789999999999776544 3999999999999987 8888743 56678999999999998874 678889999
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
|+|||+.|.+.+ + +.|.+=.++++|+|++|.|+.+-. .+..+.+|-.|.+++|. +..+|...|.++++|+.|++.+
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccc
Confidence 999999999988 4 677788899999999999997754 47888899999999988 8999998899999999999999
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEe
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (620)
|.+. ....-.+++++.|+.|.+..|+...+....+. .++++|++..+....... .-+..+..|+.|+++
T Consensus 231 N~ir--------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 231 NRIR--------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLS 301 (873)
T ss_pred ccee--------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-ccccccchhhhhccc
Confidence 9875 22346788999999999999998888877665 888888886554221100 004455556666665
Q ss_pred cccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 266 GIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 266 ~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
.+. +..|..+.| + -.+.|++|+++.+. ++.+.. .....+..|++|
T Consensus 302 ~Na-I~rih~d~W------------------------s-----ftqkL~~LdLs~N~-i~~l~~----~sf~~L~~Le~L 346 (873)
T KOG4194|consen 302 YNA-IQRIHIDSW------------------------S-----FTQKLKELDLSSNR-ITRLDE----GSFRVLSQLEEL 346 (873)
T ss_pred hhh-hheeecchh------------------------h-----hcccceeEeccccc-cccCCh----hHHHHHHHhhhh
Confidence 511 011111111 1 23566666666552 222211 133445556666
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCcee-ec-chhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKY-LF-SFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG 423 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 423 (620)
.+++ ..+..+..+. +..+++|++|++++. .+.- +. ....+..+++|+.|.+.+ +++++++.
T Consensus 347 nLs~-Nsi~~l~e~a---f~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k----------- 409 (873)
T KOG4194|consen 347 NLSH-NSIDHLAEGA---FVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK----------- 409 (873)
T ss_pred cccc-cchHHHHhhH---HHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecch-----------
Confidence 6655 2344433332 334556666665542 1111 00 111234466666666665 44555542
Q ss_pred ccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEE
Q 007039 424 FIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTV 475 (620)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i 475 (620)
-.+..+++|++|++.++ .+.++....+. .+ .|++|.+
T Consensus 410 ----------rAfsgl~~LE~LdL~~N-aiaSIq~nAFe---~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 410 ----------RAFSGLEALEHLDLGDN-AIASIQPNAFE---PM-ELKELVM 446 (873)
T ss_pred ----------hhhccCcccceecCCCC-cceeecccccc---cc-hhhhhhh
Confidence 12344666666666665 45555444443 23 5555543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-23 Score=217.27 Aligned_cols=461 Identities=20% Similarity=0.207 Sum_probs=242.4
Q ss_pred cEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEcc
Q 007039 39 PIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 116 (620)
+.++++..|.+-..|- .-+.-+|++|+++.|.. ..+|..+ ..+.+|+.|+++.|.+..+|.+.+++.+|++++|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 5666666666544331 11444588888888877 6666665 56788888888888888888888888888888888
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++.... |.++..+++|++|++++|.+..+|..+..++.+..+..++|..+..++. .. .+++++..+...
T Consensus 100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~---- 169 (1081)
T KOG0618|consen 100 NNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG---- 169 (1081)
T ss_pred cchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc----
Confidence 888766 7888888888888888888888888888888888888888743333332 22 555555555443
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~ 274 (620)
...+.++..++. .|++..|... ..++.. .+|+.+.......... ....++++.|....++-.+..
T Consensus 170 ----~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~- 235 (1081)
T KOG0618|consen 170 ----GSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLD- 235 (1081)
T ss_pred ----cchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeec-
Confidence 223344455444 5677666544 111111 3444443321111111 112233333433332211000
Q ss_pred chhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCch
Q 007039 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE 354 (620)
Q Consensus 275 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 354 (620)
... ...++++++++..... .+.++ .+.+++|+.+++.++.- ..++ .......+|+.|.+..+. ++
T Consensus 236 -~~p---~p~nl~~~dis~n~l~-~lp~w---i~~~~nle~l~~n~N~l-~~lp-----~ri~~~~~L~~l~~~~ne-l~ 300 (1081)
T KOG0618|consen 236 -VHP---VPLNLQYLDISHNNLS-NLPEW---IGACANLEALNANHNRL-VALP-----LRISRITSLVSLSAAYNE-LE 300 (1081)
T ss_pred -ccc---ccccceeeecchhhhh-cchHH---HHhcccceEecccchhH-HhhH-----HHHhhhhhHHHHHhhhhh-hh
Confidence 000 1134455554432221 11122 12455555555544421 1111 022233445555554432 33
Q ss_pred hhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcc-cceEEEEecCCcccccccCCCCCCCCccccccccCCCC
Q 007039 355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLR-LQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP 433 (620)
Q Consensus 355 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (620)
.++.. ...+.+|+.|++.. +++.++|.. .+.-... |..++.+. ..++..+ .
T Consensus 301 yip~~----le~~~sL~tLdL~~-N~L~~lp~~-~l~v~~~~l~~ln~s~-n~l~~lp---------------------~ 352 (1081)
T KOG0618|consen 301 YIPPF----LEGLKSLRTLDLQS-NNLPSLPDN-FLAVLNASLNTLNVSS-NKLSTLP---------------------S 352 (1081)
T ss_pred hCCCc----ccccceeeeeeehh-ccccccchH-HHhhhhHHHHHHhhhh-ccccccc---------------------c
Confidence 33332 23356666666655 345554431 1121111 33333322 2222222 1
Q ss_pred ccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccc
Q 007039 434 VHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNT 513 (620)
Q Consensus 434 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~ 513 (620)
.....++.|+.|++.++ .+. ..-++.+.++..||.|+++. +.|.++ |.+.+.++..|++|+++| ++|+.++
T Consensus 353 ~~e~~~~~Lq~LylanN-~Lt---d~c~p~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp-- 423 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANN-HLT---DSCFPVLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSG-NKLTTLP-- 423 (1081)
T ss_pred ccchhhHHHHHHHHhcC-ccc---ccchhhhccccceeeeeecc-cccccC-CHHHHhchHHhHHHhccc-chhhhhh--
Confidence 22345666777777766 232 22233445677777777777 667665 456677777777777777 6676653
Q ss_pred cccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCccc
Q 007039 514 TTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFS 593 (620)
Q Consensus 514 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~ 593 (620)
+.... +++|+.|... .+.+.++| ++..++.|+.++++ |-+|+.+...... --|
T Consensus 424 ~tva~------~~~L~tL~ah-----------------sN~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~--p~p 476 (1081)
T KOG0618|consen 424 DTVAN------LGRLHTLRAH-----------------SNQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEAL--PSP 476 (1081)
T ss_pred HHHHh------hhhhHHHhhc-----------------CCceeech-hhhhcCcceEEecc-cchhhhhhhhhhC--CCc
Confidence 22222 3333333332 24455555 56666677777766 3356654222110 115
Q ss_pred CccEEEeccCcC
Q 007039 594 KLKKLKISGCNN 605 (620)
Q Consensus 594 sL~~L~i~~C~~ 605 (620)
.||+|++.|.+.
T Consensus 477 ~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 477 NLKYLDLSGNTR 488 (1081)
T ss_pred ccceeeccCCcc
Confidence 667777666653
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-21 Score=202.94 Aligned_cols=416 Identities=21% Similarity=0.201 Sum_probs=250.8
Q ss_pred cEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
+.+|++++|.+..+|... .+++|+.|.++.|.+ ..+|.+. .++++|++++|.+|....+|.++..+++|++|++++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i--~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI--RSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhH--hhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 889999999999998766 899999999999998 7788664 899999999999999999999999999999999999
Q ss_pred CCCCC-hhhhcCCCCCCEEecCCC-CCCCC-------------------ChhccCCCCCCEEeCCCCccccccchHHHhC
Q 007039 118 CELAD-IAAIGQLKKLEILSLAYS-NINQL-------------------PVEIGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (620)
Q Consensus 118 ~~~~~-~~~i~~L~~L~~L~l~~~-~l~~l-------------------p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~ 176 (620)
|.+.. |.-+..+..+..++.++| .+..+ +.++..+++ .|++++|. +. +-. +..
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~-~~-~~d--ls~ 197 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNE-ME-VLD--LSN 197 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccch-hh-hhh--hhh
Confidence 99887 777777777777777776 33333 333333333 35555544 22 111 344
Q ss_pred CcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCC---CCCCCCCccc
Q 007039 177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGD---GPEDEFDPLL 253 (620)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~ 253 (620)
+.+|+.+....+.... ---..++|+.|....|.....-......+++++.++... .++| +
T Consensus 198 ~~~l~~l~c~rn~ls~------------l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w-----i 260 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSE------------LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW-----I 260 (1081)
T ss_pred ccchhhhhhhhcccce------------EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH-----H
Confidence 5555555544443320 001223455555555555433333233667777775443 4556 6
Q ss_pred cccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccc
Q 007039 254 VKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRR 333 (620)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 333 (620)
..+.++..+.... +.+.....-.....+|+.|.+..+. ++.+... ++++.+|++|++..+. +..+++.
T Consensus 261 ~~~~nle~l~~n~----N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~---le~~~sL~tLdL~~N~-L~~lp~~--- 328 (1081)
T KOG0618|consen 261 GACANLEALNANH----NRLVALPLRISRITSLVSLSAAYNE-LEYIPPF---LEGLKSLRTLDLQSNN-LPSLPDN--- 328 (1081)
T ss_pred HhcccceEecccc----hhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc---ccccceeeeeeehhcc-ccccchH---
Confidence 6667777776665 3332222222234556666655433 2222221 3468889999988773 3333221
Q ss_pred ccccccc-ccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccc
Q 007039 334 VRCEVFP-LLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (620)
Q Consensus 334 ~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 412 (620)
.....+ .|+.|..+. ..+...+.. +...++.|+.|++.+ +.+++- .+..+.+++.|+.|++++ +.+.+.+.
T Consensus 329 -~l~v~~~~l~~ln~s~-n~l~~lp~~---~e~~~~~Lq~Lylan-N~Ltd~-c~p~l~~~~hLKVLhLsy-NrL~~fpa 400 (1081)
T KOG0618|consen 329 -FLAVLNASLNTLNVSS-NKLSTLPSY---EENNHAALQELYLAN-NHLTDS-CFPVLVNFKHLKVLHLSY-NRLNSFPA 400 (1081)
T ss_pred -HHhhhhHHHHHHhhhh-ccccccccc---cchhhHHHHHHHHhc-Cccccc-chhhhccccceeeeeecc-cccccCCH
Confidence 111111 133333333 223332211 134566777777776 344442 223466777788777777 33433332
Q ss_pred cCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcc
Q 007039 413 PDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNS 492 (620)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 492 (620)
....+++.|++|+++++ +++.++.... .+..|++|...+ +.|... | .+..
T Consensus 401 ---------------------s~~~kle~LeeL~LSGN-kL~~Lp~tva----~~~~L~tL~ahs-N~l~~f-P--e~~~ 450 (1081)
T KOG0618|consen 401 ---------------------SKLRKLEELEELNLSGN-KLTTLPDTVA----NLGRLHTLRAHS-NQLLSF-P--ELAQ 450 (1081)
T ss_pred ---------------------HHHhchHHhHHHhcccc-hhhhhhHHHH----hhhhhHHHhhcC-Cceeec-h--hhhh
Confidence 23455677777777776 6777764433 467777776665 556555 2 4557
Q ss_pred cCcccEEEEcccccccccccccccCCccceeeccccceeccccCCC
Q 007039 493 LGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK 538 (620)
Q Consensus 493 l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 538 (620)
+++|+.++++ |+.|..+..++... -|.|++|++++-..
T Consensus 451 l~qL~~lDlS-~N~L~~~~l~~~~p-------~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLS-CNNLSEVTLPEALP-------SPNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecc-cchhhhhhhhhhCC-------CcccceeeccCCcc
Confidence 7777777776 57776654444333 15677777776654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-18 Score=142.18 Aligned_cols=151 Identities=22% Similarity=0.337 Sum_probs=113.2
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
.+.+++|.+++|.+..+|+.. .+.+|++|.++.|.+ .++|.++ +.++.||.|+++-|++..+|..||.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 566777777777777777666 777777777777776 6677765 677777777777777777777777777777777
Q ss_pred ccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+.+|.+.+ |..|..|..|+-|.++.|.++-+|.+++++++||.|.++.|. +-.+|.+ ++.++.|++|++.+|...
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 77777654 566777777777777777777777777777777777777776 6667776 777777777777777655
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-18 Score=141.19 Aligned_cols=170 Identities=26% Similarity=0.395 Sum_probs=153.2
Q ss_pred CCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhh
Q 007039 48 DIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAI 126 (620)
Q Consensus 48 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i 126 (620)
.+..++..+.+.++..|.++.|.. ..+|+.+ +.+++|++|++.+|+++++|.+++.+++|+.|++.-|.+.. |..|
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cHhhcccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 345667777899999999999998 7788886 89999999999999999999999999999999999999877 9999
Q ss_pred cCCCCCCEEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchh
Q 007039 127 GQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLV 204 (620)
Q Consensus 127 ~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 204 (620)
+.++.|++||+.+|.+. .+|..+..++.|+.|++++|. .+.+|++ ++++++||.|.+..|... ..+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll---------~lpk 167 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL---------SLPK 167 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh---------hCcH
Confidence 99999999999999887 789999999999999999988 7889998 999999999999888765 5678
Q ss_pred hhcCCCCCCEEEeecCCCCCCCCcccc
Q 007039 205 ELERLTELTTLEIEVPDAEILPPDFVS 231 (620)
Q Consensus 205 ~l~~l~~L~~L~l~~~~~~~~~~~~~~ 231 (620)
+++.+..|++|.+.+|....+|+++..
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhhhh
Confidence 899999999999999998888877543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-13 Score=143.67 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=108.1
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
...+...|.+.+..+..+|... .++++.|++++|.+ ..+|..+ ..+|++|++++|.++.+|..+. .+|++|+
T Consensus 176 l~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 176 LKNNKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred cccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhh---ccCCCEEECCCCccccCChhhh--ccccEEE
Confidence 3455677888887777776533 24688888888876 5677654 3578888888888887776554 3688888
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+++|.+.. |..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. +. .+|+.|++++|.+...
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccccC
Confidence 88888776 55443 478888888887777776554 478888888876 6666653 22 3566677766655411
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (620)
+..+ .++|+.|+++.|....+|
T Consensus 320 ---------P~~l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 320 ---------PETL--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred ---------Cccc--cccceeccccCCccccCC
Confidence 1111 145666666665544444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-13 Score=149.31 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=97.1
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCC--CCC--hhhhcCCCCCCEEecCCC-CCCCCChhccCCCCCCE
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE--LAD--IAAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQL 157 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~--~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~ 157 (620)
.....|.+.+.++.+..++... ++++|++|-+.++. +.. ...|..|+.|++||+++| .+..+|.+|+.|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 4456666666666666555543 33468888777775 343 356889999999999998 88999999999999999
Q ss_pred EeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 158 L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
|+++++. +..+|.+ +.++.+|.+|++..+.... ........+.+|++|.+....
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~--------~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLE--------SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheeccccccccc--------cccchhhhcccccEEEeeccc
Confidence 9999987 8999998 9999999999998765431 112344458888888887543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-15 Score=143.43 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=106.8
Q ss_pred ccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccC
Q 007039 438 TFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLG 517 (620)
Q Consensus 438 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~ 517 (620)
.+..|+.|+.++|..+.......+. .++++|+.|.+.+|..+++........+.+.|+.+++.+|-...+-....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s--- 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS--- 366 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh---
Confidence 3567788888888776554333222 45789999999999988887655556688899999999987665431111
Q ss_pred CccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccE
Q 007039 518 GRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKK 597 (620)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~ 597 (620)
.....|.|+.|.+++|..+++-. ...+.........|+.+.+++||.+++-....+ ..+++|+.
T Consensus 367 ---ls~~C~~lr~lslshce~itD~g-----------i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l--~~c~~Ler 430 (483)
T KOG4341|consen 367 ---LSRNCPRLRVLSLSHCELITDEG-----------IRHLSSSSCSLEGLEVLELDNCPLITDATLEHL--SICRNLER 430 (483)
T ss_pred ---hccCCchhccCChhhhhhhhhhh-----------hhhhhhccccccccceeeecCCCCchHHHHHHH--hhCcccce
Confidence 12357889999999998877742 233334445677899999999999887655554 36789999
Q ss_pred EEeccCcCccc
Q 007039 598 LKISGCNNLLN 608 (620)
Q Consensus 598 L~i~~C~~l~~ 608 (620)
+++++|..+.+
T Consensus 431 i~l~~~q~vtk 441 (483)
T KOG4341|consen 431 IELIDCQDVTK 441 (483)
T ss_pred eeeechhhhhh
Confidence 99999987754
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=139.38 Aligned_cols=172 Identities=19% Similarity=0.129 Sum_probs=88.8
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
++.+++.|++.+|.+..+|.. .++|++|++++|.+ ..+|. ..++|+.|++++|.+..+|..+ .+|+.|+
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLW 288 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccC----cccccceeeccCCchhhhhhch---hhcCEEE
Confidence 344566666666666655542 35666666666655 34442 1345666666666665555422 3455666
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+++|.+.. |. .+++|++|++++|.++.+|... .+|+.|++++|. +..+|. + ..+|+.|++++|.+...
T Consensus 289 Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 289 IFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--L--PSGLQELSVSDNQLASL 357 (788)
T ss_pred CcCCccccccc---cccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--c--ccccceEecCCCccCCC
Confidence 66666555 32 1345666666666666555422 245555566655 445553 1 13566666666655411
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG 242 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 242 (620)
..+ ..+|+.|++++|....+|.. ..+|+.|++..+
T Consensus 358 ----------P~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N 392 (788)
T PRK15387 358 ----------PTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 392 (788)
T ss_pred ----------CCC--CcccceehhhccccccCccc--ccccceEEecCC
Confidence 000 13455555555555544432 134555555443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=139.93 Aligned_cols=188 Identities=17% Similarity=0.241 Sum_probs=144.8
Q ss_pred chhhhhhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhh
Q 007039 26 DLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105 (620)
Q Consensus 26 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~ 105 (620)
+...+|. .+++.++.|++++|.+..+|... .++|++|++++|.+ ..+|..+ ...|+.|++++|.+..+|..+.
T Consensus 189 ~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 189 GLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITELPERLP 261 (754)
T ss_pred CcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCcCChhHh
Confidence 3444443 45788999999999999888654 36999999999987 6788765 3579999999999999998775
Q ss_pred cccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEE
Q 007039 106 RLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184 (620)
Q Consensus 106 ~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~ 184 (620)
.+|++|++++|.+.. |..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|.. + .++|+.|+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~ 331 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLE 331 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceecc
Confidence 589999999999887 65554 589999999999999987654 579999999988 7778764 2 36899999
Q ss_pred cCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeC
Q 007039 185 MGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG 242 (620)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 242 (620)
+.+|.+.. .+..+ .++|+.|++++|....+|..+ .+.|+.|++..+
T Consensus 332 Ls~N~Lt~---------LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N 377 (754)
T PRK15370 332 AGENALTS---------LPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRN 377 (754)
T ss_pred ccCCcccc---------CChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCC
Confidence 99987762 12222 268999999999877666542 245666655433
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=133.79 Aligned_cols=170 Identities=21% Similarity=0.173 Sum_probs=116.7
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+-..|+++.+.+..+|.... ++|+.|.+.+|.+ ..+|. ..+.|++|++++|+++.+|.. .++|++|++
T Consensus 200 ~~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L--t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 200 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred cCCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcC--CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 3445678888888888776542 4788888888877 55664 257888888888888888753 357888888
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
++|.+.. |.. ..+|+.|++++|.++.+|.. .++|+.|++++|+ +..+|.. ..+|+.|++.+|.+..
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~-- 336 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS-- 336 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc--
Confidence 8888776 432 35677888888888888753 4678888888886 6666642 2357777787776651
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIR 240 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 240 (620)
+..+ ..+|+.|++++|.+..+|.. ..+|+.|.+.
T Consensus 337 --------LP~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls 370 (788)
T PRK15387 337 --------LPTL--PSGLQELSVSDNQLASLPTL--PSELYKLWAY 370 (788)
T ss_pred --------cccc--ccccceEecCCCccCCCCCC--Ccccceehhh
Confidence 1111 14688888888877766642 2345555443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-13 Score=129.12 Aligned_cols=265 Identities=16% Similarity=0.141 Sum_probs=171.7
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCC-CCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSS 98 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~ 98 (620)
+.+.++.++|+ +++.....|.+..|.|..+|+.. .+++||+|+++.|.+ ..|-+..|.+++.+-.|-+.+ |+|+
T Consensus 53 Cr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchh
Confidence 55677888886 78999999999999999998765 899999999999998 666666689999888888777 8899
Q ss_pred CChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccc--------
Q 007039 99 SLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWL-------- 166 (620)
Q Consensus 99 ~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~-------- 166 (620)
.+|+ .|+++..|+-|.+..|.+.- ...+..|++|..|.+..|.+..++. .+..+..++++.+..+..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 9985 78899999999999998775 4788999999999999998888877 5777778887776665421
Q ss_pred ----cccchHHHhCCcCCcEEEcCCCccccccc-----------------c-CCCCcchhhhcCCCCCCEEEeecCCCCC
Q 007039 167 ----EVIAPNVISKLSQLEELYMGNGFSGWEKV-----------------E-GGSNASLVELERLTELTTLEIEVPDAEI 224 (620)
Q Consensus 167 ----~~~p~~~l~~l~~L~~L~l~~~~~~~~~~-----------------~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (620)
...|.+ ++.....+-..+....+..... . .........++++++|++|++++|.+..
T Consensus 210 a~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 111111 1111111111111000000000 0 0011223446777777777877777777
Q ss_pred CCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHH-HHhccccceeccccc
Q 007039 225 LPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTK-MLLQRTEDLWLETLE 295 (620)
Q Consensus 225 ~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~-~~l~~L~~L~l~~~~ 295 (620)
+.+..+. ..++.|.+..+...... ...+..+..|+.|+|.+ ..|+...+.. ..+..|..|.+...+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~----N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYD----NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecC----CeeEEEecccccccceeeeeehccCc
Confidence 6666554 66777766544322111 11145666777777777 4444333322 223456666665433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-13 Score=129.50 Aligned_cols=271 Identities=18% Similarity=0.158 Sum_probs=169.0
Q ss_pred ccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHH
Q 007039 312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK 391 (620)
Q Consensus 312 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 391 (620)
.|+.|.+.||..... ...-.....+|+++.|.+.+|.++++.....+ ...+++|+.|.+..|..+++........
T Consensus 139 ~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl--a~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSL--ARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHH--HHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 456666666654321 11111345666777777777776666544333 2456777777777777777664444556
Q ss_pred HhcccceEEEEecCCcccccccC-CCCCCCCcc-ccccccCCCCcc----ccccCccceEecCCccccccccccCCcccc
Q 007039 392 NLLRLQKVKVEDCDDLKMIIGPD-MEKPPTTQG-FIEINAEDDPVH----QVTFPRLEELELVSLTNIKKLWSDQFQGIY 465 (620)
Q Consensus 392 ~l~~L~~L~l~~c~~l~~~~~~~-~~~~~~l~~-~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 465 (620)
.+++|++++++.|+.+..-.+.. ..++..+.. ...+|.+.+... ....+-+.++++..|..++...... ...
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~--i~~ 291 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL--IAC 291 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH--Hhh
Confidence 67777777777777766522211 001111111 112354443221 2334567778888997776543222 225
Q ss_pred ccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCC
Q 007039 466 CCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASP 545 (620)
Q Consensus 466 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 545 (620)
++..|+.|..++|..+++....+.-++.++|+.+.+.+|..+.+.-...- ....+.|+.+++..|...++-.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l------~rn~~~Le~l~~e~~~~~~d~t-- 363 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML------GRNCPHLERLDLEECGLITDGT-- 363 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh------hcCChhhhhhcccccceehhhh--
Confidence 68999999999999988876667778899999999999998866421111 1236688899998887766531
Q ss_pred cccccCCCCccccccccccCCCccEEEeccccchhhhcccccc--CCcccCccEEEeccCcCcccc
Q 007039 546 EDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLA--SKSFSKLKKLKISGCNNLLNI 609 (620)
Q Consensus 546 ~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~--~~~~~sL~~L~i~~C~~l~~~ 609 (620)
+-.--.+++.|+.|.++.|..+++.....+. ..+...|+.+++.+||.+++.
T Consensus 364 ------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 364 ------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred ------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 1112357899999999999888875222211 134678999999999998753
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-12 Score=122.84 Aligned_cols=305 Identities=18% Similarity=0.145 Sum_probs=188.1
Q ss_pred CCcCCCCCcc--EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhc
Q 007039 53 PERLQCPNLQ--LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIG 127 (620)
Q Consensus 53 ~~~~~~~~Lr--~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~ 127 (620)
|.-..|+... .++.++... .++|..+ -+.-..+.|..|+|+.+|+ +|+.+++||.|||+.|.|+. |..|.
T Consensus 38 P~pC~Cs~~~g~~VdCr~~GL--~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVDCRGKGL--TEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred CCCcccCCCCCceEEccCCCc--ccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh
Confidence 3333455533 344555544 6666543 3456778899999999974 88999999999999999887 78999
Q ss_pred CCCCCCEEecCC-CCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhh
Q 007039 128 QLKKLEILSLAY-SNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVE 205 (620)
Q Consensus 128 ~L~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 205 (620)
+++.|..|-+.+ |+|+.+|.. +++|..||.|.+.-|+ +..++.+.+..+++|..|.++.+.+... .-..
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i--------~~~t 183 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSI--------CKGT 183 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhh--------cccc
Confidence 999998888877 699999876 7889999999998887 8888888899999999999988876511 1235
Q ss_pred hcCCCCCCEEEeecCCCCCCCCcccccCceEEEE---EeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHH
Q 007039 206 LERLTELTTLEIEVPDAEILPPDFVSVELQRYKI---RIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML 282 (620)
Q Consensus 206 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~ 282 (620)
+..+..++.+.+..+..... .+|+.+.= .......|.... ....+.... +...+.-.+.
T Consensus 184 f~~l~~i~tlhlA~np~icd------CnL~wla~~~a~~~ietsgarc~---~p~rl~~~R---------i~q~~a~kf~ 245 (498)
T KOG4237|consen 184 FQGLAAIKTLHLAQNPFICD------CNLPWLADDLAMNPIETSGARCV---SPYRLYYKR---------INQEDARKFL 245 (498)
T ss_pred ccchhccchHhhhcCccccc------cccchhhhHHhhchhhcccceec---chHHHHHHH---------hcccchhhhh
Confidence 67777788877776542211 11111100 000011111000 000000000 0000000000
Q ss_pred hccccce---ecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhcc
Q 007039 283 LQRTEDL---WLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYS 359 (620)
Q Consensus 283 l~~L~~L---~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 359 (620)
-.++.+ ...++. ...+...-. ++.+++|+.|+++++. ++.+.+. .......+++|.+.+ .+++.+...
T Consensus 246 -c~~esl~s~~~~~d~-~d~~cP~~c-f~~L~~L~~lnlsnN~-i~~i~~~----aFe~~a~l~eL~L~~-N~l~~v~~~ 316 (498)
T KOG4237|consen 246 -CSLESLPSRLSSEDF-PDSICPAKC-FKKLPNLRKLNLSNNK-ITRIEDG----AFEGAAELQELYLTR-NKLEFVSSG 316 (498)
T ss_pred -hhHHhHHHhhccccC-cCCcChHHH-HhhcccceEeccCCCc-cchhhhh----hhcchhhhhhhhcCc-chHHHHHHH
Confidence 011111 001110 001111111 5689999999999884 4444211 334566788888877 557766554
Q ss_pred CCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEe
Q 007039 360 QLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (620)
Q Consensus 360 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (620)
. +..+..|+.|++.+ +.++.+.+. .++.+.+|.+|.+-.
T Consensus 317 ~---f~~ls~L~tL~L~~-N~it~~~~~-aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 317 M---FQGLSGLKTLSLYD-NQITTVAPG-AFQTLFSLSTLNLLS 355 (498)
T ss_pred h---hhccccceeeeecC-CeeEEEecc-cccccceeeeeehcc
Confidence 3 56788999999988 578877663 467788888888754
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-11 Score=120.84 Aligned_cols=179 Identities=22% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCcEEEEccCCCCc-----CCCCcC-CCCCccEEEcccCCCCC-----cccchHHHhcCCCCcEEEcCCCCCC-CChhhh
Q 007039 37 KDPIAISLPHRDIQ-----ELPERL-QCPNLQLFLLYTEGNGP-----MQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSL 104 (620)
Q Consensus 37 ~~lr~L~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~~-----~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~ 104 (620)
..++.+.+.++.+. .+++.. ..++++.+++.++.... ..++ ..+..+++|++|++++|.+. ..+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHH
Confidence 33666666666552 122222 44556666666554410 0111 12344556666666666554 233334
Q ss_pred hcccC---CcEEEccCCCCCC--h----hhhcCC-CCCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCcccc--
Q 007039 105 GRLIN---LQTLCLDWCELAD--I----AAIGQL-KKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLE-- 167 (620)
Q Consensus 105 ~~l~~---L~~L~L~~~~~~~--~----~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~-- 167 (620)
..+.+ |++|++++|.+.+ . ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 33333 6666666665542 1 234444 56666666666554 233344455556666666554221
Q ss_pred --ccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 168 --VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 168 --~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
.++.. +...++|++|++++|.+.... .......+.++++|++|++++|.
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLTDEG----ASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccChHH----HHHHHHHhcccCCCCEEecCCCc
Confidence 11111 333445666666555443110 01122233445555555555544
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-11 Score=118.90 Aligned_cols=160 Identities=21% Similarity=0.153 Sum_probs=96.3
Q ss_pred CCCCccEEEcccCCCCCc---ccchHHHhcCCCCcEEEcCCCCCCC-------ChhhhhcccCCcEEEccCCCCCC--hh
Q 007039 57 QCPNLQLFLLYTEGNGPM---QVSDHFFEGMEGLKVLQFPGIGSSS-------LPSSLGRLINLQTLCLDWCELAD--IA 124 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~~-------lp~~~~~l~~L~~L~L~~~~~~~--~~ 124 (620)
.+.+|+.+++.++..... .++. .+...+.++.++++++.+.. ++..+.++++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 556688888887765111 1222 23456678888887776552 34556667788888888877653 34
Q ss_pred hhcCCCC---CCEEecCCCCCC-----CCChhccCC-CCCCEEeCCCCcccc----ccchHHHhCCcCCcEEEcCCCccc
Q 007039 125 AIGQLKK---LEILSLAYSNIN-----QLPVEIGQL-TRLQLLDLSNCWWLE----VIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 125 ~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
.+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.... .++. .+..+++|++|++.+|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCc
Confidence 4444444 888888887665 233345566 778888888776321 1222 2556677888888777665
Q ss_pred cccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 192 WEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
... .......+...++|+.|+++++..
T Consensus 179 ~~~----~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 179 DAG----IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred hHH----HHHHHHHHHhCCCCCEEeccCCcc
Confidence 211 011223455556777777776654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-10 Score=100.82 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=26.6
Q ss_pred CcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhh-hcccCCcEEEc
Q 007039 38 DPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCL 115 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~-~~l~~L~~L~L 115 (620)
++|.|+++++.+..+.... .+.+|++|++++|.+ ..+.. +..+++|++|++++|.+..+++.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3455666666665554443 455566666666555 33332 345555666666666555554333 24555555555
Q ss_pred cCCCCCC---hhhhcCCCCCCEEecCCCCCC
Q 007039 116 DWCELAD---IAAIGQLKKLEILSLAYSNIN 143 (620)
Q Consensus 116 ~~~~~~~---~~~i~~L~~L~~L~l~~~~l~ 143 (620)
++|.+.+ ...+..+++|++|++.+|.+.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555543 244445555555555555444
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-10 Score=100.72 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=29.6
Q ss_pred cCCCCcEEEcCCCCCCCChhhhh-cccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhcc-CCCCCCEEeC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLG-RLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG-QLTRLQLLDL 160 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l 160 (620)
+...+|+|++.++.|..+.. ++ .+.+|++|++++|.+...+.+..+++|++|++++|.|++++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 44456666666666655532 33 455666666666666665556666666666666666666654442 4666666666
Q ss_pred CCCccccccch-HHHhCCcCCcEEEcCCCccc
Q 007039 161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 161 ~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|+ +..+.. ..+..+++|+.|++.+|.++
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 6654 333211 11455666666666666554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-11 Score=109.37 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=115.3
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 161 (620)
.-++.|..+|+++|.|+.+.+++.-.+.+|.|+++.|.+....++..|++|+.||+++|.+.++-.+=.++.+.++|.+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34577899999999999998888888999999999999888777899999999999999888887777788899999999
Q ss_pred CCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 162 ~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
+|. ++.+.. ++++-+|..|++.+|.+. ....+..+++++.|+.+.+.+|....++..
T Consensus 361 ~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 361 QNK-IETLSG--LRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhh-Hhhhhh--hHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 987 777765 788999999999998876 334567788999999999998887665554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-11 Score=119.37 Aligned_cols=180 Identities=23% Similarity=0.330 Sum_probs=155.7
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
+......+++.|.+..+|... .|-.|..+.++.|.+ ..+|..+ .++..|.+++++.|++..+|..+..|+ |++|.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 444566788888998888766 788899999998887 7788776 789999999999999999998887665 99999
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+++|.+.. |..++.+.+|..||.+.|.+..+|..++.+.+|+.|.+..|. +..+|.+ +.. -.|.+|+++.|.+.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~-LpLi~lDfScNkis-- 224 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCS-LPLIRLDFSCNKIS-- 224 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhC-CceeeeecccCcee--
Confidence 99999988 899999999999999999999999999999999999999988 8889988 664 45899999999876
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS 231 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 231 (620)
..+..+.+|+.|++|-+.+|....-|..++.
T Consensus 225 -------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 -------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred -------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 4567889999999999999988777766554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-10 Score=115.47 Aligned_cols=187 Identities=21% Similarity=0.273 Sum_probs=154.1
Q ss_pred EEEccCCCCcCCCCcC---CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 41 AISLPHRDIQELPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
++.+++.....+|... .+.--...+++.|.+ ..+|..+ ..|..|..+.+..|.+..+|..+.++..|.+++++.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccccc--ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 3555666665555433 444455678888887 7788775 678889999999999999999999999999999999
Q ss_pred CCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccccc
Q 007039 118 CELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE 196 (620)
Q Consensus 118 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (620)
|++.. |..+..| -|+.|-++.|+++.+|..|+.+.+|.+|+.+.|. +..+|.. ++.+.+|+.|.+.+|...
T Consensus 131 NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~----- 202 (722)
T KOG0532|consen 131 NQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE----- 202 (722)
T ss_pred chhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-----
Confidence 99887 7666654 4899999999999999999999999999999998 8889888 999999999999998876
Q ss_pred CCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCC
Q 007039 197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGD 243 (620)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~ 243 (620)
..++++..|+ |..|++++|+...+|..+.. +.|+.|.+.++.
T Consensus 203 ----~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ----DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ----hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 4556777554 88999999999999988777 888888876554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-09 Score=109.37 Aligned_cols=185 Identities=26% Similarity=0.322 Sum_probs=129.7
Q ss_pred EEccCCCC-cCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCC-CCcEEEcCCCCCCCChhhhhcccCCcEEEccCCC
Q 007039 42 ISLPHRDI-QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME-GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119 (620)
Q Consensus 42 L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 119 (620)
+....+.+ .........+.+..|++.++.+ .+++... ..++ +|++|++++|.+..+|..++.+++|+.|+++.|.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i--~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNI--TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCccc--ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 44555554 3334444667788888888877 6666543 3453 7888888888888887778888888888888888
Q ss_pred CCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCC
Q 007039 120 LAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG 198 (620)
Q Consensus 120 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 198 (620)
+.+ +...+.+.+|+.|+++++.+..+|..+.....|+++.++++. ....+.. +.++.++..+.+.++.+.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------- 245 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------- 245 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-------
Confidence 887 555557888888888888888888777777778888888875 2333333 677777777776666554
Q ss_pred CCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEe
Q 007039 199 SNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRI 241 (620)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~ 241 (620)
..+..++++..++.|+++.+....++. +.. ..++.+.+..
T Consensus 246 --~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 246 --DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred --eccchhccccccceecccccccccccc-ccccCccCEEeccC
Confidence 124566777778888888887777766 344 7777777644
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.8e-10 Score=107.24 Aligned_cols=174 Identities=16% Similarity=0.082 Sum_probs=82.3
Q ss_pred hcCCCCcEEEcCCCCCCC---ChhhhhcccCCcEEEccCCCCCCh---hhhcCCCCCCEEecCCCCCC--CCChhccCCC
Q 007039 82 EGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNIN--QLPVEIGQLT 153 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~---lp~~~~~l~~L~~L~L~~~~~~~~---~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~ 153 (620)
..|+++|.||++.|-+.. +-.....+++|+.|+++.|.+..+ ..-..+.+|+.|.+++|+++ ++.......+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 445555555555554332 223334455555555555554331 12224555555555555554 2222233455
Q ss_pred CCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCccc---
Q 007039 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFV--- 230 (620)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--- 230 (620)
+|..|++..|..+..-... ...+..|+.|++++|.+. +.+.....+.+++|+.|+++.++..++...-+
T Consensus 223 sl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li-------~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI-------DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred cHHHhhhhcccccceecch-hhhhhHHhhccccCCccc-------ccccccccccccchhhhhccccCcchhcCCCccch
Confidence 5555555555311111111 234455666666665554 22233445556666666666665443332211
Q ss_pred ---c--cCceEEEEEeCCCCCCCCCccccccccccEEE
Q 007039 231 ---S--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMM 263 (620)
Q Consensus 231 ---~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 263 (620)
. ++|+.|++..+...+|.....+..+++++.+.
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred hhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 1 56666666666655554433333444444444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.5e-10 Score=102.39 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=75.8
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
|+-++.+++++|.+..+.+.. =.|.+|.|++++|.+ ..+.. +..+.+|..||+++|.+..+-..-.++-|.++|+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 444666666666666665555 346666666666665 33322 3556666666666666554433333445566666
Q ss_pred ccCCCCCChhhhcCCCCCCEEecCCCCCCCCC--hhccCCCCCCEEeCCCCccccccc
Q 007039 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 115 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p 170 (620)
|.+|.+.+...+++|++|.+||+++|+|+.+. .+|++++.|+++.+.+|. +..++
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 66666666666666666666666666665442 346666666666666655 34333
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-09 Score=107.24 Aligned_cols=187 Identities=24% Similarity=0.277 Sum_probs=147.5
Q ss_pred EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhccc-CCcEEEccCCCCCC-hhhhcCCCCCCEEecCCC
Q 007039 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS 140 (620)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~ 140 (620)
.+...++.. ..-... ...++.+..|++.++.+..+|...+... +|+.|+++++.+.. +..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~--~~~~~~-~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRL--RSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccc--ccCchh-hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 467766654 222223 2566889999999999999998888875 99999999999988 578999999999999999
Q ss_pred CCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecC
Q 007039 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220 (620)
Q Consensus 141 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 220 (620)
.+.++|...+.+++|+.|++++++ +..+|.. +.....|+++.+.++... ..+..+.++.++..+.+..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~---------~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSII---------ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCcce---------ecchhhhhcccccccccCCc
Confidence 999999888899999999999988 8889885 467777999999888532 34566778888888888877
Q ss_pred CCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 221 DAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 221 ~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
....++..+.. ..++.+.+.......+.. +....+++.+++.+
T Consensus 243 ~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 243 KLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred eeeeccchhccccccceecccccccccccc---ccccCccCEEeccC
Confidence 76665555555 678889887766555533 66778889998887
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.2e-09 Score=101.14 Aligned_cols=204 Identities=20% Similarity=0.112 Sum_probs=144.2
Q ss_pred ccCCcEEEEccCCCCcCCCC--cC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh--hhhcccC
Q 007039 35 IQKDPIAISLPHRDIQELPE--RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS--SLGRLIN 109 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~~~~l~~ 109 (620)
-.+++|.+++.++.+...+. .. .|+++|.|+++.|-+..-..-..+...+++|+.|+++.|.+....+ .-.-+.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 37889999999999877663 33 8999999999998762222335667899999999999999865432 2236789
Q ss_pred CcEEEccCCCCCC--h-hhhcCCCCCCEEecCCC-CCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEc
Q 007039 110 LQTLCLDWCELAD--I-AAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (620)
Q Consensus 110 L~~L~L~~~~~~~--~-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 185 (620)
|+.|.+++|.++. . .-...+++|..|++.+| .+..-.....-+..|+.|++++|..+..-.....+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999999874 3 45567899999999999 444333334557889999999998444322222788999999998
Q ss_pred CCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc--ccc-cCceEEEEE
Q 007039 186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD--FVS-VELQRYKIR 240 (620)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~-~~L~~L~l~ 240 (620)
+.+.+..... -+..........++|+.|++..|....++.- +.. ++|+.|++.
T Consensus 279 s~tgi~si~~--~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 279 SSTGIASIAE--PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cccCcchhcC--CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 8887651110 0112223345678899999999887655433 222 666666653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-09 Score=97.57 Aligned_cols=188 Identities=17% Similarity=0.175 Sum_probs=106.3
Q ss_pred CCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecC
Q 007039 369 NLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELV 448 (620)
Q Consensus 369 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 448 (620)
.|+.|++++ ..++.-...+++.+|.+|+.|.+.+.. +.+-.+ .....=.+|+.|+|+
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~---------------------~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIV---------------------NTIAKNSNLVRLNLS 242 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccc-cCcHHH---------------------HHHhccccceeeccc
Confidence 366666665 334333334456677777777776632 222221 112223567777777
Q ss_pred CccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeecccc
Q 007039 449 SLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKL 528 (620)
Q Consensus 449 ~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L 528 (620)
.|.+++...... -+.+|+.|..|+|++|.-.+........+--+.|+.|.|+||.+--.....+.+ -...|.|
T Consensus 243 m~sG~t~n~~~l--l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-----~~rcp~l 315 (419)
T KOG2120|consen 243 MCSGFTENALQL--LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-----VRRCPNL 315 (419)
T ss_pred cccccchhHHHH--HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-----HHhCCce
Confidence 777665432111 124677777788888766555533333333367777777777654221111111 1136777
Q ss_pred ceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccC
Q 007039 529 HYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGC 603 (620)
Q Consensus 529 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C 603 (620)
.+||+++|-.|+. .+.-.+..++.|++|+++.|-.+- |..-+.++.-|+|.+|+|.||
T Consensus 316 ~~LDLSD~v~l~~---------------~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 316 VHLDLSDSVMLKN---------------DCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccccccccCc---------------hHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 7777777777665 122245567788888888886554 333333556688888888877
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=93.40 Aligned_cols=143 Identities=16% Similarity=0.248 Sum_probs=86.9
Q ss_pred ccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccC
Q 007039 438 TFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLG 517 (620)
Q Consensus 438 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~ 517 (620)
.+..++.|++++| ++++++. ++ ++|++|.|.+|++|+.++ +.+ .++|+.|+|.+|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--LP-----~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sL------- 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--LP-----NELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGL------- 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--CC-----CCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccc-------
Confidence 3578889999998 7887762 22 579999999999998773 222 468999999999877654
Q ss_pred Cccceeeccccceecccc--CCCCcccCCCccccc--CC--CCccccccccccCCCccEEEeccccchhhhccccccCCc
Q 007039 518 GRDEFKVFPKLHYLSLHW--LPKLSSFASPEDVIH--TE--MQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKS 591 (620)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~--~~~L~~~~~~~~~~~--~~--~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~ 591 (620)
.++|+.|++.. |..+..++..-..+. .. .....+| ...+++|++|+|++|..+. +| ..+|
T Consensus 111 -------P~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~-LP-~~LP--- 176 (426)
T PRK15386 111 -------PESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNII-LP-EKLP--- 176 (426)
T ss_pred -------ccccceEEeCCCCCcccccCcchHhheeccccccccccccc--cccCCcccEEEecCCCccc-Cc-cccc---
Confidence 23566666542 223333332111110 00 0001111 1234789999999998664 33 3355
Q ss_pred ccCccEEEeccCc--C--c-ccccchhh
Q 007039 592 FSKLKKLKISGCN--N--L-LNIFPPLV 614 (620)
Q Consensus 592 ~~sL~~L~i~~C~--~--l-~~~~p~~~ 614 (620)
.+|+.|++..+. . + ...+|+++
T Consensus 177 -~SLk~L~ls~n~~~sLeI~~~sLP~nl 203 (426)
T PRK15386 177 -ESLQSITLHIEQKTTWNISFEGFPDGL 203 (426)
T ss_pred -ccCcEEEecccccccccCccccccccc
Confidence 799999997753 1 1 12377666
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.8e-09 Score=105.97 Aligned_cols=178 Identities=21% Similarity=0.234 Sum_probs=129.4
Q ss_pred cccCCcEEEEccCCCCcC-C-CC-cCCCCCccEEEcccCCCCCcc-------------------cchHHHh---------
Q 007039 34 TIQKDPIAISLPHRDIQE-L-PE-RLQCPNLQLFLLYTEGNGPMQ-------------------VSDHFFE--------- 82 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~-l-~~-~~~~~~Lr~L~l~~~~~~~~~-------------------~~~~~~~--------- 82 (620)
++.++...+.+-...-.+ . |. ++.++.||+|.+.+++..... -...+|.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 345666666655443211 1 22 237888888888887641100 0001111
Q ss_pred -cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeC
Q 007039 83 -GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDL 160 (620)
Q Consensus 83 -~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 160 (620)
.+..|.+.++++|.+..+-.++.-+++|+.|+|++|++.+...+..+.+|++|||++|.+..+|.- ...+. |+.|.+
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 134578888888888888888888999999999999999877999999999999999999988853 33344 999999
Q ss_pred CCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 161 ~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
++|. ++.+-. +.++.+|+.|+++.|-+. ....+..++.+..|+.|.+.+|..
T Consensus 240 rnN~-l~tL~g--ie~LksL~~LDlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNA-LTTLRG--IENLKSLYGLDLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccH-HHhhhh--HHhhhhhhccchhHhhhh-------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 9987 777765 889999999999988776 334566777788899999998864
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.8e-07 Score=96.76 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=90.6
Q ss_pred CCcEEEcCCCCCC-CChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCC
Q 007039 86 GLKVLQFPGIGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 86 ~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 161 (620)
.++.|+|+++.+. .+|..++++++|++|+|++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999986 588999999999999999999875 678999999999999999888 789999999999999999
Q ss_pred CCccccccchHHHhC-CcCCcEEEcCCCccc
Q 007039 162 NCWWLEVIAPNVISK-LSQLEELYMGNGFSG 191 (620)
Q Consensus 162 ~~~~~~~~p~~~l~~-l~~L~~L~l~~~~~~ 191 (620)
+|...+.+|.. +.. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 99877788887 554 457778888877543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.7e-07 Score=96.81 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=88.0
Q ss_pred CCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEc
Q 007039 109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (620)
Q Consensus 109 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 185 (620)
.++.|+|+++.+.. |..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999875 789999999999999999887 89999999999999999999866677776 999999999999
Q ss_pred CCCccccccccCCCCcchhhhcC-CCCCCEEEeecCCC
Q 007039 186 GNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDA 222 (620)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~ 222 (620)
++|.+.+.. +..++. ..++..+++.+|..
T Consensus 498 s~N~l~g~i--------P~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRV--------PAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccC--------ChHHhhccccCceEEecCCcc
Confidence 999887433 344544 24567888887753
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=87.79 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=100.7
Q ss_pred cCCCCcEEEeecCCCceeecchhHHHHhc-ccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccce
Q 007039 366 SFSNLRIINVDSCRKLKYLFSFSMAKNLL-RLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEE 444 (620)
Q Consensus 366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 444 (620)
.+..++.|.+.+| .++.+| .+| +|++|.+.+|.+++.++. .-.++|+.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~------------------------~LP~nLe~ 98 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG------------------------SIPEGLEK 98 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc------------------------hhhhhhhh
Confidence 4578888999888 666653 455 588999988888866651 11357889
Q ss_pred EecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceee
Q 007039 445 LELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKV 524 (620)
Q Consensus 445 L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~ 524 (620)
|++.+|.++..+ -++|+.|++.+ ..+..+ -.-.++|++|.+.++........+. ..
T Consensus 99 L~Ls~Cs~L~sL----------P~sLe~L~L~~-n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~--------~L 154 (426)
T PRK15386 99 LTVCHCPEISGL----------PESVRSLEIKG-SATDSI-----KNVPNGLTSLSINSYNPENQARIDN--------LI 154 (426)
T ss_pred eEccCccccccc----------ccccceEEeCC-CCCccc-----ccCcchHhheecccccccccccccc--------cc
Confidence 999988777644 24577777753 443333 1123577888886543221111111 11
Q ss_pred ccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEecccc-chhhhccccccCCcccCccEEEeccC
Q 007039 525 FPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEAD-KLRKIWHHQLASKSFSKLKKLKISGC 603 (620)
Q Consensus 525 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~-~L~~l~~~~~~~~~~~sL~~L~i~~C 603 (620)
.++|+.|.+.+|..+.- |.. .+.+|+.|.++.+. .-..++...+| +++ .|.+.+|
T Consensus 155 PsSLk~L~Is~c~~i~L-----------------P~~--LP~SLk~L~ls~n~~~sLeI~~~sLP----~nl-~L~f~n~ 210 (426)
T PRK15386 155 SPSLKTLSLTGCSNIIL-----------------PEK--LPESLQSITLHIEQKTTWNISFEGFP----DGL-DIDLQNS 210 (426)
T ss_pred CCcccEEEecCCCcccC-----------------ccc--ccccCcEEEecccccccccCcccccc----ccc-Eechhhh
Confidence 24899999999875531 111 23699999998753 11123444444 667 8999999
Q ss_pred cCcc
Q 007039 604 NNLL 607 (620)
Q Consensus 604 ~~l~ 607 (620)
-++.
T Consensus 211 lkL~ 214 (426)
T PRK15386 211 VLLS 214 (426)
T ss_pred cccC
Confidence 6653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-09 Score=94.88 Aligned_cols=66 Identities=23% Similarity=0.151 Sum_probs=40.2
Q ss_pred CccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCc
Q 007039 309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKL 381 (620)
Q Consensus 309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 381 (620)
.+|+|..|+++++-.++. ..+.....|+.|+.|.++.|..+-- +.+-+....|+|.+|++.+|-.=
T Consensus 311 rcp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hCCceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEeccccCc
Confidence 567777777777654432 2223555677777777777765422 11112567888888888887543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-08 Score=105.23 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=80.4
Q ss_pred hccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCC
Q 007039 283 LQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLR 362 (620)
Q Consensus 283 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 362 (620)
.++++.|.+.++..+.+.. ........++|+.|+++++.................+++|+.++++.|..+++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5777778777776655421 001133678888888887421111111111224455688888888888776665544332
Q ss_pred CCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccc
Q 007039 363 EDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (620)
Q Consensus 363 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 409 (620)
..+++|+.|.+.+|..+++.........+++|++|++++|..+..
T Consensus 266 --~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 266 --SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred --hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 337889999988888877766666677888899999998888743
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-07 Score=67.32 Aligned_cols=54 Identities=30% Similarity=0.380 Sum_probs=20.3
Q ss_pred CcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCC
Q 007039 87 LKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYS 140 (620)
Q Consensus 87 Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~ 140 (620)
|++|++++|++..+| ..|.++++|++|++++|.+.. +..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333444444333333 233333333333333333333 133334444444444333
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-07 Score=67.63 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=51.5
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCC
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCEL 120 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~ 120 (620)
|+|++|++.+|.+ ..+|...|..+++|++|++++|.+..++ ..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788999999877 7888888889999999999999998876 5788999999999998864
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.3e-07 Score=98.33 Aligned_cols=103 Identities=20% Similarity=0.363 Sum_probs=50.3
Q ss_pred cCCcEEEEccCCCC--cCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDI--QELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~--~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~ 111 (620)
..++++|++.+... ...+... .+|+|++|.+.|-....++ ...++.++++|+.||++++.++.+ ..+++++||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 34455555555433 1221111 4555555555554331111 223345555555555555555555 3455555555
Q ss_pred EEEccCCCCCC---hhhhcCCCCCCEEecCCC
Q 007039 112 TLCLDWCELAD---IAAIGQLKKLEILSLAYS 140 (620)
Q Consensus 112 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~ 140 (620)
+|.+++-.+.. ...+..|++|++||+|..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 55555555442 345555555555555555
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-07 Score=97.01 Aligned_cols=107 Identities=27% Similarity=0.371 Sum_probs=60.6
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 161 (620)
..++.|.+|++.+|.+..+...+..+.+|++|++++|.|.+...+..+..|+.|++++|.+..+. .+..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 45566666666666665555445556666666666666665555555566666666666665553 34446666666666
Q ss_pred CCccccccch-HHHhCCcCCcEEEcCCCccc
Q 007039 162 NCWWLEVIAP-NVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 162 ~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~ 191 (620)
+|. +..+.. . ...+.+++.+++.++.+.
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 655 344433 1 245555555555555443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-06 Score=93.30 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=87.3
Q ss_pred CCCCcEEEcCCCCC--CCChhhhh-cccCCcEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCE
Q 007039 84 MEGLKVLQFPGIGS--SSLPSSLG-RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157 (620)
Q Consensus 84 l~~Lr~L~l~~~~~--~~lp~~~~-~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 157 (620)
-.+|++|+++|... ..-|..++ -++.|+.|.+.+-.+.. ..-..++++|+.||+++++++.+ .+|++|++||.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 36788888887542 23344454 46888888888877543 25566788888888888888887 68888888888
Q ss_pred EeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 158 L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
|.+.+-.....-.-..+.+|++|+.|+++......... -....++--..+++||.|+.+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~--ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK--IIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH--HHHHHHHhcccCccccEEecCCcc
Confidence 88777542221222226788888888887765442210 011122233457888888888665
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-06 Score=81.74 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=60.8
Q ss_pred CCCCccEEEcccCCCCCcccc--hHHHhcCCCCcEEEcCCCCCCCC--------------hhhhhcccCCcEEEccCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVS--DHFFEGMEGLKVLQFPGIGSSSL--------------PSSLGRLINLQTLCLDWCEL 120 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~~~~l--------------p~~~~~l~~L~~L~L~~~~~ 120 (620)
++++|++|+|++|.+.+..++ ..+++++..|+.|.+.+|.+... .+..+.=++||++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 455556666665555222221 22334455555555555554311 11112234455555555554
Q ss_pred CC-h-----hhhcCCCCCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCccccccch---HHHhCCcCCcEEEcC
Q 007039 121 AD-I-----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAP---NVISKLSQLEELYMG 186 (620)
Q Consensus 121 ~~-~-----~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~---~~l~~l~~L~~L~l~ 186 (620)
.+ + ..++..+.|+.+.+++|.|. -+-..+..+++|+.||+.+|.....-.. ..+...++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 43 1 33444455555555555443 1122344555555555555542221111 113344455555555
Q ss_pred CCccc
Q 007039 187 NGFSG 191 (620)
Q Consensus 187 ~~~~~ 191 (620)
.|.+.
T Consensus 250 dcll~ 254 (382)
T KOG1909|consen 250 DCLLE 254 (382)
T ss_pred ccccc
Confidence 55443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-07 Score=95.86 Aligned_cols=250 Identities=24% Similarity=0.236 Sum_probs=112.7
Q ss_pred ccccceEEeccCCCceEeeecccccccccccccchhccccc-cCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchh
Q 007039 310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL-TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS 388 (620)
Q Consensus 310 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 388 (620)
+++|+.|.+.+|..+... .........+.|+.|++.+| ......+.........+++|+.|.+.+|..+++.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD---SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChh---hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 567777777776654421 11124455666666666652 22222111000012334666666666665554443222
Q ss_pred HHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccC
Q 007039 389 MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQ 468 (620)
Q Consensus 389 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~ 468 (620)
....+++|++|.+.+|..+++.... .....++.|++|++++|..+..-.-.. ....++
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~--------------------~i~~~~~~L~~L~l~~c~~~~d~~l~~--~~~~c~ 321 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLV--------------------SIAERCPSLRELDLSGCHGLTDSGLEA--LLKNCP 321 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHH--------------------HHHHhcCcccEEeeecCccchHHHHHH--HHHhCc
Confidence 2333566666665555553322210 112345556666666665542210000 012244
Q ss_pred CccEEEEecC---CCcceecchhhhccc-CcccEEEEcccccccccccccccCCccceeeccccc-eeccccCCCCcccC
Q 007039 469 NLTKVTVWSC---HRLKYLFSYSMVNSL-GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLH-YLSLHWLPKLSSFA 543 (620)
Q Consensus 469 ~L~~L~i~~C---~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~~~ 543 (620)
+|++|.+..+ +.+++.......... ..++.+.+..|++++........ . .... .+.+.+|+.|+
T Consensus 322 ~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~-------~~~~~~~~l~gc~~l~--- 390 (482)
T KOG1947|consen 322 NLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I-------SDLGLELSLRGCPNLT--- 390 (482)
T ss_pred chhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c-------cCcchHHHhcCCcccc---
Confidence 4444333322 233333111111111 13444444444444432111100 0 0011 23334444441
Q ss_pred CCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCccc
Q 007039 544 SPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLN 608 (620)
Q Consensus 544 ~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l~~ 608 (620)
.++........+++.|+++.|...+.-...... ..+..++.+.+.+|+.+..
T Consensus 391 ------------~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~-~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 391 ------------ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA-DSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ------------hHHHHHhccCCccceEecccCccccccchHHHh-hhhhccccCCccCcccccc
Confidence 223333334445899999999877765444321 1157788899999988865
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.4e-06 Score=54.88 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=17.7
Q ss_pred CCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC
Q 007039 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD 122 (620)
Q Consensus 86 ~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 122 (620)
+|++|++++|+++.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555555555445555555555555554443
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-06 Score=80.92 Aligned_cols=104 Identities=24% Similarity=0.242 Sum_probs=73.9
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC---ChhhhhcccCCcEEEccCCCCCC-hhhh-cCCCCCCEE
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELAD-IAAI-GQLKKLEIL 135 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~---lp~~~~~l~~L~~L~L~~~~~~~-~~~i-~~L~~L~~L 135 (620)
+..|.+.++.+........+-..+.+++.+|+.+|.+.. +-..+.++++|++|+++.|++.. +... -.+++|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 335666666652222223344568899999999998864 45566788999999999998776 5554 467899999
Q ss_pred ecCCCCCC--CCChhccCCCCCCEEeCCCCc
Q 007039 136 SLAYSNIN--QLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 136 ~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~ 164 (620)
-+.|+.+. ..-.....++.++.|.++.|.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 99888554 555567778888888877763
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.6e-06 Score=81.04 Aligned_cols=111 Identities=19% Similarity=0.124 Sum_probs=59.2
Q ss_pred cccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCCCC--------------hhccCCCCCCEEeCCCCcc
Q 007039 106 RLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQLP--------------VEIGQLTRLQLLDLSNCWW 165 (620)
Q Consensus 106 ~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~lp--------------~~i~~l~~L~~L~l~~~~~ 165 (620)
.+++|++|+|+.|.+.. + ..+...+.|++|.|..|++.... .-+..-++|+++...+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 44556666666655432 2 33445566666666666554211 123344567777766665
Q ss_pred ccccchH----HHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 166 LEVIAPN----VISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 166 ~~~~p~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
+..-+.. .+...+.|+.+.++.|.+...- .......+..+++|+.|++..|.
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG----~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEG----VTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCch----hHHHHHHHHhCCcceeeecccch
Confidence 4443322 2445566777776666554110 12334556677777777776654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.2e-06 Score=90.95 Aligned_cols=188 Identities=21% Similarity=0.251 Sum_probs=134.0
Q ss_pred cCCcEEEEccCCCCcCCC-CcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELP-ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
...+..+.+..+.+.... ....+++|..|++.+|.+ ..+... ...+.+|++|++++|.|..+.. +..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccc-hhhhhcchheeccccccccccc-hhhccchhhhe
Confidence 445666667777776633 345889999999999987 544432 3679999999999999988765 66778899999
Q ss_pred ccCCCCCChhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+.+|.+..+..+..++.|+.+++++|.+..+... ...+.+++.+++.++. +..+.. +..+..+..+++..+.+.
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~-- 221 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS-- 221 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce--
Confidence 9999999988888899999999999999988654 5889999999999987 444433 445555555566666554
Q ss_pred cccCCCCcchhhhcCCCC--CCEEEeecCCCCCCCCcccc-cCceEEEEE
Q 007039 194 KVEGGSNASLVELERLTE--LTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (620)
.+..+..+.. |+.+++..+.....+..+-. ..+..+.+.
T Consensus 222 --------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 222 --------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred --------eccCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence 1222333333 78888888876665422222 455555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=53.47 Aligned_cols=34 Identities=41% Similarity=0.554 Sum_probs=15.7
Q ss_pred CCCEEecCCCCCCCCChhccCCCCCCEEeCCCCc
Q 007039 131 KLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 131 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 164 (620)
+|++|++++|.|+.+|..+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3444444444444444444455555555555444
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.1e-07 Score=92.85 Aligned_cols=108 Identities=24% Similarity=0.172 Sum_probs=79.7
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
.-+++++.|+|+.|++..+. .+..|.+|++|||++|.++. |..-..-.+|+.|.+++|.++.+ .+|.+|.+|+.||+
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccch
Confidence 56788899999999887776 57888899999999988776 42111123488899999888887 47888999999999
Q ss_pred CCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 161 ~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|-..+.---..++.+..|++|++.+|.+.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8874222211122678888888988888765
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.4e-06 Score=69.16 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=48.6
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhc-ccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~-l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
.-.+|...++++|.++.+|+.|.. .+-.++|++.+|.+++ |..+..++.|+.|+++.|.+...|..|..|.+|..|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 344555555555555555554432 2355555555555555 55555555666666666555555555555556666655
Q ss_pred CCCccccccch
Q 007039 161 SNCWWLEVIAP 171 (620)
Q Consensus 161 ~~~~~~~~~p~ 171 (620)
.++. ...+|-
T Consensus 131 ~~na-~~eid~ 140 (177)
T KOG4579|consen 131 PENA-RAEIDV 140 (177)
T ss_pred CCCc-cccCcH
Confidence 5554 444444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.9e-06 Score=67.80 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=92.0
Q ss_pred cEEEEccCCCCcCCCC----cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 39 PIAISLPHRDIQELPE----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
..-++++.+.+-.++. ..+...|...++++|.+ .++|..+-.+++.+..+++..|.+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4556777776643333 22667888899999998 88999887888999999999999999999999999999999
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChh
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVE 148 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~ 148 (620)
++.|.+.. |..|..|.+|-+|+..++.+..+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 99999887 88888899999999999988888866
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=1.9e-05 Score=73.58 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=40.0
Q ss_pred CCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcc-cc-cCceEEEEEeCCCCCCCCC-cc
Q 007039 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VS-VELQRYKIRIGDGPEDEFD-PL 252 (620)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~-~~ 252 (620)
..+.++.+++.+|.+. ++.....-+.+++.|+.|+++.|.....-... +. .+|+.+-+ ++....|... ..
T Consensus 69 ~~~~v~elDL~~N~iS------dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL-NgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS------DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL-NGTGLSWTQSTSS 141 (418)
T ss_pred Hhhhhhhhhcccchhc------cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE-cCCCCChhhhhhh
Confidence 3455666666666554 12233444566666666666666543222211 22 45555554 3334444221 12
Q ss_pred ccccccccEEEEec
Q 007039 253 LVKSEASRLMMLKG 266 (620)
Q Consensus 253 ~~~~~~L~~L~l~~ 266 (620)
+..+|.++++.++.
T Consensus 142 l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 142 LDDLPKVTELHMSD 155 (418)
T ss_pred hhcchhhhhhhhcc
Confidence 33444555554444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00021 Score=63.06 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=82.2
Q ss_pred EEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhc-ccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~-l~~L~~L~L~~ 117 (620)
|.+++.+..+..+.... -......+++++|+. ..++. |..++.|..|.+.+|+|..+.+.+.. +++|.+|.+.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhhccccccccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44555555543333222 344566778888776 44443 56788888888888888777555543 46688888888
Q ss_pred CCCCC---hhhhcCCCCCCEEecCCCCCCCCC----hhccCCCCCCEEeCCCCc
Q 007039 118 CELAD---IAAIGQLKKLEILSLAYSNINQLP----VEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 118 ~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp----~~i~~l~~L~~L~l~~~~ 164 (620)
|++.+ ...+..++.|++|.+-+|.++.-+ -.++++++|+.||..+..
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88665 455667788888888888777543 247888999999987754
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00028 Score=62.34 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCC--hhccCCCCCCEEe
Q 007039 84 MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLD 159 (620)
Q Consensus 84 l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~ 159 (620)
......+|+++|.+..++. |..++.|.+|.+.+|.|.. |.--..+++|..|.+.+|.|.++- ..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4456667777777655543 5566677777777777665 222234556777777777666442 2345667777777
Q ss_pred CCCCccccccc---hHHHhCCcCCcEEEcCC
Q 007039 160 LSNCWWLEVIA---PNVISKLSQLEELYMGN 187 (620)
Q Consensus 160 l~~~~~~~~~p---~~~l~~l~~L~~L~l~~ 187 (620)
+-+|+ ++.-. ..++.++++|+.|++.+
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 76665 33222 22356677777777654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=4.3e-05 Score=70.56 Aligned_cols=78 Identities=24% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC---hhhhcCCCCCCE
Q 007039 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEI 134 (620)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~ 134 (620)
+.+.+.|+++||+. .++ +++.+++.|.+|.|+-|+|+.+.. +..|.+|+.|.|+.|.|.+ +..+.++++|++
T Consensus 18 l~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44566677777766 444 446788888888888888877754 6677888888888877765 355566666666
Q ss_pred EecCCC
Q 007039 135 LSLAYS 140 (620)
Q Consensus 135 L~l~~~ 140 (620)
|-|..|
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 666555
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0018 Score=59.86 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=19.0
Q ss_pred cCCCCCCEEecCCCCCC-CCC----hhccCCCCCCEEeCCCCc
Q 007039 127 GQLKKLEILSLAYSNIN-QLP----VEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 127 ~~L~~L~~L~l~~~~l~-~lp----~~i~~l~~L~~L~l~~~~ 164 (620)
-++++|+..+++.|.+. ..| .-|++-+.|.||.+++|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34455555555555333 222 224555566666666654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.00021 Score=66.12 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=64.3
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDL 160 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l 160 (620)
.+...+.|++-||.+.++.- ..+++-|++|.|+-|.|+....+..+++|+.|+|+.|.|.++.. -+.++++|+.|++
T Consensus 17 dl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45566667777777665542 34667777777777777776667777777777777777665532 3566777777777
Q ss_pred CCCccccccch----HHHhCCcCCcEEE
Q 007039 161 SNCWWLEVIAP----NVISKLSQLEELY 184 (620)
Q Consensus 161 ~~~~~~~~~p~----~~l~~l~~L~~L~ 184 (620)
..|.-.+.-+. ..+.-+++|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 76653333332 2245566666665
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.002 Score=59.53 Aligned_cols=82 Identities=23% Similarity=0.222 Sum_probs=41.4
Q ss_pred cCCCCcEEEcCCCC--CC-CChhhhhcccCCcEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCCh----hccCC
Q 007039 83 GMEGLKVLQFPGIG--SS-SLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPV----EIGQL 152 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~--~~-~lp~~~~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l 152 (620)
.+++|++|.++.|+ +. .++....++++|+++++++|.++. .....++.+|..|++..|....+-. .+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 45555555555552 21 233334445666666666665543 2344455556666666664443321 23345
Q ss_pred CCCCEEeCCCCc
Q 007039 153 TRLQLLDLSNCW 164 (620)
Q Consensus 153 ~~L~~L~l~~~~ 164 (620)
++|++|+-..+.
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 666666655443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0053 Score=56.93 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=91.5
Q ss_pred CCCccEEEcccCCCCCcc--cchHHHhcCCCCcEEEcCCCCCC----C-------ChhhhhcccCCcEEEccCCCCCC--
Q 007039 58 CPNLQLFLLYTEGNGPMQ--VSDHFFEGMEGLKVLQFPGIGSS----S-------LPSSLGRLINLQTLCLDWCELAD-- 122 (620)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~----~-------lp~~~~~l~~L~~L~L~~~~~~~-- 122 (620)
+..+..++++||.+.... -.....++-++|++.+++.-... . +.+.+-+|++|+.++|+.|.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455556666666551111 11122345566666666654321 1 23445678888888888887653
Q ss_pred h----hhhcCCCCCCEEecCCCCCCCCCh--------------hccCCCCCCEEeCCCCccccccchHHH----hCCcCC
Q 007039 123 I----AAIGQLKKLEILSLAYSNINQLPV--------------EIGQLTRLQLLDLSNCWWLEVIAPNVI----SKLSQL 180 (620)
Q Consensus 123 ~----~~i~~L~~L~~L~l~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~p~~~l----~~l~~L 180 (620)
| ..|.+-+.|.+|.++.|++..+.. -+..-+.|+...+..|+ +...|.... ..=.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCc
Confidence 3 567778889999999887764432 12345667777777765 555544321 111467
Q ss_pred cEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
+++.+..|.+.-.-. ..-....+..+++|+.|+++.|..
T Consensus 188 k~vki~qNgIrpegv---~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 188 KEVKIQQNGIRPEGV---TMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred eeEEeeecCcCcchh---HHHHHHHHHHhCcceeeeccccch
Confidence 777777666641100 111233455667777777776643
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0032 Score=58.29 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=25.9
Q ss_pred cccCCcEEEccCCC--CCC--hhhhcCCCCCCEEecCCCCCCCC--ChhccCCCCCCEEeCCCCc
Q 007039 106 RLINLQTLCLDWCE--LAD--IAAIGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 106 ~l~~L~~L~L~~~~--~~~--~~~i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~ 164 (620)
.+++|++|.++.|. +.. +....++++|+++++++|.++.+ -....++.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34455555555552 221 22233335555555555544421 0123344444455555543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0013 Score=58.31 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=32.7
Q ss_pred cccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCC
Q 007039 465 YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKL 539 (620)
Q Consensus 465 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 539 (620)
.++++++.|.+.+|..+.+.......+-.++|+.|+|++|+.+++- ....+. .|++|+.|.|.+++..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~------~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLL------KLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHH------HhhhhHHHHhcCchhh
Confidence 3455555555556555554432222233456666666666655542 112222 2555555555555433
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0051 Score=33.71 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=9.7
Q ss_pred CCEEecCCCCCCCCChhcc
Q 007039 132 LEILSLAYSNINQLPVEIG 150 (620)
Q Consensus 132 L~~L~l~~~~l~~lp~~i~ 150 (620)
|++||+++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.033 Score=47.15 Aligned_cols=102 Identities=18% Similarity=0.299 Sum_probs=37.3
Q ss_pred HHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCC
Q 007039 79 HFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTR 154 (620)
Q Consensus 79 ~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~ 154 (620)
..|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +.. -..|.++.+++.+.+.. .+..++. .+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3344455555555543 233332 23444445555555442 333 13444454555555543 3333322 2333555
Q ss_pred CCEEeCCCCccccccchHHHhCCcCCcEEEcC
Q 007039 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 155 L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 186 (620)
|+.+++... +..++...+.+. +|+.+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 555555432 334444444454 55555544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.037 Score=46.84 Aligned_cols=116 Identities=16% Similarity=0.313 Sum_probs=58.8
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
++++|+.+.+.. .. ..++...|..++.|+.+.+..+ +..++ ..+..+..++.+.+.. .+.. ...|....+|+
T Consensus 10 ~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 566777777763 22 5666666788888888888774 56654 3667777788888865 3333 35677788888
Q ss_pred EEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCc
Q 007039 134 ILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE 181 (620)
Q Consensus 134 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~ 181 (620)
.+++..+ +..++. .+.+. +|+.+.+..+ +..++...|.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 8888664 555543 35555 8888887652 5667776677776663
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.0085 Score=53.25 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=53.8
Q ss_pred ccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCc
Q 007039 335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDL 407 (620)
Q Consensus 335 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 407 (620)
....++.++.|.+.+|..+.+|....+. +..++|+.|+|++|+++++- ....+..+++|+.|.+.+.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 4456677888888888888888877765 37889999999999998875 3346778888888888875543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.0093 Score=32.65 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=9.8
Q ss_pred CcEEEcCCCCCCCChhhhh
Q 007039 87 LKVLQFPGIGSSSLPSSLG 105 (620)
Q Consensus 87 Lr~L~l~~~~~~~lp~~~~ 105 (620)
|++|++++|+++.+|+.|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.048 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=5.5
Q ss_pred CCCEEecCCCCCCCC
Q 007039 131 KLEILSLAYSNINQL 145 (620)
Q Consensus 131 ~L~~L~l~~~~l~~l 145 (620)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.084 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=5.7
Q ss_pred CCcEEEcCCCCCCCC
Q 007039 86 GLKVLQFPGIGSSSL 100 (620)
Q Consensus 86 ~Lr~L~l~~~~~~~l 100 (620)
+|++|++++|++.++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555544443
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.3 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=11.1
Q ss_pred CCCCEEecCCCCCCCCChh
Q 007039 130 KKLEILSLAYSNINQLPVE 148 (620)
Q Consensus 130 ~~L~~L~l~~~~l~~lp~~ 148 (620)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.3 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=11.1
Q ss_pred CCCCEEecCCCCCCCCChh
Q 007039 130 KKLEILSLAYSNINQLPVE 148 (620)
Q Consensus 130 ~~L~~L~l~~~~l~~lp~~ 148 (620)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.019 Score=52.09 Aligned_cols=83 Identities=13% Similarity=0.023 Sum_probs=50.4
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
..++...+||++.|+...+-..|..+..|..|+++.+.+.- |.+++.+..++.+++..|..+..|.+.++.+++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 45566666666666655555555555556666666665555 56666666666666666666666666666666666666
Q ss_pred CCCc
Q 007039 161 SNCW 164 (620)
Q Consensus 161 ~~~~ 164 (620)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5544
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.29 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=11.1
Q ss_pred cCCccEEEEecCCCccee
Q 007039 467 CQNLTKVTVWSCHRLKYL 484 (620)
Q Consensus 467 l~~L~~L~i~~C~~L~~l 484 (620)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356666666666666654
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=86.39 E-value=0.39 Score=27.40 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=12.5
Q ss_pred ccCccEEEeccCcCccc
Q 007039 592 FSKLKKLKISGCNNLLN 608 (620)
Q Consensus 592 ~~sL~~L~i~~C~~l~~ 608 (620)
+++|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36777788888887765
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=85.03 E-value=0.94 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCCCCCChhh
Q 007039 85 EGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~~lp~~ 103 (620)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776666653
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=85.03 E-value=0.94 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCCCCCChhh
Q 007039 85 EGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~~lp~~ 103 (620)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776666653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.18 E-value=0.069 Score=48.65 Aligned_cols=84 Identities=7% Similarity=-0.024 Sum_probs=60.0
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEE
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL 135 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 135 (620)
.+....+||++.|.. ..+-.. |+.+..+..|+++.+.+..+|+.++.+..++.+++..|..+. |.+++++++++++
T Consensus 40 ~~kr~tvld~~s~r~--vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL--VNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHH--Hhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 455666677766654 333222 355677777888888888888888888888888887777776 7888888888888
Q ss_pred ecCCCCCC
Q 007039 136 SLAYSNIN 143 (620)
Q Consensus 136 ~l~~~~l~ 143 (620)
++.++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88887543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 93 PGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQ 151
+ S+ L+NLQ+L L+W + + A+I L+ L+ L + S ++ L I
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227
Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL----E 207
L +L+ LDL C L P + + L+ L + + ++L+ L
Sbjct: 228 LPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD------------CSNLLTLPLDIH 274
Query: 208 RLTELTTLEIE 218
RLT+L L++
Sbjct: 275 RLTQLEKLDLR 285
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 26/147 (17%)
Query: 84 MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNI 142
G L+ + P RL +LQ + +D L ++ + Q LE L+LA + +
Sbjct: 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139
Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVI--------APNVISKLSQLEELYMGNGFSGWEK 194
LP I L RL+ L + C L + A L L+ L +
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL--------- 190
Query: 195 VEGGSNASLVEL----ERLTELTTLEI 217
+ L L L +L+I
Sbjct: 191 ----EWTGIRSLPASIANLQNLKSLKI 213
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 98 SSLPSSLGRLINLQTLCLDWC-ELADI-AAIGQLKKLEILSLA-YSNINQLPVEIGQLTR 154
S+L ++ L L+ L L C L + G L+ L L SN+ LP++I +LT+
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L+ LDL C L + P++I++L + +
Sbjct: 279 LEKLDLRGCVNLSRL-PSLIAQLPANCIILVPP 310
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 7/117 (5%)
Query: 74 MQVSDHFFEGMEGLKVLQFPGIGS-SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKL 132
M S H G + L F G + L + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNP 58
Query: 133 EILSLAYSNINQLPVEIGQLTRLQL--LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+I + + + T+ L+L + L P+ +LS L+ + +
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDA 113
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 99 SLPSSLGRLINLQTLCLDWC-ELADI-AAIGQLKKLEILSLAY-SNINQLPVEIGQLTRL 155
+ P G L+ L L C L + I +L +LE L L N+++LP I QL
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Query: 156 QLLDLSNC 163
++ +
Sbjct: 304 CIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 98 SSLPSSLGRLINLQTLCLDWCE-LADI-AAIGQLKKLEILSLAYSNINQLP 146
+LP + RL L+ L L C L+ + + I QL I+ + QL
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 22/189 (11%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
+ + + + NL+ L GN Q++D + L L + +
Sbjct: 49 LVVAGEKVASIQGIEYLTNLEY--LNLNGN---QITDISPLSNLVKLTNLYIGTNKITDI 103
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
+ L L NL+ L L+ ++DI+ + L K+ L+L ++ + +T L L +
Sbjct: 104 SA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162
Query: 161 SNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG---------GSN--ASLVELER 208
+ ++ + P I+ L+ L L + N + N + +
Sbjct: 163 TES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219
Query: 209 LTELTTLEI 217
+T L +L+I
Sbjct: 220 MTRLNSLKI 228
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 9e-12
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
+ L ++ L + ++A I I L LE L+L + I + + L +L L +
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYI 95
Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
+ I+ + L+ L ELY+ + S + L LT++ +L +
Sbjct: 96 GTN-KITDISA--LQNLTNLRELYLNEDNIS-----------DISPLANLTKMYSLNL 139
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 22/131 (16%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
+ + + L +L + ++ D++ + L +L L + + I+ + + LT+L++L++
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVG 273
Query: 162 NCWWLEVIAPNVISKLSQLEELYMGN---------GFSGWEKVEG---GSN--ASLVELE 207
+ ++ +V++ LSQL L++ N G + N + L
Sbjct: 274 SN---QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA 330
Query: 208 RLTELTTLEIE 218
L+++ + +
Sbjct: 331 SLSKMDSADFA 341
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 19/134 (14%)
Query: 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL 145
G L + + L L + D+ +L+ + L +A + +
Sbjct: 1 GAATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59
Query: 146 PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASL 203
I LT L+ L+L+ + I+P +S L +L LY+G N +
Sbjct: 60 Q-GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGT------------NKITDI 103
Query: 204 VELERLTELTTLEI 217
L+ LT L L +
Sbjct: 104 SALQNLTNLRELYL 117
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
I ++ L L N +++D + L L+ S + + + L
Sbjct: 211 ITDITPVANMTRLNS--LKIGNN---KITDLSPLANLSQLTWLEIGTNQISDINA-VKDL 264
Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166
L+ L + +++DI+ + L +L L L + + +E IG LT L L LS +
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-I 323
Query: 167 EVIAPNVISKLSQLEELYMGN 187
I P ++ LS+++ N
Sbjct: 324 TDIRP--LASLSKMDSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 9e-06
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL- 100
+ + + I +L L L N Q+SD ++ L L+ +GS+ +
Sbjct: 226 LKIGNNKITDLSPLANLSQLTW--LEIGTN---QISD--INAVKDLTKLKMLNVGSNQIS 278
Query: 101 -PSSLGRLINLQTLCLDWCELA--DIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
S L L L +L L+ +L D+ IG L L L L+ ++I + + L+++
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDS 337
Query: 158 LDLSN 162
D +N
Sbjct: 338 ADFAN 342
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 96 GSSSLPSSLGRLINLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLP--VEIGQ 151
G S++ SSL L L++L L + ++ L L L+ ++++ + +G
Sbjct: 65 GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124
Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
+ L+ L++S+ + KL+ LE L + N S G + V +
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS------GANVVGWVLSDGCG 178
Query: 211 ELTTL 215
EL L
Sbjct: 179 ELKHL 183
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 22/152 (14%)
Query: 51 ELPERLQCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLI 108
++ L+ +L+ L L +G V +G LK L G S + + R +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV 200
Query: 109 NLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWL 166
NL+ L + + I +G L+ L ++ + ++ I T L+LL++S+
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS---- 256
Query: 167 EVIAPNVI------SKLSQLEELYM-GNGFSG 191
N L L+ L + N F+G
Sbjct: 257 -----NQFVGPIPPLPLKSLQYLSLAENKFTG 283
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 31/124 (25%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCEL---------------------------ADIAAIGQL 129
S ++ L+ L + + ++ G
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS--GAC 293
Query: 130 KKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-N 187
L L L+ ++ +P G + L+ L LS+ + + + + K+ L+ L + N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 188 GFSG 191
FSG
Sbjct: 354 EFSG 357
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 17/131 (12%)
Query: 99 SLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRL 155
+PS L NL + L L IG+L+ L IL L+ ++ + +P E+G L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 156 QLLDLSNCWWLEVIAPNVIS-----KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT 210
LDL+ N+ + + + N +G V ++ E
Sbjct: 541 IWLDLNT---------NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 211 ELTTLEIEVPD 221
L + +
Sbjct: 592 NLLEFQGIRSE 602
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 9/138 (6%)
Query: 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELA- 121
+ L N + GL+ L + S +L +L L L+
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114
Query: 122 ---DIAAIGQLKKLEILSLAYSNIN-QLPVEIG-QLTRLQLLDLSNCWWLEVIAPNV--I 174
+ ++G L+ L+++ + ++ V G +L L++LDLS
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174
Query: 175 SKLSQLEELYM-GNGFSG 191
+L+ L + GN SG
Sbjct: 175 DGCGELKHLAISGNKISG 192
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 103 SLGRLI--NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
++ +L + L+ A +++ L LE L L+ S+IN L LDL
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107
Query: 161 SNCWWLEVIAPNV-ISKLSQLEELYM-GNGFSGWEKVEGGSN-ASLVEL 206
S + + S L+ L + N KV GG SL L
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 39/155 (25%), Positives = 57/155 (36%), Gaps = 21/155 (13%)
Query: 51 ELPERL-QCPNLQLFLLYTEGN---GPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLG 105
+P C L+ L N G + M GLKVL S LP SL
Sbjct: 309 AVPPFFGSCSLLESLALS--SNNFSGE--LPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 106 RL-INLQTLCLDWCEL-----ADIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLL 158
L +L TL L ++ L+ L L + ++P + + L L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 159 DLSNCWWLE-VIAPNVISKLSQLEELYM-GNGFSG 191
LS +L I P+ + LS+L +L + N G
Sbjct: 424 HLSFN-YLSGTI-PSSLGSLSKLRDLKLWLNMLEG 456
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 15/104 (14%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCEL--ADIAAIGQLKKLEILSLAYSNINQL----PVEIG 150
L RL + + L ++Y N L P EIG
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY---NMLSGYIPKEIG 653
Query: 151 QLTRLQLLDLS-NCWWLE-VIAPNVISKLSQLEELYM-GNGFSG 191
+ L +L+L N + I P+ + L L L + N G
Sbjct: 654 SMPYLFILNLGHND--ISGSI-PDEVGDLRGLNILDLSSNKLDG 694
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-12
Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 15/138 (10%)
Query: 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
M L + I + L + + N++ L ++ + I L LE L +
Sbjct: 40 EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98
Query: 141 NINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGS 199
++ + + LT L LLD+S+ + I+ L ++ + +
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDL------------SY 145
Query: 200 NASLVELERLTELTTLEI 217
N ++ ++ L L L+
Sbjct: 146 NGAITDIMPLKTLPELKS 163
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIG-SSS 99
I+L + ++ +L N++ L ++ + G+ L+ L+ G +S
Sbjct: 49 ITLANINVTDLTGIEYAHNIKD--LTINNI---HATNYNPISGLSNLERLRIMGKDVTSD 103
Query: 100 LPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
+L L +L L + D + I L K+ + L+Y+ + + L L+
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L++ + I +L +LY +
Sbjct: 164 LNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 11/63 (17%), Positives = 21/63 (33%)
Query: 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
+ + + G+ + L L L++L + + + D I KL L
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191
Query: 141 NIN 143
I
Sbjct: 192 TIG 194
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 13/127 (10%)
Query: 95 IGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIGQ 151
+ +Q + + + L ++ ++KKL +L Y+ + G
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351
Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
+L L+L+ + I N Q+E L N ++ + + ++
Sbjct: 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK--------YIPNIFDAKSVS 402
Query: 211 ELTTLEI 217
++ ++
Sbjct: 403 VMSAIDF 409
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 98 SSLPSSL-GRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAY--------SNINQL 145
+ +P++ G ++ L +L I + + + +Y N + L
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Query: 146 PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEK-VEGGSNASL 203
+ + ++LSN + + S S L + + GN + K N +
Sbjct: 426 DPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 204 VELERLTEL 212
LT +
Sbjct: 485 KNTYLLTSI 493
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 19/162 (11%)
Query: 43 SLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--------QFP 93
S+ ++ L + N+ L N + F L + + P
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINL--SNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 94 GIGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIG 150
+ L ++ L + +L + L L + L+Y++ ++ P +
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533
Query: 151 QLTRLQLLDLSNCWWLEV-----IAPNVISKLSQLEELYMGN 187
+ L+ + N + P I+ L +L +G+
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 35/145 (24%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADI---------------------AAIGQLKKLEILS 136
+ + ++ RL L+ + LK L +
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255
Query: 137 LAYSN-INQLPVEIGQLTRLQLLDLSNC-------WWLEVIAPNVISKLSQLEELYM-GN 187
+ + +LP + L +QL++++ + A +++ +Y+ N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 188 GFSGWEKVEGGSNASLVELERLTEL 212
SL ++++L L
Sbjct: 316 NLK-----TFPVETSLQKMKKLGML 335
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADI--------AAIGQLKKLEILSLAYSNINQLPVEI 149
S P+ L+ + A I L L + ++I ++ +I
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585
Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185
+ +LD+ + I + + + +
Sbjct: 586 --TPNISVLDIKDN-PNISIDLSYVCPYIEAGMYML 618
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 34/143 (23%)
Query: 97 SSSLPSSLGRLI--NLQTLCLDWCEL--ADIAAIGQLKKLEILSLAYSNINQLPVEIGQL 152
+ R +L C++ + + K + +NI + + +L
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL 205
Query: 153 TRLQLLDLSNC----------WWLEVIA--------PNVISKLSQLEELYM-GNGFSGWE 193
T+L+ + N W E L L ++ +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-- 263
Query: 194 KVEGGSNASL-VELERLTELTTL 215
L L+ L E+ +
Sbjct: 264 --------KLPTFLKALPEMQLI 278
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 21/177 (11%)
Query: 49 IQELPERL--QCPNLQLFLLYTEGNG-PMQVSDHFFEGMEGLKVL-----QFPGIGSSSL 100
+ L + P+L + GN +++ E +E L+ L
Sbjct: 313 FENLCQISASNFPSLTHLSIK--GNTKRLELGTGCLENLENLRELDLSHDDIETSDCC-- 368
Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE--IGQLTRLQ 156
L L +LQ+L L + E + A + +LE+L LA++ + + L L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
+L+LS+ L++ + + L L+ L + GN F SL L RL L
Sbjct: 429 VLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPK---GNIQKTNSLQTLGRLEIL 481
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 9/163 (5%)
Query: 53 PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL---GRLIN 109
P Q N + ++ L + F + + ++ ++
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255
Query: 110 LQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
++++ L +I L+ L L +++++LP + L+ L+ L LS E
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFE 314
Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
+ S L L + GN ++ G +L L L
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENLENLREL 355
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
+ ++ RLINL L L C++ I +L+ L L + + +
Sbjct: 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
L+ L + I + LE LY+ N S ++ +L+ L
Sbjct: 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS---IKLPKGFPTEKLKVL 158
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 10/154 (6%)
Query: 42 ISLPHRDIQELPERLQ-CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSS 98
+ L + ELP L L+ L N + L L G
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKK--LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
Query: 99 SLPSSLGRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
L L NL+ L L ++ + L L+ L+L+Y+ L E +
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+L+LLDL+ A + L L+ L + +
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 7/132 (5%)
Query: 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKV----LQFPGIGSSSLPSSLGRLINLQTLCLDW 117
L+L E +S FEG+ + V LQ + ++ LQ L L
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTA 287
Query: 118 CELADI-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175
L+++ + + L L+ L L+ + L + L L + + +
Sbjct: 288 THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347
Query: 176 KLSQLEELYMGN 187
L L EL + +
Sbjct: 348 NLENLRELDLSH 359
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 79/558 (14%), Positives = 177/558 (31%), Gaps = 96/558 (17%)
Query: 81 FEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSL 137
F + L L + + L TL L L +A A+ K L+ L
Sbjct: 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112
Query: 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKV 195
+ I+ + + L+ L L + + I +L+ L N +
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY---L 168
Query: 196 EGGSNASLVELERLT-ELTTLEIE-VPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLL 253
+SL + L+ L +I + F S+ + + L
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL------VIFKGL 222
Query: 254 VKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDG--EGFP 311
S L + + + D + + + ++ +E++ + + F
Sbjct: 223 KNSTIQSLWLGT----FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278
Query: 312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR 371
L+ L +T + + + L+ L L E +C +F +L
Sbjct: 279 GLQELDLTATH-LSELPSGLVG-----LSTLKKLVLSA-NKFENLCQISA---SNFPSLT 328
Query: 372 IINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAED 431
+++ K L + + +NL L+++ + D ++
Sbjct: 329 HLSIKGNTKRLELGTGCL-ENLENLRELDLSHDD-IETS--------------------- 365
Query: 432 DPVHQVTFPRLEELELVSLTN--IKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSM 489
+ L L+ ++L+ L ++ F+ C L + + RLK + S
Sbjct: 366 -DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE---CPQLELLDLAFT-RLKVKDAQSP 420
Query: 490 VNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLH-------WLPKLSSF 542
+L L+ L + + ++ F P L +L+L + K +S
Sbjct: 421 FQNLHLLKVLNLSHSL-LDISSEQL-------FDGLPALQHLNLQGNHFPKGNIQKTNSL 472
Query: 543 ASPEDVIH--------TEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSK 594
+ + + + + L + + +S ++ + ++ S
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTS----LKMMNHVDLSHN----RL--TSSSIEALSH 522
Query: 595 LKKLKISGCNNLLNIFPP 612
LK + ++ +N ++I P
Sbjct: 523 LKGIYLNLASNHISIILP 540
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 76 VSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQ 128
S+ F+G+ L+ L FP + +SL L L+ L L +C+L+ I A
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Query: 129 LKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
LK + + L+++ + +E + L+L++ + +I P+++ LSQ + +
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLRQ 556
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 12/148 (8%)
Query: 49 IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--QFPGIGSSSLPSSL 104
+ + E L+ G + + L+ L I SS
Sbjct: 93 LIFMAETALSGPKALKHLFFI--QTGISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKG 149
Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSN--INQLPVEIGQLTRLQLLDL 160
L+ L + + + L++ LSL + I + Q L+
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209
Query: 161 S-NCWWLEVIAPNVISKLSQLEELYMGN 187
L + S + L +
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFED 237
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
++ + LQ +G S+ + L NL + +L DI + L KL + + +
Sbjct: 42 QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100
Query: 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGS 199
I + + LT L L L N + I P + L+ L L + N S
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTIS--------- 147
Query: 200 NASLVELERLTELTTLEI 217
+ L LT L L
Sbjct: 148 --DISALSGLTSLQQLSF 163
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 24/183 (13%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRL 107
I ++ NL L N +SD + GL LQ G+ L L
Sbjct: 124 ITDIDPLKNLTNLNR--LELSSN---TISD--ISALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
L+ L + +++DI+ + +L LE L + I+ + +G LT L L L+ +
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGN---Q 232
Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEG---------GSN--ASLVELERLTELTTL 215
+ ++ L+ L +L + N S + G G+N +++ L LT LT L
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292
Query: 216 EIE 218
E+
Sbjct: 293 ELN 295
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 25/172 (14%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
+ ++ + NL+ L N Q+SD + L L + + L +L
Sbjct: 189 VSDISVLAKLTNLES--LIATNN---QISD--ITPLGILTNLDELSLNGNQLKDIGTLAS 241
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
L NL L L +++++A + L KL L L + I+ + + LT L L+L+ L
Sbjct: 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNEN-QL 299
Query: 167 EVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
E I+P IS L L L + N S + + LT+L L
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNIS-----------DISPVSSLTKLQRLFF 338
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
+ L L L L L ++++I+ + L L L L + + + I L L L L
Sbjct: 259 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLY 317
Query: 162 NCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSN-----------ASLVELERL 209
+ I+P +S L++L+ L+ N S + +N + L L L
Sbjct: 318 FNN-ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL 374
Query: 210 TELTTLEIE 218
T +T L +
Sbjct: 375 TRITQLGLN 383
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
S L + TL D + I + L L ++ + + + + + LT+L + +
Sbjct: 39 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 97
Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
+N + I P ++ L+ L L + N + + L+ LT L LE+
Sbjct: 98 NNN-QIADITP--LANLTNLTGLTLFNNQIT-----------DIDPLKNLTNLNRLEL 141
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
I L L L N Q+S+ + GL L + + L S +
Sbjct: 255 ISNLAPLSGLTKLTE--LKLGAN---QISN--ISPLAGLTALTNLELNENQLEDISPISN 307
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
L NL L L + ++DI+ + L KL+ L + ++ + + LT + L +
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN--- 363
Query: 167 EVIAPNVISKLSQLEELYMGN 187
++ ++ L+++ +L + +
Sbjct: 364 QISDLTPLANLTRITQLGLND 384
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
++++ NL L N +SD + L+ L F S + S L L
Sbjct: 299 LEDISPISNLKNLTY--LTLYFN---NISDISPVSSLTKLQRLFFYNNKVSDVSS-LANL 352
Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
N+ L +++D+ + L ++ L L PV + +
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT--GA 410
Query: 168 VIAPNVISKLSQLEELY 184
+IAP IS E
Sbjct: 411 LIAPATISDGGSYTEPD 427
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 94/599 (15%), Positives = 182/599 (30%), Gaps = 105/599 (17%)
Query: 46 HRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSS 103
++ ++P+ L + L N V+ F +E L++L+ + +
Sbjct: 13 FCNLTQVPQVL--NTTER--LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68
Query: 104 LGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVE---IGQLTRLQLL 158
L NL+ L L ++ + A L L L L + ++ ++ L L L
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEK--VEGGSNASLVELERLTELTTL 215
DLS + KL+ L+ + N + +E +L L +
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF-SLAANSLY 187
Query: 216 EIEVPDAEILPPDFVSVELQRYKI---RIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI 272
D F ++ L+ + F + KS+A L++ I
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG- 246
Query: 273 LQENDGTKMLLQRTEDLWLETLEGV---QSVVHELDDG--EGFPRLKRLLVTDCSEILHI 327
++ L ++ + V L+ E LK L +
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN------ 300
Query: 328 VGSVRRVRCEVFPLLEALSLMFLTN--LETICYSQLREDQSFSNLRIINVDSCRKLKYLF 385
+ ++ E F L+ L ++ L+ L + S + I++ + +
Sbjct: 301 --KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF---YGLPKVAYIDLQKN-HIAIIQ 354
Query: 386 SFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL 445
+ K L +LQ + + D L I P + ++
Sbjct: 355 DQTF-KFLEKLQTLDLRDN-ALTTIHF--------------------------IPSIPDI 386
Query: 446 ELVSLTNIKKLWSDQFQG--IYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503
L S + L I+ +N RL+ L + + LQ L +
Sbjct: 387 FL-SGNKLVTLPKINLTANLIHLSEN----------RLENLDILYFLLRVPHLQILILNQ 435
Query: 504 CRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKV 563
R ++ G P L L L + TE+
Sbjct: 436 NRF-------SSCSGDQTPSENPSLEQLFL-------GENMLQLAWETELCWDVFEG--- 478
Query: 564 RLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNI----FPPLVRLLY 618
L L+VL+++ L + + L+ L ++ N L + P + +L
Sbjct: 479 -LSHLQVLYLNHN-YLNSL--PPGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILD 532
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 76/512 (14%), Positives = 171/512 (33%), Gaps = 96/512 (18%)
Query: 133 EILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192
I + N+ Q+P L + L LS ++ + + L QL+ L +G+ ++
Sbjct: 7 RIAFYRFCNLTQVP---QVLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPL 62
Query: 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPL 252
++ + +L L L +L KI D F L
Sbjct: 63 T-IDKEAFRNLPNLRIL-----------------------DLGSSKIY--FLHPDAFQGL 96
Query: 253 LVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQ---SVVHELDDGEG 309
L L+ L + +L+ L+ L + + + L
Sbjct: 97 ------FHLFELR-------LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143
Query: 310 FPRLKRLLVTDCSEILHIVG-SVRRVRCEVFPLLEALSLMFL-------TNLETICYSQL 361
F +L L + + + V L+ +L F + ++ + +
Sbjct: 144 FGKLNSL------KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Query: 362 REDQSFSNLRIINVDSCR-------KLKYLFSFSMAKNLLRLQKVKVEDCDDLKM-IIGP 413
L I++V S S A +L+ + +
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 414 DMEKPPTTQGFIEINAEDDP---VHQVTFPRLEELELVSLTN--IKKLWSDQFQGIYCCQ 468
+ ++ ++ F L++L++++L I K+ + F G+
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL---D 314
Query: 469 NLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR-------SIEGVVNTTTLGGRD- 520
NL + + S + L L+S + L ++ +++++ + + + TL RD
Sbjct: 315 NLQVLNL-SYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Query: 521 ---EFKVFPKLHYLSLHW-----LPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLH 572
P + + L LPK++ A+ + ++ + +R+P L++L
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 573 ISEADKLRKIWHHQLASKSFSKLKKLKISGCN 604
+++ ++ Q S++ L++L +
Sbjct: 433 LNQ-NRFSSCSGDQTPSEN-PSLEQLFLGENM 462
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 7/141 (4%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGR 106
I + + +Y N + D ++ L I + +
Sbjct: 111 ISRVSCSR-GQGKKN--IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
L+ L L + + D+ KL+ L L+ + + + E + + L N L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226
Query: 167 EVIAPNVISKLSQLEELYMGN 187
+I + LE +
Sbjct: 227 VLI-EKALRFSQNLEHFDLRG 246
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Query: 78 DHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILS 136
+ L+ L + + L+TL L +LA + + +S
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220
Query: 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184
L + + + + L+ DL + + SK +++ +
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 26/175 (14%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSS 103
I E+ + + + + Q + +K L I +
Sbjct: 2 IHEIKQNGN----RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI----SAAD 53
Query: 104 LGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC 163
L L+ L L L + + L L L L N + E+ ++ L +N
Sbjct: 54 LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN---NYV-QELLVGPSIETLHAANN 109
Query: 164 WWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE----RLTELT 213
+ ++ + + +Y+ N + ++ G + + L+ + +
Sbjct: 110 -NISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 99 SLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRL 155
++ + + L + ++ L L+ + ++Q+ + T+L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 156 QLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215
+LL+LS+ L + LS L L + N N + EL + TL
Sbjct: 61 ELLNLSSN-VLYETLD--LESLSTLRTLDLNN------------N-YVQELLVGPSIETL 104
Query: 216 EI 217
Sbjct: 105 HA 106
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
+ + + + L +L I A+ + LE L + + + +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Query: 157 LLDLSN 162
+ ++
Sbjct: 264 VQTVAK 269
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 15/177 (8%)
Query: 49 IQELPERL-QCPNLQLFLLY-------TEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSS 98
+ +LP+ L P LQ + + + +++ +
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563
Query: 99 SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTR-LQL 157
+SL +++ L L ++ + A G KL L L Y+ I ++P + T ++
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623
Query: 158 LDLSNCWWLEVIAPNV-ISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
L S+ L+ I + + + N E + + + +
Sbjct: 624 LGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTV 678
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 18/162 (11%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--------QFP 93
I R+I + + N + N + F + + P
Sbjct: 656 IGSEGRNISCSMDDYKGINAST--VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713
Query: 94 GIGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIG 150
+ L T+ L + +L + L L + ++Y+ + P +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773
Query: 151 QLTRLQLLDLSNCWWLEV-----IAPNVISKLSQLEELYMGN 187
++L+ + + E P I+ L +L +G+
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 25/118 (21%)
Query: 95 IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNIN-------QLPV 147
I L L L + + +KK +SL + I +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442
Query: 148 EIGQLTRLQLLDLSNC------------------WWLEVIAPNVISKLSQLEELYMGN 187
I +LT+LQ++ +N S L L ++ + N
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLT 153
++ R L +L + + ++ + +L L++L+L ++ ++QL + T
Sbjct: 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERL 209
L L L + ++ I N K L L + NG S + G+ L L+ L
Sbjct: 98 NLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS---TKLGTQVQLENLQEL 150
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 10/159 (6%)
Query: 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLD 116
P L++ L + N Q+SD F L L + + NL TL L
Sbjct: 72 LPMLKVLNL--QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129
Query: 117 WCELADI--AAIGQLKKLEILSLAYSNINQLPVE---IGQLTRLQLLDLSNCWWLEVIAP 171
L+ QL+ L+ L L+ + I L E I + L+ L+LS+ ++ +P
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSP 188
Query: 172 NVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
+ +L L++ + + + L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCL 115
+ L +L N ++ F + L+VL IG L N+ + L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 116 DWCELADI--AAIGQLKKLEILSLAY---SNINQLPVEIGQLTRLQLLDLSNCWWLEVIA 170
+ + + + + L+ L L N++ P L L +LDLSN + I
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIN 496
Query: 171 PNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTL 215
+++ L +LE L + N + K + L+ L+ L L
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWK-HANPGGPIYFLKGLSHLHIL 541
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 36/179 (20%), Positives = 58/179 (32%), Gaps = 21/179 (11%)
Query: 49 IQELPERL--QCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105
I+E L LFL + + ++ L S+ ++
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 106 ---RLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLD 159
+ NL L L + L + + L +LE L Y+NI L + L ++ L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 160 LSN--------CWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
L L I L LE L M N G ++ L+ L+ L
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG---IKSNMFTGLINLKYL 358
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 46/175 (26%)
Query: 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLGRLINLQT 112
N+ +Y N +Q++ + F + L+ L + SS PS L NL
Sbjct: 429 LENIFE--IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--PSPFQPLRNLTI 484
Query: 113 LCLDWCELADI----------------------------------AAIGQLKKLEILSLA 138
L L +A+I + L L IL+L
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSG 191
+ +++PVE L L+++DL L + +V + L+ L + N +
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITS 598
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 20/160 (12%)
Query: 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLGRLINLQTLCLDW 117
++ D F+ ++ L+ L PGI + LINL+ L L
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSN 362
Query: 118 CELADIAAIGQ------LKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIA 170
+ + L IL+L + I+++ + L L++LDL + +
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 171 PNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
L + E+Y+ N + + S A + L+RL
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQ---LTRNSFALVPSLQRL 459
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 29/120 (24%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLT 153
S LQ L L CE+ I A L L L L + I L + L+
Sbjct: 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
LQ L L + I L L+EL + N L L L
Sbjct: 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHL 154
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 8e-11
Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 11/160 (6%)
Query: 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117
P+L+ L G G LK L G ++ S+ L L+ L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 118 CELADI---AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNV 173
L + + L+ L L +++++ L+ L++L ++ + E P++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 174 ISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
++L L L + S + L L L
Sbjct: 466 FTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQVL 499
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
Query: 81 FEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILS 136
F G+E L+ L F + S S L NL L + L LE+L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 137 LAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWE 193
+A ++ + LP +L L LDLS C LE ++P + LS L+ L M N F
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFS-- 508
Query: 194 KVEGGSNASLVELERL 209
++ L L+ L
Sbjct: 509 -LDTFPYKCLNSLQVL 523
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
I+ + + Q L Q + ++ L G S L
Sbjct: 294 IERVKDFSYNFGWQH--LELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----AFSEVDLP 347
Query: 109 NLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164
+L+ L L L+ + L+ L L+++ + + L +L+ LD +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVEL 206
++ +V L L L + +SL L
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 13/173 (7%)
Query: 49 IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSL 104
IQ L +LQ + + + ++ LK L I S LP
Sbjct: 88 IQSLALGAFSGLSSLQKLVAV--ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKLEI----LSLAYSNINQLPVEIGQLTRLQLL 158
L NL+ L L ++ I + L ++ + L L+ + +N + + RL L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
L N + + I L+ LE + F +E ++L L LT
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 78 DHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLE 133
+ F G+ L+VL+ G + LP L NL L L C+L + A L L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYM-GNGFS 190
+L+++++N L L LQ+LD S + + S L L + N F+
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 191 G 191
Sbjct: 557 C 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 25/163 (15%), Positives = 40/163 (24%), Gaps = 30/163 (18%)
Query: 59 PNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQF-------PGIGSSSLPSSLGRLINL 110
L+ L+ E + +EGL L + L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE--------------------IG 150
+ L + + + L L Q P
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344
Query: 151 QLTRLQLLDLS-NCWWLEVIAPNVISKLSQLEELYM-GNGFSG 191
L L+ LDLS N + + L+ L + NG
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 4/150 (2%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
++ + P+L+ L G G LK L G ++
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 102 SSLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
S+ L L+ L L ++ L+ L L +++++ I L+ L++
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L ++ + E P++ ++L L L +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 94/551 (17%), Positives = 151/551 (27%), Gaps = 110/551 (19%)
Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
S LQ L L CE+ I A L L L L + I L + L+ LQ
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLE 216
L L + I L L+EL + N L L L
Sbjct: 105 LVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ-----SFKLPEYFSNLTNLEHLD--- 155
Query: 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN 276
L KI+ + L + + L N
Sbjct: 156 -----------------LSSNKIQ--SIYCTDLRV---------LHQMPLLNLSLDLSLN 187
Query: 277 DGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD-CSEILHIVGSVRRVR 335
+ +++ L L + L L V G++ +
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 336 CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR--KLKYLFSFSMAKNL 393
L L++ L + Y F+ L ++ S ++ + FS
Sbjct: 248 KSALEGLCNLTIEEF-RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306
Query: 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELEL------ 447
L + + K P ++ + N + +V P LE L+L
Sbjct: 307 QHL------ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360
Query: 448 ---------VSLTNIKKLW------SDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNS 492
T++K L + L + LK + +S+ S
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLS 419
Query: 493 LGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIH-- 550
L L +L+I + N F L L +
Sbjct: 420 LRNLIYLDISHTH-TRVAFNGI-------FNGLSSLEVLKMA---------------GNS 456
Query: 551 -TEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNL--- 606
E +F L +L L +S+ +L ++ A S S L+ L ++ N L
Sbjct: 457 FQENFLPDIFT---ELRNLTFLDLSQ-CQLEQL--SPTAFNSLSSLQVLNMAS-NQLKSV 509
Query: 607 -LNIFPPLVRL 616
IF L L
Sbjct: 510 PDGIFDRLTSL 520
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 10/149 (6%)
Query: 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
SL I+ + + Q L Q ++ LK L F + S
Sbjct: 288 SLVSVTIERVKDFSYNFGWQH--LELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFS 342
Query: 103 SLGRLINLQTLCLDWCELADIA----AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
+ L +L+ L L L+ + L+ L L+++ + + L +L+ L
Sbjct: 343 EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
D + ++ +V L L L + +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 9/173 (5%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--QFPGIGSSSLPSSLGR 106
IQ L L L + + ++ LK L I S LP
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 107 LINLQTLCLDWCELADIA--AIGQLKKLEI----LSLAYSNINQLPVEIGQLTRLQLLDL 160
L NL+ L L ++ I + L ++ + L L+ + +N + + RL L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 161 SNCWWLEVIAPNVISKLSQLEELY-MGNGFSGWEKVEGGSNASLVELERLTEL 212
N + + I L+ LE + F +E ++L L LT
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 80 FFEGMEGLKVLQFPGIGSSSL----PSSLGRLINLQTLCLDWCELADI---AAIGQLKKL 132
F + L L I + L +L+ L + + +L+ L
Sbjct: 416 VFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 133 EILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L L+ + QL L+ LQ+L++++ L+ + + +L+ L+++++
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 3e-11
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 25/180 (13%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
I + DI+ + PN+ L GN +++D ++ L L L
Sbjct: 48 IIANNSDIKSVQGIQYLPNVTKLFLN--GN---KLTDIKPLTNLKNLGWLFLDENKIKDL 102
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
SSL L L++L L+ ++DI + L +LE L L + I + V + +LT+L L L
Sbjct: 103 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 160
Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEIE 218
+ + I P ++ L++L+ LY+ N + L L L L LE+
Sbjct: 161 EDN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLELF 205
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 7e-09
Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 16/129 (12%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
+ L ++ + + ++ + I L + L L + + + + L L L L
Sbjct: 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLD 95
Query: 162 NCWWLEVIAPNVISKLSQLEELYMGN-------GFSGWEKVEG---GSN--ASLVELERL 209
++ ++ + L +L+ L + + G ++E G+N + L RL
Sbjct: 96 EN-KIKDLSS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL 152
Query: 210 TELTTLEIE 218
T+L TL +E
Sbjct: 153 TKLDTLSLE 161
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 14/139 (10%)
Query: 47 RDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLG 105
DI L P L+ LY N +++D + L L S + L
Sbjct: 122 SDINGLV---HLPQLES--LYLGNN---KITDITVLSRLTKLDTLSLEDNQISDI-VPLA 172
Query: 106 RLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI-NQLPVEIGQLTRLQLLDLSNCW 164
L LQ L L ++D+ A+ LK L++L L N+ L + ++
Sbjct: 173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD-- 230
Query: 165 WLEVIAPNVISKLSQLEEL 183
++ P +IS E+
Sbjct: 231 -GSLVTPEIISDDGDYEKP 248
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-11
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 8/140 (5%)
Query: 75 QVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIG---QLKK 131
G LK L G ++ S+ L L+ L L ++ L+
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 132 LEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGF 189
L L +++++ I L+ L++L ++ + E P++ ++L L L +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 190 SGWEKVEGGSNASLVELERL 209
++ + SL L+ L
Sbjct: 188 E---QLSPTAFNSLSSLQVL 204
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCE 119
L L NG + +S +F G+E L+ L F + S S L NL L +
Sbjct: 79 SLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 120 LADI--AAIGQLKKLEILSLAYSN-INQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVIS 175
L LE+L +A ++ +I +L L LDLS C LE ++P +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN 196
Query: 176 KLSQLEELYMGN 187
LS L+ L M +
Sbjct: 197 SLSSLQVLNMSH 208
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQ----LKKLEILSLAYSNINQLPVEIGQLTRLQ 156
+L L L L L+ Q L+ L L+++ + + L +L+
Sbjct: 45 HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104
Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
LD + ++ +V L L L + +
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 4/142 (2%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLGR 106
+ +P +L L+ N + + F + L+ L + S + +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWW 165
L NL+ L L C L +I + L KL+ L L+ ++++ + L LQ L +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-Q 242
Query: 166 LEVIAPNVISKLSQLEELYMGN 187
++VI N L L E+ + +
Sbjct: 243 IQVIERNAFDNLQSLVEINLAH 264
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 7/154 (4%)
Query: 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS 97
+ ++++E+P+ + N +L L N + + F+ + L++LQ
Sbjct: 44 QFSKVICVRKNLREVPDGIS-TNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 98 SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
++ + L NL TL L L I A L KL+ L L + I +P ++
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L+ LDL L I+ LS L L +
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 6e-11
Identities = 108/671 (16%), Positives = 202/671 (30%), Gaps = 210/671 (31%)
Query: 3 DVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQ 62
D++ V + F+ +V D+ K + + D I I L RL
Sbjct: 20 DILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTL--RL------ 67
Query: 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQ--FPGIGSSSLPSSLGRLINLQTLCLDWCEL 120
+ L ++ ++ F E VL+ + + S ++T +
Sbjct: 68 FWTLLSKQE---EMVQKFVEE-----VLRINYKFLMSP-----------IKTEQRQ-PSM 107
Query: 121 ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ--------LLDLSNCWWL------ 166
I Q +L N NQ ++RLQ LL+L +
Sbjct: 108 MTRMYIEQRDRLY-------NDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 167 ----EVIAPNVISKLSQLEELYMGNG-FSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221
+A +V + M F W + N+ LE L +L
Sbjct: 160 GSGKTWVALDVCLSYKVQCK--MDFKIF--WLNL-KNCNSPETVLEMLQKLLY------- 207
Query: 222 AEILPPDFVSVE--LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGT 279
+ P++ S K+RI +++E RL+ K +
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHS----------IQAELRRLLKSKPYEN---------- 245
Query: 280 KMLLQRTEDLWLETLEGVQS--VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE 337
LL L VQ+ + + K LL T ++ + +
Sbjct: 246 -CLL---------VLLNVQNAKAWNAFN-----LSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 338 V------FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK 391
+ E SL L L+ L + +N R ++ + + S+
Sbjct: 291 LDHHSMTLTPDEVKSL-LLKYLDCRP-QDLPREVLTTNPRRLS---------IIAESIRD 339
Query: 392 NLLRLQKVKVEDCDDLKMIIGPDME--KPPTTQGFIE---INAEDDPVHQVTFPRL---- 442
L K +CD L II + +P + + + + + +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 443 --EELELV-------SLTNIKKLWSDQFQGIYCCQNLTKVTV---WSCHRL--------- 481
++ +V SL ++K + I KV + ++ HR
Sbjct: 400 IKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 482 -------------KYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKL 528
+Y +S+ +G HL +N E +F +
Sbjct: 458 TFDSDDLIPPYLDQYFYSH-----IG--HHL--KNIEHPE------------RMTLFRMV 496
Query: 529 HYLSLHWLP-KL----SSFASPEDVIHTEMQ----PQSLFDEKVRLPSLEVLHISEADKL 579
+L +L K+ +++ + +++T Q + D P E L + D L
Sbjct: 497 -FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNAILDFL 552
Query: 580 RKIWHHQLASK 590
KI + + SK
Sbjct: 553 PKIEENLICSK 563
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 13/208 (6%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGR 106
I + + +Y N + D ++ L I + +
Sbjct: 111 ISRVSCSR-GQGKKN--IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
L+ L L + + D+ KL+ L L+ + + + E + + L N L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226
Query: 167 EVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEIL 225
+I + LE + GNGF G + +R+ + ++ +
Sbjct: 227 VLI-EKALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280
Query: 226 PPDFVSVELQRYKIRIGDGPEDEFDPLL 253
V D P D L+
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLI 308
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
Query: 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
+ +++ L+ + L GN Q+S L++L
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL- 74
Query: 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
L L L+TL L+ + + + +E L A +NI+++ GQ + + L+N
Sbjct: 75 DLESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLAN 129
Query: 163 CWWLEVIAPNVISKLSQLEELYMGN 187
+ ++ S+++ L +
Sbjct: 130 N-KITMLRDLDEGCRSRVQYLDLKL 153
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 36/240 (15%)
Query: 55 RLQCPNLQLF------LLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRL 107
C L+ F + +++ E + + LP+ RL
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307
Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
I L+ K+ +LS S +L E R + +D
Sbjct: 308 IALK-----------------RKEHALLSGQGSETERLECERENQARQREIDALKE-QYR 349
Query: 168 VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE--RLTELTTLEIEVPDAEIL 225
+ V + L ++ + EL+ + +E++ E
Sbjct: 350 TVIDQVTLRKQAKITLEQKK--KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407
Query: 226 PPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQR 285
P + ++RY E + V++ A R + K+ + +EN K L
Sbjct: 408 PLQLLRAIVKRY-------EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%)
Query: 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLGRLINLQTLCLD 116
L+ L+ N + + F + L L + + + L NL+ L L
Sbjct: 147 SKLRE--LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204
Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVIS 175
C + D+ + L LE L ++ ++ ++ L+ L+ L + N + +I N
Sbjct: 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFD 263
Query: 176 KLSQLEELYMGN 187
L+ L EL + +
Sbjct: 264 GLASLVELNLAH 275
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 19/185 (10%)
Query: 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS 97
+ R + E+P+ + N + L N + F + L+VLQ
Sbjct: 55 QFSKVVCTRRGLSEVPQGIP-SNTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 98 SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
+ + L +L TL L L I A L KL L L + I +P ++
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
L LDL LE I+ L L+ L + + L L L
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-----------DMPNLTPLVGL 220
Query: 213 TTLEI 217
LE+
Sbjct: 221 EELEM 225
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
I + DI+ + PN+ L+ GN +++D ++ L L L
Sbjct: 51 IIANNSDIKSVQGIQYLPNVTK--LFLNGN---KLTDIKPLANLKNLGWLFLDENKVKDL 105
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
SSL L L++L L+ ++DI + L +LE L L + I + V + +LT+L L L
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 163
Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEIE 218
+ + I P ++ L++L+ LY+ N + L L L L LE+
Sbjct: 164 EDN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLELF 208
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 18/118 (15%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
S L + D +L ++ + S+I + I L + L L+
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 76
Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEI 217
L I P ++ L L L++ N L L+ L +L +L +
Sbjct: 77 GN-KLTDIKP--LANLKNLGWLFLDE------------NKVKDLSSLKDLKKLKSLSL 119
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 27/194 (13%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS---S 98
+ L + ++ NL L+ + N +V D ++ LK L+ + S
Sbjct: 73 LFLNGNKLTDIKPLANLKNLGW--LFLDEN---KVKD--LSSLKDLKKLKSLSLEHNGIS 125
Query: 99 SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
+ + L L L++L L ++ DI + +L KL+ LSL + I+ + + LT+LQ L
Sbjct: 126 DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNL 183
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL-EI 217
LS + + ++ L L+ L + + + + L +
Sbjct: 184 YLSKNH-ISDLRA--LAGLKNLDVLELFS-----------QECLNKPINHQSNLVVPNTV 229
Query: 218 EVPDAEILPPDFVS 231
+ D ++ P+ +S
Sbjct: 230 KNTDGSLVTPEIIS 243
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
I ++ + P L+ LY N +++D + L L S + L L
Sbjct: 124 ISDINGLVHLPQLES--LYLGNN---KITDITVLSRLTKLDTLSLEDNQISDI-VPLAGL 177
Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166
LQ L L ++D+ A+ LK L++L L P+ L + ++
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--- 234
Query: 167 EVIAPNVISKLSQLEEL 183
++ P +IS E+
Sbjct: 235 SLVTPEIISDDGDYEKP 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 18/158 (11%)
Query: 73 PMQVSDHF-FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKK 131
P ++ F + + + + L + TL + I + L
Sbjct: 6 PTAINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLNN 64
Query: 132 LEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-NGFS 190
L L L + I L + LT++ L+LS L+ ++ I+ L ++ L + +
Sbjct: 65 LIGLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQIT 120
Query: 191 GWEKVEG---------GSNA--SLVELERLTELTTLEI 217
+ G N ++ L LT L L I
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
S L L NLQ L + +++D+ + L KL L + I+ + + L L + L
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLK 203
Query: 162 NCWWLEVIAPNVISKLSQLEELYMGN 187
N + ++P ++ S L + + N
Sbjct: 204 NN-QISDVSP--LANTSNLFIVTLTN 226
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE--GMEGLKVLQFPGIGSSSLPSSLGR 106
+++ P+L L N + G L+ L G+ + ++
Sbjct: 340 GSISFKKVALPSLSYLDLS--RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397
Query: 107 LINLQTLCLDWCELADIA---AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN 162
L LQ L L + A L+KL L ++Y+N I LT L L ++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 163 CWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
+ + NV + + L L + + G +L L+ L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ---ISWGVFDTLHRLQLL 502
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 79/541 (14%), Positives = 150/541 (27%), Gaps = 96/541 (17%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLT 153
S LQ L L CE+ I A L L L L + I LT
Sbjct: 45 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT-- 210
L+ L L + I +L L++L + N + ++L L +
Sbjct: 105 SLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCK--LPAYFSNLTNLVHVDLS 161
Query: 211 --ELTTLEIEV-PDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267
+ T+ + P +S+++ I + + L+G
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-------FIQDQAFQGIKLHELTLRGN 214
Query: 268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHI 327
S + + L L E E+ + L + + +
Sbjct: 215 FNSSNIMKTCLQN--LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 328 VGSVRRVRCEVFPLLEALSL-----------MFLTNLETICYSQLR----EDQSFSNLRI 372
S V+ + A+SL +++ + + L+
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332
Query: 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINA-ED 431
+ + + F +L L DL ++
Sbjct: 333 LTLTMNK-GSISFKKVALPSLSYL---------DL---------------SRNALSFSGC 367
Query: 432 DPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVN 491
+ L L+L S + S F G + L + LK + +S
Sbjct: 368 CSYSDLGTNSLRHLDL-SFNGAIIM-SANFMG---LEELQHLDF-QHSTLKRVTEFSAFL 421
Query: 492 SLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHT 551
SL +L +L+I + + F L+ L +
Sbjct: 422 SLEKLLYLDISYTN-TKIDFDGI-------FLGLTSLNTLKMA------------GNSFK 461
Query: 552 EMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFP 611
+ ++F +L L +S+ +L +I + +L+ L +S +N L
Sbjct: 462 DNTLSNVFA---NTTNLTFLDLSKC-QLEQI--SWGVFDTLHRLQLLNMS--HNNLLFLD 513
Query: 612 P 612
Sbjct: 514 S 514
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 54 ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQ 111
L +L+ L NG + F G+E L+ L F + + S+ L L
Sbjct: 371 SDLGTNSLRHLDL--SFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 112 TLCLDWCELADI--AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLE 167
L + + L L L +A ++ L T L LDLS C LE
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LE 486
Query: 168 VIAPNVISKLSQLEELYMGN 187
I+ V L +L+ L M +
Sbjct: 487 QISWGVFDTLHRLQLLNMSH 506
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 13/176 (7%)
Query: 49 IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSL 104
IQ +L+ + + + LK L I S LP+
Sbjct: 92 IQSFSPGSFSGLTSLENLVAV--ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149
Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKL----EILSLAYSNINQLPVEIGQLTRLQLL 158
L NL + L + + I + L++ L ++ + I+ + + Q +L L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELT 213
L + I + L+ L + F +E + + L +T
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTR 154
S +P + + + + L + L + + +L+ L L+ I + + L
Sbjct: 24 SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
L L L+ ++ +P S L+ LE L + +E L+ L++L
Sbjct: 82 LSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLAS---LESFPIGQLITLKKL 133
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 17/169 (10%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
I+ L + + Q L Q+ + LK L S + L
Sbjct: 297 IKYLEDVPKHFKWQS--LSIIRC---QLKQFPTLDLPFLKSLTLTMNKGSISFKKVA-LP 350
Query: 109 NLQTLCLDWCELADIAAI----GQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164
+L L L L+ L L L+++ + L LQ LD +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410
Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
V + L +L L + + + L L L
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKID------FDGIFLGLTSLNTL 453
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 6/131 (4%)
Query: 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
++ + F + + + G+ L + + Q+L + C
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC 317
Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS--K 176
+L + L L+ L+L + + ++ L L LDLS L S
Sbjct: 318 QLKQFPTLD-LPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRN-ALSFSGCCSYSDLG 374
Query: 177 LSQLEELYMGN 187
+ L L +
Sbjct: 375 TNSLRHLDLSF 385
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 8/115 (6%)
Query: 76 VSDHFFEGMEGLKVLQFPGIG---SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKL 132
EG+ + + +F S L N+ + L + + + + K
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309
Query: 133 EILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+ LS+ + Q P L L+ L L+ L L L +
Sbjct: 310 QSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSR 359
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 30/144 (20%)
Query: 49 IQELPERLQCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLG 105
++ + E +L+ L L D F G+ L L+ G ++L +
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470
Query: 106 RLINLQTLCLDWCELADI--------------------------AAIGQLKKLEILSLAY 139
NL L L C+L I + QL L L ++
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 140 SNINQLPVEI-GQLTRLQLLDLSN 162
+ I + L +L+N
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTN 554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 20/156 (12%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPS- 102
+ LP + +L L N ++ D F+ L+ L + + S +PS
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
Query: 103 -----------SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
+L I ++ L + + +L IL L ++N+ +
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAW-LLN 246
Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L +DLS LE I + K+ +LE LY+ N
Sbjct: 247 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 281
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 26/190 (13%), Positives = 65/190 (34%), Gaps = 17/190 (8%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
I + +D+ E + N ++ + + + ++ + +++L + +
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKI--VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85
Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
+ + +Q L + + + + + L +L L ++++ LP I +L
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELER 208
L +SN LE I + + L+ L + + N L L
Sbjct: 146 LSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLAI 203
Query: 209 LTELTTLEIE 218
+ L+
Sbjct: 204 PIAVEELDAS 213
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 13/148 (8%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
++ + + L + + L N V L +L+ +
Sbjct: 191 ANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA 242
Query: 102 SSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
L L + L + EL I ++++LE L ++ + + L + + L++LD
Sbjct: 243 W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301
Query: 160 LSNCWWLEVIAPNVISKLSQLEELYMGN 187
LS+ L + + +LE LY+ +
Sbjct: 302 LSHNH-LLHV-ERNQPQFDRLENLYLDH 327
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 101 PSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
++ L+ L + L + + L++L L+++++ + Q RL+ L
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324
Query: 160 LSNCWWLEVIAPNVISKLSQL 180
L + + + + L L
Sbjct: 325 LDHN-SIVTLKLSTHHTLKNL 344
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 7e-10
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
++L L L LD EL + G L L L L+++ + LP+ L L +LD+
Sbjct: 48 LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107
Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGN 187
S L + + L +L+ELY+
Sbjct: 108 SFN-RLTSLPLGALRGLGELQELYLKG 133
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 6/142 (4%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
+ P +L L + ++ + L L SLP L
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100
Query: 109 NLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWW 165
L L + + L + A+ L +L+ L L + + LP + +L+ L L+N
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-N 159
Query: 166 LEVIAPNVISKLSQLEELYMGN 187
L + +++ L L+ L +
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCELA-DI-AAIGQLKKLEILSLAYSNIN-QLPVEIGQLT 153
+P ++ +L L L + ++ I + Q+K L L +Y+ ++ LP I L
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 154 RLQLLDLSN 162
L +
Sbjct: 150 NLVGITFDG 158
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 100 LPSSLGRLINLQTLCLDWCEL---ADI-AAIGQLKKLEILSLAYSNINQL----PVEIGQ 151
L + + + L L L I +++ L L L + IN L P I +
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99
Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSG 191
LT+L L +++ I P+ +S++ L L N SG
Sbjct: 100 LTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSG 139
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTR 154
G N Q + L LA D+ +G K L L L + I LP + QL
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 155 LQLLDLSN 162
L L++S
Sbjct: 270 LHSLNVSF 277
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 44/128 (34%)
Query: 99 SLPSSLGRLINLQTLCLDWCELA-DI-AAIGQLKKL-EILSLAYSNI------------- 142
+LP S+ L NL + D ++ I + G KL ++++ + +
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 143 -------NQL----PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-------KLSQLEELY 184
N L V G Q + L+ N ++ L L
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAK---------NSLAFDLGKVGLSKNLNGLD 250
Query: 185 M-GNGFSG 191
+ N G
Sbjct: 251 LRNNRIYG 258
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 12/174 (6%)
Query: 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP- 101
R +P L ++ L N + L+VL +++
Sbjct: 11 DGRSRSFTSIPSGL-TAAMKSLDLS--FNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 102 SSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQL 157
+ L +L+ L L L+ + + G L L+ L+L + L V LT LQ
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
L + N I + L+ L EL + + S S+ ++ LT
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---NYQSQSLKSIRDIHHLT 178
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSS 99
+ +P + + ++ + E + V F + ++ L+ L +
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 100 LPSS--LGRLINLQTLCLDWCELADIAAIG----QLKKLEILSLAYSNINQLPVEIGQLT 153
L +S G +LQTL L L + G LK L L ++ + + +P
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+++ L+LS+ + V+ + LE L + N
Sbjct: 411 KMRFLNLSST-GIRVVKTCI---PQTLEVLDVSN 440
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 57 QCPNLQLFLLYTEGNGP--MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114
P+LQ +L N MQ + ++ L L +P S ++ L
Sbjct: 359 AWPSLQTLVLS--QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416
Query: 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174
L + + + LE+L ++ +N++ + L RLQ L +S L+ + +
Sbjct: 417 LSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRN-KLKTLPDASL 471
Query: 175 SKLSQLEELYMGN 187
L + +
Sbjct: 472 --FPVLLVMKISR 482
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 2e-09
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
+++ L L +L + + QL + L L+++ + LP + L L++L
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493
Query: 161 SNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERLTELTTLEIE 218
S+ LE + ++ L +L+EL + N ++ L L L ++
Sbjct: 494 SDN-ALENVDG--VANLPRLQELLLCNNRLQQSAAIQ--------PLVSCPRLVLLNLQ 541
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 8e-08
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRL 155
+LP +L L L+ L L ++ + L +L+ L L + + Q + RL
Sbjct: 476 RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 156 QLLDLSN 162
LL+L
Sbjct: 536 VLLNLQG 542
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 20/156 (12%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPS- 102
+ LP + +L L N ++ D F+ L+ L + + S +PS
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
Query: 103 -----------SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
+L I ++ L + + +L IL L ++N+ +
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAW-LLN 252
Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L +DLS LE I + K+ +LE LY+ N
Sbjct: 253 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 287
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 7/150 (4%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
I + +D+ E + N ++ + ++ + +++L + +
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFK--NSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91
Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
+ + +Q L + + + + + L +L L ++++ LP I +L
Sbjct: 92 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L +SN LE I + + L+ L + +
Sbjct: 152 LSMSNN-NLERIEDDTFQATTSLQNLQLSS 180
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 13/148 (8%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
++ + + L + + L N V L +L+ +
Sbjct: 197 ANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA 248
Query: 102 SSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
L L + L + EL I ++++LE L ++ + + L + + L++LD
Sbjct: 249 W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307
Query: 160 LSNCWWLEVIAPNVISKLSQLEELYMGN 187
LS+ L + + +LE LY+ +
Sbjct: 308 LSHNH-LLHV-ERNQPQFDRLENLYLDH 333
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 101 PSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
++ L+ L + L + + L++L L+++++ + Q RL+ L
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330
Query: 160 LSNCWWLEVIAPNVISKLSQL 180
L + + + + L L
Sbjct: 331 LDHN-SIVTLKLSTHHTLKNL 350
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRL 107
++ +P + L L N + + D+ F+ + LK L+ + + L
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 108 INLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCW 164
+L+ L L+ C L I A+ L L +L L + NIN + +L RL++L++S+
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERL 209
+L+ + PN + L+ L L + + V + LV L L
Sbjct: 212 YLDTMTPNCLYGLN-LTSLSITH--CNLTAVPYLAVRHLVYLRFL 253
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 13/177 (7%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRL 107
+ + R L L E + + GL VL+ + +++ S RL
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 108 INLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164
L+ L + D L LS+ + N+ +P + L L+ L+LS
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT----ELTTLE 216
+ I +++ +L +L+E+ + G + VE + L L L +LTTLE
Sbjct: 260 -ISTIEGSMLHELLRLQEIQLVGGQLA---VVEPYAFRGLNYLRVLNVSGNQLTTLE 312
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
+L+ L L+ ++ + A L L L L + + +P+ + L+ L
Sbjct: 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
LD+S + ++ + L L+ L + N + + + L LE+LT
Sbjct: 109 LDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV---YISHRAFSGLNSLEQLT 158
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 5/127 (3%)
Query: 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
+ H + L L L V + L+ L S++
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 103 -SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLL 158
L L+ LQ + L +LA + A L L +L+++ + + L + + L+ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
Query: 159 DLS-NCW 164
L N
Sbjct: 326 ILDSNPL 332
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 6e-09
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 90 LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI 149
P I + ++L L + L L + I+++ ++ L ILSL + I ++
Sbjct: 32 GMIPPI--EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD 89
Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLS------QLEELYMG-NGFSGWEKVEGGSNAS 202
L+ L +S N I+ LS L LYM N + W +++
Sbjct: 90 AVADTLEELWISY---------NQIASLSGIEKLVNLRVLYMSNNKITNWGEID-----K 135
Query: 203 LVELERLTELT 213
L L++L +L
Sbjct: 136 LAALDKLEDLL 146
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 6/150 (4%)
Query: 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEGLKVLQFPGIGSSSLP 101
L + + L L N ++ V F G+ L L G L
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
L LQ L L L + L L L L + I+ +P L L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
L L + + P+ L +L LY+
Sbjct: 182 LLLHQNR-VAHVHPHAFRDLGRLMTLYLFA 210
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTR 154
++P + Q + L ++ + A+ + L IL L + + ++ L
Sbjct: 24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
L+ LDLS+ L + P L +L L++ G ++ G L L+ L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYL 134
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 98 SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
L S S LQ L L CE+ I A L L L L + I L + L+
Sbjct: 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100
Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
LQ L L + I L L+EL + +
Sbjct: 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAH 133
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 98 SSLPS--SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQL 152
S L + + RL NL +L L L I+ A + L L L+ ++++ L + L
Sbjct: 52 SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111
Query: 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTE 211
L++L L N + V+ N ++QL++LY+ N S + +L +L
Sbjct: 112 QALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS---RFPVELIKDGNKLPKLML 167
Query: 212 LT 213
L
Sbjct: 168 LD 169
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 9/144 (6%)
Query: 49 IQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGR 106
+ L L L L N +S F + L+ L +L
Sbjct: 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110
Query: 107 LINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI----GQLTRLQLLDL 160
L L+ L L + + A + +L+ L L+ + I++ PVE+ +L +L LLDL
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170
Query: 161 SNCWWLEVIAPNVISKLSQLEELY 184
S+ L+ + + KL +
Sbjct: 171 SSN-KLKKLPLTDLQKLPAWVKNG 193
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
+ + NL+ L L +++D++ + L KLE LS+ + + L L L L
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLD 114
Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNA--SLVELERLTELTTLEIE 218
N E+ + + L LE L + N N S+V L L++L L++
Sbjct: 115 NN---ELRDTDSLIHLKNLEILSIRN------------NKLKSIVMLGFLSKLEVLDLH 158
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 7/126 (5%)
Query: 60 NLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
+ L L+ + N ++ D ++ L++L S+ LG L L+ L L
Sbjct: 105 SACLSRLFLDNN---ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN 160
Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
E+ + + +LKK+ + L PV+ L + + I+P IS
Sbjct: 161 EITNTGGLTRLKKVNWIDLTGQKCVNEPVKY--QPELYITNTVKDPDGRWISPYYISNGG 218
Query: 179 QLEELY 184
+
Sbjct: 219 SYVDGC 224
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 66 LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELADI- 123
L N +S+ + L+ L G +++ S L +L+ L L + L+++
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 124 -AAIGQLKKLEILSLAYSNINQLPVEI--GQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180
+ L L L+L + L LT+LQ+L + N I + L+ L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176
Query: 181 EELYM-GNGFSGWEKVEGGSNASLVELERLT 210
EEL + + E S S+ + L
Sbjct: 177 EELEIDASDLQ---SYEPKSLKSIQNVSHLI 204
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 44 LPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103
L + + LPE P+L+ L N ++ + LK L +L
Sbjct: 78 LNNLGLSSLPELP--PHLES--LVASCNSLTELPELPQS----LKSLLVDNNNLKALSDL 129
Query: 104 LGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC 163
L+ L + +L + + L+I+ + +++ +LP L + +
Sbjct: 130 PP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ-- 184
Query: 164 WWLEVIAPNVISKLSQLEELYMGN 187
LE + + L L +Y N
Sbjct: 185 --LEELPE--LQNLPFLTAIYADN 204
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
LP +L+++ L ++ + L L + + + LP L L +
Sbjct: 208 KKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264
Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELY 184
D L + P + L+ L+
Sbjct: 265 RDNY----LTDL-PELPQSLTFLDVSE 286
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
++ LP+ P+L+ L N + + + L L S L
Sbjct: 249 LKTLPDLP--PSLEA--LNVRDNYLTDLPELP----QSLTFLDVSENIFSGLSELPP--- 297
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
NL L E+ + LE L+++ + + +LP +L R L S L
Sbjct: 298 NLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELPALPPRLER---LIASFN-HLAE 351
Query: 169 IAPNVISKLSQL 180
+ P + L QL
Sbjct: 352 V-PELPQNLKQL 362
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 20/102 (19%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADI--AAIGQL-------------KKLEILSLAYSNI 142
+ +P + + W E G+ ++ L L +
Sbjct: 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83
Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184
+ LP L L S L + P + L L
Sbjct: 84 SSLPELPPHLESLVASCNS----LTEL-PELPQSLKSLLVDN 120
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
L +L L L +++ I A L+KL+ L ++ +++ ++P + L L
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVEL 128
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+ + + + V S L + + MG
Sbjct: 129 RIHDNR-IRKVPKGVFSGLRNMNCIEMGG 156
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 13/159 (8%)
Query: 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118
L+L L + E + L L I ++ L R L L L
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPETLNELH-LDHNKI--QAIELEDLLRYSKLYRLGLGHN 227
Query: 119 ELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS- 175
++ I ++ L L L L + ++++P + L LQ++ L + + N
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCP 286
Query: 176 -----KLSQLEELYMGNGFSGWEKVEGGSNASLVELERL 209
K + + + N + +V+ + + + +
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 50 QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLI 108
++LPE L +L L + N + L L + + SL L
Sbjct: 189 KDLPETLN----ELHL---DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241
Query: 109 NLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEI-------GQLTRLQLLDL 160
L+ L LD +L+ + A + LK L+++ L +NI ++ V + + L
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Query: 161 S-NCWWLEVIAPNVISKLSQLEELYMGN 187
N + P ++ + GN
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGN 329
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
++ S +L L +L + D+ I +L L L +NI L + Q T L
Sbjct: 31 QATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLT 88
Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE-RLTELTT 214
L + L + ++ L++L L N + K++ N L L LT
Sbjct: 89 YLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTE 141
Query: 215 LEIE 218
+++
Sbjct: 142 IDVS 145
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 13/131 (9%)
Query: 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116
L N +++ L L + + + L L
Sbjct: 104 PLTKLTYLNCD--TN---KLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH 156
Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISK 176
+ + +L L +++ I +L + Q L L+ + + +++
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD---LNQ 210
Query: 177 LSQLEELYMGN 187
QL L +
Sbjct: 211 NIQLTFLDCSS 221
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
L L + C + +L +L + I +L + Q +L L L+N
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNN 327
Query: 163 CWWLEVIAPNVISKLSQLEELYMGN 187
L + +S ++L+ L N
Sbjct: 328 T-ELTELD---VSHNTKLKSLSCVN 348
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQ 144
G VL G ++LP L ++ TL + L + A +L+ LE ++ + +
Sbjct: 41 GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTS 95
Query: 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYMGN 187
LPV L L + + L S L +L++
Sbjct: 96 LPVLPPGLLELSIFSNPL---------THLPALPSGLCKLWIFG 130
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 5e-06
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 8/138 (5%)
Query: 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYS 140
GLK L G +SLP L+ L + L + L L S+ +
Sbjct: 218 ALPSGLKELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLSL---SVYRN 271
Query: 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN 200
+ +LP + L+ ++L L + +++
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330
Query: 201 ASLVELERLTELTTLEIE 218
+ L L
Sbjct: 331 TRALHLAAADWLVPAREG 348
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 18/138 (13%)
Query: 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
+P ++ LP P L+ L GN + GL L + LP+
Sbjct: 67 VIPDNNLTSLPALP--PELRT--LEVSGNQLTSLPVLP----PGLLELSIFSNPLTHLPA 118
Query: 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
L L + +L + L+ LS++ + + LP +L +L +
Sbjct: 119 LPS---GLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQ- 172
Query: 163 CWWLEVIAPNVISKLSQL 180
L + P + S L +L
Sbjct: 173 ---LTSL-PMLPSGLQEL 186
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQLTRLQ 156
+S RL +LQ L ++ + L L IL L Y+ QL L L+
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106
Query: 157 LLDLSNCW-WLEVIAPNVISKLSQLEELYMGN 187
+L L+ C V++ N L+ LE L + +
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 54 ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME--GLKVLQFPGIGSSSLPSSL-GRLINL 110
+ L N + F+G+E G+K +L S+ +L
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301
Query: 111 QTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLE 167
+ L L E+ I A L L L+L+ + + + + L +L++LDLS +
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IR 360
Query: 168 VIAPNVISKLSQLEELYMGN 187
+ L L+EL +
Sbjct: 361 ALGDQSFLGLPNLKELALDT 380
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
S + L L+ L + + + + ++LE L L+++ + ++ L+ L
Sbjct: 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHL 95
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
DLS + + +SQL+ L +
Sbjct: 96 DLSFNAFDALPICKEFGNMSQLKFLGLST 124
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 18/109 (16%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 81 FEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA 138
M+ L+ L + +L +L + L D ++++L L
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429
Query: 139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+ I +P ++ +L LQ L++++ L+ + + +L+ L+++++
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 13/120 (10%)
Query: 76 VSDHFFEGMEGLKVLQFPGIGSSSLPSSLG---RLINLQTLCLDWCELADIAAIG---QL 129
+ L+ L L ++ +LQ L + ++ G
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398
Query: 130 KKLEILSLAYSNINQLPVEI-GQLTR-LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
K L L+++ N L I L +++LDL + ++ I P + KL L+EL + +
Sbjct: 399 KSLLSLNMSS---NILTDTIFRCLPPRIKVLDLHSN-KIKSI-PKQVVKLEALQELNVAS 453
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
L NL TL L +++ I+ A L KLE L L+ + + +LP LQ L
Sbjct: 69 DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQEL 126
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
+ + + +V + L+Q+ + +G
Sbjct: 127 RVHEN-EITKVRKSVFNGLNQMIVVELGT 154
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
+SL L NL L L + ++ + ++ L L L + + ++P + +Q++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268
Query: 159 DLS-NCWWLEVIAPNVI------SKLSQLEELYMGN 187
L N + I N +K + + + +
Sbjct: 269 YLHNNN--ISAIGSNDFCPPGYNTKKASYSGVSLFS 302
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 16/202 (7%)
Query: 49 IQELPERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEG-LKVLQFPGIGSSSLPSSLGR 106
I+ LP+ + +LQ LL + N + + + F G+ +L G + +S
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175
Query: 107 LINLQTLCL-DWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN 162
L L L D L ++ IL ++ + I+ LP L +L+ N
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235
Query: 163 CWWLEVIAPNVISKLSQLEELYMGN-----GFSGWEKVEGGSNASLVELERLTELTTLEI 217
L+ + + KL L E + F+ W + + + E+ +
Sbjct: 236 ---LKKLPT--LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQ 290
Query: 218 EVPDAEILPPDFVSVELQRYKI 239
L D S + + +
Sbjct: 291 ARGQRSSLAEDNESSYSRGFDM 312
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117
P L + + N + ++ F+ + L+ L G LP + L +
Sbjct: 79 PKLH-EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-- 135
Query: 118 CELADIAAI------GQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP 171
+ +I I G + IL L + I ++ T+L L+LS+ LE +
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195
Query: 172 NVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELERLTELTTLE 216
+V S L + G +K+ S +L +L L +L L
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALM 249
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 13/125 (10%)
Query: 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
++ L +L+ NG ++ + F G + ++ LP+
Sbjct: 143 TIERNSFVGLSFESV-------ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195
Query: 103 -SLGRLINLQTLCLDWCELADIAAIG--QLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
L + + + + G LKKL S N+ +LP + +L L
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT-LEKLVALMEAS 252
Query: 160 LSNCW 164
L+
Sbjct: 253 LTYPS 257
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 63/493 (12%), Positives = 132/493 (26%), Gaps = 103/493 (20%)
Query: 84 MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQ-LKKLEILSLAY- 139
L + G + + L+ + L + D + I + K ++L L+
Sbjct: 81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140
Query: 140 SNINQLPVE--IGQLTRLQLLDLSNCW-------WLEVIAPNVISKLSQLEELYMGNGFS 190
+ + L+ LDL WL + L L + S
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT----YTSLVSLNISCLAS 196
Query: 191 GWEKVEGGSNASLVEL-ERLTELTTLEIE--VPDAEILPPDFVSVELQRYKIRIGDGPED 247
S ++L L R L +L++ VP ++ + +L+
Sbjct: 197 EV------SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250
Query: 248 EFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT---EDLWLE----TLEGVQSV 300
+ S L+ + + L L + +
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309
Query: 301 VHELDDGEGFPRLKRLLVTDC---SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETIC 357
+ + P+L+RL V D + + + + L L +
Sbjct: 310 LCQC------PKLQRLWVLDYIEDAGLEVLAST--------CKDLRELRVFPSEPFVMEP 355
Query: 358 YSQLREDQSFSNLRIINVDSCRKLKYLFSF----------SMAKNLLRLQKVKVEDCDDL 407
L +Q ++ C KL+ + F ++A+N + + ++ +
Sbjct: 356 NVALT-EQGLVSV----SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410
Query: 408 KMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELEL---VSLTNIKKLWSDQFQGI 464
P GF I L L L ++ + +
Sbjct: 411 APDYLTLE---PLDIGFGAIVE--------HCKDLRRLSLSGLLTDKVFEYI-------G 452
Query: 465 YCCQNLTKVTVWSCHR----LKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRD 520
+ + ++V + ++ S L+ LEIR+C
Sbjct: 453 TYAKKMEMLSVAFAGDSDLGMHHVLS-----GCDSLRKLEIRDCPF-------GDKALLA 500
Query: 521 EFKVFPKLHYLSL 533
+ L +
Sbjct: 501 NASKLETMRSLWM 513
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 109 NLQTLCLDWCELADI--AAIGQLKKLEILSLAYSN-INQLPVEI-GQLTRLQLLDLSNCW 164
+ QTL L L I A L + + ++ + QL L+++ +++ N
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 165 WLEVIAPNVISKLSQLEELYMGN 187
L I P+ + +L L+ L + N
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFN 114
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 13/153 (8%)
Query: 47 RDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SL 104
+DIQ +P P+ Q L + H F + + + + L S S
Sbjct: 21 KDIQRIPSLP--PSTQT--LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76
Query: 105 GRLINLQTLCLDW-CELADIA--AIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLD 159
L + + + L I A+ +L L+ L + + + P ++ +L+
Sbjct: 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136
Query: 160 LSNCWWLEVIAPNVISKL-SQLEELYM-GNGFS 190
+++ ++ I N L ++ L + NGF+
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 7/114 (6%)
Query: 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAI------GQLKKLEI 134
+ + LK L G P L+ + + +I G +
Sbjct: 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160
Query: 135 LSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYMGN 187
L L + + T+L + L+ +L VI + + S L +
Sbjct: 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 89 VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL-PV 147
VL L L+ L L IA + +L KL+ L L+ + ++ V
Sbjct: 23 VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV 82
Query: 148 EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
+ L L+LS N I LS +E L
Sbjct: 83 LAEKCPNLTHLNLSG---------NKIKDLSTIEPL 109
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
+ L L+ L L + + + LE L ++++ + + + L+ L
Sbjct: 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHL 126
Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
DLS + + L++L L +
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-----GRLINLQTLCLD 116
+L L + NG + + L+ + +SL S ++ L L
Sbjct: 378 RLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS-NCWWLEVIAPNVIS 175
L K+++L L + I +P ++ L LQ L+++ N L+ + V
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ--LKSVPDGVFD 494
Query: 176 KLSQLEELYMGN 187
+L+ L+ +++ +
Sbjct: 495 RLTSLQYIWLHD 506
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 58/510 (11%), Positives = 130/510 (25%), Gaps = 130/510 (25%)
Query: 57 QCPNLQ-LFLLYTE--GNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113
L+ + +++ + +E LK+ + G + L S + ++TL
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 114 CLDWCELAD-----IAAIGQ-LKKLEILSLAYSNINQLPVE-----IGQLTRLQLLDLSN 162
++ ++ + + Q LE+L+ + ++ + L + + +
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229
Query: 163 CWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221
LE++ + L + + EK + L+ + E+ +
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289
Query: 222 AEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKM 281
++L + D I+K L+
Sbjct: 290 P--FAAQIRKLDLLYALLETEDH-------------------CTLIQKCPNLEV------ 322
Query: 282 LLQRTEDLWLE---TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV 338
L G++ + + +LKRL + ++ + V
Sbjct: 323 -------LETRNVIGDRGLEVL------AQYCKQLKRLRIERGADEQGMEDEEGLVSQR- 368
Query: 339 FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK 398
L AL+ Q L + V + S+ L L
Sbjct: 369 --GLIALA------------------QGCQELEYMAV-YVSDITNESLESIGTYLKNLCD 407
Query: 399 VKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWS 458
++ D + I ++ G + +L
Sbjct: 408 FRLVLLDREERITDLPLD-----NGVRSLLIG--------CKKLRRFAFYL--------- 445
Query: 459 DQFQGIYCCQNLTKVTVW----SCHRLKYLFS----------YSMVNSLGQLQHLEIRNC 504
LT + + ++++ LQ LE+R C
Sbjct: 446 -------RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
Query: 505 RSIEGVVNTTTLGGRDEFKVFPKLHYLSLH 534
+ P L YL +
Sbjct: 499 -------CFSERAIAAAVTKLPSLRYLWVQ 521
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 59/391 (15%), Positives = 115/391 (29%), Gaps = 69/391 (17%)
Query: 58 CPNLQLFLLYTEGNGPMQVSD----HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113
+L++ Y ++S L ++ L NL+
Sbjct: 191 NTSLEVLNFYMTEFA--KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248
Query: 114 CLDWCELAD-----IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
C + +KL L L+Y N++P+ +++ LDL
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308
Query: 169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTLEIEVPDAEILPP 227
+I K LE L N + L L + +L L IE E
Sbjct: 309 DHCTLIQKCPNLEVLETRNVI---------GDRGLEVLAQYCKQLKRLRIERGADEQGME 359
Query: 228 DFVSV--------------ELQR---YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270
D + EL+ Y I + + L RL++L +++
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419
Query: 271 SILQENDGTKMLLQ---RTEDLWLE------TLEGVQSVVHELDDGEGFPRLKRLLVTDC 321
+ L ++G + LL + T G+ + G+ P ++ +L+
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------GQYSPNVRWMLLGYV 473
Query: 322 SE----ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS 377
E ++ L+ L + E + + +LR + V
Sbjct: 474 GESDEGLMEFSRGCPN--------LQKLEMRGCCFSERAIAAAVT---KLPSLRYLWVQG 522
Query: 378 CRKLKYLFS-FSMAKNLLRLQKVKVEDCDDL 407
R MA+ ++ + ++
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIPSRRVPEV 553
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 90 LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPV 147
L +L L+ + ++ DI A + + L + + +
Sbjct: 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98
Query: 148 EI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
++ L L+ L L + + + + LS + L + +
Sbjct: 99 KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD 138
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 98 SSLPS-SLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQL 152
+P + L+ + L +++++A L+ L L L + I +LP + L
Sbjct: 45 KVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGL 103
Query: 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT 210
LQLL L+ + + + L L L + + + + G+ + L ++ +
Sbjct: 104 FSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK--LQTIAKGTFSPLRAIQTMH 158
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 102 SSLGRLINLQTLCLDWCELADIAAIG-QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
+ + + L L ++ I +G L + + + + + I +L L RL+ L +
Sbjct: 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLV 71
Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELT 213
+N + I + L L EL + N ++ L L+ LT L
Sbjct: 72 NNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLD-----PLASLKSLTYLC 119
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
+ + L G + + L + E+ + L++L+ L + +
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74
Query: 141 NINQLPVEIGQ-LTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
I ++ + Q L L L L+N N + +L L+ L
Sbjct: 75 RICRIGEGLDQALPDLTELILTN---------NSLVELGDLDPL 109
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 89 VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL-PV 147
VL + +NL+ L L L ++ + +L KL+ L L+ + I +
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM 89
Query: 148 EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
+L L L+LS N + +S LE L
Sbjct: 90 LAEKLPNLTHLNLSG---------NKLKDISTLEPL 116
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 27/149 (18%)
Query: 66 LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCLDWCELADIA 124
L + N + F + L++L +LP+ + L NL+TL + +L +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 125 A--IGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCW----------------- 164
QL L L L + + LP + LT+L L L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 165 -WLE-----VIAPNVISKLSQLEELYMGN 187
L + KL++L+ L + N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 90 LQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY-SNINQLP 146
L I S+L L + LQ L L+ L+D + + + L L+L+ S ++
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159
Query: 147 VE--IGQLTRLQLLDLSNCWWL--EVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS 202
++ + +RL L+LS C+ + + V + +L SG+ K +
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN----LSGYRK--NLQKSD 213
Query: 203 LVEL-ERLTELTTL 215
L L R L L
Sbjct: 214 LSTLVRRCPNLVHL 227
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 5/107 (4%)
Query: 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNI 142
G+ + P + +Q + L + + Q KL+ LSL +
Sbjct: 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130
Query: 143 NQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISK-LSQLEELYMGN 187
+ V + + + L L+LS C A + S+L+EL +
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 58 CPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG----IGSSSLPSSLGRLINLQT 112
C L L L + V E + L G + S L + + R NL
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226
Query: 113 LCLDWCEL---ADIAAIGQLKKLEILSLAY-SNI-NQLPVEIGQLTRLQLLDLSNC 163
L L + QL L+ LSL+ +I + +E+G++ L+ L +
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLE----ILSLAYSNINQLPVEIGQL 152
+ LP +L+ L + L + A + E + I +P I L
Sbjct: 173 TFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229
Query: 153 TRLQLLDLSN 162
+ L +
Sbjct: 230 DPTCTIILED 239
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-04
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 22/109 (20%)
Query: 84 MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNI 142
+ LQ + SSLP +L + L + L + L+ L+ +
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDN---RL 112
Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL----SQLEELYMGN 187
+ LP L L + + N ++ L + LE + N
Sbjct: 113 STLPELPASLKHLDVDN------------NQLTMLPELPALLEYINADN 149
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
+ + L ++ + + ++ + I L + L+L + ++ + + +LT L
Sbjct: 32 TDAVTQNE-LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA-LKELTNLTY 89
Query: 158 LDL-SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT----EL 212
L L N L+ + V KL+ L+EL + + + + G L L L +L
Sbjct: 90 LILTGNQ--LQSLPNGVFDKLTNLKELVLVE--NQLQSLPDGVFDKLTNLTYLNLAHNQL 145
Query: 213 TTLEIEVPD 221
+L V D
Sbjct: 146 QSLPKGVFD 154
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 66 LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCLDWCELADIA 124
L + G +SD F G+ L L +L + + L L TL L +LA +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 125 A--IGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE 181
L +L+ L L + + LP + +LT+L+ L L+ L+ I KL+ L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQ 158
Query: 182 ELYMGN 187
L +
Sbjct: 159 TLSLST 164
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 620 | |||
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.98 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.95 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.93 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.9 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.86 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.86 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.86 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.85 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.84 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.84 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.82 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.82 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.81 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.81 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.81 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.8 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.8 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.8 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.79 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.79 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.78 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.78 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.77 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.77 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.77 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.77 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.76 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.76 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.76 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.75 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.74 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.73 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.73 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.72 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.72 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.72 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.72 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.71 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.71 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.71 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.7 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.68 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.67 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.67 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.66 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.65 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.65 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.65 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.64 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.63 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.63 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.62 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.62 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.61 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.6 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.59 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.58 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.57 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.57 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.56 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.55 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.55 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.55 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.55 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.54 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.54 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.54 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.53 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.52 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.51 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.51 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.5 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.5 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.48 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.47 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.44 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.44 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.4 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.4 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.39 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.36 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.35 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.33 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.33 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.32 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.28 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.27 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.23 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.19 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.18 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.09 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.08 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.04 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.92 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.91 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.81 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.79 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.68 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.52 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.48 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.46 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.41 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.36 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.11 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.1 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.06 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.97 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.89 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.87 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.78 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.1 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.58 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.09 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.78 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 94.53 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 93.54 |
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=325.40 Aligned_cols=514 Identities=16% Similarity=0.126 Sum_probs=317.2
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 99 (620)
..+.+...+|. ++++++|+|++++|.+..++. ..++++|++|++++|.+ ..+++..|.++++|++|++++|.+..
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 18 CMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred ccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccc
Confidence 34455555564 567899999999999987765 33899999999999987 56655557899999999999999988
Q ss_pred C-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHH
Q 007039 100 L-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (620)
Q Consensus 100 l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l 174 (620)
+ |..|+++++|++|++++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|. +..+++..+
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 173 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDL 173 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTT
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhh
Confidence 7 7889999999999999999887 4 78999999999999999887 579999999999999999998 666665557
Q ss_pred hCCcCCc----EEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC--CCCCcccc-cCceEEEEEeCCCCCC
Q 007039 175 SKLSQLE----ELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE--ILPPDFVS-VELQRYKIRIGDGPED 247 (620)
Q Consensus 175 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~-~~L~~L~l~~~~~~~~ 247 (620)
+.+.+|+ .|++++|.+... ........+|+.|+++++... ..+..+.. +.++.+.+........
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l~~~---------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPIDFI---------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCCCEE---------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred hhhhccccccceeeccCCCccee---------CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 7776665 799999887622 122223347888999887643 22222233 6666666654332211
Q ss_pred CCCc-----cccccc--cccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEecc
Q 007039 248 EFDP-----LLVKSE--ASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD 320 (620)
Q Consensus 248 ~~~~-----~~~~~~--~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 320 (620)
.... .+.... .++.+.+.......... +. ...+++|+.|++.++... .+ +.+..+++|++|++++
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~-~~--~~~l~~L~~L~l~~~~~~-~l----~~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI-VK--FHCLANVSAMSLAGVSIK-YL----EDVPKHFKWQSLSIIR 316 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG-GS--CGGGTTCSEEEEESCCCC-CC----CCCCTTCCCSEEEEES
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccc-cc--cccCCCCCEEEecCccch-hh----hhccccccCCEEEccc
Confidence 1100 011111 34445553322211111 11 234567777777766532 22 1255778888888888
Q ss_pred CCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeec-chhHHHHhcccceE
Q 007039 321 CSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF-SFSMAKNLLRLQKV 399 (620)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L 399 (620)
|.- ..++ .. .+++|++|+++++....... ...+++|+.|++.++ .++... ....+..+++|++|
T Consensus 317 n~l-~~lp------~~-~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 317 CQL-KQFP------TL-DLPFLKSLTLTMNKGSISFK------KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCC-SSCC------CC-CCSSCCEEEEESCSSCEECC------CCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEE
T ss_pred ccC-cccc------cC-CCCccceeeccCCcCccchh------hccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEe
Confidence 853 3332 23 77888888888875544331 456788888888875 444442 12345778888888
Q ss_pred EEEecCCcccccccCCCCCCCCcc-ccccccC--CCC-ccccccCccceEecCCccccccccccCCccccccCCccEEEE
Q 007039 400 KVEDCDDLKMIIGPDMEKPPTTQG-FIEINAE--DDP-VHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTV 475 (620)
Q Consensus 400 ~l~~c~~l~~~~~~~~~~~~~l~~-~~~~~~~--~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i 475 (620)
++++|. +..++ ......+.++. .+..+.- ... ..+..+++|+.|++++|. +....... +..+++|++|++
T Consensus 382 ~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l 455 (606)
T 3vq2_A 382 DLSFNG-AIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGI---FLGLTSLNTLKM 455 (606)
T ss_dssp ECCSCS-EEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTT---TTTCTTCCEEEC
T ss_pred ECCCCc-cccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchhh---hcCCCCCCEEEC
Confidence 888765 33333 22222233322 1111110 001 123445566666666652 32221111 224566666666
Q ss_pred ecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCc
Q 007039 476 WSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQP 555 (620)
Q Consensus 476 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l 555 (620)
++| .++....+..+..+++|++|++++|. ++.+ .++.... +++|++|+++++. ++.+
T Consensus 456 ~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~------l~~L~~L~Ls~N~-l~~~------------- 512 (606)
T 3vq2_A 456 AGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQI-SWGVFDT------LHRLQLLNMSHNN-LLFL------------- 512 (606)
T ss_dssp TTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEE-CTTTTTT------CTTCCEEECCSSC-CSCE-------------
T ss_pred CCC-cCCCcchHHhhccCCCCCEEECCCCc-CCcc-Chhhhcc------cccCCEEECCCCc-CCCc-------------
Confidence 664 33331113445556666666666653 3221 1222222 5566666666552 2221
Q ss_pred cccccccccCCCccEEEeccccchhhhccccccCCccc-CccEEEeccCcCc
Q 007039 556 QSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFS-KLKKLKISGCNNL 606 (620)
Q Consensus 556 ~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~-sL~~L~i~~C~~l 606 (620)
.|..+..+++|++|++++| .++.+|.. +.+++ +|++|++.++|-.
T Consensus 513 --~~~~~~~l~~L~~L~l~~N-~l~~~p~~---~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 513 --DSSHYNQLYSLSTLDCSFN-RIETSKGI---LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp --EGGGTTTCTTCCEEECTTS-CCCCEESC---GGGSCTTCCEEECCSCCCC
T ss_pred --CHHHccCCCcCCEEECCCC-cCcccCHh---HhhhcccCcEEEccCCCcc
Confidence 2556677888888888888 47777665 34565 5888888776543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=320.98 Aligned_cols=512 Identities=12% Similarity=0.106 Sum_probs=346.4
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
++++.+++.+..+|.... +++++|++++|.. ..++...|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 578889999999887543 8999999999998 666665679999999999999999886 668999999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCcccc-ccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
.+.. |..|+++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+....
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEEC
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecC
Confidence 9887 688999999999999999999876 679999999999999998333 46765 999999999999999876322
Q ss_pred ccCCCCcchhhhcCCCC-CCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccc--cc
Q 007039 195 VEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK--KV 270 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~ 270 (620)
...+..+.+++. +.+|++++|....++..... .+|+.|++..+..........+..++.++.+.+.... ..
T Consensus 170 -----~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 170 -----VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp -----TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred -----hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 123445555554 66899999998888887766 7899999976543211111225566677776665411 11
Q ss_pred ccccchhHHHHHhc-----cccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 271 SILQENDGTKMLLQ-----RTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 271 ~~i~~~~~~~~~l~-----~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
..+..... ..+. .++.+.+........... .+..+++|+.|+++++.. ..++ ....+++|++|
T Consensus 245 ~~l~~~~~--~~~~~l~~l~l~~l~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~-~~l~------~l~~~~~L~~L 312 (606)
T 3vq2_A 245 RNLEIFEP--SIMEGLCDVTIDEFRLTYTNDFSDDIV---KFHCLANVSAMSLAGVSI-KYLE------DVPKHFKWQSL 312 (606)
T ss_dssp CCCSCCCG--GGGTTGGGSEEEEEEECCCTTCCGGGG---SCGGGTTCSEEEEESCCC-CCCC------CCCTTCCCSEE
T ss_pred CcccccCh--HHhhhhhhccHhheecccccccccccc---ccccCCCCCEEEecCccc-hhhh------hccccccCCEE
Confidence 11110000 0122 344444433333333222 255889999999999853 3232 55678899999
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccccc--ccCCCCCCCCcc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII--GPDMEKPPTTQG 423 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~l~~ 423 (620)
++.+|.- ..++ .. .+++|++|++.+|..+...+ +..+++|++|+++++. +.... .......+.++.
T Consensus 313 ~l~~n~l-~~lp-----~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 313 SIIRCQL-KQFP-----TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp EEESCCC-SSCC-----CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCE
T ss_pred EcccccC-cccc-----cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCc-cCCCcchhhhhccCCcccE
Confidence 9999874 5544 14 79999999999997766552 3589999999999875 33321 112223333333
Q ss_pred -ccccccCC-CCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEE
Q 007039 424 -FIEINAED-DPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEI 501 (620)
Q Consensus 424 -~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 501 (620)
.+..|.-. .+..+..+++|+.|+++++ .+..+.. ...+..+++|++|++++| .++.. .+..+..+++|++|++
T Consensus 381 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 381 LDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTE--FSAFLSLEKLLYLDISYT-NTKID-FDGIFLGLTSLNTLKM 455 (606)
T ss_dssp EECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTT--TTTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEEC
T ss_pred eECCCCccccchhhccCCCCCCeeECCCC-ccCCccC--hhhhhccccCCEEECcCC-CCCcc-chhhhcCCCCCCEEEC
Confidence 11111100 0123445677777777776 3333221 012235777777777775 34444 2345667777777777
Q ss_pred cccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhh
Q 007039 502 RNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRK 581 (620)
Q Consensus 502 ~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~ 581 (620)
++|.--.. ..+..... +++|++|+++++ .++.+ .|..+..+++|++|++++| .++.
T Consensus 456 ~~n~l~~~-~~~~~~~~------l~~L~~L~Ls~n-~l~~~---------------~~~~~~~l~~L~~L~Ls~N-~l~~ 511 (606)
T 3vq2_A 456 AGNSFKDN-TLSNVFAN------TTNLTFLDLSKC-QLEQI---------------SWGVFDTLHRLQLLNMSHN-NLLF 511 (606)
T ss_dssp TTCEEGGG-EECSCCTT------CTTCCEEECTTS-CCCEE---------------CTTTTTTCTTCCEEECCSS-CCSC
T ss_pred CCCcCCCc-chHHhhcc------CCCCCEEECCCC-cCCcc---------------ChhhhcccccCCEEECCCC-cCCC
Confidence 77643221 11333333 667777777776 23322 1345678899999999999 5776
Q ss_pred hccccccCCcccCccEEEeccCcCcccccchhhhhh
Q 007039 582 IWHHQLASKSFSKLKKLKISGCNNLLNIFPPLVRLL 617 (620)
Q Consensus 582 l~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~~~ 617 (620)
+.+.. +.++++|++|++++|. +++ +|..+..+
T Consensus 512 ~~~~~--~~~l~~L~~L~l~~N~-l~~-~p~~~~~l 543 (606)
T 3vq2_A 512 LDSSH--YNQLYSLSTLDCSFNR-IET-SKGILQHF 543 (606)
T ss_dssp EEGGG--TTTCTTCCEEECTTSC-CCC-EESCGGGS
T ss_pred cCHHH--ccCCCcCCEEECCCCc-Ccc-cCHhHhhh
Confidence 64444 4578999999999996 776 77665543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-35 Score=326.32 Aligned_cols=438 Identities=14% Similarity=0.027 Sum_probs=207.4
Q ss_pred cCCcEEEEccCCCCc-CCCC---cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhh---hhcc
Q 007039 36 QKDPIAISLPHRDIQ-ELPE---RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS---LGRL 107 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~-~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~---~~~l 107 (620)
.+++|+|++++|.+. .++. ..++++|++|++++|.. ...+|..++.++++|++|++++|.+... |.. ++++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE-ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc-CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 344555555555442 1222 12455555555555443 2233333224455555555555554432 222 4455
Q ss_pred cCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 108 ~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
++|++|++++|.+.....+..+++|++|++++|.+...+..++++++|++|++++|...+.+|.. +.++++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCC
Confidence 55555555555544422225555555666655555532223555666666666665522233332 55666666666655
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEE
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMML 264 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 264 (620)
|.+....+ .. ++++|++|++++|... .+|..+.. ++|+.|++..+.... .....+..+++|+.|++
T Consensus 257 n~l~~~~~---------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 257 NQFVGPIP---------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-AVPPFFGSCSLLESLAL 325 (768)
T ss_dssp SCCEESCC---------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-CCCGGGGGCTTCCEEEC
T ss_pred CcccCccC---------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-ccchHHhcCCCccEEEC
Confidence 55432111 11 4555555555555533 44444433 555665554332110 01112455556666666
Q ss_pred ecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCcc-ccceEEeccCCCceEeeecccccccccccccc
Q 007039 265 KGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFP-RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE 343 (620)
Q Consensus 265 ~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 343 (620)
+++.-...+ +......+++|++|++.++.....+... +..++ +|++|+++++.-...++. ......+++|+
T Consensus 326 ~~n~l~~~i--p~~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~ 397 (768)
T 3rgz_A 326 SSNNFSGEL--PMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQ 397 (768)
T ss_dssp CSSEEEEEC--CHHHHTTCTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCC
T ss_pred CCCcccCcC--CHHHHhcCCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCcCh---hhhhcccCCcc
Confidence 652211111 1121223455666666554332122111 11333 555565555531111110 00111245566
Q ss_pred hhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc
Q 007039 344 ALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG 423 (620)
Q Consensus 344 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 423 (620)
+|++.++.--..++.. ...+++|+.|++.+| .++...+ ..+.++++|++|++++|.... ..+......+.++.
T Consensus 398 ~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPT----LSNCSELVSLHLSFN-YLSGTIP-SSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLET 470 (768)
T ss_dssp EEECCSSEEEEECCGG----GGGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCE
T ss_pred EEECCCCccccccCHH----HhcCCCCCEEECcCC-cccCccc-HHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCceE
Confidence 6666665422122211 345666666666665 2332222 234566666666666654322 22222333344433
Q ss_pred -ccccccC--CCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEE
Q 007039 424 -FIEINAE--DDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLE 500 (620)
Q Consensus 424 -~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 500 (620)
.+..+.- ..+..+..+++|+.|++++|.-...++. ++..+++|++|++++| .++... +..+..+++|+.|+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N-~l~~~~-p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNN-SFSGNI-PAELGDCRSLIWLD 544 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSS-CCEEEC-CGGGGGCTTCCEEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCC-cccCcC-CHHHcCCCCCCEEE
Confidence 2222211 1223456788888888888842223322 3346888999999986 455332 46678889999999
Q ss_pred Ecccccc
Q 007039 501 IRNCRSI 507 (620)
Q Consensus 501 i~~C~~l 507 (620)
+++|+-.
T Consensus 545 Ls~N~l~ 551 (768)
T 3rgz_A 545 LNTNLFN 551 (768)
T ss_dssp CCSSEEE
T ss_pred CCCCccC
Confidence 9887644
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=311.32 Aligned_cols=518 Identities=13% Similarity=0.100 Sum_probs=282.0
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCC-cC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPE-RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL- 100 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l- 100 (620)
+.+...+|. .++..+++|++++|.+..+++ .. ++++|++|++++|.. ..+++..|.++++|++|++++|.+..+
T Consensus 21 ~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 21 NLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp TSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred CCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccccC
Confidence 344555554 567889999999999987744 33 899999999999987 455444568999999999999998765
Q ss_pred hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCC
Q 007039 101 PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (620)
Q Consensus 101 p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l 177 (620)
|..++++++|++|++++|.+.. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh
Confidence 6789999999999999999887 578899999999999999888762 334459999999999988 677766668999
Q ss_pred cCCc--EEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCC----CC
Q 007039 178 SQLE--ELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDE----FD 250 (620)
Q Consensus 178 ~~L~--~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~----~~ 250 (620)
++|+ .|++++|.+....+ .......|+.|+++++.. ++..+.. ..+....+......... ..
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~---------~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEP---------GAFDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp TTCCSEEEECTTCCCCEECT---------TTTTTCEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred cccceeEEecCCCccCccCh---------hHhhhccccccccCCchh--HHHHhhhccccchhheechhhccccccccCh
Confidence 9999 88998888763222 222335677777765541 1111111 11111111111100000 00
Q ss_pred cccccc--ccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEee
Q 007039 251 PLLVKS--EASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIV 328 (620)
Q Consensus 251 ~~~~~~--~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~ 328 (620)
..+... .+++.++++++.- ..+ +......+++|++|++.++... .+... +..+++|++|+++++.- ..+.
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l-~~~--~~~~~~~l~~L~~L~l~~n~l~-~lp~~---l~~l~~L~~L~l~~n~l-~~~~ 317 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYF-FNI--SSNTFHCFSGLQELDLTATHLS-ELPSG---LVGLSTLKKLVLSANKF-ENLC 317 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCC-SSC--CTTTTTTCTTCSEEECTTSCCS-CCCSS---CCSCTTCCEEECTTCCC-SBGG
T ss_pred hHhchhhcCceeEEEeecCcc-Ccc--CHHHhccccCCCEEeccCCccC-CCChh---hcccccCCEEECccCCc-CcCc
Confidence 001111 1344555544211 111 1111112345555555544322 22221 23555666666655531 1110
Q ss_pred ecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeec-chhHHHHhcccceEEEEecCCc
Q 007039 329 GSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF-SFSMAKNLLRLQKVKVEDCDDL 407 (620)
Q Consensus 329 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l 407 (620)
......+++|+.|+++++.....++... .+.+++|++|++.++. ++... ....+.++++|++|++++|. +
T Consensus 318 ----~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l 388 (606)
T 3t6q_A 318 ----QISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-P 388 (606)
T ss_dssp ----GGCGGGCTTCSEEECCSCSSCCBCCSST---TTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-C
T ss_pred ----hhhhhccCcCCEEECCCCCcccccchhh---hhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-C
Confidence 0133445556666665543222222211 3345566666665542 22221 01223455666666665543 2
Q ss_pred ccccccCCCCCCCCcc-ccccccC--C-CCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcce
Q 007039 408 KMIIGPDMEKPPTTQG-FIEINAE--D-DPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKY 483 (620)
Q Consensus 408 ~~~~~~~~~~~~~l~~-~~~~~~~--~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~ 483 (620)
..+.+......+.++. .+..+.- . ....+..+++|++|++++| .+....... +..+++|++|++++| .++.
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~ 463 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQL---FDGLPALQHLNLQGN-HFPK 463 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTT---TTTCTTCCEEECTTC-BCGG
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHH---HhCCCCCCEEECCCC-CCCc
Confidence 2222222222222222 0111100 0 0012345566666666666 333322221 234666666666665 3332
Q ss_pred --ecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccc
Q 007039 484 --LFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDE 561 (620)
Q Consensus 484 --l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~ 561 (620)
++....+..+++|++|++++|. ++.+ .+..... +++|++|+++++. ++.+ .|+.
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~------l~~L~~L~Ls~N~-l~~~---------------~~~~ 519 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCD-LSSI-DQHAFTS------LKMMNHVDLSHNR-LTSS---------------SIEA 519 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSC-CCEE-CTTTTTT------CTTCCEEECCSSC-CCGG---------------GGGG
T ss_pred cccccchhhccCCCccEEECCCCc-cCcc-Chhhhcc------ccCCCEEECCCCc-cCcC---------------ChhH
Confidence 1122345566666666666653 3322 1222232 5666666666652 2221 2345
Q ss_pred cccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCc
Q 007039 562 KVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 562 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l 606 (620)
+..+++| .|++++| .++.+++.. +..+++|++|++++||--
T Consensus 520 l~~l~~L-~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 520 LSHLKGI-YLNLASN-HISIILPSL--LPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GTTCCSC-EEECCSS-CCCCCCGGG--HHHHHTSSEEECTTCCEE
T ss_pred hCccccc-EEECcCC-cccccCHhh--cccCCCCCEEeCCCCCcc
Confidence 5666777 7777777 455554443 235677777777776643
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=311.05 Aligned_cols=515 Identities=16% Similarity=0.132 Sum_probs=333.2
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
++++..+..+..+|... -+.+++|++++|.+ ..+++..|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCcc--CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 46777888888887654 24799999999998 566555579999999999999999875 788999999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. +..|+++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 167 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY--- 167 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE---
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc---
Confidence 9886 67899999999999999999987 5679999999999999998 666532226679999999999998762
Q ss_pred cCCCCcchhhhcCCCCCC--EEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCcccccccc--ccEEEEeccccc
Q 007039 196 EGGSNASLVELERLTELT--TLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEA--SRLMMLKGIKKV 270 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~ 270 (620)
.....++++++|+ .|++++|....+++..+. ..|+.+++..+... ...+..... +..+.+....+.
T Consensus 168 -----~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 168 -----LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL----LVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp -----ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH----HHHHHHTTTCEEEEEECCCCTTS
T ss_pred -----cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH----HHHhhhccccchhheechhhccc
Confidence 2346788889999 889999988877776655 77888877433200 000122222 223333332211
Q ss_pred ccccchhHHHHHh--ccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 271 SILQENDGTKMLL--QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 271 ~~i~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
............+ .+++.|++.++......... +..+++|++|+++++. +..++. ....+++|++|+++
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~-l~~lp~-----~l~~l~~L~~L~l~ 309 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT---FHCFSGLQELDLTATH-LSELPS-----GLVGLSTLKKLVLS 309 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT---TTTCTTCSEEECTTSC-CSCCCS-----SCCSCTTCCEEECT
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHH---hccccCCCEEeccCCc-cCCCCh-----hhcccccCCEEECc
Confidence 1111111111111 26788888776443222222 4578999999999884 333322 45678999999999
Q ss_pred cccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccccc--ccCCCCCCCCcc-cc
Q 007039 349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII--GPDMEKPPTTQG-FI 425 (620)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~l~~-~~ 425 (620)
++. +..+.... ...+++|++|++.+|.....++. ..+.++++|++|+++++.. .... .......+.++. .+
T Consensus 310 ~n~-l~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 310 ANK-FENLCQIS---ASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp TCC-CSBGGGGC---GGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEEC
T ss_pred cCC-cCcCchhh---hhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEEC
Confidence 875 44443222 56789999999999765444433 3457899999999998654 3332 223334444444 12
Q ss_pred cccc--CCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcc
Q 007039 426 EINA--EDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503 (620)
Q Consensus 426 ~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 503 (620)
..+. ......+..+++|++|+++++ .+...... ..+..+++|++|++++| .++.. ++..+..+++|++|++++
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQ--SPFQNLHLLKVLNLSHS-LLDIS-SEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTC-CEECCTTC--CTTTTCTTCCEEECTTC-CCBTT-CTTTTTTCTTCCEEECTT
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCC-cCCCcccc--hhhhCcccCCEEECCCC-ccCCc-CHHHHhCCCCCCEEECCC
Confidence 2221 111223445666777777666 23222111 11235667777777765 34443 234456667777777777
Q ss_pred ccccccc-ccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhh
Q 007039 504 CRSIEGV-VNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKI 582 (620)
Q Consensus 504 C~~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l 582 (620)
|+--... ..+.... .+++|+.|+++++. ++.+ .|..+..+++|++|++++| .++.+
T Consensus 459 n~l~~~~~~~~~~~~------~l~~L~~L~Ls~n~-l~~~---------------~~~~~~~l~~L~~L~Ls~N-~l~~~ 515 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQ------TLGRLEILVLSFCD-LSSI---------------DQHAFTSLKMMNHVDLSHN-RLTSS 515 (606)
T ss_dssp CBCGGGEECSSCGGG------GCTTCCEEECTTSC-CCEE---------------CTTTTTTCTTCCEEECCSS-CCCGG
T ss_pred CCCCccccccchhhc------cCCCccEEECCCCc-cCcc---------------ChhhhccccCCCEEECCCC-ccCcC
Confidence 6522211 1111222 25667777776662 2222 1345677889999999988 56665
Q ss_pred ccccccCCcccCccEEEeccCcCcccccchhhhhh
Q 007039 583 WHHQLASKSFSKLKKLKISGCNNLLNIFPPLVRLL 617 (620)
Q Consensus 583 ~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~~~ 617 (620)
.... +.++++| +|++++| ++..+.|..+..+
T Consensus 516 ~~~~--l~~l~~L-~L~L~~N-~l~~~~~~~~~~l 546 (606)
T 3t6q_A 516 SIEA--LSHLKGI-YLNLASN-HISIILPSLLPIL 546 (606)
T ss_dssp GGGG--GTTCCSC-EEECCSS-CCCCCCGGGHHHH
T ss_pred ChhH--hCccccc-EEECcCC-cccccCHhhcccC
Confidence 5444 3477888 8888888 4556566656554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=308.95 Aligned_cols=487 Identities=16% Similarity=0.106 Sum_probs=298.3
Q ss_pred CccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC
Q 007039 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (620)
Q Consensus 23 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 100 (620)
.+.+...+|. ++++++++|++++|.+..++.. .++++|++|++++|.. ..+++..+.++++|++|++++|.+..+
T Consensus 12 s~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCcc
Confidence 3444555554 5678999999999999888763 3899999999999988 556555679999999999999999999
Q ss_pred hh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHh-
Q 007039 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS- 175 (620)
Q Consensus 101 p~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~- 175 (620)
|. .|+++++|++|++++|.+.. + ..|+++++|++|++++|.+..+ |..++++++|++|++++|. +..++...+.
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 167 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI 167 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG
T ss_pred ChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc
Confidence 86 69999999999999999887 4 7899999999999999988855 5568899999999999998 6777665454
Q ss_pred -CCcCCcEEEcCCCccccccccCCCCcchhhhc------------------------CCCCCCEEEeecCCCCCCCCccc
Q 007039 176 -KLSQLEELYMGNGFSGWEKVEGGSNASLVELE------------------------RLTELTTLEIEVPDAEILPPDFV 230 (620)
Q Consensus 176 -~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~l~~~~~~~~~~~~~ 230 (620)
.+++|++|++++|.+....+. .+..+. ..++|+.|+++++.....+...+
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPG-----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTT-----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred cccccccEEECCCCcccccChh-----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 568999999999877633221 111111 22567777777776555443322
Q ss_pred c----cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhh-----hc
Q 007039 231 S----VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS-----VV 301 (620)
Q Consensus 231 ~----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~ 301 (620)
. ++|+.|++..+..... ....+..+++|+.|+++++.- ..+ .......+++|+.|++.++..... +.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNI-QHL--FSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSCCB-SEE--CTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred hccCcCCCCEEECCCCCcCcc-CcccccCcccccEeeCCCCcc-Ccc--ChhhhcCCCCccEEeccchhhhccccccccc
Confidence 2 3488887755432211 111256677788888877321 111 111112356777777764321110 00
Q ss_pred --ccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcccccc-CchhhhccCCCCCCcCCCCcEEEeecC
Q 007039 302 --HELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT-NLETICYSQLREDQSFSNLRIINVDSC 378 (620)
Q Consensus 302 --~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~c 378 (620)
... .+..+++|++|+++++. +..+. ......+++|++|+++++. .+..++..... ....++|+.|++.+|
T Consensus 319 ~i~~~-~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~-~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 319 KIDDF-SFQWLKCLEHLNMEDND-IPGIK----SNMFTGLINLKYLSLSNSFTSLRTLTNETFV-SLAHSPLHILNLTKN 391 (680)
T ss_dssp EECTT-TTTTCTTCCEEECCSCC-BCCCC----TTTTTTCTTCCEEECTTCBSCCCEECTTTTG-GGTTSCCCEEECTTS
T ss_pred ccChh-hcccCCCCCEEECCCCc-cCCCC----hhHhccccCCcEEECCCCchhhhhcchhhhc-ccccCcCceEECCCC
Confidence 001 14467777777777764 22111 0134556777777776653 12222111110 111245666666664
Q ss_pred CCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc-cccccc--CCCCccccccCccceEecCCcccccc
Q 007039 379 RKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG-FIEINA--EDDPVHQVTFPRLEELELVSLTNIKK 455 (620)
Q Consensus 379 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~-~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~ 455 (620)
.++.+++ ..+..+++|++|+++++..-..++.......+.++. .+..+. ......+..+++|+.|++.++ .+..
T Consensus 392 -~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~ 468 (680)
T 1ziw_A 392 -KISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKN 468 (680)
T ss_dssp -CCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBC
T ss_pred -CCCeECh-hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccc
Confidence 3344332 234566666666666654333333222223333332 111111 111233456788888888887 3332
Q ss_pred ccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccC-Cccceeeccccceeccc
Q 007039 456 LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLG-GRDEFKVFPKLHYLSLH 534 (620)
Q Consensus 456 l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~ 534 (620)
+. .....+..+++|++|+++++ +++.+ ++..+..+++|++|+++++. ++.+......+ .......+++|+.|+++
T Consensus 469 ~~-~~p~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 469 VD-SSPSPFQPLRNLTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp TT-CSSCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred cc-cCCcccccCCCCCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECC
Confidence 21 11123346889999999985 67777 34567888999999999864 44432111000 00012236788888887
Q ss_pred cC
Q 007039 535 WL 536 (620)
Q Consensus 535 ~~ 536 (620)
++
T Consensus 545 ~N 546 (680)
T 1ziw_A 545 SN 546 (680)
T ss_dssp SS
T ss_pred CC
Confidence 76
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=316.17 Aligned_cols=193 Identities=19% Similarity=0.198 Sum_probs=90.7
Q ss_pred cCCcEEEEccCCCCcCCCC-----cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 36 QKDPIAISLPHRDIQELPE-----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~-----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
.+++++|++++|.+..... ..++++|++|++++|.+ ....+. ..+++|++|++++|.+...++.++++++|
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 225 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE-ESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc-cccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCC
Confidence 4556666666666643322 22455555555555544 222221 34555555555555554422225555555
Q ss_pred cEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-----------------------CCChhccCC-CCCCEEeCCCCc
Q 007039 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-----------------------QLPVEIGQL-TRLQLLDLSNCW 164 (620)
Q Consensus 111 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-----------------------~lp~~i~~l-~~L~~L~l~~~~ 164 (620)
++|++++|.+.. +..++++++|++|++++|.+. .+|..+..+ ++|++|++++|.
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 555555555443 445555555555555555444 444444332 455555555544
Q ss_pred cccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc-c-CceEEEEE
Q 007039 165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-V-ELQRYKIR 240 (620)
Q Consensus 165 ~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~-~L~~L~l~ 240 (620)
..+.+|.. ++++++|++|++++|.+.+.. ....++++++|++|++++|... .+|..+.. . +|+.|++.
T Consensus 306 l~~~~p~~-~~~l~~L~~L~L~~n~l~~~i-------p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 306 FYGAVPPF-FGSCSLLESLALSSNNFSGEL-------PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp EEECCCGG-GGGCTTCCEEECCSSEEEEEC-------CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CCCccchH-HhcCCCccEEECCCCcccCcC-------CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 22233332 445555555555544433111 1122455555555555555433 33443333 2 45555553
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=296.86 Aligned_cols=496 Identities=17% Similarity=0.143 Sum_probs=343.9
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 99 (620)
+.+.+..++|. .+++++++|++++|.+..++. ..++++|++|++++|.. ..++...|.++++|++|++++|.+..
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCc
Confidence 33445555564 567889999999999987764 33899999999999987 66766667899999999999999987
Q ss_pred Ch-hhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHH
Q 007039 100 LP-SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (620)
Q Consensus 100 lp-~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l 174 (620)
++ ..|+++++|++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence 65 689999999999999999887 4 469999999999999998885 78999999999999999998 677766558
Q ss_pred hCCcCC----cEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC--CCCCcccc-cCceEEEEEeCCCCCC
Q 007039 175 SKLSQL----EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE--ILPPDFVS-VELQRYKIRIGDGPED 247 (620)
Q Consensus 175 ~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~-~~L~~L~l~~~~~~~~ 247 (620)
+.+++| +.|++++|.+.... ...+... +|+.|+++++... .++..+.. +.++...+........
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~--------~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQ--------PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEEC--------TTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred cchhccchhhhhcccCCCCceecC--------HHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 888888 89999998876322 2333333 7899999876422 11111112 4444444432211110
Q ss_pred CC-----Cccccccc--cccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEecc
Q 007039 248 EF-----DPLLVKSE--ASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD 320 (620)
Q Consensus 248 ~~-----~~~~~~~~--~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 320 (620)
.. ...+..+. .++.+.+.++....... +. ....+++|+.|++.++... .+... +..+ +|++|++++
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~-~~-~~~~l~~L~~L~l~~~~l~-~l~~~---~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI-ID-LFNCLTNVSSFSLVSVTIE-RVKDF---SYNF-GWQHLELVN 313 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS-TT-TTGGGTTCSEEEEESCEEC-SCCBC---CSCC-CCSEEEEES
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhc-hh-hhcCcCcccEEEecCccch-hhhhh---hccC-CccEEeecc
Confidence 00 00112222 24455555421111111 11 1123578888888776533 33232 2355 999999998
Q ss_pred CCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeec-chhHHHHhcccceE
Q 007039 321 CSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLF-SFSMAKNLLRLQKV 399 (620)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L 399 (620)
+.- ..+ ....+++|+.|++.++......+ ...+++|++|++.+|. ++... ....+.++++|++|
T Consensus 314 n~~-~~l-------~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 314 CKF-GQF-------PTLKLKSLKRLTFTSNKGGNAFS------EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp CBC-SSC-------CBCBCSSCCEEEEESCBSCCBCC------CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEE
T ss_pred Ccc-ccc-------CcccccccCEEeCcCCccccccc------cccCCCCCEEeCcCCc-cCccccccccccccCccCEE
Confidence 853 222 33578999999999876332221 3578999999999874 44432 12356889999999
Q ss_pred EEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCC
Q 007039 400 KVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCH 479 (620)
Q Consensus 400 ~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~ 479 (620)
++++|. +..++ ..+..+++|++|++.++ .+...... ..+..+++|++|++++|
T Consensus 379 ~l~~n~-l~~~~----------------------~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~~l~~L~~L~l~~n- 431 (570)
T 2z63_A 379 DLSFNG-VITMS----------------------SNFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNLIYLDISHT- 431 (570)
T ss_dssp ECCSCS-EEEEE----------------------EEEETCTTCCEEECTTS-EEESCTTS--CTTTTCTTCCEEECTTS-
T ss_pred ECCCCc-ccccc----------------------ccccccCCCCEEEccCC-ccccccch--hhhhcCCCCCEEeCcCC-
Confidence 999875 33333 11456899999999998 44443221 12347899999999997
Q ss_pred CcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccc
Q 007039 480 RLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLF 559 (620)
Q Consensus 480 ~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~ 559 (620)
.++.. .+..+..+++|++|++.+|.-... ..+..... +++|+.|+++++. ++.+ .|
T Consensus 432 ~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~p~~~~~------l~~L~~L~l~~n~-l~~~---------------~~ 487 (570)
T 2z63_A 432 HTRVA-FNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTE------LRNLTFLDLSQCQ-LEQL---------------SP 487 (570)
T ss_dssp CCEEC-CTTTTTTCTTCCEEECTTCEEGGG-EECSCCTT------CTTCCEEECTTSC-CCEE---------------CT
T ss_pred ccccc-chhhhhcCCcCcEEECcCCcCccc-cchhhhhc------ccCCCEEECCCCc-cccC---------------Ch
Confidence 55555 346678899999999999874321 12344444 7899999999883 3332 14
Q ss_pred cccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCc
Q 007039 560 DEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 560 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l 606 (620)
..+..+++|++|++++| .++.++... +.++++|++|++++++--
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVPDGI--FDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSCBC
T ss_pred hhhhcccCCCEEeCCCC-cCCCCCHHH--hhcccCCcEEEecCCccc
Confidence 45678899999999999 688876654 457899999999986643
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=295.77 Aligned_cols=531 Identities=17% Similarity=0.087 Sum_probs=332.4
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
+.++.+++.+..+|.... +++++|++++|.+ ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 568888888888886543 7999999999998 667776679999999999999999876 678999999999999999
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. + ..|+++++|++|++++|.+..+| ..++++++|++|++++|. +...++..++++++|++|++++|.+...
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL-- 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB--
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccccc--
Confidence 9988 5 46999999999999999999887 569999999999999998 5555555588999999999999987622
Q ss_pred cCCCCcchhhh--cCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCC--CCCccccccccccEEEEecccc
Q 007039 196 EGGSNASLVEL--ERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPED--EFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 196 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
....+ .++++|++|++++|....++...+. .+|+.+.+........ ...+......+++.|+++++.-
T Consensus 161 ------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 161 ------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp ------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred ------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 22333 3568999999999987777665443 6777776632221000 0000000235788888877321
Q ss_pred cccccchhHHHHHh--ccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 270 VSILQENDGTKMLL--QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 270 ~~~i~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
..+. +.++. .+ ++|+.|++.++......... ++.+++|++|+++++.- ..+. ......+++|+.|++
T Consensus 235 -~~~~-~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l-~~~~----~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 235 -STTS-NTTFL-GLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFLEYNNI-QHLF----SHSLHGLFNVRYLNL 303 (680)
T ss_dssp -CEEC-TTTTG-GGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSCCB-SEEC----TTTTTTCTTCCEEEC
T ss_pred -cccC-hhHhh-ccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeCCCCcc-CccC----hhhhcCCCCccEEec
Confidence 1111 11111 12 34888888776543222222 44788888888888742 2221 114566788888888
Q ss_pred ccccCchh-----hhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCC-cccccccCCC--CCC
Q 007039 348 MFLTNLET-----ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD-LKMIIGPDME--KPP 419 (620)
Q Consensus 348 ~~~~~l~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~--~~~ 419 (620)
.++..-.. ++.......+.+++|++|++.++ .++..++ ..+.++++|++|++++|.. +..+...... ..+
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 76432111 11100002456788888888875 4454433 2456788888888887642 2222211100 001
Q ss_pred CCcc-cccccc--CCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcc
Q 007039 420 TTQG-FIEINA--EDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQL 496 (620)
Q Consensus 420 ~l~~-~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L 496 (620)
.++. ....+. ......+..+++|+.|+++++.-...++... +..+++|++|++++| .++.+ ....+..+++|
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~~L 456 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE---WRGLENIFEIYLSYN-KYLQL-TRNSFALVPSL 456 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG---GTTCTTCCEEECCSC-SEEEC-CTTTTTTCTTC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc---ccCcccccEEecCCC-Cccee-ChhhhhcCccc
Confidence 2221 111111 0112234567778888888773222232222 235778888888886 45555 34556677888
Q ss_pred cEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCC--------cccccCCCCcccccc--------
Q 007039 497 QHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASP--------EDVIHTEMQPQSLFD-------- 560 (620)
Q Consensus 497 ~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~--------~~~~~~~~~l~~l~~-------- 560 (620)
+.|++.++.--..-..+..... +++|+.|+++++. ++.++.. .......+.++.++.
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~------l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQP------LRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTT------CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred ccchhccccccccccCCccccc------CCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 8888887652111111333333 6788888887753 3332211 000012233343322
Q ss_pred -ccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCcccccch
Q 007039 561 -EKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFPP 612 (620)
Q Consensus 561 -~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~ 612 (620)
.+..+++|++|+++++ .++.++... +.++++|++|+++++ +++. +|.
T Consensus 530 ~~~~~l~~L~~L~L~~N-~l~~i~~~~--~~~l~~L~~L~Ls~N-~l~~-l~~ 577 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESN-GFDEIPVEV--FKDLFELKIIDLGLN-NLNT-LPA 577 (680)
T ss_dssp CTTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCC-CCT
T ss_pred hhhcCCCCCCEEECCCC-CCCCCCHHH--cccccCcceeECCCC-CCCc-CCH
Confidence 1466778888888887 577666543 457788888888554 5666 443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=291.71 Aligned_cols=492 Identities=16% Similarity=0.156 Sum_probs=327.8
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~ 118 (620)
+.++-++..+..+|... .+++++|++++|.. ..++...|.++++|++|++++|.+..++ ..|+++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 45666666777777643 35799999999998 6666555789999999999999998874 67899999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCccccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
.+.. +..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCcccee
Confidence 9887 4789999999999999999998876 59999999999999998 554 5665 89999999999999987622
Q ss_pred cccCCCCcchhhhcCCCCC----CEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc-
Q 007039 194 KVEGGSNASLVELERLTEL----TTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI- 267 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 267 (620)
....++++++| +.++++.+....++...+. .+|+.+.+.............+..+..++...+...
T Consensus 165 --------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 165 --------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp --------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred --------cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecccc
Confidence 22345555555 7999999988877776555 678888886542111111111233444444433321
Q ss_pred -cccccccch-hHHHHHhc--cccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccc
Q 007039 268 -KKVSILQEN-DGTKMLLQ--RTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE 343 (620)
Q Consensus 268 -~~~~~i~~~-~~~~~~l~--~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 343 (620)
.....+... .+....++ .++.+.+..+....... ...+..+++|++|+++++. +..++ .....+ +|+
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~-l~~l~-----~~~~~~-~L~ 307 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI--IDLFNCLTNVSSFSLVSVT-IERVK-----DFSYNF-GWQ 307 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS--TTTTGGGTTCSEEEEESCE-ECSCC-----BCCSCC-CCS
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhc--hhhhcCcCcccEEEecCcc-chhhh-----hhhccC-Ccc
Confidence 111111100 00000111 22333333221111110 1113467888888888774 22221 123344 788
Q ss_pred hhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc
Q 007039 344 ALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG 423 (620)
Q Consensus 344 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 423 (620)
.|++.++. +..++ ...+++|++|++.++......+. ..+++|++|++++|.. .....
T Consensus 308 ~L~l~~n~-~~~l~------~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l-~~~~~----------- 364 (570)
T 2z63_A 308 HLELVNCK-FGQFP------TLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGL-SFKGC----------- 364 (570)
T ss_dssp EEEEESCB-CSSCC------BCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCC-BEEEE-----------
T ss_pred EEeeccCc-ccccC------cccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCcc-Ccccc-----------
Confidence 88888765 33322 34678888888888754333322 4678888888887642 22210
Q ss_pred ccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcc
Q 007039 424 FIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503 (620)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 503 (620)
.......+++|+.|++++| .+..++.. +..+++|++|++++| .++...+...+..+++|++|++++
T Consensus 365 --------~~~~~~~~~~L~~L~l~~n-~l~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 365 --------CSQSDFGTTSLKYLDLSFN-GVITMSSN----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp --------EEHHHHTCSCCCEEECCSC-SEEEEEEE----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTT
T ss_pred --------ccccccccCccCEEECCCC-cccccccc----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcC
Confidence 0022456789999999998 45555433 346899999999996 566554445678899999999999
Q ss_pred cccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhc
Q 007039 504 CRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIW 583 (620)
Q Consensus 504 C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~ 583 (620)
|...... +..... +++|+.|++.++.- +. ..+|..+..+++|++|++++| .++.+.
T Consensus 431 n~l~~~~--~~~~~~------l~~L~~L~l~~n~l-~~--------------~~~p~~~~~l~~L~~L~l~~n-~l~~~~ 486 (570)
T 2z63_A 431 THTRVAF--NGIFNG------LSSLEVLKMAGNSF-QE--------------NFLPDIFTELRNLTFLDLSQC-QLEQLS 486 (570)
T ss_dssp SCCEECC--TTTTTT------CTTCCEEECTTCEE-GG--------------GEECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred Ccccccc--hhhhhc------CCcCcEEECcCCcC-cc--------------ccchhhhhcccCCCEEECCCC-ccccCC
Confidence 8643221 333333 78899999988742 10 135566788999999999999 577664
Q ss_pred cccccCCcccCccEEEeccCcCcccccchhhhhh
Q 007039 584 HHQLASKSFSKLKKLKISGCNNLLNIFPPLVRLL 617 (620)
Q Consensus 584 ~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~~~ 617 (620)
... +.++++|++|++++| +++.+.|..+..+
T Consensus 487 ~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~l 517 (570)
T 2z63_A 487 PTA--FNSLSSLQVLNMASN-QLKSVPDGIFDRL 517 (570)
T ss_dssp TTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTC
T ss_pred hhh--hhcccCCCEEeCCCC-cCCCCCHHHhhcc
Confidence 443 457899999999998 6777555555543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=286.39 Aligned_cols=484 Identities=13% Similarity=0.111 Sum_probs=214.3
Q ss_pred EccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCC
Q 007039 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELA 121 (620)
Q Consensus 43 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~ 121 (620)
+.+++.+..+|... .++|++|++++|.+ ..++...+.++++|++|++++|.+..++ ..++++++|++|++++|.+.
T Consensus 11 ~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFTSIPSGL-TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCSSCCSCC-CTTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccccccccC-CCCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 34444444444432 24555555555554 2332222355555555555555554433 34555555555555555554
Q ss_pred C-h-hhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccC
Q 007039 122 D-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG 197 (620)
Q Consensus 122 ~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (620)
. + ..|+++++|++|++++|.++. +|..++++++|++|++++|...+.+|...+.++++|++|++++|.+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----- 162 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN----- 162 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-----
Confidence 4 2 335555555555555555542 234455555555555555544444443335555555555555554431
Q ss_pred CCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCC--CCccccccccccEEEEecccccccc
Q 007039 198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDE--FDPLLVKSEASRLMMLKGIKKVSIL 273 (620)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~i 273 (620)
.....++++++|++|+++++....++..... ++|+.|++..+...... ..+.....++++.|.+.++ .+
T Consensus 163 ---~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n----~l 235 (549)
T 2z81_A 163 ---YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS----VL 235 (549)
T ss_dssp ---ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC----EE
T ss_pred ---cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc----cc
Confidence 1223444555555555555544443333222 45555555443322110 1111234566777777662 22
Q ss_pred cc--hhHHH---HHhccccceecccccChhh--hc-ccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 274 QE--NDGTK---MLLQRTEDLWLETLEGVQS--VV-HELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 274 ~~--~~~~~---~~l~~L~~L~l~~~~~~~~--~~-~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
.. +..+. ..+++++.+++.++..... +. .....+..+++|+.|.+.++.--..............+++|+.|
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 21 11111 1123455555544432110 00 00111234555566655554310000000000001112334444
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecc-hhHHHHhcccceEEEEecCCcccccccCCCCCCCCccc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF 424 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~ 424 (620)
+++++. +..++... .+.+++|+.|++.++.--...+. ...+..+++|++|++++|. ++.+...
T Consensus 316 ~l~~n~-l~~ip~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------- 379 (549)
T 2z81_A 316 TVENSK-VFLVPCSF---SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKT----------- 379 (549)
T ss_dssp EEESSC-CCCCCHHH---HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHH-----------
T ss_pred EeccCc-cccCCHHH---HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccc-----------
Confidence 443322 22221110 01234444444444321111100 0011233444444444432 1111100
Q ss_pred cccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 425 IEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 425 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
......+++|++|++++| +++.++.. +..+++|++|++++| .++.++ .. ..++|++|++++|
T Consensus 380 --------~~~~~~l~~L~~L~Ls~N-~l~~lp~~----~~~~~~L~~L~Ls~N-~l~~l~-~~---~~~~L~~L~Ls~N 441 (549)
T 2z81_A 380 --------GEILLTLKNLTSLDISRN-TFHPMPDS----CQWPEKMRFLNLSST-GIRVVK-TC---IPQTLEVLDVSNN 441 (549)
T ss_dssp --------HHHGGGCTTCCEEECTTC-CCCCCCSC----CCCCTTCCEEECTTS-CCSCCC-TT---SCTTCSEEECCSS
T ss_pred --------hhhhhcCCCCCEEECCCC-CCccCChh----hcccccccEEECCCC-Cccccc-ch---hcCCceEEECCCC
Confidence 001234555555555555 44443322 123555555555554 344431 11 1245555555554
Q ss_pred ccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcc
Q 007039 505 RSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWH 584 (620)
Q Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~ 584 (620)
. ++.++ . .+++|++|+++++ .++++|+ ...+++|++|++++| .++.++.
T Consensus 442 ~-l~~~~-----~------~l~~L~~L~Ls~N-----------------~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 442 N-LDSFS-----L------FLPRLQELYISRN-----------------KLKTLPD-ASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp C-CSCCC-----C------CCTTCCEEECCSS-----------------CCSSCCC-GGGCTTCCEEECCSS-CCCCCCT
T ss_pred C-hhhhc-----c------cCChhcEEECCCC-----------------ccCcCCC-cccCccCCEEecCCC-ccCCcCH
Confidence 2 32221 1 2556666666655 3334454 356889999999998 6887766
Q ss_pred ccccCCcccCccEEEeccCcCccc
Q 007039 585 HQLASKSFSKLKKLKISGCNNLLN 608 (620)
Q Consensus 585 ~~~~~~~~~sL~~L~i~~C~~l~~ 608 (620)
.. +.++++|++|++.+|+-.-.
T Consensus 491 ~~--~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 491 GI--FDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp TG--GGGCTTCCEEECCSSCBCCC
T ss_pred HH--HhcCcccCEEEecCCCccCC
Confidence 54 34789999999998875443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-31 Score=300.17 Aligned_cols=349 Identities=15% Similarity=0.141 Sum_probs=220.5
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCC-cC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE-RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 99 (620)
+...+...+|. .++++++|++++|.+..+.+ .. ++++|++|++++|.. ...+++..|.++++|++|++++|.+..
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 34455666665 68999999999999977643 33 899999999999966 567755667999999999999999987
Q ss_pred C-hhhhhcccCCcEEEccCCCCCC--hhh--hcCCCCCCEEecCCCCCCCC--ChhccCCCCCCEEeCCCCccccccchH
Q 007039 100 L-PSSLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCWWLEVIAPN 172 (620)
Q Consensus 100 l-p~~~~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~ 172 (620)
+ |..|+++++|++|++++|.+.+ +.. ++++++|++|++++|.+..+ +..++++++|++|++++|. +..+...
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~ 166 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEH 166 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHH
Confidence 5 7899999999999999999875 444 89999999999999988865 3579999999999999988 4444433
Q ss_pred HHhCC--cCCcEEEcCCCccccccccCCCCcchhhhcCCC------CCCEEEeecCCCC-CCCCcccc----cCceEEEE
Q 007039 173 VISKL--SQLEELYMGNGFSGWEKVEGGSNASLVELERLT------ELTTLEIEVPDAE-ILPPDFVS----VELQRYKI 239 (620)
Q Consensus 173 ~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~~~----~~L~~L~l 239 (620)
.+..+ ++|+.|++++|.+....+ ..++++. .|+.|++++|... ..+..+.. ..++.+.+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~--------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVS--------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCC--------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred HcccccCCccceEECCCCccccccc--------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 37766 899999999988763221 2222222 4999999988643 23333222 56666665
Q ss_pred EeCCCCCC---CC-----Ccccc--ccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCC
Q 007039 240 RIGDGPED---EF-----DPLLV--KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEG 309 (620)
Q Consensus 240 ~~~~~~~~---~~-----~~~~~--~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 309 (620)
........ .. ...+. ..++++.|+++++.- ..+ .......+++|+.|++.++.-....... +.+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l-~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~ 312 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV-FSL--NSRVFETLKDLKVLNLAYNKINKIADEA---FYG 312 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC-CEE--CSCCSSSCCCCCEEEEESCCCCEECTTT---TTT
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcc-ccc--ChhhhhcCCCCCEEECCCCcCCCCChHH---hcC
Confidence 41110000 00 00011 124566666666321 111 0111112456666666554432221122 335
Q ss_pred ccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhH
Q 007039 310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSM 389 (620)
Q Consensus 310 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 389 (620)
+++|++|+++++. +..+. ......+++|+.|+++++ .+..++... ...+++|+.|++.++ .++.++
T Consensus 313 l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~i~---- 378 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELY----SSNFYGLPKVAYIDLQKN-HIAIIQDQT---FKFLEKLQTLDLRDN-ALTTIH---- 378 (844)
T ss_dssp CSSCCEEEEESCC-CSCCC----SCSCSSCTTCCEEECCSC-CCCCCCSSC---SCSCCCCCEEEEETC-CSCCCS----
T ss_pred CCCCCEEECCCCC-CCccC----HHHhcCCCCCCEEECCCC-CCCccChhh---hcCCCCCCEEECCCC-CCCccc----
Confidence 6677777776663 11110 113445666666666664 343333221 345666777777664 344332
Q ss_pred HHHhcccceEEEEec
Q 007039 390 AKNLLRLQKVKVEDC 404 (620)
Q Consensus 390 ~~~l~~L~~L~l~~c 404 (620)
.+++|+.|.++++
T Consensus 379 --~~~~L~~L~l~~N 391 (844)
T 3j0a_A 379 --FIPSIPDIFLSGN 391 (844)
T ss_dssp --SCCSCSEEEEESC
T ss_pred --CCCCcchhccCCC
Confidence 2566677766664
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=288.15 Aligned_cols=514 Identities=17% Similarity=0.089 Sum_probs=321.1
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCC-CCC-hhhhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~-~~l-p~~~~~l~~L~~L~L~~ 117 (620)
+..+.+++.+..+|. -.+++++|++++|.+ ..++...|.++++|++|++++|.. ..+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 567778888999988 568999999999998 555444469999999999999954 456 77899999999999999
Q ss_pred CCCCC--hhhhcCCCCCCEEecCCCCCCC-CChh--ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccc
Q 007039 118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 118 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
|.+.. |..|+++++|++|++++|.+.. +|.. ++++++|++|++++|......+...++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99886 6899999999999999998885 5655 89999999999999984333343458999999999999998762
Q ss_pred ccccCCCCcchhhhcCC--CCCCEEEeecCCCCCC-CCcccc-------cCceEEEEEeCCCCCCCC--Ccccccccccc
Q 007039 193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEIL-PPDFVS-------VELQRYKIRIGDGPEDEF--DPLLVKSEASR 260 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~~~~-------~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~ 260 (620)
. ....++.+ ++|+.|+++.|..... +..+.. ..|+.|++..+....... .........+.
T Consensus 163 ~--------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 163 V--------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp C--------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred e--------CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 2 22445544 7899999998875432 222221 348888886543211100 00111224566
Q ss_pred EEEEeccccc-----ccccch--hHHH-HHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeeccc
Q 007039 261 LMMLKGIKKV-----SILQEN--DGTK-MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR 332 (620)
Q Consensus 261 ~L~l~~~~~~-----~~i~~~--~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 332 (620)
.+.+...... ..+... .... ...++++.|++.++......... +..+++|+.|+++++. +..+..
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-i~~~~~--- 307 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---FETLKDLKVLNLAYNK-INKIAD--- 307 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC---SSSCCCCCEEEEESCC-CCEECT---
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh---hhcCCCCCEEECCCCc-CCCCCh---
Confidence 6666521100 111100 0000 01357888888776543322222 4578899999998885 332211
Q ss_pred ccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccc
Q 007039 333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (620)
Q Consensus 333 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 412 (620)
.....+++|+.|+++++. +..+.... ...+++|+.|++.++ .++.+++. .+.++++|++|+++++. +..+..
T Consensus 308 -~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~ 379 (844)
T 3j0a_A 308 -EAFYGLDNLQVLNLSYNL-LGELYSSN---FYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTIHF 379 (844)
T ss_dssp -TTTTTCSSCCEEEEESCC-CSCCCSCS---CSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCCSS
T ss_pred -HHhcCCCCCCEEECCCCC-CCccCHHH---hcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcccC
Confidence 145677889999998864 44432222 567889999999886 56665442 35678999999998864 333321
Q ss_pred cCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcc
Q 007039 413 PDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNS 492 (620)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 492 (620)
.+.+.............+ ....+++.|+++++ ++..+... ..+..+++|++|+++++ +++...+...+..
T Consensus 380 -----~~~L~~L~l~~N~l~~l~-~~~~~l~~L~ls~N-~l~~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 380 -----IPSIPDIFLSGNKLVTLP-KINLTANLIHLSEN-RLENLDIL--YFLLRVPHLQILILNQN-RFSSCSGDQTPSE 449 (844)
T ss_dssp -----CCSCSEEEEESCCCCCCC-CCCTTCCEEECCSC-CCCSSTTH--HHHTTCTTCCEEEEESC-CCCCCCSSSSSCS
T ss_pred -----CCCcchhccCCCCccccc-ccccccceeecccC-ccccCchh--hhhhcCCccceeeCCCC-ccccccccccccc
Confidence 222222111111111111 11334555555554 33332111 11224677777777774 5555433334455
Q ss_pred cCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEE
Q 007039 493 LGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLH 572 (620)
Q Consensus 493 l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~ 572 (620)
+++|+.|+++++. ++.....+.. ......+++|+.|+|+++ +++.++ |..+..+++|++|+
T Consensus 450 ~~~L~~L~Ls~N~-l~~~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~---------------~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 450 NPSLEQLFLGENM-LQLAWETELC--WDVFEGLSHLQVLYLNHN-YLNSLP---------------PGVFSHLTALRGLS 510 (844)
T ss_dssp CTTCCBCEEESCC-CSSSCCSCCC--SSCSSCBCCEECCCCCHH-HHTTCC---------------TTSSSSCCSCSEEE
T ss_pred CCccccccCCCCc-cccccccccc--hhhhcCcccccEEECCCC-cccccC---------------hhHccchhhhheeE
Confidence 6777777777743 3221110000 011223566777777665 333322 22356889999999
Q ss_pred eccccchhhhccccccCCcccCccEEEeccCcCcccccchhhh
Q 007039 573 ISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLNIFPPLVR 615 (620)
Q Consensus 573 i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l~~~~p~~~~ 615 (620)
++++ .|+.++...++ ++|+.|+++++ ++..+.|..+.
T Consensus 511 Ls~N-~l~~l~~~~~~----~~L~~L~Ls~N-~l~~~~~~~~~ 547 (844)
T 3j0a_A 511 LNSN-RLTVLSHNDLP----ANLEILDISRN-QLLAPNPDVFV 547 (844)
T ss_dssp EESC-CCSSCCCCCCC----SCCCEEEEEEE-CCCCCCSCCCS
T ss_pred CCCC-CCCccChhhhh----ccccEEECCCC-cCCCCChhHhC
Confidence 9999 78888777654 89999999886 45554665543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=277.20 Aligned_cols=467 Identities=13% Similarity=0.073 Sum_probs=232.3
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
++++++++.+..+|.... ++|++|++++|.+ ..++...+..+++|++|++++|.+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 567777777777765444 6777777777766 445544456777777777777777665 556777777777777777
Q ss_pred CCCC-hhhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHHhCCcCC--cEEEcCCCccccc
Q 007039 119 ELAD-IAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFSGWE 193 (620)
Q Consensus 119 ~~~~-~~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L--~~L~l~~~~~~~~ 193 (620)
.+.. |.. .+++|++|++++|.++. +|..++++++|++|++++|. +... .+..+++| ++|++++|.+..
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~~- 152 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETYG- 152 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTTT-
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccccc-
Confidence 7666 433 67777777777776664 45667777777777777765 3331 25556666 777776665510
Q ss_pred cccCCCCcchhhhcCCCC-CCEEEeecCCCC-CCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccc
Q 007039 194 KVEGGSNASLVELERLTE-LTTLEIEVPDAE-ILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS 271 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 271 (620)
....+..++.++. .-.++++.+... .++.. .+..+++|+.++++++....
T Consensus 153 -----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------------~~~~l~~L~~L~l~~n~~~~ 204 (520)
T 2z7x_B 153 -----EKEDPEGLQDFNTESLHIVFPTNKEFHFILDV-----------------------SVKTVANLELSNIKCVLEDN 204 (520)
T ss_dssp -----SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC-----------------------CCTTCSEEEECCEEECCSTT
T ss_pred -----cccccccccccccceEEEEeccCcchhhhhhh-----------------------hhhcccceeecccccccccc
Confidence 0112233333332 112222222211 11111 12334444444444421100
Q ss_pred cccchhHHH---HHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 272 ILQENDGTK---MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 272 ~i~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
......+.. ..+++|+.|++.++.........+......++|++|+++++.-...++..........++.|+.+++.
T Consensus 205 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~ 284 (520)
T 2z7x_B 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284 (520)
T ss_dssp TTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEE
T ss_pred ccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccc
Confidence 000000000 01223333333322211110000000001235555555554311011100000001334444444444
Q ss_pred cccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccc
Q 007039 349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEIN 428 (620)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~ 428 (620)
++.- .++...+...-.-.+|+.|++.++. +...+. ...+++|++|++++|..-...+
T Consensus 285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~----------------- 341 (520)
T 2z7x_B 285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNNLLTDTVF----------------- 341 (520)
T ss_dssp ECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTT-----------------
T ss_pred ccce--ecchhhhhcccccCceeEEEcCCCc-cccccc---hhhCCcccEEEeECCccChhhh-----------------
Confidence 3321 1110000000001345566665543 222211 1345566666666543222111
Q ss_pred cCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcce-ecchhhhcccCcccEEEEcccccc
Q 007039 429 AEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKY-LFSYSMVNSLGQLQHLEIRNCRSI 507 (620)
Q Consensus 429 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l 507 (620)
..+..+++|++|++++| ++..++.. ...+..+++|++|+++++ .++. + +...+..+++|++|++++|.--
T Consensus 342 -----~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~~~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 342 -----ENCGHLTELETLILQMN-QLKELSKI-AEMTTQMKSLQQLDISQN-SVSYDE-KKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp -----TTCCCCSSCCEEECCSS-CCCBHHHH-HHHHTTCTTCCEEECCSS-CCBCCG-GGCSCCCCTTCCEEECCSSCCC
T ss_pred -----hhhccCCCCCEEEccCC-ccCccccc-hHHHhhCCCCCEEECCCC-cCCccc-ccchhccCccCCEEECcCCCCC
Confidence 22345667777777776 34432110 011235677777777774 4554 4 3334556677777777776522
Q ss_pred cccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccc
Q 007039 508 EGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQL 587 (620)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 587 (620)
..+ +... .++|+.|+++++ .++++|..+..+++|++|++++| .++.+|...
T Consensus 413 ~~~--~~~l--------~~~L~~L~Ls~N-----------------~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~- 463 (520)
T 2z7x_B 413 DTI--FRCL--------PPRIKVLDLHSN-----------------KIKSIPKQVVKLEALQELNVASN-QLKSVPDGI- 463 (520)
T ss_dssp GGG--GGSC--------CTTCCEEECCSS-----------------CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT-
T ss_pred cch--hhhh--------cccCCEEECCCC-----------------cccccchhhhcCCCCCEEECCCC-cCCccCHHH-
Confidence 221 1110 146777777665 33456677778999999999999 688887663
Q ss_pred cCCcccCccEEEeccCcCc
Q 007039 588 ASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 588 ~~~~~~sL~~L~i~~C~~l 606 (620)
+.++++|++|++.++|--
T Consensus 464 -~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 464 -FDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -TTTCTTCCEEECCSSCBC
T ss_pred -hccCCcccEEECcCCCCc
Confidence 457899999999988744
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=268.59 Aligned_cols=482 Identities=17% Similarity=0.167 Sum_probs=315.8
Q ss_pred CCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCE
Q 007039 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (620)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 134 (620)
|+...+.+.+++.. ..+|..+ .++|++|++++|.+..+ |..++++++|++|++++|.+.. +..|+++++|++
T Consensus 4 C~~~~~c~~~~~~l--~~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 4 CDASGVCDGRSRSF--TSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCceEECCCCcc--ccccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 44555677777776 7788754 48999999999999876 5789999999999999999887 478999999999
Q ss_pred EecCCCCCCCCChh-ccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCC
Q 007039 135 LSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE 211 (620)
Q Consensus 135 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 211 (620)
|++++|.+..+|.. ++++++|++|++++|. +.. .|.. ++++++|++|++++|..... .....++++++
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~-------~~~~~~~~l~~ 149 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFSE-------IRRIDFAGLTS 149 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCCE-------ECTTTTTTCCE
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCccccc-------cCHhhhhcccc
Confidence 99999999988765 9999999999999998 554 3443 88999999999998874321 12246788999
Q ss_pred CCEEEeecCCCCC-CCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccce
Q 007039 212 LTTLEIEVPDAEI-LPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDL 289 (620)
Q Consensus 212 L~~L~l~~~~~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L 289 (620)
|++|++++|.... .+..+.. ++|+.|.+........ .......+++|+.|+++++.-......+.++...+++|+.|
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 9999999998765 3444444 7788888865432111 00012346778888887732211000011111224567777
Q ss_pred ecccccChhhhcccCC-cCCCccccceEEeccCCCceEeeec--ccccccccccccchhccccccCchhhhccCCCC-CC
Q 007039 290 WLETLEGVQSVVHELD-DGEGFPRLKRLLVTDCSEILHIVGS--VRRVRCEVFPLLEALSLMFLTNLETICYSQLRE-DQ 365 (620)
Q Consensus 290 ~l~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~ 365 (620)
++.++.........+. ....+++|+.+++++|.. ..+.+- ........+++|+.|.+.++.--.......+.. ..
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 7765543222111110 123567778888877741 111000 000123456677777776653111110000000 12
Q ss_pred cCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE
Q 007039 366 SFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL 445 (620)
Q Consensus 366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 445 (620)
.+++|++|++.++ .++.+|. ..+.++++|++|+++++.....++.. ......+++|+.|
T Consensus 308 ~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------~~~~~~l~~L~~L 366 (549)
T 2z81_A 308 LLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKN-------------------SACKGAWPSLQTL 366 (549)
T ss_dssp HSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHH-------------------HTCTTSSTTCCEE
T ss_pred hcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccc-------------------hhhhhccccCcEE
Confidence 3567888888885 4665543 34467889999998887644333210 0113457889999
Q ss_pred ecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeec
Q 007039 446 ELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVF 525 (620)
Q Consensus 446 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~ 525 (620)
++++| .++.++... ..+..+++|++|++++| +++.+ +..+..+++|++|++++|. ++.+ +.. .+
T Consensus 367 ~Ls~N-~l~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l--p~~~~~~~~L~~L~Ls~N~-l~~l--~~~--------~~ 430 (549)
T 2z81_A 367 VLSQN-HLRSMQKTG-EILLTLKNLTSLDISRN-TFHPM--PDSCQWPEKMRFLNLSSTG-IRVV--KTC--------IP 430 (549)
T ss_dssp ECTTS-CCCCHHHHH-HHGGGCTTCCEEECTTC-CCCCC--CSCCCCCTTCCEEECTTSC-CSCC--CTT--------SC
T ss_pred EccCC-cccccccch-hhhhcCCCCCEEECCCC-CCccC--ChhhcccccccEEECCCCC-cccc--cch--------hc
Confidence 99988 565543210 01246889999999996 77776 3456788999999999976 4433 111 13
Q ss_pred cccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcC
Q 007039 526 PKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNN 605 (620)
Q Consensus 526 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 605 (620)
++|+.|+++++ +++.+ ...+++|++|++++| +++.+|... .+++|++|++++| +
T Consensus 431 ~~L~~L~Ls~N-~l~~~-------------------~~~l~~L~~L~Ls~N-~l~~ip~~~----~l~~L~~L~Ls~N-~ 484 (549)
T 2z81_A 431 QTLEVLDVSNN-NLDSF-------------------SLFLPRLQELYISRN-KLKTLPDAS----LFPVLLVMKISRN-Q 484 (549)
T ss_dssp TTCSEEECCSS-CCSCC-------------------CCCCTTCCEEECCSS-CCSSCCCGG----GCTTCCEEECCSS-C
T ss_pred CCceEEECCCC-Chhhh-------------------cccCChhcEEECCCC-ccCcCCCcc----cCccCCEEecCCC-c
Confidence 58899999887 34432 146789999999999 788887643 5799999999998 6
Q ss_pred cccccchhhhhhc
Q 007039 606 LLNIFPPLVRLLY 618 (620)
Q Consensus 606 l~~~~p~~~~~~~ 618 (620)
++.+.|..+..+.
T Consensus 485 l~~~~~~~~~~l~ 497 (549)
T 2z81_A 485 LKSVPDGIFDRLT 497 (549)
T ss_dssp CCCCCTTGGGGCT
T ss_pred cCCcCHHHHhcCc
Confidence 7776666666554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-29 Score=273.27 Aligned_cols=516 Identities=16% Similarity=0.111 Sum_probs=286.0
Q ss_pred CccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC
Q 007039 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (620)
Q Consensus 23 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 100 (620)
.+.+..++|. +++.++++|++++|.++.+++. .++++|++|++++|.+ ..+++..|.++++|++|++++|+++.+
T Consensus 39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 3445566664 5677888888888888877653 2788888888888877 667776678888888888888888887
Q ss_pred hh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHh
Q 007039 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 101 p~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
|. .|+++.+|++|++++|.+.. + ..|+++++|++|++++|.+. .+|..++.+++|++|++++|. +..++...+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence 64 57888888888888888877 4 46888888888888888776 356778888888888888887 5666554465
Q ss_pred CCcCCc----EEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCc-ccc-cCceEEEEEeCCCC---
Q 007039 176 KLSQLE----ELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPD-FVS-VELQRYKIRIGDGP--- 245 (620)
Q Consensus 176 ~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~~-~~L~~L~l~~~~~~--- 245 (620)
.+.+++ .++++.+.+.... ........++.+.+..+... .+... +.. ..++...+......
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~---------~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQ---------PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEEC---------TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred chhhhhhhhhhhhcccCcccccC---------cccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 555443 4566665554211 11112223344444443211 00000 011 23333333221100
Q ss_pred --CCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCC
Q 007039 246 --EDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSE 323 (620)
Q Consensus 246 --~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 323 (620)
.......+.....+....+....................+++.+.+.+...... ..+.....|+.|++.++..
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-----KDFSYNFGWQHLELVNCKF 340 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-----GGGGSCCCCSEEEEESCEE
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-----cccccchhhhhhhcccccc
Confidence 111111122333333333332111111110111111233455554443332111 1122455677777766631
Q ss_pred ceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEe
Q 007039 324 ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (620)
Q Consensus 324 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (620)
..+ ....++.|+.+.+.+...-. ......+++|+.|.+.+..--...........+.+|+.+++..
T Consensus 341 -~~~-------~~~~l~~L~~l~l~~n~~~~------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~ 406 (635)
T 4g8a_A 341 -GQF-------PTLKLKSLKRLTFTSNKGGN------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF 406 (635)
T ss_dssp -SSC-------CCCBCTTCCEEEEESCCSCC------BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred -cCc-------CcccchhhhhcccccccCCC------Ccccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence 111 22345556665555433111 0113346777777776643222211222344566777776655
Q ss_pred cCCcccccccCCCCCCCCcc-cccccc---CCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCC
Q 007039 404 CDDLKMIIGPDMEKPPTTQG-FIEINA---EDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCH 479 (620)
Q Consensus 404 c~~l~~~~~~~~~~~~~l~~-~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~ 479 (620)
+.... .. ......+.+.. ....+. ......+..+++++.++++++ .+..+..... ..+++|++|+++++.
T Consensus 407 ~~~~~-~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~---~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 407 NGVIT-MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF---NGLSSLEVLKMAGNS 480 (635)
T ss_dssp CSEEE-EC-SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTT---TTCTTCCEEECTTCE
T ss_pred ccccc-cc-ccccccccccchhhhhcccccccccccccccccccccccccc-cccccccccc---ccchhhhhhhhhhcc
Confidence 43222 11 11111222222 000010 011123456677888888776 4444433333 357888888888876
Q ss_pred CcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccc
Q 007039 480 RLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLF 559 (620)
Q Consensus 480 ~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~ 559 (620)
....+ .+..+..+++|++|++++| +++.+. +..... +++|++|+|+++ +++.+. |
T Consensus 481 ~~~~~-~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~------l~~L~~L~Ls~N-~l~~l~---------------~ 535 (635)
T 4g8a_A 481 FQENF-LPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNS------LSSLQVLNMSHN-NFFSLD---------------T 535 (635)
T ss_dssp EGGGE-ECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTT------CTTCCEEECTTS-CCCBCC---------------C
T ss_pred ccccc-CchhhhhccccCEEECCCC-ccCCcC-hHHHcC------CCCCCEEECCCC-cCCCCC---------------h
Confidence 55554 3456778888888888887 455532 333343 678888888876 343332 2
Q ss_pred cccccCCCccEEEeccccchhhhccccccCCcc-cCccEEEeccCc
Q 007039 560 DEKVRLPSLEVLHISEADKLRKIWHHQLASKSF-SKLKKLKISGCN 604 (620)
Q Consensus 560 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~-~sL~~L~i~~C~ 604 (620)
..+..+++|+.|+++++ +|+.+++..+ .++ ++|+.|++.++|
T Consensus 536 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~l--~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLN-HIMTSKKQEL--QHFPSSLAFLNLTQND 578 (635)
T ss_dssp GGGTTCTTCCEEECTTS-CCCBCCSSCT--TCCCTTCCEEECTTCC
T ss_pred hHHhCCCCCCEEECCCC-cCCCCCHHHH--HhhhCcCCEEEeeCCC
Confidence 24567889999999988 6777766543 355 689999997654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=276.11 Aligned_cols=449 Identities=16% Similarity=0.129 Sum_probs=256.2
Q ss_pred CCcEEEEccCCCCc-CCCCcC-CCCCccEEEcccCCCC-----Cc------ccchHHHh---------------------
Q 007039 37 KDPIAISLPHRDIQ-ELPERL-QCPNLQLFLLYTEGNG-----PM------QVSDHFFE--------------------- 82 (620)
Q Consensus 37 ~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~-----~~------~~~~~~~~--------------------- 82 (620)
.+++.|+++++.+. .+|+.. ++++|++|++++|... .. .+|.....
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57899999999884 555544 8999999999888420 00 11111000
Q ss_pred ------------------cCCCCcEEEcC--CCCCCCChhhhhcccCCcEEEccCCCCCC-------------------h
Q 007039 83 ------------------GMEGLKVLQFP--GIGSSSLPSSLGRLINLQTLCLDWCELAD-------------------I 123 (620)
Q Consensus 83 ------------------~l~~Lr~L~l~--~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-------------------~ 123 (620)
....++.+.+. +|++..+|+.++++++|++|++++|.+.. |
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00011111111 23444577777777777777777777654 3
Q ss_pred hhhc--CCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCc-ccc-ccchHHHhCC------cCCcEEEcCCCcccc
Q 007039 124 AAIG--QLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCW-WLE-VIAPNVISKL------SQLEELYMGNGFSGW 192 (620)
Q Consensus 124 ~~i~--~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~-~~~-~~p~~~l~~l------~~L~~L~l~~~~~~~ 192 (620)
..++ ++++|++|++++|.+. .+|..++++++|++|++++|. ... .+|.. ++++ ++|++|++++|.+.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-
Confidence 5666 7777777777777544 677777777777777777776 333 46665 5555 77777777777665
Q ss_pred ccccCCCCcchh--hhcCCCCCCEEEeecCCCC-CCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccc
Q 007039 193 EKVEGGSNASLV--ELERLTELTTLEIEVPDAE-ILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 193 ~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
..+. .++++++|++|++++|... .+| .+ ..+++|+.|++++
T Consensus 319 --------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~------------------------~~l~~L~~L~L~~--- 362 (636)
T 4eco_A 319 --------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AF------------------------GSEIKLASLNLAY--- 362 (636)
T ss_dssp --------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CC------------------------EEEEEESEEECCS---
T ss_pred --------ccCchhhhccCCCCCEEeCcCCcCccchh-hh------------------------CCCCCCCEEECCC---
Confidence 2223 5777777777777777654 444 21 2222333333332
Q ss_pred cccccchhHHHHHhccccceecccccChhhhcccCCcCCCccc-cceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPR-LKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 270 ~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
+... .+... +..+++ |++|+++++. +..++. ......+++|+.|+++
T Consensus 363 ------------------------N~l~-~lp~~---l~~l~~~L~~L~Ls~N~-l~~lp~---~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 363 ------------------------NQIT-EIPAN---FCGFTEQVENLSFAHNK-LKYIPN---IFDAKSVSVMSAIDFS 410 (636)
T ss_dssp ------------------------SEEE-ECCTT---SEEECTTCCEEECCSSC-CSSCCS---CCCTTCSSCEEEEECC
T ss_pred ------------------------Cccc-cccHh---hhhhcccCcEEEccCCc-Ccccch---hhhhcccCccCEEECc
Confidence 1100 01111 223444 5555555543 112211 0011123355555555
Q ss_pred cccCchhhhccCCC----CCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccc
Q 007039 349 FLTNLETICYSQLR----EDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF 424 (620)
Q Consensus 349 ~~~~l~~~~~~~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~ 424 (620)
++.--...+.. +. ..-.+++|+.|++.++ .++.++. ..+..+++|++|+++++. +..++.......
T Consensus 411 ~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~------ 480 (636)
T 4eco_A 411 YNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM-LTEIPKNSLKDE------ 480 (636)
T ss_dssp SSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCSSSSEET------
T ss_pred CCcCCCcchhh-hcccccccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC-CCCcCHHHhccc------
Confidence 54311111111 00 0114668999999886 5566654 355678999999999865 444442110000
Q ss_pred cccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 425 IEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 425 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
......+++|+.|+++++ ++..++..... ..+++|++|+++++ .++.+ +..+..+++|+.|+++++
T Consensus 481 --------~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~--~~l~~L~~L~Ls~N-~l~~i--p~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 481 --------NENFKNTYLLTSIDLRFN-KLTKLSDDFRA--TTLPYLVGIDLSYN-SFSKF--PTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp --------TEECTTGGGCCEEECCSS-CCCBCCGGGST--TTCTTCCEEECCSS-CCSSC--CCGGGGCSSCCEEECCSC
T ss_pred --------cccccccCCccEEECcCC-cCCccChhhhh--ccCCCcCEEECCCC-CCCCc--ChhhhcCCCCCEEECCCC
Confidence 001123459999999998 66666544320 25899999999995 77776 355678999999999764
Q ss_pred cc------ccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccc
Q 007039 505 RS------IEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADK 578 (620)
Q Consensus 505 ~~------l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~ 578 (620)
+. ...+ +..... +++|++|+|+++.- .. +|..+. ++|++|++++|+
T Consensus 547 ~~ls~N~l~~~~--p~~l~~------l~~L~~L~Ls~N~l-~~----------------ip~~~~--~~L~~L~Ls~N~- 598 (636)
T 4eco_A 547 RDAQGNRTLREW--PEGITL------CPSLTQLQIGSNDI-RK----------------VNEKIT--PNISVLDIKDNP- 598 (636)
T ss_dssp BCTTCCBCCCCC--CTTGGG------CSSCCEEECCSSCC-CB----------------CCSCCC--TTCCEEECCSCT-
T ss_pred cccccCcccccC--hHHHhc------CCCCCEEECCCCcC-Cc----------------cCHhHh--CcCCEEECcCCC-
Confidence 42 2222 333333 78899999988742 33 344433 799999999995
Q ss_pred hhhhccccc------cCCcccCccEEEeccCcCcc
Q 007039 579 LRKIWHHQL------ASKSFSKLKKLKISGCNNLL 607 (620)
Q Consensus 579 L~~l~~~~~------~~~~~~sL~~L~i~~C~~l~ 607 (620)
++.+....+ ....+.-.+..+|.+|+++.
T Consensus 599 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 599 NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 433321111 01122334556888999875
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=266.80 Aligned_cols=470 Identities=13% Similarity=0.040 Sum_probs=248.3
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
.+...++++++++.. ..+|..+ .++|++|++++|.+..++ ..++++++|++|++++|.+.. +..|+++++|+
T Consensus 29 ~~~~~~~l~ls~~~L--~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNL--THVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCC--CSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCC--ccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 344446666666665 4566543 266777777777766654 466677777777777777665 45667777777
Q ss_pred EEecCCCCCCCCChhccCCCCCCEEeCCCCccccccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCC
Q 007039 134 ILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (620)
Q Consensus 134 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (620)
+|++++|.++.+|.. .+++|++|++++|. +..++. ..++++++|++|+++++.+. ...+..+.++ +|
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~--------~~~~~~l~~L-~L 171 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR--------QLDLLPVAHL-HL 171 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC--------TTTTGGGTTS-CE
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc--------cCchhhhhhc-ee
Confidence 777777777777665 67777777777766 454431 23677777777777776654 1122333333 33
Q ss_pred CEEEeecCCC--CCC-CCcccccCceEEEEE--eCCCCCCCCCccccccccccEEEEecccc-cccccchhHHHHHhccc
Q 007039 213 TTLEIEVPDA--EIL-PPDFVSVELQRYKIR--IGDGPEDEFDPLLVKSEASRLMMLKGIKK-VSILQENDGTKMLLQRT 286 (620)
Q Consensus 213 ~~L~l~~~~~--~~~-~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~i~~~~~~~~~l~~L 286 (620)
++|++++|.. ... +..+..-..+.+.+. .+....+.........++|+.++++++.. +..+.........++++
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 7777777655 222 222222122333332 22222222222244566777777776321 01111111111123455
Q ss_pred cceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCch-hhhccCCCCCC
Q 007039 287 EDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQ 365 (620)
Q Consensus 287 ~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~ 365 (620)
+.|.+.++.........+......++|++|+++++.-...++.... ....++|+.|.+.++..-. .++...+...-
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~---~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF---TYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC---CCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh---hcccccchheehhhcccceeecChhhhhhhh
Confidence 5555544332111111110011234777777777641111111000 0001344444433322110 11100000000
Q ss_pred cCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE
Q 007039 366 SFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL 445 (620)
Q Consensus 366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 445 (620)
..++|++|++.++.- ..... ...+++|++|+++++.--...+ ..+..+++|+.|
T Consensus 329 ~~~~L~~L~l~~n~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L 382 (562)
T 3a79_B 329 AEMNIKMLSISDTPF-IHMVC---PPSPSSFTFLNFTQNVFTDSVF----------------------QGCSTLKRLQTL 382 (562)
T ss_dssp HTCCCSEEEEESSCC-CCCCC---CSSCCCCCEEECCSSCCCTTTT----------------------TTCCSCSSCCEE
T ss_pred ccCcceEEEccCCCc-ccccC---ccCCCCceEEECCCCccccchh----------------------hhhcccCCCCEE
Confidence 124577777777542 22211 1356777777777754322121 223557888888
Q ss_pred ecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeec
Q 007039 446 ELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVF 525 (620)
Q Consensus 446 ~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~ 525 (620)
+++++ .++.++... ..+..+++|++|+++++ .++...+...+..+++|++|++++|.--..+ +.. +
T Consensus 383 ~L~~N-~l~~~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~---------l 448 (562)
T 3a79_B 383 ILQRN-GLKNFFKVA-LMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRC---------L 448 (562)
T ss_dssp ECCSS-CCCBTTHHH-HTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGG--GSS---------C
T ss_pred ECCCC-CcCCcccch-hhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcch--hhh---------h
Confidence 88887 555442210 11235788888888885 5555224455677788888888887522211 111 2
Q ss_pred -cccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCc
Q 007039 526 -PKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCN 604 (620)
Q Consensus 526 -~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~ 604 (620)
++|+.|+++++ .++ ++|.....+++|++|+++++ .++.+|... +..+++|++|++.++|
T Consensus 449 ~~~L~~L~L~~N-~l~----------------~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 449 PPKVKVLDLHNN-RIM----------------SIPKDVTHLQALQELNVASN-QLKSVPDGV--FDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCSEEECCSS-CCC----------------CCCTTTTSSCCCSEEECCSS-CCCCCCTTS--TTTCTTCCCEECCSCC
T ss_pred cCcCCEEECCCC-cCc----------------ccChhhcCCCCCCEEECCCC-CCCCCCHHH--HhcCCCCCEEEecCCC
Confidence 47888888776 333 45666678899999999998 688887763 4578999999999876
Q ss_pred Cc
Q 007039 605 NL 606 (620)
Q Consensus 605 ~l 606 (620)
--
T Consensus 509 ~~ 510 (562)
T 3a79_B 509 WD 510 (562)
T ss_dssp BC
T ss_pred cC
Confidence 43
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=261.59 Aligned_cols=450 Identities=12% Similarity=0.052 Sum_probs=286.4
Q ss_pred chhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhh
Q 007039 26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 26 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 103 (620)
+...+|. ++++++++|++++|.+..+++ ..++++|++|++++|.+ ..+++..+.++++|++|++++|.+..+|..
T Consensus 11 ~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 87 (520)
T 2z7x_B 11 GLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH 87 (520)
T ss_dssp CCSSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred Ccccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc
Confidence 3444443 456899999999999988864 34899999999999998 556555569999999999999999999876
Q ss_pred hhcccCCcEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCC--CEEeCCCCcc--ccccchHHHhC
Q 007039 104 LGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVISK 176 (620)
Q Consensus 104 ~~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~l~~ 176 (620)
.+++|++|++++|.+.. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|.. +..
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~ 162 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQD 162 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTT
T ss_pred --ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccc
Confidence 89999999999999875 5899999999999999998886 457778888 9999999984 3444544 666
Q ss_pred Cc-CCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccc
Q 007039 177 LS-QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVK 255 (620)
Q Consensus 177 l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 255 (620)
+. +.-.+++.++.+.. ......+.++++|+.+++++|........+. .. .+.+..
T Consensus 163 l~~~~l~l~l~~n~~~~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~----------------~~~l~~ 218 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFH-------FILDVSVKTVANLELSNIKCVLEDNKCSYFL-SI----------------LAKLQT 218 (520)
T ss_dssp CCEEEEEEECCSSSCCC-------CCCCCCCTTCSEEEECCEEECCSTTTTHHHH-HH----------------HHGGGG
T ss_pred cccceEEEEeccCcchh-------hhhhhhhhcccceeeccccccccccccceee-cc----------------hhhhcc
Confidence 55 23345666666542 1222456678899999998875210000000 00 011344
Q ss_pred cccccEEEEecccccccccc--hhHHH--HHhccccceecccccChhhhcccCCc--CCCccccceEEeccCCCceEeee
Q 007039 256 SEASRLMMLKGIKKVSILQE--NDGTK--MLLQRTEDLWLETLEGVQSVVHELDD--GEGFPRLKRLLVTDCSEILHIVG 329 (620)
Q Consensus 256 ~~~L~~L~l~~~~~~~~i~~--~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~ 329 (620)
.++++.|.+.++ .+.. ..++. ...++|++|++.++.....+...+.. .+.+++|+.++++++.- .++.
T Consensus 219 l~~L~~L~l~~~----~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~ 292 (520)
T 2z7x_B 219 NPKLSNLTLNNI----ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ 292 (520)
T ss_dssp CTTCCEEEEEEE----EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT
T ss_pred ccchhhcccccc----ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch
Confidence 455566665552 2211 11111 11347888888766533222222200 14677888888877642 1110
Q ss_pred cccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccc
Q 007039 330 SVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (620)
Q Consensus 330 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 409 (620)
... .....-++|+.|+++++. +..... ...+++|++|++.+|. ++...+ ..+.++++|++|++++|.. ..
T Consensus 293 ~~~-~~~~~~~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l-~~ 362 (520)
T 2z7x_B 293 SYI-YEIFSNMNIKNFTVSGTR-MVHMLC-----PSKISPFLHLDFSNNL-LTDTVF-ENCGHLTELETLILQMNQL-KE 362 (520)
T ss_dssp HHH-HHHHHTCCCSEEEEESSC-CCCCCC-----CSSCCCCCEEECCSSC-CCTTTT-TTCCCCSSCCEEECCSSCC-CB
T ss_pred hhh-hcccccCceeEEEcCCCc-cccccc-----hhhCCcccEEEeECCc-cChhhh-hhhccCCCCCEEEccCCcc-Cc
Confidence 000 000011458888888765 222211 2567888888888864 443222 2346788888888887653 32
Q ss_pred ccccCCCCCCCCccccccccCCCCccccccCccceEecCCcccccc-ccccCCccccccCCccEEEEecCCCcceecchh
Q 007039 410 IIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKK-LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYS 488 (620)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 488 (620)
+... +..+..+++|++|+++++ .+.. ++...+ ..+++|++|++++| .++...+
T Consensus 363 l~~~-------------------~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~---~~l~~L~~L~Ls~N-~l~~~~~-- 416 (520)
T 2z7x_B 363 LSKI-------------------AEMTTQMKSLQQLDISQN-SVSYDEKKGDC---SWTKSLLSLNMSSN-ILTDTIF-- 416 (520)
T ss_dssp HHHH-------------------HHHHTTCTTCCEEECCSS-CCBCCGGGCSC---CCCTTCCEEECCSS-CCCGGGG--
T ss_pred cccc-------------------hHHHhhCCCCCEEECCCC-cCCcccccchh---ccCccCCEEECcCC-CCCcchh--
Confidence 1100 012355788888888887 4444 554433 35788888888886 4543321
Q ss_pred hhccc-CcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccc-cccCC
Q 007039 489 MVNSL-GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDE-KVRLP 566 (620)
Q Consensus 489 ~~~~l-~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~-~~~l~ 566 (620)
..+ ++|+.|++++| .++.+ +..... +++|++|+++++ .++.+ |.. +..++
T Consensus 417 --~~l~~~L~~L~Ls~N-~l~~i--p~~~~~------l~~L~~L~L~~N-~l~~l----------------~~~~~~~l~ 468 (520)
T 2z7x_B 417 --RCLPPRIKVLDLHSN-KIKSI--PKQVVK------LEALQELNVASN-QLKSV----------------PDGIFDRLT 468 (520)
T ss_dssp --GSCCTTCCEEECCSS-CCCCC--CGGGGG------CTTCCEEECCSS-CCCCC----------------CTTTTTTCT
T ss_pred --hhhcccCCEEECCCC-ccccc--chhhhc------CCCCCEEECCCC-cCCcc----------------CHHHhccCC
Confidence 222 68888888887 45544 333223 778888888877 34443 333 56788
Q ss_pred CccEEEecccc
Q 007039 567 SLEVLHISEAD 577 (620)
Q Consensus 567 ~L~~L~i~~C~ 577 (620)
+|++|++++++
T Consensus 469 ~L~~L~l~~N~ 479 (520)
T 2z7x_B 469 SLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECcCCC
Confidence 99999998875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=272.75 Aligned_cols=392 Identities=14% Similarity=0.116 Sum_probs=249.1
Q ss_pred CCcEEEEccCCCCc-CCCCcC-CCCCccEEEc-ccCCC------C-----------------------------------
Q 007039 37 KDPIAISLPHRDIQ-ELPERL-QCPNLQLFLL-YTEGN------G----------------------------------- 72 (620)
Q Consensus 37 ~~lr~L~l~~~~~~-~l~~~~-~~~~Lr~L~l-~~~~~------~----------------------------------- 72 (620)
.+++.|+++++.+. .+|+.. ++++|++|++ ++|.. .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 67999999999995 566555 9999999999 55521 0
Q ss_pred ----------------------------------CcccchHHHhcCCCCcEEEcCCCCCCC------------------C
Q 007039 73 ----------------------------------PMQVSDHFFEGMEGLKVLQFPGIGSSS------------------L 100 (620)
Q Consensus 73 ----------------------------------~~~~~~~~~~~l~~Lr~L~l~~~~~~~------------------l 100 (620)
...+|.. +.++++|++|++++|.+.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0016655 4788999999999999887 8
Q ss_pred hhhhh--cccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCC-CCC--CChhccCCC-------CCCEEeCCCCccc
Q 007039 101 PSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSN-INQ--LPVEIGQLT-------RLQLLDLSNCWWL 166 (620)
Q Consensus 101 p~~~~--~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~ 166 (620)
|+.++ ++++|++|++++|.+.. |..++++++|++|++++|. ++. +|..+++++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 88877 89999999999988654 7888999999999999996 774 887777665 89999999988 5
Q ss_pred cccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cC-ceEEEEEeCC
Q 007039 167 EVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VE-LQRYKIRIGD 243 (620)
Q Consensus 167 ~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~~ 243 (620)
..+|. ..++++++|++|++++|.+. .. ..++++++|+.|++++|....+|..+.. ++ |+.|.+..+.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~---------~l-p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR---------HL-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC---------BC-CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc---------cc-hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 68887 23889999999999888765 12 2678888899999998888888877665 66 8888886554
Q ss_pred CCCCCCCcccccc--ccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCC--CccccceEEec
Q 007039 244 GPEDEFDPLLVKS--EASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGE--GFPRLKRLLVT 319 (620)
Q Consensus 244 ~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~--~~~~L~~L~l~ 319 (620)
..... ..+... ++|+.|++++ +.....+........ ..++|+.|+++
T Consensus 631 L~~lp--~~~~~~~~~~L~~L~Ls~---------------------------N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 631 LKYIP--NIFNAKSVYVMGSVDFSY---------------------------NKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp CCSCC--SCCCTTCSSCEEEEECCS---------------------------SCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCcCc--hhhhccccCCCCEEECcC---------------------------CcCCCccccchhhhccccCCCcCEEEcc
Confidence 33111 112222 2255555555 322111100000011 23467777777
Q ss_pred cCCCceEeeecccccccccccccchhccccccCchhhhccCCCC----CCcCCCCcEEEeecCCCceeecchhHHH--Hh
Q 007039 320 DCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE----DQSFSNLRIINVDSCRKLKYLFSFSMAK--NL 393 (620)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~l 393 (620)
++. +..++. .....+++|+.|+++++ .+..++...... ...+++|+.|++.+| .++.+|.. +. .+
T Consensus 682 ~N~-L~~lp~----~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~--l~~~~l 752 (876)
T 4ecn_A 682 YNE-IQKFPT----ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD--FRATTL 752 (876)
T ss_dssp SSC-CCSCCH----HHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG--GSTTTC
T ss_pred CCc-CCccCH----HHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHH--hhhccC
Confidence 664 222211 01224567777777664 344444322110 112347778888776 55555432 33 67
Q ss_pred cccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccc--cccccCCccccccCCcc
Q 007039 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIK--KLWSDQFQGIYCCQNLT 471 (620)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~~l~~L~ 471 (620)
++|+.|+++++. +..++ .....+++|+.|++++++.+. .+.......+..+++|+
T Consensus 753 ~~L~~L~Ls~N~-L~~lp----------------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 753 PYLSNMDVSYNC-FSSFP----------------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp TTCCEEECCSSC-CSSCC----------------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CCcCEEEeCCCC-CCccc----------------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 788888877753 33332 224467778888877643111 11111122344677888
Q ss_pred EEEEecCCCcceecchhhhcccCcccEEEEccccc
Q 007039 472 KVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRS 506 (620)
Q Consensus 472 ~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 506 (620)
+|++++| .+..++ .. + .++|+.|+|++|+-
T Consensus 810 ~L~Ls~N-~L~~Ip-~~-l--~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 810 QLQIGSN-DIRKVD-EK-L--TPQLYILDIADNPN 839 (876)
T ss_dssp EEECCSS-CCCBCC-SC-C--CSSSCEEECCSCTT
T ss_pred EEECCCC-CCCccC-Hh-h--cCCCCEEECCCCCC
Confidence 8888875 456663 22 2 26788888888763
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=264.82 Aligned_cols=421 Identities=14% Similarity=0.104 Sum_probs=292.8
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-------------CChhh---------------------h
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-------------SLPSS---------------------L 104 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-------------~lp~~---------------------~ 104 (620)
.+++.|++.++.. .+.+|..+ +++++|++|++++|.+. .+|.. +
T Consensus 81 ~~V~~L~L~~~~l-~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGA-SGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCC-EEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCccc-CCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence 5788999999988 67788765 89999999999999641 11111 1
Q ss_pred h-------------------cccCCcEEEcc--CCCCCC-hhhhcCCCCCCEEecCCCCCCC------------------
Q 007039 105 G-------------------RLINLQTLCLD--WCELAD-IAAIGQLKKLEILSLAYSNINQ------------------ 144 (620)
Q Consensus 105 ~-------------------~l~~L~~L~L~--~~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------ 144 (620)
. ....++.+.+. .|.+.. |..++++++|++|++++|.++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 1 00111112221 344556 7789999999999999999998
Q ss_pred CChhcc--CCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc-cccccccCCCCcchhhhcCC------CCCCEE
Q 007039 145 LPVEIG--QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF-SGWEKVEGGSNASLVELERL------TELTTL 215 (620)
Q Consensus 145 lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l------~~L~~L 215 (620)
+|..++ ++++|++|++++|...+.+|.. ++++++|++|++++|. +.+ ...+..++++ ++|++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~-------~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISG-------EQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCH-------HHHHHHHHHHHHSGGGGTCCEE
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCcc-------ccchHHHHhhhccccCCCCCEE
Confidence 999999 9999999999999877888876 9999999999999997 652 0233455554 999999
Q ss_pred EeecCCCCCCCC--cccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceeccc
Q 007039 216 EIEVPDAEILPP--DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293 (620)
Q Consensus 216 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~ 293 (620)
++++|....+|. . +..+++|+.|++++
T Consensus 311 ~L~~n~l~~ip~~~~------------------------l~~l~~L~~L~L~~--------------------------- 339 (636)
T 4eco_A 311 YIGYNNLKTFPVETS------------------------LQKMKKLGMLECLY--------------------------- 339 (636)
T ss_dssp ECCSSCCSSCCCHHH------------------------HTTCTTCCEEECCS---------------------------
T ss_pred ECCCCcCCccCchhh------------------------hccCCCCCEEeCcC---------------------------
Confidence 999998776665 4 22333333333333
Q ss_pred ccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccc-cchhccccccCchhhhccCCCCCCcCCCCcE
Q 007039 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPL-LEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (620)
Q Consensus 294 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 372 (620)
+.....+. .++.+++|++|+++++. +..++ .....+++ |+.|+++++. ++.++.. +. ...+++|+.
T Consensus 340 N~l~g~ip----~~~~l~~L~~L~L~~N~-l~~lp-----~~l~~l~~~L~~L~Ls~N~-l~~lp~~-~~-~~~l~~L~~ 406 (636)
T 4eco_A 340 NQLEGKLP----AFGSEIKLASLNLAYNQ-ITEIP-----ANFCGFTEQVENLSFAHNK-LKYIPNI-FD-AKSVSVMSA 406 (636)
T ss_dssp CCCEEECC----CCEEEEEESEEECCSSE-EEECC-----TTSEEECTTCCEEECCSSC-CSSCCSC-CC-TTCSSCEEE
T ss_pred CcCccchh----hhCCCCCCCEEECCCCc-ccccc-----HhhhhhcccCcEEEccCCc-Ccccchh-hh-hcccCccCE
Confidence 22111111 24578999999999984 33332 14567788 9999999865 5555432 11 223558999
Q ss_pred EEeecCCCceeecchhHHH-------HhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE
Q 007039 373 INVDSCRKLKYLFSFSMAK-------NLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL 445 (620)
Q Consensus 373 L~l~~c~~l~~~~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L 445 (620)
|++.++.--...|. .+. .+++|++|+++++. +..++. .....+++|+.|
T Consensus 407 L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~---------------------~~~~~l~~L~~L 462 (636)
T 4eco_A 407 IDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQ-ISKFPK---------------------ELFSTGSPLSSI 462 (636)
T ss_dssp EECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSC-CCSCCT---------------------HHHHTTCCCSEE
T ss_pred EECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCc-cCcCCH---------------------HHHccCCCCCEE
Confidence 99998743222211 122 56799999999864 333331 123458999999
Q ss_pred ecCCccccccccccCCcc----ccccCCccEEEEecCCCcceecchhhhc--ccCcccEEEEcccccccccccccccCCc
Q 007039 446 ELVSLTNIKKLWSDQFQG----IYCCQNLTKVTVWSCHRLKYLFSYSMVN--SLGQLQHLEIRNCRSIEGVVNTTTLGGR 519 (620)
Q Consensus 446 ~l~~~~~l~~l~~~~~~~----~~~l~~L~~L~i~~C~~L~~l~~~~~~~--~l~~L~~L~i~~C~~l~~~~~~~~~~~~ 519 (620)
+++++ .+..++...... ...+++|++|+++++ .++.++ ..+. .+++|++|+++++. ++.+ +.....
T Consensus 463 ~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~~~~~~l~~L~~L~Ls~N~-l~~i--p~~~~~- 534 (636)
T 4eco_A 463 NLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLS--DDFRATTLPYLVGIDLSYNS-FSKF--PTQPLN- 534 (636)
T ss_dssp ECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCC--GGGSTTTCTTCCEEECCSSC-CSSC--CCGGGG-
T ss_pred ECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccC--hhhhhccCCCcCEEECCCCC-CCCc--Chhhhc-
Confidence 99998 666776654431 123449999999995 788773 4454 89999999999965 4443 444444
Q ss_pred cceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEE
Q 007039 520 DEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLK 599 (620)
Q Consensus 520 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~ 599 (620)
+++|+.|+++++..+.. ..-...+|..+..+++|++|++++|. ++.+|.. + +++|++|+
T Consensus 535 -----l~~L~~L~Ls~N~~ls~----------N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~----~~~L~~L~ 593 (636)
T 4eco_A 535 -----SSTLKGFGIRNQRDAQG----------NRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-I----TPNISVLD 593 (636)
T ss_dssp -----CSSCCEEECCSCBCTTC----------CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-C----CTTCCEEE
T ss_pred -----CCCCCEEECCCCccccc----------CcccccChHHHhcCCCCCEEECCCCc-CCccCHh-H----hCcCCEEE
Confidence 88999999987763322 12234567788899999999999994 6888765 2 28999999
Q ss_pred eccCcCc
Q 007039 600 ISGCNNL 606 (620)
Q Consensus 600 i~~C~~l 606 (620)
+++|+-.
T Consensus 594 Ls~N~l~ 600 (636)
T 4eco_A 594 IKDNPNI 600 (636)
T ss_dssp CCSCTTC
T ss_pred CcCCCCc
Confidence 9999744
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=266.47 Aligned_cols=450 Identities=14% Similarity=0.069 Sum_probs=264.1
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEc-CCCCCCCC-hh----------------------------------
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQF-PGIGSSSL-PS---------------------------------- 102 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l-~~~~~~~l-p~---------------------------------- 102 (620)
.++..|++.++.. .+.+|+.+ +++++|++|++ ++|.+... |.
T Consensus 323 ~~V~~L~Ls~~~L-~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFGA-KGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTCC-EEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCCC-CCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 5788999999988 67788775 89999999999 66642110 00
Q ss_pred ------hh-----------hcccCCcEEEccC--CCCCC-hhhhcCCCCCCEEecCCCCCCC------------------
Q 007039 103 ------SL-----------GRLINLQTLCLDW--CELAD-IAAIGQLKKLEILSLAYSNINQ------------------ 144 (620)
Q Consensus 103 ------~~-----------~~l~~L~~L~L~~--~~~~~-~~~i~~L~~L~~L~l~~~~l~~------------------ 144 (620)
.+ .....++.+.+.. |.+.. |..++++++|++|++++|.++.
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 0111122222222 33444 5667777777777777777776
Q ss_pred CChhcc--CCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc-cccccccCCCCcchhhhc-------CCCCCCE
Q 007039 145 LPVEIG--QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF-SGWEKVEGGSNASLVELE-------RLTELTT 214 (620)
Q Consensus 145 lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~-------~l~~L~~ 214 (620)
+|..++ ++++|++|++++|...+.+|.. ++++++|+.|++++|. +.+ ...+..++ .+++|+.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg-------~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISA-------AQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCH-------HHHHHHHHHHHHCTTTTTTCCE
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCccc-------ccchHHHHhhhhcccccCCccE
Confidence 777776 7777888887777766667755 7777778888777776 542 01122233 3447777
Q ss_pred EEeecCCCCCCCC--cccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceec
Q 007039 215 LEIEVPDAEILPP--DFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL 291 (620)
Q Consensus 215 L~l~~~~~~~~~~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l 291 (620)
|++++|....+|. .+.. ++|+.|.+..+... ..|.+..+++|+.|++++
T Consensus 553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~~L~~L~Ls~------------------------- 604 (876)
T 4ecn_A 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDY------------------------- 604 (876)
T ss_dssp EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTSEESEEECCS-------------------------
T ss_pred EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCCcceEEECcC-------------------------
Confidence 7777777766666 4444 66666666433322 111233444444444444
Q ss_pred ccccChhhhcccCCcCCCccc-cceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCC--cCC
Q 007039 292 ETLEGVQSVVHELDDGEGFPR-LKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQ--SFS 368 (620)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~~ 368 (620)
+... .+... +..+++ |+.|+++++. +..++. .......++|+.|+++++.--..++... ...+ .++
T Consensus 605 --N~l~-~lp~~---l~~l~~~L~~L~Ls~N~-L~~lp~---~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-~~l~~~~~~ 673 (876)
T 4ecn_A 605 --NQIE-EIPED---FCAFTDQVEGLGFSHNK-LKYIPN---IFNAKSVYVMGSVDFSYNKIGSEGRNIS-CSMDDYKGI 673 (876)
T ss_dssp --SCCS-CCCTT---SCEECTTCCEEECCSSC-CCSCCS---CCCTTCSSCEEEEECCSSCTTTTSSSCS-SCTTTCCCC
T ss_pred --Cccc-cchHH---HhhccccCCEEECcCCC-CCcCch---hhhccccCCCCEEECcCCcCCCccccch-hhhccccCC
Confidence 3221 22222 335666 7788887774 323321 0112223447777777754221111100 0012 345
Q ss_pred CCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecC
Q 007039 369 NLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELV 448 (620)
Q Consensus 369 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 448 (620)
+|+.|++.+| .++.+|. ..+..+++|++|+++++ .+..++...... ......++++|+.|+++
T Consensus 674 ~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~--------------~~~~l~nl~~L~~L~Ls 736 (876)
T 4ecn_A 674 NASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKP--------------KDGNYKNTYLLTTIDLR 736 (876)
T ss_dssp CEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSC--------------TTSCCTTGGGCCEEECC
T ss_pred CcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhcc--------------ccccccccCCccEEECC
Confidence 8999999986 5566543 45568899999999986 444444211000 00112346699999999
Q ss_pred CccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccc-----cccccccccCCcccee
Q 007039 449 SLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSI-----EGVVNTTTLGGRDEFK 523 (620)
Q Consensus 449 ~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l-----~~~~~~~~~~~~~~~~ 523 (620)
+| ++..++..... ..+++|+.|+++++ .++.+ +..+..+++|+.|++++++.+ ... .+.....
T Consensus 737 ~N-~L~~lp~~l~~--~~l~~L~~L~Ls~N-~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~----- 804 (876)
T 4ecn_A 737 FN-KLTSLSDDFRA--TTLPYLSNMDVSYN-CFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITT----- 804 (876)
T ss_dssp SS-CCCCCCGGGST--TTCTTCCEEECCSS-CCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGG-----
T ss_pred CC-CCccchHHhhh--ccCCCcCEEEeCCC-CCCcc--chhhhcCCCCCEEECCCCCCccccccccc-ChHHHhc-----
Confidence 98 67766544320 25899999999995 77776 345779999999999875422 111 1333333
Q ss_pred eccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcccccc------CCcccCccE
Q 007039 524 VFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLA------SKSFSKLKK 597 (620)
Q Consensus 524 ~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~------~~~~~sL~~ 597 (620)
+++|+.|+|+++.- .. +|..+. ++|+.|++++|+ +..+....+. ...+..-+.
T Consensus 805 -L~~L~~L~Ls~N~L-~~----------------Ip~~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 805 -CPSLIQLQIGSNDI-RK----------------VDEKLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp -CSSCCEEECCSSCC-CB----------------CCSCCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTT
T ss_pred -CCCCCEEECCCCCC-Cc----------------cCHhhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCc
Confidence 78899999888742 43 344432 689999999996 4443222110 111222233
Q ss_pred EEeccCcCcc
Q 007039 598 LKISGCNNLL 607 (620)
Q Consensus 598 L~i~~C~~l~ 607 (620)
.+|.+|+++.
T Consensus 864 ~~I~gC~~L~ 873 (876)
T 4ecn_A 864 QDIRGCDALG 873 (876)
T ss_dssp SEEESCGGGC
T ss_pred cccCCCCCcc
Confidence 4678898874
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=248.69 Aligned_cols=342 Identities=16% Similarity=0.196 Sum_probs=230.5
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++|+|++.++.+..++....+++|++|++++|.. ..++. +..+++|++|++++|.+..++. ++++++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 567888888888888777666788888888888877 55555 5788888888888888888776 888888888888
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.+...+.++++|++|++++|.+..+| .++++++|++|++.++ ...++. +.++++|++|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS---- 190 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC----
Confidence 8888877434888888888888888888776 4788888888888642 344444 788888888888887765
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE 275 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~ 275 (620)
.+..+.++++|++|+++++.....+. +..+++|+.|++++
T Consensus 191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~-------------------------~~~l~~L~~L~l~~--------- 230 (466)
T 1o6v_A 191 ------DISVLAKLTNLESLIATNNQISDITP-------------------------LGILTNLDELSLNG--------- 230 (466)
T ss_dssp ------CCGGGGGCTTCSEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCS---------
T ss_pred ------CChhhccCCCCCEEEecCCccccccc-------------------------ccccCCCCEEECCC---------
Confidence 22457778888888888776544332 22233344444433
Q ss_pred hhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchh
Q 007039 276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355 (620)
Q Consensus 276 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 355 (620)
+... . ++.+..+++|++|+++++. +..+. ....+++|+.|+++++. +..
T Consensus 231 ------------------n~l~-~----~~~l~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~l~~n~-l~~ 279 (466)
T 1o6v_A 231 ------------------NQLK-D----IGTLASLTNLTDLDLANNQ-ISNLA------PLSGLTKLTELKLGANQ-ISN 279 (466)
T ss_dssp ------------------SCCC-C----CGGGGGCTTCSEEECCSSC-CCCCG------GGTTCTTCSEEECCSSC-CCC
T ss_pred ------------------CCcc-c----chhhhcCCCCCEEECCCCc-cccch------hhhcCCCCCEEECCCCc-cCc
Confidence 1100 0 0112345666666666653 11111 24455666666666543 222
Q ss_pred hhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCcc
Q 007039 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVH 435 (620)
Q Consensus 356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 435 (620)
++. ...+++|+.|++.+| .++.+++ +..+++|++|++++|. +..+. +
T Consensus 280 ~~~-----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-----------------------~ 326 (466)
T 1o6v_A 280 ISP-----LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDIS-----------------------P 326 (466)
T ss_dssp CGG-----GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCG-----------------------G
T ss_pred ccc-----ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCch-----------------------h
Confidence 221 345778888888875 4555544 4678888888888864 33322 1
Q ss_pred ccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccc
Q 007039 436 QVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 436 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
...+++|+.|++++| .+..+ ..+..+++|+.|++++| .++...+ +..+++|+.|++++|+
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDV-----SSLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred hccCccCCEeECCCC-ccCCc-----hhhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 356788888888888 55554 23346888999999886 5666633 6788889999998876
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=252.25 Aligned_cols=514 Identities=14% Similarity=0.082 Sum_probs=318.8
Q ss_pred EccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCC
Q 007039 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELA 121 (620)
Q Consensus 43 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~ 121 (620)
+=++..+..+|+... +++++|++++|.+ ..++...|.++++|++|++++|.+..+|+ +|+++++|++|+|++|.+.
T Consensus 37 ~c~~~~l~~vP~~lp-~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcCccCCCCC-cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 334445677775431 4799999999998 77887778999999999999999998864 7899999999999999998
Q ss_pred C-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCcccccc--chHHHhCCcCCcEEEcCCCcccccccc
Q 007039 122 D-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVI--APNVISKLSQLEELYMGNGFSGWEKVE 196 (620)
Q Consensus 122 ~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~--p~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (620)
. + ..|+++++|++|++++|.++.+|.. ++++++|++|++++|. +..+ |. .++.+++|++|++++|.+....+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~- 190 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYC- 190 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCG-GGGGCTTCCEEECCSSCCCEECG-
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCch-hhccchhhhhhcccCcccccccc-
Confidence 8 4 6789999999999999999998764 8999999999999998 5443 44 38899999999999998763221
Q ss_pred CCCCcchhhhcCCCC-CCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc--ccccc
Q 007039 197 GGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI--KKVSI 272 (620)
Q Consensus 197 ~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~ 272 (620)
..+..+.+++. ...++++.+....++..... ..++.+.+.............+.....++...+... .....
T Consensus 191 ----~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 191 ----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp ----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ----ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 23444555443 44678888877766665544 555566654321100000001223333433333221 11111
Q ss_pred ccchh-HHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcccccc
Q 007039 273 LQEND-GTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351 (620)
Q Consensus 273 i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 351 (620)
+.... ........+....+...............+..+.+++.+.+.++.. ..+ ........|+.|++.++.
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~------~~~~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ERV------KDFSYNFGWQHLELVNCK 339 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EEC------GGGGSCCCCSEEEEESCE
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-ccc------cccccchhhhhhhccccc
Confidence 11000 0000112222222211111001111111133566777777776642 111 134455678888887764
Q ss_pred CchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccc-cCCCCCCCCccccccccC
Q 007039 352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG-PDMEKPPTTQGFIEINAE 430 (620)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~l~~~~~~~~~ 430 (620)
+..+ . ...++.|+.+.+.+...- ..+. ...+++|+.+++++......... ........+.........
T Consensus 340 -~~~~-----~-~~~l~~L~~l~l~~n~~~-~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 340 -FGQF-----P-TLKLKSLKRLTFTSNKGG-NAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp -ESSC-----C-CCBCTTCCEEEEESCCSC-CBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred -ccCc-----C-cccchhhhhcccccccCC-CCcc---cccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 2221 1 345788888888875432 2222 13678999998877543221110 001111122110000000
Q ss_pred --CCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccccccc
Q 007039 431 --DDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIE 508 (620)
Q Consensus 431 --~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 508 (620)
........+++|+.+++.++..........+ ..+++++.++++.+ .++.. ....+..+++|+.|+++++....
T Consensus 409 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~---~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF---LSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp EEEECSCCTTCTTCCEEECTTSEEESTTSSCTT---TTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGG
T ss_pred cccccccccccccccchhhhhcccccccccccc---cccccccccccccc-ccccc-cccccccchhhhhhhhhhccccc
Confidence 0112345678888888888754443332222 46889999999884 66665 35667889999999999987665
Q ss_pred ccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcccccc
Q 007039 509 GVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLA 588 (620)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 588 (620)
.+ .++.... +++|+.|+|+++ +|+.+. |..+..+++|++|+++++ +|+.++...
T Consensus 484 ~~-~~~~~~~------l~~L~~L~Ls~N-~L~~l~---------------~~~f~~l~~L~~L~Ls~N-~l~~l~~~~-- 537 (635)
T 4g8a_A 484 NF-LPDIFTE------LRNLTFLDLSQC-QLEQLS---------------PTAFNSLSSLQVLNMSHN-NFFSLDTFP-- 537 (635)
T ss_dssp GE-ECSCCTT------CTTCCEEECTTS-CCCEEC---------------TTTTTTCTTCCEEECTTS-CCCBCCCGG--
T ss_pred cc-Cchhhhh------ccccCEEECCCC-ccCCcC---------------hHHHcCCCCCCEEECCCC-cCCCCChhH--
Confidence 43 2444444 789999999988 455432 345678899999999999 688886654
Q ss_pred CCcccCccEEEeccCcCcccccchhhhh
Q 007039 589 SKSFSKLKKLKISGCNNLLNIFPPLVRL 616 (620)
Q Consensus 589 ~~~~~sL~~L~i~~C~~l~~~~p~~~~~ 616 (620)
+.++++|+.|+++++ ++..+.|..++.
T Consensus 538 ~~~l~~L~~L~Ls~N-~l~~~~~~~l~~ 564 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLN-HIMTSKKQELQH 564 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCBCCSSCTTC
T ss_pred HhCCCCCCEEECCCC-cCCCCCHHHHHh
Confidence 458899999999887 455555555543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=248.19 Aligned_cols=453 Identities=16% Similarity=0.134 Sum_probs=290.0
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 117 (620)
.++++++++.+..+|.... ++|++|++++|.+ ..++...+.++++|++|++++|.+..+ |..|+++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 4899999999999887543 8999999999998 667665679999999999999999886 67899999999999999
Q ss_pred CCCCC-hhhhcCCCCCCEEecCCCCCCCCC--hhccCCCCCCEEeCCCCccccccchHHHhCCcCC--cEEEcCCCcc--
Q 007039 118 CELAD-IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFS-- 190 (620)
Q Consensus 118 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L--~~L~l~~~~~-- 190 (620)
|.+.. |.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... +..+++| ++|++++|.+
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccc
Confidence 99988 554 8999999999999998764 789999999999999987 44432 5556666 9999999877
Q ss_pred ccccccCCCCcchhhhcCCCC-CCEEEeecCCCCCC-CCcccc--cCceEEEEEeCCCC-C--CCCCccccccccccEEE
Q 007039 191 GWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEIL-PPDFVS--VELQRYKIRIGDGP-E--DEFDPLLVKSEASRLMM 263 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~-~~~~~~--~~L~~L~l~~~~~~-~--~~~~~~~~~~~~L~~L~ 263 (620)
.. .....+..+.. .-.++++.+..... +..... ++|+.+++...... . ....+.+...+.++.+.
T Consensus 184 ~~--------~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 184 KG--------GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp CS--------SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred cc--------cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 31 12234444431 11345555553332 222222 67777777543200 0 00011244567778888
Q ss_pred Eecccccccccc--hhHHHH--HhccccceecccccChhhhcccCCcCCCccccceEEeccCCCce-Eeeeccccccccc
Q 007039 264 LKGIKKVSILQE--NDGTKM--LLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL-HIVGSVRRVRCEV 338 (620)
Q Consensus 264 l~~~~~~~~i~~--~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~ 338 (620)
+..+ .+.. ..++.. ..++|++|++.++.....+...+. ....++|+.|.+.+...-. .+++. .......
T Consensus 256 L~~~----~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~~~~~L~~L~~~~~~~~~~~~p~~-~~~~~~~ 329 (562)
T 3a79_B 256 LQHI----ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF-TYSETALKSLMIEHVKNQVFLFSKE-ALYSVFA 329 (562)
T ss_dssp EEEE----EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCC-CCCSCSCCEEEEEEEEECCCSSCHH-HHHHHHH
T ss_pred ecCC----cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhh-hcccccchheehhhcccceeecChh-hhhhhhc
Confidence 7762 2221 111111 124899999987764323322221 0012455555554432111 11100 0000111
Q ss_pred ccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCC
Q 007039 339 FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKP 418 (620)
Q Consensus 339 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 418 (620)
.++|+.|+++++. +..+.. .+.+++|++|++.++. ++...+ ..+.++++|++|+++++. ++.+...
T Consensus 330 ~~~L~~L~l~~n~-~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~----- 395 (562)
T 3a79_B 330 EMNIKMLSISDTP-FIHMVC-----PPSPSSFTFLNFTQNV-FTDSVF-QGCSTLKRLQTLILQRNG-LKNFFKV----- 395 (562)
T ss_dssp TCCCSEEEEESSC-CCCCCC-----CSSCCCCCEEECCSSC-CCTTTT-TTCCSCSSCCEEECCSSC-CCBTTHH-----
T ss_pred cCcceEEEccCCC-cccccC-----ccCCCCceEEECCCCc-cccchh-hhhcccCCCCEEECCCCC-cCCcccc-----
Confidence 2458888888865 222111 2568899999998863 444222 235678999999998853 4432200
Q ss_pred CCCccccccccCCCCccccccCccceEecCCcccccc-ccccCCccccccCCccEEEEecCCCcceecchhhhccc-Ccc
Q 007039 419 PTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKK-LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSL-GQL 496 (620)
Q Consensus 419 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l-~~L 496 (620)
+..+..+++|++|+++++ .+.. ++...+ ..+++|++|++++| .++.. .+..+ ++|
T Consensus 396 --------------~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---~~l~~L~~L~l~~n-~l~~~----~~~~l~~~L 452 (562)
T 3a79_B 396 --------------ALMTKNMSSLETLDVSLN-SLNSHAYDRTC---AWAESILVLNLSSN-MLTGS----VFRCLPPKV 452 (562)
T ss_dssp --------------HHTTTTCTTCCEEECTTS-CCBSCCSSCCC---CCCTTCCEEECCSS-CCCGG----GGSSCCTTC
T ss_pred --------------hhhhcCCCCCCEEECCCC-cCCCccChhhh---cCcccCCEEECCCC-CCCcc----hhhhhcCcC
Confidence 012356789999999988 4544 544433 36789999999996 45433 22334 689
Q ss_pred cEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccc-cccCCCccEEEecc
Q 007039 497 QHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDE-KVRLPSLEVLHISE 575 (620)
Q Consensus 497 ~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~-~~~l~~L~~L~i~~ 575 (620)
+.|+++++ .++.+ +.+... +++|+.|+++++. ++ .+|.. +..+++|+.|++++
T Consensus 453 ~~L~L~~N-~l~~i--p~~~~~------l~~L~~L~L~~N~-l~----------------~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 453 KVLDLHNN-RIMSI--PKDVTH------LQALQELNVASNQ-LK----------------SVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp SEEECCSS-CCCCC--CTTTTS------SCCCSEEECCSSC-CC----------------CCCTTSTTTCTTCCCEECCS
T ss_pred CEEECCCC-cCccc--ChhhcC------CCCCCEEECCCCC-CC----------------CCCHHHHhcCCCCCEEEecC
Confidence 99999987 56654 333333 7889999988762 33 34444 66788999999988
Q ss_pred cc
Q 007039 576 AD 577 (620)
Q Consensus 576 C~ 577 (620)
++
T Consensus 507 N~ 508 (562)
T 3a79_B 507 NP 508 (562)
T ss_dssp CC
T ss_pred CC
Confidence 75
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=236.97 Aligned_cols=343 Identities=18% Similarity=0.229 Sum_probs=253.0
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
.++++++|++.++.. ..+|. +..+++|++|++++|.+..+|. ++++++|++|++++|.+.....++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i--~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HhccccEEecCCCCC--ccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 467899999998877 55665 5789999999999999988887 889999999999999988733389999999999
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+|. +.++++|++|++++|. +..++. +.++++|+.|++.+ ... ....++++++|+.|+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~----------~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVT----------DLKPLANLTTLERLD 183 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCC----------CCGGGTTCTTCCEEE
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-ccc----------CchhhccCCCCCEEE
Confidence 99999888875 8899999999999987 677765 88999999999853 222 223478888899999
Q ss_pred eecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
++++....++. +..+++|+.|++++ +..
T Consensus 184 l~~n~l~~~~~-------------------------l~~l~~L~~L~l~~---------------------------n~l 211 (466)
T 1o6v_A 184 ISSNKVSDISV-------------------------LAKLTNLESLIATN---------------------------NQI 211 (466)
T ss_dssp CCSSCCCCCGG-------------------------GGGCTTCSEEECCS---------------------------SCC
T ss_pred CcCCcCCCChh-------------------------hccCCCCCEEEecC---------------------------Ccc
Confidence 88776543321 23334444444443 221
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEee
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD 376 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 376 (620)
. . ...++.+++|++|+++++. +..+ .....+++|+.|+++++. +..+.. ...+++|++|++.
T Consensus 212 ~-~----~~~~~~l~~L~~L~l~~n~-l~~~------~~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 212 S-D----ITPLGILTNLDELSLNGNQ-LKDI------GTLASLTNLTDLDLANNQ-ISNLAP-----LSGLTKLTELKLG 273 (466)
T ss_dssp C-C----CGGGGGCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC-CCCCGG-----GTTCTTCSEEECC
T ss_pred c-c----cccccccCCCCEEECCCCC-cccc------hhhhcCCCCCEEECCCCc-cccchh-----hhcCCCCCEEECC
Confidence 1 1 1113468899999999985 3322 145678999999999875 333322 4678999999999
Q ss_pred cCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccc
Q 007039 377 SCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKL 456 (620)
Q Consensus 377 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 456 (620)
+| .++..++ +..+++|++|++++|. +..+. ....+++|+.|++++| .+..+
T Consensus 274 ~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-----------------------~~~~l~~L~~L~L~~n-~l~~~ 324 (466)
T 1o6v_A 274 AN-QISNISP---LAGLTALTNLELNENQ-LEDIS-----------------------PISNLKNLTYLTLYFN-NISDI 324 (466)
T ss_dssp SS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCG-----------------------GGGGCTTCSEEECCSS-CCSCC
T ss_pred CC-ccCcccc---ccCCCccCeEEcCCCc-ccCch-----------------------hhcCCCCCCEEECcCC-cCCCc
Confidence 86 5555554 4689999999999864 33332 2467899999999999 55544
Q ss_pred cccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccC
Q 007039 457 WSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWL 536 (620)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 536 (620)
.. +..+++|++|++++| .++.+ ..+..+++|+.|++++|+ +.... + ... +++|+.|++.++
T Consensus 325 ~~-----~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~-~--~~~------l~~L~~L~l~~n 385 (466)
T 1o6v_A 325 SP-----VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLT-P--LAN------LTRITQLGLNDQ 385 (466)
T ss_dssp GG-----GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCG-G--GTT------CTTCCEEECCCE
T ss_pred hh-----hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccc-h--hhc------CCCCCEEeccCC
Confidence 32 347999999999997 77776 457889999999999986 44332 1 333 789999999887
Q ss_pred C
Q 007039 537 P 537 (620)
Q Consensus 537 ~ 537 (620)
+
T Consensus 386 ~ 386 (466)
T 1o6v_A 386 A 386 (466)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=237.24 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=97.1
Q ss_pred EEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-CC-hhhhhcccCCcEEEccCC
Q 007039 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~~~~l~~L~~L~L~~~ 118 (620)
.++..++.+..+|. -.++|++|++++|.+ ..++...+.++++|++|++++|.+. .+ +..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 34455555555555 225666666666665 3333333466666666666666654 33 345666666666666666
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCC-CChh--ccCCCCCCEEeCCCCcccccc-chHHHhCCcCCcEEEcCCCcccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVI-APNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
.+.. |..++++++|++|++++|.++. +|.. +.++++|++|++++|. +..+ |...+.++++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 6654 4566666666666666666653 2333 6666666666666666 3333 33335666666666666665542
Q ss_pred ccccCCCCcchhhhcCC--CCCCEEEeecCCCCCCC
Q 007039 193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEILP 226 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~ 226 (620)
.. ...+.++ .+|+.|+++++....++
T Consensus 169 ~~--------~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 169 IC--------EEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp CC--------TTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred cC--------hhhhhccccccccccccccCcccccc
Confidence 11 1222222 45666666666554443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=234.32 Aligned_cols=163 Identities=21% Similarity=0.316 Sum_probs=104.8
Q ss_pred cchhhhhhccccCCcEEEEccCCCCcCCC-CcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-h
Q 007039 25 ADLEKKMEETIQKDPIAISLPHRDIQELP-ERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-P 101 (620)
Q Consensus 25 ~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p 101 (620)
.+...+|. +++++++|++++|.+..++ ... ++++|++|++++|.. ...++...|.++++|++|++++|.+..+ |
T Consensus 20 ~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 20 RGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp SCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccCh
Confidence 34444443 4567777777777776552 222 677777777777765 3455555556777777777777776654 5
Q ss_pred hhhhcccCCcEEEccCCCCCC--hhh--hcCCCCCCEEecCCCCCCCC-Chh-ccCCCCCCEEeCCCCccccccchHHHh
Q 007039 102 SSLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQL-PVE-IGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~--~~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
..++++++|++|++++|.+.+ +.. ++++++|++|++++|.+..+ |.. ++++++|++|++++|. +..+++..+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 175 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLL 175 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhh
Confidence 667777777777777777665 333 67777777777777777655 433 6677777777777776 4444433355
Q ss_pred CC--cCCcEEEcCCCccc
Q 007039 176 KL--SQLEELYMGNGFSG 191 (620)
Q Consensus 176 ~l--~~L~~L~l~~~~~~ 191 (620)
.+ .+|+.|++.++.+.
T Consensus 176 ~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp GGTTCEEEEEECTTCBCT
T ss_pred ccccccccccccccCccc
Confidence 44 56777777766654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=224.71 Aligned_cols=301 Identities=17% Similarity=0.167 Sum_probs=212.2
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++++|+++++.+..++....+++|++|++++|.. ..++. +..+++|++|++++|.+..++ .+.++++|++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI--TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCcc--ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 677899999999888887766888999999998877 55655 578899999999999888876 4888899999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.+...+..+++|++|++++|.....+..+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 9988887444888899999999988444334458888999999999887 666665 788889999999888765
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~ 274 (620)
.+..+..+++|+.|+++++....++. +.. ++|+.|++..+..... +.+..
T Consensus 191 ------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~---~~~~~------------------- 241 (347)
T 4fmz_A 191 ------DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL---SPLAN------------------- 241 (347)
T ss_dssp ------CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC---GGGTT-------------------
T ss_pred ------ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC---cchhc-------------------
Confidence 22337788888888888887665544 222 5666666544332211 11223
Q ss_pred chhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCch
Q 007039 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE 354 (620)
Q Consensus 275 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 354 (620)
+++|+.|++.++... .+ +.+..+++|++|+++++. +..+ .....+++|+.|+++++. +.
T Consensus 242 --------l~~L~~L~l~~n~l~-~~----~~~~~l~~L~~L~l~~n~-l~~~------~~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 242 --------LSQLTWLEIGTNQIS-DI----NAVKDLTKLKMLNVGSNQ-ISDI------SVLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp --------CTTCCEEECCSSCCC-CC----GGGTTCTTCCEEECCSSC-CCCC------GGGGGCTTCSEEECCSSC-CC
T ss_pred --------CCCCCEEECCCCccC-CC----hhHhcCCCcCEEEccCCc-cCCC------hhhcCCCCCCEEECcCCc-CC
Confidence 345555555544221 11 224477888888888873 3322 145677888888888875 33
Q ss_pred hhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecC
Q 007039 355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (620)
Q Consensus 355 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 405 (620)
...... ...+++|++|++.+|+ ++..++ +..+++|++|++++|+
T Consensus 301 ~~~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 NEDMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CcChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 332221 3568888999998875 566554 4678888888888764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=235.03 Aligned_cols=402 Identities=16% Similarity=0.109 Sum_probs=186.5
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCC-------------CcEEEcCCCCCCCCh
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEG-------------LKVLQFPGIGSSSLP 101 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~-------------Lr~L~l~~~~~~~lp 101 (620)
...+|+++++++.+..+|+.. ++++|++|++++|.+ .+.+|..+ +++++ +++|++++|.+..+|
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~-~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW-ERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHH-HHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcc-cccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 345666666666666666544 666666666666654 33444443 34443 366666666655555
Q ss_pred hhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCC
Q 007039 102 SSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L 180 (620)
.. .++|++|++++|.+.. |. .+.+|++|++++|.++.+|.. .++|++|++++|. +..+|. ++++++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCC
Confidence 42 2456666666665555 32 125566666666655555432 1456666666655 444552 5566666
Q ss_pred cEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCcccccccccc
Q 007039 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASR 260 (620)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 260 (620)
++|++++|.+... + . ...+|++|++++|....++. +..+++|+
T Consensus 156 ~~L~l~~N~l~~l-p--------~---~~~~L~~L~L~~n~l~~l~~-------------------------~~~l~~L~ 198 (454)
T 1jl5_A 156 KIIDVDNNSLKKL-P--------D---LPPSLEFIAAGNNQLEELPE-------------------------LQNLPFLT 198 (454)
T ss_dssp CEEECCSSCCSCC-C--------C---CCTTCCEEECCSSCCSSCCC-------------------------CTTCTTCC
T ss_pred CEEECCCCcCccc-C--------C---CcccccEEECcCCcCCcCcc-------------------------ccCCCCCC
Confidence 6666655554310 0 0 11255555555554433321 22333333
Q ss_pred EEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeeccccccccccc
Q 007039 261 LMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFP 340 (620)
Q Consensus 261 ~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 340 (620)
.|++++ +... . ++ ...++|++|+++++. +..++ ....++
T Consensus 199 ~L~l~~---------------------------N~l~-~----l~--~~~~~L~~L~l~~n~-l~~lp------~~~~l~ 237 (454)
T 1jl5_A 199 AIYADN---------------------------NSLK-K----LP--DLPLSLESIVAGNNI-LEELP------ELQNLP 237 (454)
T ss_dssp EEECCS---------------------------SCCS-S----CC--CCCTTCCEEECCSSC-CSSCC------CCTTCT
T ss_pred EEECCC---------------------------CcCC-c----CC--CCcCcccEEECcCCc-CCccc------ccCCCC
Confidence 333333 2211 1 11 123589999998884 33332 356788
Q ss_pred ccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCC
Q 007039 341 LLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPT 420 (620)
Q Consensus 341 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 420 (620)
+|+.|+++++. ++.++ ..+++|+.|++.+| .++.++. .+++|++|++++|. ++.++
T Consensus 238 ~L~~L~l~~N~-l~~l~-------~~~~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N~-l~~l~--------- 293 (454)
T 1jl5_A 238 FLTTIYADNNL-LKTLP-------DLPPSLEALNVRDN-YLTDLPE-----LPQSLTFLDVSENI-FSGLS--------- 293 (454)
T ss_dssp TCCEEECCSSC-CSSCC-------SCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSEES---------
T ss_pred CCCEEECCCCc-CCccc-------ccccccCEEECCCC-cccccCc-----ccCcCCEEECcCCc-cCccc---------
Confidence 88888888853 44332 23578899999886 4555543 24788888888754 33332
Q ss_pred CccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEE
Q 007039 421 TQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLE 500 (620)
Q Consensus 421 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 500 (620)
...++|+.|+++++ .+..++. ..++|++|+++++ +++.++ . .+++|++|+
T Consensus 294 ----------------~~~~~L~~L~l~~N-~l~~i~~-------~~~~L~~L~Ls~N-~l~~lp--~---~~~~L~~L~ 343 (454)
T 1jl5_A 294 ----------------ELPPNLYYLNASSN-EIRSLCD-------LPPSLEELNVSNN-KLIELP--A---LPPRLERLI 343 (454)
T ss_dssp ----------------CCCTTCCEEECCSS-CCSEECC-------CCTTCCEEECCSS-CCSCCC--C---CCTTCCEEE
T ss_pred ----------------CcCCcCCEEECcCC-cCCcccC-------CcCcCCEEECCCC-cccccc--c---cCCcCCEEE
Confidence 11368999999988 5554321 1258999999984 677662 1 368999999
Q ss_pred EcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcccc---cCCCCccccccccccCCCccEEEecccc
Q 007039 501 IRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVI---HTEMQPQSLFDEKVRLPSLEVLHISEAD 577 (620)
Q Consensus 501 i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~---~~~~~l~~l~~~~~~l~~L~~L~i~~C~ 577 (620)
+++| .++.+. . .+++|+.|++++++ ++.++..+..+ ........+|. .+++|++|+++++
T Consensus 344 L~~N-~l~~lp--~---------~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~---~~~~L~~L~ls~N- 406 (454)
T 1jl5_A 344 ASFN-HLAEVP--E---------LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPE---LPQNLKQLHVETN- 406 (454)
T ss_dssp CCSS-CCSCCC--C---------CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC------------------------
T ss_pred CCCC-cccccc--c---------hhhhccEEECCCCC-CCcCCCChHHHHhhhhccccccccc---ccCcCCEEECCCC-
Confidence 9986 455442 2 25789999998863 44433222111 11112222222 2378899999888
Q ss_pred chhhhccccccCCcccCccEEEeccCcCc
Q 007039 578 KLRKIWHHQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 578 ~L~~l~~~~~~~~~~~sL~~L~i~~C~~l 606 (620)
.++.++. +| ++++.|.+.+|.--
T Consensus 407 ~l~~~~~--iP----~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 407 PLREFPD--IP----ESVEDLRMNSERVV 429 (454)
T ss_dssp -----------------------------
T ss_pred cCCcccc--ch----hhHhheeCcCcccC
Confidence 4665433 33 67888888777533
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=226.06 Aligned_cols=177 Identities=20% Similarity=0.180 Sum_probs=138.0
Q ss_pred cccCCcEEEEccCCCCc-CCCCcC-CCCC-------------ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC
Q 007039 34 TIQKDPIAISLPHRDIQ-ELPERL-QCPN-------------LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS 98 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~-~l~~~~-~~~~-------------Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 98 (620)
.-.++++.|+++++.+. .+|... ++++ ++.|++++|.. ..+|. ..++|++|++++|.+.
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l--~~lp~----~~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL--SSLPE----LPPHLESLVASCNSLT 104 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC--SCCCS----CCTTCSEEECCSSCCS
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc--ccCCC----CcCCCCEEEccCCcCC
Confidence 44778888999988874 566554 5665 49999999987 55665 2579999999999999
Q ss_pred CChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCc
Q 007039 99 SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (620)
Q Consensus 99 ~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~ 178 (620)
.+|.. ..+|++|++++|.+...+.+ .++|++|++++|.++.+| .++++++|++|++++|. +..+|.. ..
T Consensus 105 ~lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~----~~ 173 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL----PP 173 (454)
T ss_dssp SCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCC----CT
T ss_pred ccccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCC----cc
Confidence 99864 37899999999998773222 279999999999999999 69999999999999998 6777753 35
Q ss_pred CCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEE
Q 007039 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
+|++|++++|.+.. +..++++++|+.|++++|....+|... ++|+.|++
T Consensus 174 ~L~~L~L~~n~l~~----------l~~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l 222 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE----------LPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVA 222 (454)
T ss_dssp TCCEEECCSSCCSS----------CCCCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEEC
T ss_pred cccEEECcCCcCCc----------CccccCCCCCCEEECCCCcCCcCCCCc--CcccEEEC
Confidence 99999999998761 235889999999999999877655421 34455544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.7e-24 Score=221.07 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=110.8
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++++|+++++.+..+|....+++|++|++++|.+ ..++ +..+++|++|++++|.+..++ ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 566777777777776666544777777777777766 3343 456777777777777777664 667777777777
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+...+ ++.+++|++|++++|.++.++ ++++++|++|++++|..++.++ +..+++|++|++++|.+..
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence 777766632 667777777777777777664 6677777777777775555553 5667777777777776541
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEI 224 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (620)
+. ++.+++|+.|++++|....
T Consensus 185 -------l~-l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 185 -------LD-VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp -------CC-CTTCTTCCEEECCSSCCSC
T ss_pred -------ec-cccCCCCCEEECcCCcCCe
Confidence 11 5566677777777665543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=219.11 Aligned_cols=181 Identities=21% Similarity=0.172 Sum_probs=150.4
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
++++|++|++++|.+ ..+| . +..+++|++|++++|.+..+| ++.+++|++|++++|.+...+ ++++++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l--~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSI--TDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCC--CCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCc--ccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEE
Confidence 789999999999988 5566 3 589999999999999999987 889999999999999988843 88999999999
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+| ++++++|++|++++|. +..++ ++++++|++|++++|.... .+ .++.+++|+.|+
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~---------~~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKIT---------KL-DVTPQTQLTTLD 176 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCC---------CC-CCTTCTTCCEEE
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCccc---------cc-ccccCCcCCEEE
Confidence 9999999986 8999999999999998 66675 7899999999999985441 11 477889999999
Q ss_pred eecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 217 IEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 217 l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
+++|....++ +.. ++|+.|.+..+..... .+..+++|+.|++++
T Consensus 177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSS 221 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCS
T ss_pred CCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcC
Confidence 9999988876 344 8999999976654332 145556666666665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=221.60 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=58.2
Q ss_pred CCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecC
Q 007039 369 NLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELV 448 (620)
Q Consensus 369 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 448 (620)
+|++|++.+| .++.++. ..+.++++|++|+++++. +..+.. ..+..+++|++|+++
T Consensus 225 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~---------------------~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 225 NLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEG---------------------SMLHELLRLQEIQLV 280 (477)
T ss_dssp CCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECT---------------------TSCTTCTTCCEEECC
T ss_pred cccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccCh---------------------hhccccccCCEEECC
Confidence 5566666554 3444432 234566666666666643 333321 123445667777776
Q ss_pred CccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccc
Q 007039 449 SLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 449 ~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
++ .+..+....+ ..+++|++|+++++ .++.+ +...+..+++|++|++.+++
T Consensus 281 ~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 281 GG-QLAVVEPYAF---RGLNYLRVLNVSGN-QLTTL-EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SS-CCSEECTTTB---TTCTTCCEEECCSS-CCSCC-CGGGBSCGGGCCEEECCSSC
T ss_pred CC-ccceECHHHh---cCcccCCEEECCCC-cCcee-CHhHcCCCcccCEEEccCCC
Confidence 66 4444433222 25667777777774 56665 33455666777777776654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=216.43 Aligned_cols=304 Identities=13% Similarity=0.133 Sum_probs=217.7
Q ss_pred CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCC
Q 007039 56 LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKL 132 (620)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L 132 (620)
..++++++|++.++.. ..+|..++..+++|++|++++|.+..++ ..++++++|++|++++|.+.. +..++++++|
T Consensus 42 ~~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3678999999998887 7788888889999999999999988765 478899999999999999887 4678999999
Q ss_pred CEEecCCCCCCCCChhc-cCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCC
Q 007039 133 EILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE 211 (620)
Q Consensus 133 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 211 (620)
++|++++|.++.+|..+ +++++|++|++++|. +..+++..+.++++|++|++++|.+.. ..++.+++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~l~~ 187 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPS 187 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-----------CCGGGCTT
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-----------cccccccc
Confidence 99999999999988774 889999999999987 667766668899999999999887751 13567788
Q ss_pred CCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceec
Q 007039 212 LTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL 291 (620)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l 291 (620)
|+.|+++++....++. ...|+.|++..+...... ... .++|+.|++
T Consensus 188 L~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~~~----~~~---------------------------~~~L~~L~l 233 (390)
T 3o6n_A 188 LFHANVSYNLLSTLAI---PIAVEELDASHNSINVVR----GPV---------------------------NVELTILKL 233 (390)
T ss_dssp CSEEECCSSCCSEEEC---CSSCSEEECCSSCCCEEE----CCC---------------------------CSSCCEEEC
T ss_pred cceeecccccccccCC---CCcceEEECCCCeeeecc----ccc---------------------------cccccEEEC
Confidence 9999998876543321 145555555333211110 011 245555655
Q ss_pred ccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCc
Q 007039 292 ETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR 371 (620)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 371 (620)
.++.... . +.+..+++|++|+++++. +..+.. .....+++|+.|+++++ .++.++.. ...+++|+
T Consensus 234 ~~n~l~~-~----~~l~~l~~L~~L~Ls~n~-l~~~~~----~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~ 298 (390)
T 3o6n_A 234 QHNNLTD-T----AWLLNYPGLVEVDLSYNE-LEKIMY----HPFVKMQRLERLYISNN-RLVALNLY----GQPIPTLK 298 (390)
T ss_dssp CSSCCCC-C----GGGGGCTTCSEEECCSSC-CCEEES----GGGTTCSSCCEEECCSS-CCCEEECS----SSCCTTCC
T ss_pred CCCCCcc-c----HHHcCCCCccEEECCCCc-CCCcCh----hHccccccCCEEECCCC-cCcccCcc----cCCCCCCC
Confidence 5543221 1 124577888999988884 332211 14566788888888885 35555433 45689999
Q ss_pred EEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCc
Q 007039 372 IINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSL 450 (620)
Q Consensus 372 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 450 (620)
+|++.+| .++.++. .+..+++|++|+++++. +..+. ...+++|+.|+++++
T Consensus 299 ~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~------------------------~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 299 VLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK------------------------LSTHHTLKNLTLSHN 349 (390)
T ss_dssp EEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC------------------------CCTTCCCSEEECCSS
T ss_pred EEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC------------------------chhhccCCEEEcCCC
Confidence 9999987 5666654 36789999999999865 33222 244677778887776
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=212.21 Aligned_cols=282 Identities=15% Similarity=0.152 Sum_probs=213.4
Q ss_pred hhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 31 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
+.....+++++|++++|.+..++...++++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 33455889999999999999888866999999999999987 55653 6899999999999999999987 8899999
Q ss_pred cEEEccCCCC-CChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc
Q 007039 111 QTLCLDWCEL-ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (620)
Q Consensus 111 ~~L~L~~~~~-~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 189 (620)
++|++++|.. ..+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|++.++.
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCC
Confidence 9999999974 447779999999999999999998875 8999999999999998 777776 8999999999999988
Q ss_pred cccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccc
Q 007039 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK 268 (620)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 268 (620)
+. ....++.+++|++|++++|....++. +.. ++|+.|++..+..... +.+..+++|+.|+++++
T Consensus 211 l~----------~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n- 275 (347)
T 4fmz_A 211 IT----------DITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSN- 275 (347)
T ss_dssp CC----------CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSS-
T ss_pred CC----------CCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCC-
Confidence 76 12337889999999999999887776 344 8999999976543332 23455556666666552
Q ss_pred ccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccc
Q 007039 269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM 348 (620)
Q Consensus 269 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 348 (620)
.+. .+ +.+..+++|++|++++|.-.. . .......+++|+.|+++
T Consensus 276 ---~l~------------------------~~----~~~~~l~~L~~L~L~~n~l~~-~----~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 276 ---QIS------------------------DI----SVLNNLSQLNSLFLNNNQLGN-E----DMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp ---CCC------------------------CC----GGGGGCTTCSEEECCSSCCCG-G----GHHHHHTCTTCSEEECC
T ss_pred ---ccC------------------------CC----hhhcCCCCCCEEECcCCcCCC-c----ChhHhhccccCCEEEcc
Confidence 111 11 113356677777777764211 1 11133456777777777
Q ss_pred cccCchhhhccCCCCCCcCCCCcEEEeecC
Q 007039 349 FLTNLETICYSQLREDQSFSNLRIINVDSC 378 (620)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 378 (620)
+++ +..++. ...+++|++|++.+|
T Consensus 320 ~n~-l~~~~~-----~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 320 QNH-ITDIRP-----LASLSKMDSADFANQ 343 (347)
T ss_dssp SSS-CCCCGG-----GGGCTTCSEESSSCC
T ss_pred CCc-cccccC-----hhhhhccceeehhhh
Confidence 765 333322 345777888877775
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=243.31 Aligned_cols=384 Identities=15% Similarity=0.049 Sum_probs=188.4
Q ss_pred CCCCccEEEcccCCCCC--ccc-----------chHHHhcCCCCcEEEcCCCCCCC-Chhhhhc-cc-CCcEEEccCCC-
Q 007039 57 QCPNLQLFLLYTEGNGP--MQV-----------SDHFFEGMEGLKVLQFPGIGSSS-LPSSLGR-LI-NLQTLCLDWCE- 119 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~--~~~-----------~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~-l~-~L~~L~L~~~~- 119 (620)
.+++|++|++.++.... ..+ ...+...+++|++|+++++.+.. .+..+.. ++ +|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 67778888887653200 001 12233467788888888776643 2344444 33 38888887776
Q ss_pred CCC--h-hhhcCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCcccc-----ccchHHHhCCcCCcEEEcC
Q 007039 120 LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLE-----VIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 120 ~~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~-----~~p~~~l~~l~~L~~L~l~ 186 (620)
+.. . ..+.++++|++|++++|.+.. ++.....+++|++|+++++. +. .++. .+.++++|++|++.
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~-~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLET-IARNCRSLVSVKVG 228 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHH-HHHHCTTCCEEECS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHH-HHhhCCCCcEEecc
Confidence 332 2 334467788888888876542 33344567778888887766 33 2222 25567778888877
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
++.+. .....++++++|++|+++.+....... .....+..+++|+.+.+..
T Consensus 229 ~~~~~---------~l~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 229 DFEIL---------ELVGFFKAAANLEEFCGGSLNEDIGMP--------------------EKYMNLVFPRKLCRLGLSY 279 (592)
T ss_dssp SCBGG---------GGHHHHHHCTTCCEEEECBCCCCTTCT--------------------TSSSCCCCCTTCCEEEETT
T ss_pred CccHH---------HHHHHHhhhhHHHhhcccccccccchH--------------------HHHHHhhccccccccCccc
Confidence 76554 233556677777777776532210000 0011144556777777765
Q ss_pred ccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhc
Q 007039 267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS 346 (620)
Q Consensus 267 ~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 346 (620)
. ...........+++|++|++.++......... .+..+++|++|++.++-. +.........+++|++|+
T Consensus 280 ~----~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~--~~~~~~~L~~L~L~~~~~-----~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 280 M----GPNEMPILFPFAAQIRKLDLLYALLETEDHCT--LIQKCPNLEVLETRNVIG-----DRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp C----CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH--HHTTCTTCCEEEEEGGGH-----HHHHHHHHHHCTTCCEEE
T ss_pred c----chhHHHHHHhhcCCCcEEecCCCcCCHHHHHH--HHHhCcCCCEEeccCccC-----HHHHHHHHHhCCCCCEEE
Confidence 2 11111122223556677776665511111100 023566677766663310 111111223455666666
Q ss_pred ccc----------ccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEe---cCCccccccc
Q 007039 347 LMF----------LTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED---CDDLKMIIGP 413 (620)
Q Consensus 347 l~~----------~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~---c~~l~~~~~~ 413 (620)
+.+ |..+.......+ ...+++|++|.+ +|..++.........++++|++|++.+ |+.++..+.+
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l--~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIAL--AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHH--HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred eecCccccccccccCccCHHHHHHH--HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 663 444443221111 123566666666 444554432222223356666666653 2333322100
Q ss_pred CCCCCCCCccccccccCCCCccccccCccceEecCCccc-cccccccCCcc-ccccCCccEEEEecCCCcceecchhhhc
Q 007039 414 DMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTN-IKKLWSDQFQG-IYCCQNLTKVTVWSCHRLKYLFSYSMVN 491 (620)
Q Consensus 414 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~-~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 491 (620)
. + .......+++|+.|++++|.+ +.. ..... ...+++|++|++++| .+++......+.
T Consensus 426 ~--------~--------~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~ 485 (592)
T 3ogk_B 426 N--------G--------VRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR 485 (592)
T ss_dssp H--------H--------HHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT
T ss_pred H--------H--------HHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHHhCccceEeeccCC-CCCHHHHHHHHh
Confidence 0 0 000123355666666655443 111 00000 013555666666654 344332233445
Q ss_pred ccCcccEEEEcccc
Q 007039 492 SLGQLQHLEIRNCR 505 (620)
Q Consensus 492 ~l~~L~~L~i~~C~ 505 (620)
.+++|++|+|++|+
T Consensus 486 ~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 486 GCPNLQKLEMRGCC 499 (592)
T ss_dssp CCTTCCEEEEESCC
T ss_pred cCcccCeeeccCCC
Confidence 55666666666665
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-23 Score=222.10 Aligned_cols=304 Identities=14% Similarity=0.154 Sum_probs=216.5
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
.+++++.+++.++.. ..+|..++..+++|++|++++|.+..++ ..|+.+++|++|++++|.+.. +..|+++++|+
T Consensus 49 ~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 678999999999887 7888888899999999999999998765 489999999999999999887 46789999999
Q ss_pred EEecCCCCCCCCChhc-cCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCC
Q 007039 134 ILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (620)
Q Consensus 134 ~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (620)
+|++++|.+..+|..+ +++++|++|++++|. +..+++..++++++|++|++++|.+.. ..++.+++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~l~~L 194 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPSL 194 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-----------CCGGGCTTC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-----------cChhhhhhh
Confidence 9999999999998774 899999999999998 667776668899999999999987761 135567778
Q ss_pred CEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecc
Q 007039 213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE 292 (620)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~ 292 (620)
+.|++++|....++ ..++++.|++++
T Consensus 195 ~~L~l~~n~l~~l~----------------------------~~~~L~~L~ls~-------------------------- 220 (597)
T 3oja_B 195 FHANVSYNLLSTLA----------------------------IPIAVEELDASH-------------------------- 220 (597)
T ss_dssp SEEECCSSCCSEEE----------------------------CCTTCSEEECCS--------------------------
T ss_pred hhhhcccCcccccc----------------------------CCchhheeeccC--------------------------
Confidence 88888766433211 111223333322
Q ss_pred cccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcE
Q 007039 293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI 372 (620)
Q Consensus 293 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 372 (620)
+.. ..+. ....++|+.|+++++. +...+ ....+++|+.
T Consensus 221 -n~l-~~~~-----~~~~~~L~~L~L~~n~------------------------------l~~~~-----~l~~l~~L~~ 258 (597)
T 3oja_B 221 -NSI-NVVR-----GPVNVELTILKLQHNN------------------------------LTDTA-----WLLNYPGLVE 258 (597)
T ss_dssp -SCC-CEEE-----CSCCSCCCEEECCSSC------------------------------CCCCG-----GGGGCTTCSE
T ss_pred -Ccc-cccc-----cccCCCCCEEECCCCC------------------------------CCCCh-----hhccCCCCCE
Confidence 111 0000 1122456666666553 11110 1456788889
Q ss_pred EEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccc
Q 007039 373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTN 452 (620)
Q Consensus 373 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 452 (620)
|++.++ .++..++ ..+.++++|++|+++++ .+..++ .....+|+|+.|++++| .
T Consensus 259 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~----------------------~~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 259 VDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RLVALN----------------------LYGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp EECCSS-CCCEEES-GGGTTCSSCCEEECTTS-CCCEEE----------------------CSSSCCTTCCEEECCSS-C
T ss_pred EECCCC-ccCCCCH-HHhcCccCCCEEECCCC-CCCCCC----------------------cccccCCCCcEEECCCC-C
Confidence 998886 4555533 24577889999999885 344443 12245788999999888 5
Q ss_pred cccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccc
Q 007039 453 IKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 453 l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
+..++.. +..+++|++|++++| .++.++ +..+++|+.|++++++
T Consensus 313 l~~i~~~----~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 313 LLHVERN----QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCGGG----HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CCccCcc----cccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 5555433 346888999999885 566652 5567888889888876
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=213.28 Aligned_cols=304 Identities=15% Similarity=0.113 Sum_probs=200.4
Q ss_pred cCCCCcEEEcCCCCCCCChhh-hhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEE
Q 007039 83 GMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLL 158 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 158 (620)
.+.++++|+++++.+..+|.. +.++++|++|++++|.+.+ +..++.+++|++|++++|.+..+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999999865 6899999999999999987 4689999999999999999998754 58999999999
Q ss_pred eCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEE
Q 007039 159 DLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYK 238 (620)
Q Consensus 159 ~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 238 (620)
++++|. +..+|..++.++++|++|++++|.+.. .....++++++|++|++++|....++.
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~----------- 182 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER--------IEDDTFQATTSLQNLQLSSNRLTHVDL----------- 182 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB--------CCTTTTSSCTTCCEEECCSSCCSBCCG-----------
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc--------cChhhccCCCCCCEEECCCCcCCcccc-----------
Confidence 999998 789998867999999999999998762 223457889999999999887654431
Q ss_pred EEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEe
Q 007039 239 IRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLV 318 (620)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l 318 (620)
...++++.+++++ ... .. +...++|++|++
T Consensus 183 ---------------~~l~~L~~L~l~~---------------------------n~l-----~~---~~~~~~L~~L~l 212 (390)
T 3o6n_A 183 ---------------SLIPSLFHANVSY---------------------------NLL-----ST---LAIPIAVEELDA 212 (390)
T ss_dssp ---------------GGCTTCSEEECCS---------------------------SCC-----SE---EECCSSCSEEEC
T ss_pred ---------------ccccccceeeccc---------------------------ccc-----cc---cCCCCcceEEEC
Confidence 2223333333333 100 00 112345666666
Q ss_pred ccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccce
Q 007039 319 TDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK 398 (620)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 398 (620)
+++. +..+ ....+++|+.|++.++. +...+ ....+++|++|++.++ .++..++ ..+.++++|++
T Consensus 213 ~~n~-l~~~-------~~~~~~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~ 276 (390)
T 3o6n_A 213 SHNS-INVV-------RGPVNVELTILKLQHNN-LTDTA-----WLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLER 276 (390)
T ss_dssp CSSC-CCEE-------ECCCCSSCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCE
T ss_pred CCCe-eeec-------cccccccccEEECCCCC-CcccH-----HHcCCCCccEEECCCC-cCCCcCh-hHccccccCCE
Confidence 6653 2222 12234555555555543 22221 1445677777777765 3444432 23456677777
Q ss_pred EEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecC
Q 007039 399 VKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSC 478 (620)
Q Consensus 399 L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C 478 (620)
|+++++. +..++. ....+++|++|++++| .+..++.. +..+++|++|+++++
T Consensus 277 L~L~~n~-l~~~~~----------------------~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 277 LYISNNR-LVALNL----------------------YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLENLYLDHN 328 (390)
T ss_dssp EECCSSC-CCEEEC----------------------SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSEEECCSS
T ss_pred EECCCCc-CcccCc----------------------ccCCCCCCCEEECCCC-cceecCcc----ccccCcCCEEECCCC
Confidence 7776643 333331 1234667777777776 45444322 234667777777774
Q ss_pred CCcceecchhhhcccCcccEEEEcccc
Q 007039 479 HRLKYLFSYSMVNSLGQLQHLEIRNCR 505 (620)
Q Consensus 479 ~~L~~l~~~~~~~~l~~L~~L~i~~C~ 505 (620)
.++.++ +..+++|+.|++++++
T Consensus 329 -~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 -SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCCC----CCTTCCCSEEECCSSC
T ss_pred -ccceeC----chhhccCCEEEcCCCC
Confidence 455551 4456677777777654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=215.67 Aligned_cols=177 Identities=20% Similarity=0.183 Sum_probs=96.0
Q ss_pred cccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L 110 (620)
.++.++++|++++|.+..++. ..++++|++|++++|.+ ..++...|.++++|++|++++|.+..+|. .+.++++|
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 345556666666666655432 12556666666666555 33333334556666666666666655553 34556666
Q ss_pred cEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
++|++++|.+.. +..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+.++++|+.|++.+
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEES
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCC
Confidence 666666666554 34555666666666666655543 3345556666666666655 4555555455666666666655
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
+.+... ....+.++++|+.|+++++.
T Consensus 186 n~i~~~--------~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 186 LNINAI--------RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CCCCEE--------CTTCSCSCTTCCEEEEECCT
T ss_pred CcCcEe--------ChhhcccCcccceeeCCCCc
Confidence 554311 11334555556666665543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=217.37 Aligned_cols=301 Identities=16% Similarity=0.149 Sum_probs=221.5
Q ss_pred cCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcE
Q 007039 36 QKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQT 112 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~ 112 (620)
..+++.+++.++.+..+|... ++++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 578899999999999888754 799999999999998 56665557899999999999999988764 6799999999
Q ss_pred EEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc
Q 007039 113 LCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (620)
Q Consensus 113 L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 189 (620)
|++++|.+.. | ..|+++++|++|++++|.+..++. .++++++|++|++++|. +..++ ++.+++|+.|++++|.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCc
Confidence 9999999988 5 446999999999999999987754 69999999999999998 67665 5778999999999887
Q ss_pred cccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccc
Q 007039 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
+. .+....+|+.|++++|....++... .++|+.|++++
T Consensus 204 l~-------------~l~~~~~L~~L~ls~n~l~~~~~~~--------------------------~~~L~~L~L~~--- 241 (597)
T 3oja_B 204 LS-------------TLAIPIAVEELDASHNSINVVRGPV--------------------------NVELTILKLQH--- 241 (597)
T ss_dssp CS-------------EEECCTTCSEEECCSSCCCEEECSC--------------------------CSCCCEEECCS---
T ss_pred cc-------------cccCCchhheeeccCCccccccccc--------------------------CCCCCEEECCC---
Confidence 65 3455678999999988765444321 12344444443
Q ss_pred cccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcccc
Q 007039 270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMF 349 (620)
Q Consensus 270 ~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (620)
..+.. . ..+..+++|++|+++++.- ..++. .....+++|+.|++++
T Consensus 242 -n~l~~------------------------~----~~l~~l~~L~~L~Ls~N~l-~~~~~----~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 242 -NNLTD------------------------T----AWLLNYPGLVEVDLSYNEL-EKIMY----HPFVKMQRLERLYISN 287 (597)
T ss_dssp -SCCCC------------------------C----GGGGGCTTCSEEECCSSCC-CEEES----GGGTTCSSCCEEECTT
T ss_pred -CCCCC------------------------C----hhhccCCCCCEEECCCCcc-CCCCH----HHhcCccCCCEEECCC
Confidence 11110 0 1133566677777766642 22211 1345566777777766
Q ss_pred ccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcccccccc
Q 007039 350 LTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINA 429 (620)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~ 429 (620)
+ .+..++.. ...+++|+.|++.+| .++.+|. .+..+++|++|++++|.- ..+.
T Consensus 288 N-~l~~l~~~----~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~l-~~~~------------------ 340 (597)
T 3oja_B 288 N-RLVALNLY----GQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNSI-VTLK------------------ 340 (597)
T ss_dssp S-CCCEEECS----SSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSCC-CCCC------------------
T ss_pred C-CCCCCCcc----cccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCCC-CCcC------------------
Confidence 4 34444332 456889999999886 4556654 357899999999998753 3222
Q ss_pred CCCCccccccCccceEecCCcc
Q 007039 430 EDDPVHQVTFPRLEELELVSLT 451 (620)
Q Consensus 430 ~~~~~~~~~l~~L~~L~l~~~~ 451 (620)
...+++|+.|++++++
T Consensus 341 ------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 ------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ------CCTTCCCSEEECCSSC
T ss_pred ------hhhcCCCCEEEeeCCC
Confidence 3557899999998874
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-24 Score=232.27 Aligned_cols=442 Identities=12% Similarity=0.033 Sum_probs=232.8
Q ss_pred ccchHHHhcCCCCcEEEcCCCCC----CCC------------hhhhhcccCCcEEEccCCCCCC--hhhhcCC--CCCCE
Q 007039 75 QVSDHFFEGMEGLKVLQFPGIGS----SSL------------PSSLGRLINLQTLCLDWCELAD--IAAIGQL--KKLEI 134 (620)
Q Consensus 75 ~~~~~~~~~l~~Lr~L~l~~~~~----~~l------------p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L--~~L~~ 134 (620)
..+..++..+++|++|+++++.. ..+ +....++++|++|++++|.+.+ +..+..+ .+|++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 34666778899999999987542 111 2222378889999999888775 4556553 45999
Q ss_pred EecCCCC-CC--CCChhccCCCCCCEEeCCCCccccccc----hHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhc
Q 007039 135 LSLAYSN-IN--QLPVEIGQLTRLQLLDLSNCWWLEVIA----PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE 207 (620)
Q Consensus 135 L~l~~~~-l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 207 (620)
|++++|. +. .++..+.++++|++|++++|. +.... ......+++|++|+++++.+... ........+.
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~~~~ 217 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI----SPKDLETIAR 217 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSC----CHHHHHHHHH
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCcc----CHHHHHHHHh
Confidence 9998884 33 344445578889999998886 33322 12256788889998887766411 0112334456
Q ss_pred CCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhcccc
Q 007039 208 RLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287 (620)
Q Consensus 208 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~ 287 (620)
++++|++|+++++....++.. +...++|+++.+..................+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGF------------------------FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHH------------------------HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred hCCCCcEEeccCccHHHHHHH------------------------HhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 778888888887655444432 22334444444433110000000000001234566
Q ss_pred ceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcC
Q 007039 288 DLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSF 367 (620)
Q Consensus 288 ~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 367 (620)
.|.+.+... ..+... +..+++|++|++++|. +. +.........+++|+.|++.++ +.+.....+ ...+
T Consensus 274 ~L~l~~~~~-~~l~~~---~~~~~~L~~L~Ls~~~-l~---~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~--~~~~ 341 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPIL---FPFAAQIRKLDLLYAL-LE---TEDHCTLIQKCPNLEVLETRNV--IGDRGLEVL--AQYC 341 (592)
T ss_dssp EEEETTCCT-TTGGGG---GGGGGGCCEEEETTCC-CC---HHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH--HHHC
T ss_pred ccCccccch-hHHHHH---HhhcCCCcEEecCCCc-CC---HHHHHHHHHhCcCCCEEeccCc--cCHHHHHHH--HHhC
Confidence 665554321 111111 2356677777777765 21 1111112356677777777632 222111110 2346
Q ss_pred CCCcEEEeec----------CCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCcccc
Q 007039 368 SNLRIINVDS----------CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQV 437 (620)
Q Consensus 368 ~~L~~L~l~~----------c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 437 (620)
++|++|++.+ |..++.........++++|++|.+ +|..+...... ....
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~--------------------~l~~ 400 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLE--------------------SIGT 400 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH--------------------HHHH
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH--------------------HHHh
Confidence 6777777774 666655433334456777777777 44555433210 0012
Q ss_pred ccCccceEecCC---cccccccccc--CCccccccCCccEEEEecCCC-cceecchhhhcccCcccEEEEcccccccccc
Q 007039 438 TFPRLEELELVS---LTNIKKLWSD--QFQGIYCCQNLTKVTVWSCHR-LKYLFSYSMVNSLGQLQHLEIRNCRSIEGVV 511 (620)
Q Consensus 438 ~l~~L~~L~l~~---~~~l~~l~~~--~~~~~~~l~~L~~L~i~~C~~-L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~ 511 (620)
.+++|++|++.+ |..++..+.. .......+++|++|+++.|.+ +++.........+++|++|++++|. +....
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~ 479 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG 479 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH
Confidence 366777777763 3344432110 000123467777777776653 3433333334456777777777665 32211
Q ss_pred cccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCc
Q 007039 512 NTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKS 591 (620)
Q Consensus 512 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~ 591 (620)
.+.... .+++|++|+|++|+ ++.. .++.....+++|++|++++|. ++......+ ..+
T Consensus 480 ~~~~~~------~~~~L~~L~l~~n~-l~~~--------------~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l-~~~ 536 (592)
T 3ogk_B 480 LMEFSR------GCPNLQKLEMRGCC-FSER--------------AIAAAVTKLPSLRYLWVQGYR-ASMTGQDLM-QMA 536 (592)
T ss_dssp HHHHHT------CCTTCCEEEEESCC-CBHH--------------HHHHHHHHCSSCCEEEEESCB-CCTTCTTGG-GGC
T ss_pred HHHHHh------cCcccCeeeccCCC-CcHH--------------HHHHHHHhcCccCeeECcCCc-CCHHHHHHH-HHh
Confidence 111112 25677777777776 4321 122334456777777777775 554322222 124
Q ss_pred ccCccEEEecc
Q 007039 592 FSKLKKLKISG 602 (620)
Q Consensus 592 ~~sL~~L~i~~ 602 (620)
+|.++...|..
T Consensus 537 ~p~l~~~~~~~ 547 (592)
T 3ogk_B 537 RPYWNIELIPS 547 (592)
T ss_dssp CTTEEEEEECC
T ss_pred CCCcEEEEecC
Confidence 45555555543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-23 Score=227.54 Aligned_cols=410 Identities=17% Similarity=0.132 Sum_probs=211.8
Q ss_pred CCCCccEEEcccCCCCCccc--------------chHHHhcCCCCcEEEcCCCCCCC-Chhhhh-cccCCcEEEccCCC-
Q 007039 57 QCPNLQLFLLYTEGNGPMQV--------------SDHFFEGMEGLKVLQFPGIGSSS-LPSSLG-RLINLQTLCLDWCE- 119 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~--------------~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~-~l~~L~~L~L~~~~- 119 (620)
.+++|++|++.++.. ..++ ...+...+++|++|+++++.+.. .+..+. .+++|++|++++|.
T Consensus 64 ~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPH-FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCc-hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 567777777777643 1111 12234567788888888777653 233443 57788888888774
Q ss_pred CCC--h-hhhcCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCccccccch----HHHhCCcCCcEEEcCC
Q 007039 120 LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLEVIAP----NVISKLSQLEELYMGN 187 (620)
Q Consensus 120 ~~~--~-~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~----~~l~~l~~L~~L~l~~ 187 (620)
+.+ + ..+.++++|++|++++|.++. ++.....+++|++|++++|. ..+.. ..+.++++|++|++.+
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 544 3 334467888888888776543 23333466788888887765 12221 1234567888888877
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEE-Eec
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMM-LKG 266 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~ 266 (620)
|... ......+.++++|++|++..+...-....+ ..+. +.+..+++|+.+. +..
T Consensus 221 ~~~~--------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~l~---------------~~l~~~~~L~~Ls~~~~ 275 (594)
T 2p1m_B 221 AVPL--------EKLATLLQRAPQLEELGTGGYTAEVRPDVY--SGLS---------------VALSGCKELRCLSGFWD 275 (594)
T ss_dssp TSCH--------HHHHHHHHHCTTCSEEECSBCCCCCCHHHH--HHHH---------------HHHHTCTTCCEEECCBT
T ss_pred CCcH--------HHHHHHHhcCCcceEcccccccCccchhhH--HHHH---------------HHHhcCCCcccccCCcc
Confidence 6322 113345566777787776544321000000 0000 0012222233221 111
Q ss_pred ccccccccchhHHHHHhccccceecccccChhhh-cccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 267 ~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
... .....+...+++|++|++.++. +... ... ....+++|++|++.+|. . +.........+++|++|
T Consensus 276 ---~~~-~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~--~~~~~~~L~~L~l~~~~--~---~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 276 ---AVP-AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVK--LLCQCPKLQRLWVLDYI--E---DAGLEVLASTCKDLREL 343 (594)
T ss_dssp ---CCG-GGGGGGHHHHTTCCEEECTTCC-CCHHHHHH--HHTTCTTCCEEEEEGGG--H---HHHHHHHHHHCTTCCEE
T ss_pred ---cch-hhHHHHHHhhCCCCEEEccCCC-CCHHHHHH--HHhcCCCcCEEeCcCcc--C---HHHHHHHHHhCCCCCEE
Confidence 000 0111112234566666665554 2111 000 02356677777777661 1 11111122346667777
Q ss_pred cccc--------ccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEE-----ecCCcccccc
Q 007039 346 SLMF--------LTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE-----DCDDLKMIIG 412 (620)
Q Consensus 346 ~l~~--------~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~~~~ 412 (620)
++.+ +..+.+.....+ ...+++|++|. .+|..++.........++++|++|++. +|..++..+.
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l--~~~~~~L~~L~-~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESVL-YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHH--HHHCTTCCEEE-EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred EEecCcccccccCCCCCHHHHHHH--HHhchhHHHHH-HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 6633 333333221111 12377888884 456666654443344567888888888 5666653321
Q ss_pred cCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCcccc-ccCCccEEEEecCCCcceecchhhhc
Q 007039 413 PDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIY-CCQNLTKVTVWSCHRLKYLFSYSMVN 491 (620)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-~l~~L~~L~i~~C~~L~~l~~~~~~~ 491 (620)
.. + .......+++|++|++.+ ++... ....+. .+++|++|++++|. +++......+.
T Consensus 421 ~~--------~--------~~~l~~~~~~L~~L~L~~--~l~~~---~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~ 478 (594)
T 2p1m_B 421 DI--------G--------FGAIVEHCKDLRRLSLSG--LLTDK---VFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLS 478 (594)
T ss_dssp HH--------H--------HHHHHHHCTTCCEEECCS--SCCHH---HHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHH
T ss_pred hh--------H--------HHHHHhhCCCccEEeecC--cccHH---HHHHHHHhchhccEeeccCCC-CcHHHHHHHHh
Confidence 00 0 001134567888888865 33221 111111 37788888888874 55543334346
Q ss_pred ccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCC
Q 007039 492 SLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK 538 (620)
Q Consensus 492 ~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 538 (620)
.+++|++|+|++|+. .......... .+++|+.|++++|+.
T Consensus 479 ~~~~L~~L~L~~n~~-~~~~~~~~~~------~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF-GDKALLANAS------KLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSC-CHHHHHHTGG------GGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCC-cHHHHHHHHH------hCCCCCEEeeeCCCC
Confidence 678888888888874 3221111112 367888888888864
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-23 Score=225.44 Aligned_cols=403 Identities=15% Similarity=0.105 Sum_probs=247.0
Q ss_pred cCCcEEEEccCCCC-cCCC---------------CcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCC-CC
Q 007039 36 QKDPIAISLPHRDI-QELP---------------ERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GS 97 (620)
Q Consensus 36 ~~~lr~L~l~~~~~-~~l~---------------~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~ 97 (620)
.++++++.+.++.. ..+. ... .+++|++|+++++.. ....+..+...+++|++|++++| .+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 57799999998752 2111 111 688999999999987 44445555447999999999999 45
Q ss_pred CC--ChhhhhcccCCcEEEccCCCCCC--hhhh----cCCCCCCEEecCCCC--CC--CCChhccCCCCCCEEeCCCCcc
Q 007039 98 SS--LPSSLGRLINLQTLCLDWCELAD--IAAI----GQLKKLEILSLAYSN--IN--QLPVEIGQLTRLQLLDLSNCWW 165 (620)
Q Consensus 98 ~~--lp~~~~~l~~L~~L~L~~~~~~~--~~~i----~~L~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~ 165 (620)
.. ++..+.++++|++|++++|.+.+ +..+ ..+++|++|++++|. +. .++..+.++++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 66666789999999999998664 3333 367799999999986 22 2333345689999999999966
Q ss_pred ccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE-eecCCCCCCCCcccccCceEEEEEeCCC
Q 007039 166 LEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE-IEVPDAEILPPDFVSVELQRYKIRIGDG 244 (620)
Q Consensus 166 ~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 244 (620)
...++.. +.++++|++|++..+...... .........++++++|+.+. +.......++..
T Consensus 224 ~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~---------------- 284 (594)
T 2p1m_B 224 LEKLATL-LQRAPQLEELGTGGYTAEVRP--DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV---------------- 284 (594)
T ss_dssp HHHHHHH-HHHCTTCSEEECSBCCCCCCH--HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG----------------
T ss_pred HHHHHHH-HhcCCcceEcccccccCccch--hhHHHHHHHHhcCCCcccccCCcccchhhHHHH----------------
Confidence 7776654 889999999998765321000 00112345678889999883 332222222221
Q ss_pred CCCCCCccccccccccEEEEecccccccccc--hhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccC-
Q 007039 245 PEDEFDPLLVKSEASRLMMLKGIKKVSILQE--NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC- 321 (620)
Q Consensus 245 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~- 321 (620)
...+++|++|+++++. +.. ...+...+++|+.|++.++.....+.. + ...+++|++|++.+|
T Consensus 285 --------~~~~~~L~~L~L~~~~----l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~-l--~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 285 --------YSVCSRLTTLNLSYAT----VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV-L--ASTCKDLRELRVFPSE 349 (594)
T ss_dssp --------HHHHTTCCEEECTTCC----CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-H--HHHCTTCCEEEEECSC
T ss_pred --------HHhhCCCCEEEccCCC----CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH-H--HHhCCCCCEEEEecCc
Confidence 1234445555555422 221 111122346666666665521111111 0 123677888877443
Q ss_pred -------CCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEee-----cCCCceeecch--
Q 007039 322 -------SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD-----SCRKLKYLFSF-- 387 (620)
Q Consensus 322 -------~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~-- 387 (620)
..+. +.........+++|+.|. .+|.++.......+ ...+++|+.|++. +|..++..+..
T Consensus 350 ~~g~~~~~~l~---~~~l~~l~~~~~~L~~L~-~~~~~l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 350 PFVMEPNVALT---EQGLVSVSMGCPKLESVL-YFCRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp TTCSSCSSCCC---HHHHHHHHHHCTTCCEEE-EEESCCCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred ccccccCCCCC---HHHHHHHHHhchhHHHHH-HhcCCcCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 2221 111111223467888884 34555554332221 1347899999998 67788754322
Q ss_pred --hHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccc-
Q 007039 388 --SMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGI- 464 (620)
Q Consensus 388 --~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~- 464 (620)
..+.++++|++|++.+ .+...... .....+++|+.|++++|. +... ....+
T Consensus 424 ~~~l~~~~~~L~~L~L~~--~l~~~~~~--------------------~l~~~~~~L~~L~L~~~~-i~~~---~~~~l~ 477 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG--LLTDKVFE--------------------YIGTYAKKMEMLSVAFAG-DSDL---GMHHVL 477 (594)
T ss_dssp HHHHHHHCTTCCEEECCS--SCCHHHHH--------------------HHHHHCTTCCEEEEESCC-SSHH---HHHHHH
T ss_pred HHHHHhhCCCccEEeecC--cccHHHHH--------------------HHHHhchhccEeeccCCC-CcHH---HHHHHH
Confidence 2356788999999955 44433211 001237889999999884 3221 11111
Q ss_pred cccCCccEEEEecCCCcceecchhhhcccCcccEEEEccccc
Q 007039 465 YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRS 506 (620)
Q Consensus 465 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 506 (620)
..+++|++|++++|+. ++......+..+++|+.|++++|+.
T Consensus 478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3589999999999865 5543444566789999999999975
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=194.59 Aligned_cols=292 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
++++++++++.. ..+|..+ .++|++|++++|.+..++ ..+.++++|++|++++|.+.. +..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGL--KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCC--SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCc--cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 577788877776 5666543 467888888888877663 467788888888888888776 56778888888888
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+... ......++.+ +|+.|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS------GFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG------GSCTTSSCSC-CCSCCB
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC------CCCcccccCC-ccCEEE
Confidence 88888888877665 788888888877 6677766677888888888887766411 1123445555 788888
Q ss_pred eecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
++++....+|..+. ++|+.|++..+...... ...+..+ ++|+.|++.++.-
T Consensus 179 l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~-~~~l~~l---------------------------~~L~~L~L~~N~l 229 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP-ETLNELHLDHNKIQAIE-LEDLLRY---------------------------SKLYRLGLGHNQI 229 (332)
T ss_dssp CCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCC-TTSSTTC---------------------------TTCSCCBCCSSCC
T ss_pred CcCCCCCccCcccc-CCCCEEECCCCcCCccC-HHHhcCC---------------------------CCCCEEECCCCcC
Confidence 88877776665432 45555555433221110 0012223 4455555544332
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCC---CCcCCCCcEE
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII 373 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~~L~~L 373 (620)
....... +..+++|++|+++++. +..++. ....+++|+.|+++++ .++.++...+.. ...++.|+.|
T Consensus 230 ~~~~~~~---~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 230 RMIENGS---LSFLPTLRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp CCCCTTG---GGGCTTCCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred CcCChhH---hhCCCCCCEEECCCCc-CeecCh-----hhhcCccCCEEECCCC-CCCccChhHccccccccccccccce
Confidence 2111111 3367778888887773 333321 3456777888888774 355554433221 1125778888
Q ss_pred EeecCCCceeecchhHHHHhcccceEEEEecC
Q 007039 374 NVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405 (620)
Q Consensus 374 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 405 (620)
++.+++..........+..+++|+.++++++.
T Consensus 300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EeecCcccccccCcccccccchhhhhhccccc
Confidence 88887643111122345678888888887764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-21 Score=190.45 Aligned_cols=292 Identities=14% Similarity=0.110 Sum_probs=171.2
Q ss_pred CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
++++++++++.. ..+|..+ .+.+++|++++|.+..++. .++++++|++|++++|.+.. |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l--~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCc--cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 577777777766 5566543 3677888888888777654 67788888888888888776 56778888888888
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+... ......++++++|++|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG------GBCTTGGGGCTTCCEEE
T ss_pred CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc------CcChhhccCCCCcCEEE
Confidence 88888888777655 688888888877 6677766678888888888887766411 12335677788888888
Q ss_pred eecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
++++....++..+. ++|+.|++..+..... ....+..+++|+.|++++ +.-
T Consensus 178 l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~---------------------------n~l 228 (330)
T 1xku_A 178 IADTNITTIPQGLP-PSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSF---------------------------NSI 228 (330)
T ss_dssp CCSSCCCSCCSSCC-TTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCS---------------------------SCC
T ss_pred CCCCccccCCcccc-ccCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCC---------------------------CcC
Confidence 88887776665432 4555555533221110 001123333444444443 321
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCC---CCcCCCCcEE
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII 373 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~~L~~L 373 (620)
....... +..+++|++|+++++. +..++. ....+++|++|+++++. ++.++...+.. ....+.|+.|
T Consensus 229 ~~~~~~~---~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 229 SAVDNGS---LANTPHLRELHLNNNK-LVKVPG-----GLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp CEECTTT---GGGSTTCCEEECCSSC-CSSCCT-----TTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred ceeChhh---ccCCCCCCEEECCCCc-CccCCh-----hhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccce
Confidence 1111111 2355666666666663 222211 33455666666666543 44443322210 1124667777
Q ss_pred EeecCCCceeecchhHHHHhcccceEEEEec
Q 007039 374 NVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC 404 (620)
Q Consensus 374 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 404 (620)
++.+.+--........+..+++++.++++++
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCccccccccceeEEEeccc
Confidence 7776543211111234456677777777653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=193.08 Aligned_cols=130 Identities=24% Similarity=0.317 Sum_probs=92.2
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 161 (620)
...++++|+++++.+..+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578888888888888888888888888888888888777 777888888888888888888888888888888888888
Q ss_pred CCccccccchHHHhC---------CcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 162 NCWWLEVIAPNVISK---------LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 162 ~~~~~~~~p~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
+|...+.+|.. +.. +++|++|++++|.+. ..+..++++++|++|++++|..
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCC
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCC
Confidence 87767777764 332 455555555544433 1223344445555555554443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=188.93 Aligned_cols=174 Identities=15% Similarity=0.207 Sum_probs=115.2
Q ss_pred CCcEEEEccCCCCc---CCCCcC-CCCCccEEEccc-CCCCCcccchHHHhcCCCCcEEEcCCCCCC-CChhhhhcccCC
Q 007039 37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINL 110 (620)
Q Consensus 37 ~~lr~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L 110 (620)
.++++|+++++.+. .++... ++++|++|++++ |.. ...+|.. +.++++|++|++++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46777777777775 355444 677777777774 554 3455555 367777777777777775 567777777777
Q ss_pred cEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCC-CCCEEeCCCCccccccchHHHhCCcCCcEEEcC
Q 007039 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLT-RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 111 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 186 (620)
++|++++|.+.. |..++.+++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. +..+. |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence 777777777663 566777777777777777776 6777777776 7777777777633345544 66665 7777777
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
+|.+.. .....++++++|+.|++++|..
T Consensus 206 ~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 206 RNMLEG--------DASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp SSEEEE--------CCGGGCCTTSCCSEEECCSSEE
T ss_pred CCcccC--------cCCHHHhcCCCCCEEECCCCce
Confidence 776542 2334566677777777766654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=188.21 Aligned_cols=264 Identities=16% Similarity=0.125 Sum_probs=172.1
Q ss_pred EEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCC
Q 007039 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCE 119 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 119 (620)
..+.+++.+..+|... .++|++|++++|.+ ..++...+.++++|++|++++|.+..+ |..++++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3677777777777643 25788888888877 556665567888888888888888765 4568888888888888888
Q ss_pred CCC-h-hhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 120 LAD-I-AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 120 ~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
+.. + ..++++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 188 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--- 188 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence 777 4 447888888888888888888876 577888888888888755677766557888888888888877652
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCC--CCCccccccccccEEEEecccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPED--EFDPLLVKSEASRLMMLKGIKKVS 271 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 271 (620)
.....++++++|++|++++|....++..... ++|+.|++..+..... ...+.......++.+.++. .
T Consensus 189 -----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~----~ 259 (353)
T 2z80_A 189 -----YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN----V 259 (353)
T ss_dssp -----ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES----C
T ss_pred -----cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc----c
Confidence 2235677788888888888877666655443 7788888866543322 1111123345566666666 2
Q ss_pred cccch-----hHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCC
Q 007039 272 ILQEN-----DGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS 322 (620)
Q Consensus 272 ~i~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 322 (620)
.+... ......+++|+.|++.++.-. .+.... ++.+++|++|++++++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~--~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI--FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT--TTTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH--HhcCCCCCEEEeeCCC
Confidence 22211 011122345566666554322 111110 2355666666666554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=181.70 Aligned_cols=191 Identities=23% Similarity=0.297 Sum_probs=132.1
Q ss_pred chhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCC-CCCC-h
Q 007039 26 DLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSL-P 101 (620)
Q Consensus 26 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p 101 (620)
+...+|. .+++++++|+++++.+..++.. .++++|++|++++|.+ ..++...+..+++|++|++++|. +..+ |
T Consensus 22 ~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 22 GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 3444443 4567778888888777666542 2777888888877766 44433445777788888888776 6666 5
Q ss_pred hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCc
Q 007039 102 SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~ 178 (620)
..+..+++|++|++++|.+.. +..+.++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+.+++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCcc
Confidence 667777788888888877766 45677778888888888777776654 6777788888887776 6666665577777
Q ss_pred CCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
+|++|++++|.+.. .....++++++|+.|++++|....++..
T Consensus 178 ~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 178 SLDRLLLHQNRVAH--------VHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred ccCEEECCCCcccc--------cCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 88888887776652 2235566777777777777776655543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=187.87 Aligned_cols=193 Identities=24% Similarity=0.357 Sum_probs=162.7
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
..+++.|+++++.+..+|... ++++|++|++++|.+ ..+|..+ ..+++|++|++++|.+..+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l--~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL--MELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC--CCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc--cchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 578999999999999888766 899999999999998 4788764 889999999999999999999999999999999
Q ss_pred ccCCCCC-C-hhhhc---------CCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEE
Q 007039 115 LDWCELA-D-IAAIG---------QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183 (620)
Q Consensus 115 L~~~~~~-~-~~~i~---------~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L 183 (620)
+++|.+. . |..++ ++++|++|++++|.++.+|..++++++|++|++++|. +..+|.. +.++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence 9998744 4 55554 4999999999999999999999999999999999998 6788876 8999999999
Q ss_pred EcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC-CCCCCCcccc-cCceEEEEEe
Q 007039 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPPDFVS-VELQRYKIRI 241 (620)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-~~L~~L~l~~ 241 (620)
++++|.+... .+..++++++|+.|++++|. ...+|..+.. ++|+.|++..
T Consensus 235 ~Ls~n~~~~~--------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 235 DLRGCTALRN--------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp ECTTCTTCCB--------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred ECcCCcchhh--------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 9999887632 34568889999999999876 4455555444 5666666543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=179.12 Aligned_cols=287 Identities=13% Similarity=0.122 Sum_probs=140.0
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEcc
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~ 116 (620)
+++.++++++.+..+|... .+++++|++++|.+ ..++...+.++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3555555555555554432 24555666666555 344443345566666666666655554 4555566666666666
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCcccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
+|.+.+ |..+. ++|++|++++|.+..++. .+.++++|++|++++|. +.. +....+.++++|++|+++++.+..
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCcccc
Confidence 665554 33332 456666666665555443 25556666666665554 221 222225555666666665555431
Q ss_pred ccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCccc-c-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccc
Q 007039 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFV-S-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (620)
. ...+ .++|++|++++|....++...+ . ++|+.|++..+..... ....+..+++|+.|+++++.-
T Consensus 186 l---------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l- 252 (330)
T 1xku_A 186 I---------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKL- 252 (330)
T ss_dssp C---------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCC-
T ss_pred C---------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcC-
Confidence 1 0111 1455555555555444433222 2 5555555543332111 001144556666666666321
Q ss_pred ccccchhHHHHHhccccceecccccChhhhcccCCc---CCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 271 SILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD---GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 271 ~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
..+ +.++ ..+++|++|++.++.-.......+.. ....+.|+.|++.+++.....+ .......++.++.+++
T Consensus 253 ~~l--p~~l-~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i---~~~~f~~~~~l~~l~L 326 (330)
T 1xku_A 253 VKV--PGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI---QPSTFRCVYVRAAVQL 326 (330)
T ss_dssp SSC--CTTT-TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS---CGGGGTTCCCGGGEEC
T ss_pred ccC--Chhh-ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccccc---CccccccccceeEEEe
Confidence 111 1121 23466777777655433222222221 1235788999999886321000 0013445667777777
Q ss_pred cc
Q 007039 348 MF 349 (620)
Q Consensus 348 ~~ 349 (620)
++
T Consensus 327 ~~ 328 (330)
T 1xku_A 327 GN 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-21 Score=202.30 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=103.3
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-----CChhhhhcccCCcEEEccCCCCCC--hhhh-cCCC
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-----SLPSSLGRLINLQTLCLDWCELAD--IAAI-GQLK 130 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~--~~~i-~~L~ 130 (620)
++|++|+++++.. .......++..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l-~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCC-CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhccc-CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4577777877766 22223444577888888888888876 356777778888888888887765 3333 3455
Q ss_pred ----CCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCccccccchHHHh-----CCcCCcEEEcCCCcccccccc
Q 007039 131 ----KLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-----KLSQLEELYMGNGFSGWEKVE 196 (620)
Q Consensus 131 ----~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~-----~l~~L~~L~l~~~~~~~~~~~ 196 (620)
+|++|++++|.+. .+|..+.++++|++|++++|. +.......+. ..++|++|++++|.+....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-- 158 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-- 158 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG--
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH--
Confidence 6888888888777 456777888888888888877 4432221122 2457888888887665211
Q ss_pred CCCCcchhhhcCCCCCCEEEeecCC
Q 007039 197 GGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
.......++++++|++|++++|.
T Consensus 159 --~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 159 --CEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSB
T ss_pred --HHHHHHHHhhCCCCCEEECcCCC
Confidence 01223455667778888877664
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=180.76 Aligned_cols=288 Identities=15% Similarity=0.126 Sum_probs=182.4
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEcc
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD 116 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~ 116 (620)
+++.++++++.+..+|... .+++++|++++|.+ ..++...+.++++|++|++++|.+..+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777888888877777544 36788888888876 555554467888888888888887765 6678888888888888
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCcccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
+|.+.. |..+. ++|++|++++|.+..+|.. +.++++|++|++++|. ++. +....+..+ +|++|++++|.+..
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 888777 54444 7888888888888877654 7778888888888876 332 333335666 78888888777652
Q ss_pred ccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCccc-c-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccc
Q 007039 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFV-S-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 270 (620)
. ...+ .++|++|++++|....++...+ . ++|+.|++..+..... ....+..+++|+.|+++++.-
T Consensus 187 l---------~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l- 253 (332)
T 2ft3_A 187 I---------PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNNKL- 253 (332)
T ss_dssp C---------CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEECCSSCC-
T ss_pred c---------Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEECCCCcC-
Confidence 1 1111 1567777787777766664333 3 7777777765543222 111256677888888887422
Q ss_pred ccccchhHHHHHhccccceecccccChhhhcccCCc---CCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 271 SILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD---GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 271 ~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
..+ +.+ ...+++|+.|++.+..-.......+.. ...++.|+.|++.+++....-. .......+++|+.+++
T Consensus 254 ~~l--p~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~---~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 254 SRV--PAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV---QPATFRCVTDRLAIQF 327 (332)
T ss_dssp CBC--CTT-GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS---CGGGGTTBCCSTTEEC
T ss_pred eec--Chh-hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc---Ccccccccchhhhhhc
Confidence 122 222 234678888888876533222222221 1236789999999987321000 0113456777888887
Q ss_pred cccc
Q 007039 348 MFLT 351 (620)
Q Consensus 348 ~~~~ 351 (620)
+++.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 7653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=183.55 Aligned_cols=225 Identities=20% Similarity=0.203 Sum_probs=154.0
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
.|+...+.+++++.. ..+|..+ .++|++|++++|.+..+|. .+.++++|++|++++|.+.. +..++++++|+
T Consensus 29 ~C~~~~~c~~~~~~l--~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSL--NSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTC--SSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCc--ccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 566667788888877 7788754 4689999999999988765 78899999999999999887 46789999999
Q ss_pred EEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCC
Q 007039 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE 211 (620)
Q Consensus 134 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 211 (620)
+|++++|.++.+|.. ++++++|++|++++|. +..+|. ..+.++++|++|++++|.... ......++++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------~~~~~~~~~l~~ 175 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-------KIQRKDFAGLTF 175 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-------EECTTTTTTCCE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-------ccCHHHccCCCC
Confidence 999999999988876 8889999999999987 677776 457889999999998874221 122356778889
Q ss_pred CCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccc-hhHHHHHhcccccee
Q 007039 212 LTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE-NDGTKMLLQRTEDLW 290 (620)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~-~~~~~~~l~~L~~L~ 290 (620)
|++|++++|....+.... +..+++|++|+++++ .+.. +......+++|+.|+
T Consensus 176 L~~L~l~~n~l~~~~~~~-----------------------l~~l~~L~~L~l~~n----~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKS-----------------------LKSIQNVSHLILHMK----QHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp EEEEEEEETTCCEECTTT-----------------------TTTCSEEEEEEEECS----CSTTHHHHHHHHTTTEEEEE
T ss_pred CCEEECCCCCcCccCHHH-----------------------HhccccCCeecCCCC----ccccchhhhhhhcccccEEE
Confidence 999999988766543221 233444555555542 1211 222233456677777
Q ss_pred cccccChhhhcccCCcCCCccccceEEeccC
Q 007039 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDC 321 (620)
Q Consensus 291 l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 321 (620)
+.++.........+......+.++.++++++
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred CCCCccccccccccccccccchhhccccccc
Confidence 6655432222122221223455666666554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=179.72 Aligned_cols=171 Identities=22% Similarity=0.187 Sum_probs=78.4
Q ss_pred EEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC---hhhhhcccCCcEEEccCC
Q 007039 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 42 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~L~~~ 118 (620)
++..++.+..+|... .+++++|++++|.. ..+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 444444444444322 13455555555544 344444444555555555555554432 334444555555555555
Q ss_pred CCCC-hhhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD-IAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. +..+..+++|++|++++|.+..++. .+..+++|++|++++|. +...+...+.++++|++|++++|.+..
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 164 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE--- 164 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG---
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc---
Confidence 5444 3444455555555555554444432 34455555555555544 333333234455555555555544431
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
......++++++|++|++++|...
T Consensus 165 ----~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 165 ----NFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp ----GEECSCCTTCTTCCEEECTTSCCC
T ss_pred ----ccchhHHhhCcCCCEEECCCCCcC
Confidence 011233444455555555554443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-20 Score=181.15 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=129.7
Q ss_pred CCccEEEcccCCCCCc--ccchHHHhcCCCCcEEEcCC-CCCC-CChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCC
Q 007039 59 PNLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKL 132 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L 132 (620)
.+++.|+++++.. .. .+|.. +..+++|++|++++ |.+. .+|..++++++|++|++++|.+.. |..+.++++|
T Consensus 50 ~~l~~L~L~~~~l-~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNL-PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCC-SSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCc-cCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 5899999999988 44 67766 48899999999995 7765 689999999999999999999874 7889999999
Q ss_pred CEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCc-CCcEEEcCCCccccccccCCCCcchhhhcCCC
Q 007039 133 EILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSGWEKVEGGSNASLVELERLT 210 (620)
Q Consensus 133 ~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 210 (620)
++|++++|.+. .+|..++.+++|++|++++|.....+|.. +.++. +|++|++++|.+... .+..+++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~--------~~~~~~~l~ 198 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK--------IPPTFANLN 198 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE--------CCGGGGGCC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc--------CChHHhCCc
Confidence 99999999888 78999999999999999999854477776 88887 999999999987632 335666776
Q ss_pred CCCEEEeecCCCCC
Q 007039 211 ELTTLEIEVPDAEI 224 (620)
Q Consensus 211 ~L~~L~l~~~~~~~ 224 (620)
|+.|++++|....
T Consensus 199 -L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 199 -LAFVDLSRNMLEG 211 (313)
T ss_dssp -CSEEECCSSEEEE
T ss_pred -ccEEECcCCcccC
Confidence 9999998876543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=185.10 Aligned_cols=188 Identities=22% Similarity=0.262 Sum_probs=136.7
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~ 117 (620)
.+.++..+..+..+|.... ++++.|++++|.+ ..++...|.++++|++|++++|.+..++ ..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4567777777777776442 6788888888877 5555555678888888888888887654 5778888888888888
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
|.+.. + ..|..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 88777 3 467888888888888888887765 57788888888888877677777766788888888888888765
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKI 239 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l 239 (620)
.+..+.++++|++|++++|....++...+. ++|+.|.+
T Consensus 199 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 199 -------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp -------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 223467778888888888876655433222 44444444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=174.13 Aligned_cols=231 Identities=17% Similarity=0.143 Sum_probs=183.6
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCccc---chHHHhcCCCCcEEEcCCCCCC
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQV---SDHFFEGMEGLKVLQFPGIGSS 98 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~~ 98 (620)
+.+...+|. .+++++++|+++++.+..++... ++++|++|++++|.. ..+ +.. +..+++|++|++++|.+.
T Consensus 16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~-~~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL--SFKGCCSQS-DFGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CEEEEEEHH-HHSCSCCCEEECCSCSEE
T ss_pred CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc--CcccCcccc-cccccccCEEECCCCccc
Confidence 344445454 55789999999999999888743 899999999999987 322 444 467999999999999999
Q ss_pred CChhhhhcccCCcEEEccCCCCCC-h--hhhcCCCCCCEEecCCCCCCC-CChhccCCCCCCEEeCCCCcccc-ccchHH
Q 007039 99 SLPSSLGRLINLQTLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLE-VIAPNV 173 (620)
Q Consensus 99 ~lp~~~~~l~~L~~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~-~~p~~~ 173 (620)
.+|..+..+++|++|++++|.+.. + ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.... .+|..
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 170 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 170 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-
Confidence 999889999999999999999876 3 579999999999999998884 45668899999999999998433 24554
Q ss_pred HhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCc
Q 007039 174 ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDP 251 (620)
Q Consensus 174 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~ 251 (620)
+..+++|++|++++|.+.. .....++++++|++|++++|....++...+. ++|+.|++..+...... ..
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~ 241 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQ 241 (306)
T ss_dssp CTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SS
T ss_pred HhhCcCCCEEECCCCCcCC--------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HH
Confidence 8999999999999998762 2245678899999999999998887765444 89999999765533221 11
Q ss_pred ccccc-ccccEEEEeccc
Q 007039 252 LLVKS-EASRLMMLKGIK 268 (620)
Q Consensus 252 ~~~~~-~~L~~L~l~~~~ 268 (620)
.+... ++|+.|++++++
T Consensus 242 ~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCCCTTCCEEECTTCC
T ss_pred HHHhhhccCCEEEccCCC
Confidence 24444 488999998844
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-19 Score=185.04 Aligned_cols=177 Identities=23% Similarity=0.235 Sum_probs=131.5
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~ 117 (620)
.+.++..+..+..+|... .+++++|++++|.+ ..++...|.++++|++|++++|.+..++ ..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456677777777776543 25788888888877 5555455678888888888888887654 6778888888888888
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
|.+.. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 88776 3 557788888888888888887765 57788888888888877677787766788888888888888765
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
.+..+..+++|++|++++|....++..
T Consensus 210 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 210 -------DMPNLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp -------SCCCCTTCTTCCEEECTTSCCSEECGG
T ss_pred -------ccccccccccccEEECcCCcCcccCcc
Confidence 123467778888888888776655443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=180.86 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=188.0
Q ss_pred CccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC
Q 007039 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (620)
Q Consensus 23 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 100 (620)
.+.+...+|. +++.+++.|++++|.+..++.. .++++|++|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus 51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCee
Confidence 3444555554 5678999999999999877643 3899999999999998 667766689999999999999999998
Q ss_pred hh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCC-CCCCCCh-hccCCCCCCEEeCCCCccccccchHHHh
Q 007039 101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 101 p~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
|. .+..+++|++|++++|.+.. + ..|.++++|++|+++++ .+..++. .+.++++|++|++++|. +..+|. +.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~ 204 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LT 204 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cC
Confidence 75 68999999999999999987 4 68999999999999996 7777765 58899999999999998 788886 89
Q ss_pred CCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccc
Q 007039 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL 253 (620)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~ 253 (620)
.+++|++|++++|.+.. .....+.++++|+.|++++|....++...+. ++|+.|++..+...... ...+
T Consensus 205 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~ 275 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSA--------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLF 275 (440)
T ss_dssp TCSSCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTT
T ss_pred CCcccCEEECCCCccCc--------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHh
Confidence 99999999999998762 2346788999999999999998877766544 88888888665433221 1124
Q ss_pred cccccccEEEEecccc
Q 007039 254 VKSEASRLMMLKGIKK 269 (620)
Q Consensus 254 ~~~~~L~~L~l~~~~~ 269 (620)
..+++|+.|++.+++-
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 5667778888777543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=180.44 Aligned_cols=230 Identities=17% Similarity=0.165 Sum_probs=186.7
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 101 (620)
+.+...+|. +++++++.|++++|.+..++.. .++++|++|++++|.+ ..++...|.++++|++|++++|.+..+|
T Consensus 63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccC
Confidence 344555553 5678999999999999877443 3899999999999988 6666666789999999999999999887
Q ss_pred h-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCC-CCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhC
Q 007039 102 S-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (620)
Q Consensus 102 ~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~ 176 (620)
. .++++++|++|++++|.+.. + ..+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~ 216 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTP 216 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTT
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccc
Confidence 5 58899999999999999987 4 68999999999999996 7777776 48899999999999998 788876 899
Q ss_pred CcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCcccc
Q 007039 177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLV 254 (620)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~ 254 (620)
+++|++|++++|.+.. .....+.++++|+.|++++|....++...+. ++|+.|++..+..... ....+.
T Consensus 217 l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~ 287 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPE--------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFT 287 (452)
T ss_dssp CTTCCEEECTTSCCSE--------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTSST
T ss_pred cccccEEECcCCcCcc--------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-ChHHhc
Confidence 9999999999998862 2346788999999999999998777665444 8899998876653322 111245
Q ss_pred ccccccEEEEeccc
Q 007039 255 KSEASRLMMLKGIK 268 (620)
Q Consensus 255 ~~~~L~~L~l~~~~ 268 (620)
.+++|+.|++.+++
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 67788888888754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=168.38 Aligned_cols=192 Identities=19% Similarity=0.215 Sum_probs=157.3
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 117 (620)
.+.++..++.+..+|... .++|++|++++|.+ ..++...+..+++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 377888888888887643 57999999999998 667766678999999999999999876 77899999999999999
Q ss_pred CC-CCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 118 CE-LAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 118 ~~-~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
|. +.. +..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..++...+.++++|++|++++|.+...
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc
Confidence 97 776 57899999999999999999877 5668999999999999998 7788877689999999999999987621
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc-ccc-cCceEEEEEeC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPD-FVS-VELQRYKIRIG 242 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~~L~~L~l~~~ 242 (620)
....+.++++|+.|++++|....+... +.. ++|+.|++..+
T Consensus 169 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 169 --------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 223578899999999999987665333 222 55666655443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-18 Score=165.04 Aligned_cols=191 Identities=21% Similarity=0.219 Sum_probs=158.5
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.++++.+++.++.+..+|.... +++++|++++|.+ ..++...+..+++|++|++++|.+..++.. +.+++|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 5678999999999988886543 7899999999988 566655678999999999999999888764 78899999999
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
++|.+.. |..+..+++|++|++++|.++.+| ..+.++++|++|++++|+ +..+|...+..+++|+.|++++|.+...
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence 9999888 778889999999999999999887 458899999999999988 7888887788999999999999987621
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEE
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKI 239 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 239 (620)
....+.++++|+.|++++|....+|..+.. ..|+.+.+
T Consensus 164 --------~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 164 --------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred --------CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 123467889999999999998888877544 55555554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=177.54 Aligned_cols=169 Identities=20% Similarity=0.154 Sum_probs=136.4
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+++.|+++++.+..+|.... ++|++|++++|.+ ..+|. .+++|++|++++|.+..+|. .+++|++|++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 4568999999999998887554 8999999999987 56775 57999999999999999987 6789999999
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
++|.+.. +. .+.+|++|++++|.++.+|.. +++|++|++++|. +..+|. .+.+|+.|++.+|.+..
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~-- 175 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS-- 175 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC--
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC--
Confidence 9999888 44 678999999999999999874 4899999999997 677765 35789999999988761
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
+. ..+++|+.|++++|....++... ++|+.|.+
T Consensus 176 --------l~--~~~~~L~~L~Ls~N~l~~l~~~~--~~L~~L~L 208 (622)
T 3g06_A 176 --------LP--MLPSGLQELSVSDNQLASLPTLP--SELYKLWA 208 (622)
T ss_dssp --------CC--CCCTTCCEEECCSSCCSCCCCCC--TTCCEEEC
T ss_pred --------Cc--ccCCCCcEEECCCCCCCCCCCcc--chhhEEEC
Confidence 11 45688999999988877665421 44555544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=164.85 Aligned_cols=187 Identities=17% Similarity=0.257 Sum_probs=155.6
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++++|++.++.+..++....+++|++|++++|.+ ..++. +..+++|++|++++|.+..++ .+.++++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 678999999999998888766899999999999987 56665 688999999999999998887 5889999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.....+..+++|++|++++|.+..++. ++.+++|++|++++|. +..++. +.++++|++|++++|.+.
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC----
Confidence 99998885558999999999999999998875 8899999999999987 777776 889999999999998876
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG 242 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 242 (620)
.+..+.++++|++|++++|....++. +.. ++|+.|++..+
T Consensus 187 ------~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 ------DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp ------CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE
T ss_pred ------cChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC
Confidence 22337888999999999988776663 233 66666666443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=161.61 Aligned_cols=191 Identities=21% Similarity=0.310 Sum_probs=150.6
Q ss_pred CCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhh-hhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L 115 (620)
...+.++++++.+..+|.... +++++|++++|.+ ..++...+..+++|++|++++|.+..+|.. +.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 456789999998888876443 6799999999987 566665578899999999999999888754 578999999999
Q ss_pred cCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccc
Q 007039 116 DWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW 192 (620)
Q Consensus 116 ~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~ 192 (620)
++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE
Confidence 9999887 4 5678899999999999988877654 6889999999999987 778887768889999999999887762
Q ss_pred ccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEE
Q 007039 193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKI 239 (620)
Q Consensus 193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l 239 (620)
. ....+.++++|++|++++|....++...+. ++|+.+.+
T Consensus 172 ~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 172 V--------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp C--------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred e--------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 1 224577888999999998887777665322 44444444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=161.80 Aligned_cols=187 Identities=24% Similarity=0.323 Sum_probs=159.9
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 101 (620)
..+...+|. .++.++++|+++++.+..++. ..++++|++|++++|.+ ..++..+|..+++|++|++++|.+..+|
T Consensus 25 ~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 25 SKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp TSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 344444443 457889999999999988875 33899999999999988 6788887889999999999999999887
Q ss_pred h-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCC
Q 007039 102 S-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (620)
Q Consensus 102 ~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l 177 (620)
. .+.++++|++|++++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+.++
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 180 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence 4 57899999999999999887 46789999999999999999998876 7899999999999998 788887778999
Q ss_pred cCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 178 SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
++|++|++++|.+... ....+..+++|+.|++++|..
T Consensus 181 ~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCe
Confidence 9999999999987621 224577889999999998864
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-20 Score=193.21 Aligned_cols=351 Identities=18% Similarity=0.107 Sum_probs=174.7
Q ss_pred CCcEEEEccCCCCcCCC--C-cCCCCCccEEEcccCCCCCc----ccchHHHhcCCCCcEEEcCCCCCCCC-h-hhhhcc
Q 007039 37 KDPIAISLPHRDIQELP--E-RLQCPNLQLFLLYTEGNGPM----QVSDHFFEGMEGLKVLQFPGIGSSSL-P-SSLGRL 107 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~--~-~~~~~~Lr~L~l~~~~~~~~----~~~~~~~~~l~~Lr~L~l~~~~~~~l-p-~~~~~l 107 (620)
+++++|+++++.+...+ . ...+++|++|++++|.. .. .++. .+..+++|++|++++|.+... + .....+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 34556666655553221 1 11455666666666554 11 1222 234556666666666655431 1 112223
Q ss_pred c----CCcEEEccCCCCCC------hhhhcCCCCCCEEecCCCCCCCC-Ch----h-ccCCCCCCEEeCCCCccccccc-
Q 007039 108 I----NLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNINQL-PV----E-IGQLTRLQLLDLSNCWWLEVIA- 170 (620)
Q Consensus 108 ~----~L~~L~L~~~~~~~------~~~i~~L~~L~~L~l~~~~l~~l-p~----~-i~~l~~L~~L~l~~~~~~~~~p- 170 (620)
. +|++|++++|.+.+ +..+.++++|++|++++|.+... +. . ....++|++|++++|. +....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 3 46666666666542 34555666666666666655421 11 1 1123456666666654 33211
Q ss_pred ---hHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhc-----CCCCCCEEEeecCCCCCC-----CCcccc-cCceE
Q 007039 171 ---PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-----RLTELTTLEIEVPDAEIL-----PPDFVS-VELQR 236 (620)
Q Consensus 171 ---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~-~~L~~ 236 (620)
...+..+++|++|++++|.+.. ..+..+. ..++|++|++++|..... +..+.. ++|++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~--------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINE--------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHH--------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHhhCCCCCEEECcCCCcch--------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 1124455666666666555431 1111111 244566666665554432 222222 55666
Q ss_pred EEEEeCCCCCCCC----CccccccccccEEEEecccccccccch-----hHHHHHhccccceecccccChhhhcccCCc-
Q 007039 237 YKIRIGDGPEDEF----DPLLVKSEASRLMMLKGIKKVSILQEN-----DGTKMLLQRTEDLWLETLEGVQSVVHELDD- 306 (620)
Q Consensus 237 L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~i~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~- 306 (620)
|++..+....... .......++|+.|+++++ .+... ......+++|++|++.++.-.......+..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n----~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC----GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS----CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC----CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 6554332111000 000113567888888873 33321 112233678999998876532221111110
Q ss_pred -CCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCC--CCcCCCCcEEEeecCCCcee
Q 007039 307 -GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKY 383 (620)
Q Consensus 307 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~ 383 (620)
....++|++|++++|. +..............+++|++|+++++ .+.+.....+.. ....++|++|++.+| .++.
T Consensus 308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~ 384 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSD 384 (461)
T ss_dssp HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCCh
Confidence 1234699999999986 221100001113345689999999987 455533221110 112679999999998 4553
Q ss_pred e---cchhHHHHhcccceEEEEecC
Q 007039 384 L---FSFSMAKNLLRLQKVKVEDCD 405 (620)
Q Consensus 384 ~---~~~~~~~~l~~L~~L~l~~c~ 405 (620)
. .....+..+++|++|++++|+
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred hhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 112346779999999999975
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=164.98 Aligned_cols=184 Identities=23% Similarity=0.256 Sum_probs=121.5
Q ss_pred cccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L 110 (620)
.++.++++|+++++.+..++. ..++++|++|++++|.. ..++...+..+++|++|++++|.+..++ ..+.++++|
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 345667777777777766654 22677777777777766 4555544577777777777777776654 567777777
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCC--CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCc----E
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE----E 182 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~----~ 182 (620)
++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+.+|+ .
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhcccccee
Confidence 777777777666 3 357777777777777777764 56777777777777777776 5555544455555555 6
Q ss_pred EEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcc
Q 007039 183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF 229 (620)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 229 (620)
|++++|.+... ........+|+.|++++|....++...
T Consensus 182 L~ls~n~l~~~---------~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 182 LDLSLNPMNFI---------QPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp EECCSSCCCEE---------CTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred eecCCCccccc---------CccccCCCcccEEECCCCceeecCHhH
Confidence 77777665521 112222336777777777766665543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-19 Score=177.02 Aligned_cols=246 Identities=13% Similarity=-0.006 Sum_probs=131.9
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
.+++|++|++++|.+ ..++...+..+++|++|++++|.+...++ ++.+++|++|++++|.+... ...++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred cCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEE
Confidence 345666666666665 44444445666666666666666655443 56666666666666665441 1225666666
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhh-cCCCCCCEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTL 215 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L 215 (620)
+++|.+..++.. .+++|++|++++|. +..++...+..+++|++|++++|.+... .+..+ ..+++|++|
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcc--------cHHHHhhccCcCCEE
Confidence 666666655432 35566666666665 4455443356666666666666655411 11222 345666666
Q ss_pred EeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceeccccc
Q 007039 216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (620)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~ 295 (620)
++++|....++.....++|+.|+++.+... .+. .. ...+++|+.|++.++.
T Consensus 175 ~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~--------------------------~l~--~~-~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--------------------------FMG--PE-FQSAAGVTWISLRNNK 225 (317)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCC--------------------------EEC--GG-GGGGTTCSEEECTTSC
T ss_pred ECCCCcCcccccccccccCCEEECCCCcCC--------------------------cch--hh-hcccCcccEEECcCCc
Confidence 666665544432211133333333222111 110 11 1124556666665543
Q ss_pred ChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhh
Q 007039 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETI 356 (620)
Q Consensus 296 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 356 (620)
-. .+... +..+++|+.|++++++-.. +........+++|+.+++.++..++..
T Consensus 226 l~-~l~~~---~~~l~~L~~L~l~~N~~~~----~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 226 LV-LIEKA---LRFSQNLEHFDLRGNGFHC----GTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CC-EECTT---CCCCTTCCEEECTTCCCBH----HHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cc-chhhH---hhcCCCCCEEEccCCCccC----cCHHHHHhccccceEEECCCchhccCC
Confidence 22 22222 3478899999999886320 111124457788888888877766554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-17 Score=157.42 Aligned_cols=217 Identities=17% Similarity=0.207 Sum_probs=169.7
Q ss_pred EEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCC
Q 007039 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCEL 120 (620)
Q Consensus 42 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~ 120 (620)
+.-.+..+..+|.... ++|++|++++|.+ ..++...+.++++|++|++++|.+..++ ..+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 4445555666666432 5799999999988 6666655789999999999999998876 4789999999999999999
Q ss_pred CC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccc--cchHHHhCCcCCcEEEcCCCccccccc
Q 007039 121 AD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 121 ~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.. +..+.++++|++|++++|.+..++. .++++++|++|++++|. +.. +|.. +.++++|++|++++|.+.....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCCH
Confidence 87 4789999999999999999998766 68999999999999998 555 4554 8999999999999998763211
Q ss_pred cCCCCcchhhhcCCCCCC-EEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccc
Q 007039 196 EGGSNASLVELERLTELT-TLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK 269 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 269 (620)
..+..+.+++.+. .|++++|....++..... .+|+.|++..+...... ...+...++|+.+++++++-
T Consensus 167 -----~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 167 -----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -----GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSCB
T ss_pred -----HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccEEEccCCcc
Confidence 2345555566555 899999998888877666 78999999766543221 11246678888888887544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=155.80 Aligned_cols=174 Identities=25% Similarity=0.272 Sum_probs=137.8
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 114 (620)
.++++.|++.++.+..++....+++|++|++++|.. ..++ . +..+++|++|++++|.+..++. .++++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 677888999988888877766888999999988887 4444 2 5788899999999988887764 468888899999
Q ss_pred ccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++|.+.. + ..++.+++|++|++++|.++.+|.. ++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC
Confidence 99888877 3 5578888999999998888877665 5788899999998887 67777766788888999998888776
Q ss_pred cccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 192 WEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
.. ....++++++|+.|++++|..
T Consensus 195 ~~--------~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 195 SV--------PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CC--------CTTTTTTCTTCCEEECCSSCB
T ss_pred cc--------CHHHHhCCcCCCEEEccCCCc
Confidence 21 224467788888888887753
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=158.14 Aligned_cols=179 Identities=20% Similarity=0.295 Sum_probs=156.0
Q ss_pred hhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 31 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
+.....++++.|++++|.+..++...++++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 131 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNL 131 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC--SCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC--CCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence 33344789999999999999888866999999999999988 55553 6899999999999999999886 8999999
Q ss_pred cEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcc
Q 007039 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 111 ~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
++|++++|.+.....++.+++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|++|++++|.+
T Consensus 132 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTSCC
T ss_pred CEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCCcc
Confidence 9999999999884449999999999999999999886 9999999999999998 777876 89999999999999988
Q ss_pred ccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
. .+..+.++++|+.|++++|.....+..
T Consensus 208 ~----------~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 208 S----------DVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp C----------BCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred C----------ccccccCCCCCCEEEccCCeeecCCee
Confidence 6 122488999999999999987655543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=161.34 Aligned_cols=188 Identities=20% Similarity=0.263 Sum_probs=152.4
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
++..+.+..+.+........+++|+.|++.++.. ..++. +..+++|++|++++|.+..++ .++++++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCc--ccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 3455666666666655555889999999999987 55554 578999999999999998876 688999999999999
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
|.+.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...+.++++|++|++++|.+...
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 172 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSL- 172 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC-
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCcc-
Confidence 99887 4 5689999999999999999988765 7899999999999997 7788887688999999999999987621
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKI 239 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l 239 (620)
....++++++|+.|++++|....++...+. ++|+.|.+
T Consensus 173 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 173 -------PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred -------CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 224478899999999999988777665322 45555544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=164.32 Aligned_cols=215 Identities=16% Similarity=0.171 Sum_probs=141.5
Q ss_pred cEEEEccCCCCcC--CCCcC--------CCCCccEEEcccCCCCCcccchHHH-hcCCCCcEEEcCCCCCCCChhhhhcc
Q 007039 39 PIAISLPHRDIQE--LPERL--------QCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSLPSSLGRL 107 (620)
Q Consensus 39 lr~L~l~~~~~~~--l~~~~--------~~~~Lr~L~l~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~lp~~~~~l 107 (620)
+++|+++++.+.. ++... ++++|++|++++|.+ ...+|..++ ..+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 6666666666632 22222 477888888888776 445565543 67788888888888877777777766
Q ss_pred -----cCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCC---CChhc--cCCCCCCEEeCCCCcccc---ccchH
Q 007039 108 -----INLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ---LPVEI--GQLTRLQLLDLSNCWWLE---VIAPN 172 (620)
Q Consensus 108 -----~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~~~---~~p~~ 172 (620)
++|++|++++|.+.. +..++++++|++|++++|.+.. +|..+ +++++|++|++++|. +. .++..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHH
Confidence 788888888888776 3677888888888888886542 34444 777888888888876 55 34444
Q ss_pred HHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCcc
Q 007039 173 VISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPL 252 (620)
Q Consensus 173 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 252 (620)
.+.++++|++|++++|.+.... ....+..+++|++|++++|....+|..+. ++|+.|+++.+..... |.
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~---p~ 291 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAA-------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRN---PS 291 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSC-------CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSC---CC
T ss_pred HHhcCCCCCEEECCCCcCCccc-------chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCC---hh
Confidence 4567788888888887765211 12344566778888888887777776655 6677777755543322 22
Q ss_pred ccccccccEEEEec
Q 007039 253 LVKSEASRLMMLKG 266 (620)
Q Consensus 253 ~~~~~~L~~L~l~~ 266 (620)
+..+++|+.|++++
T Consensus 292 ~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 292 PDELPQVGNLSLKG 305 (312)
T ss_dssp TTTSCEEEEEECTT
T ss_pred HhhCCCCCEEeccC
Confidence 44455555555554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-17 Score=157.58 Aligned_cols=172 Identities=24% Similarity=0.336 Sum_probs=136.6
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.++++.|+++++.+..++....+++|++|++++|.. ..++. +..+++|++|++++|.+..+|. ++.+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 567888888888888777666888888888888887 55555 5788888888888888887665 788888888888
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.++..+..+++|++|++++|.++.+ ..++.+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC----
Confidence 888888766788888888888888888887 468888888888888887 666665 788888888888888775
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILP 226 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (620)
.+..+.++++|+.|++++|.....+
T Consensus 192 ------~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 ------DLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ------BCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ------CChhhccCCCCCEEECcCCcccCCc
Confidence 2245778888888888887654433
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-17 Score=158.09 Aligned_cols=183 Identities=17% Similarity=0.127 Sum_probs=157.0
Q ss_pred cchhhhhhccccCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh
Q 007039 25 ADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102 (620)
Q Consensus 25 ~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~ 102 (620)
.+...++. +++++++.|++++|.+..++. ..++++|++|++++|.+ ..++.. ..+++|++|++++|.+..+|.
T Consensus 20 ~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~--~~l~~L~~L~Ls~N~l~~l~~ 94 (290)
T 1p9a_G 20 RNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVD--GTLPVLGTLDLSHNQLQSLPL 94 (290)
T ss_dssp SCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEECC--SCCTTCCEEECCSSCCSSCCC
T ss_pred CCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccCC--CCCCcCCEEECCCCcCCcCch
Confidence 44444443 457899999999999977753 33899999999999998 556553 689999999999999999999
Q ss_pred hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcC
Q 007039 103 SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179 (620)
Q Consensus 103 ~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~ 179 (620)
.+..+++|++|++++|.+.. + ..|.++++|++|++++|.++.+|.. +..+++|++|++++|+ +..+|..++.++++
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLEN 173 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTT
T ss_pred hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCC
Confidence 99999999999999999988 4 7799999999999999999988766 5789999999999998 88999887889999
Q ss_pred CcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 180 LEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
|++|++++|.+. ..+..+....+|+.+++++|..
T Consensus 174 L~~L~L~~N~l~---------~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 174 LDTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCEEECCCCcCC---------ccChhhcccccCCeEEeCCCCc
Confidence 999999999886 2345566777999999998864
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=169.70 Aligned_cols=246 Identities=16% Similarity=0.062 Sum_probs=175.7
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~ 103 (620)
......+|. .++++++.|++++|.+..+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.+..+|.
T Consensus 49 ~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~~l~~- 118 (622)
T 3g06_A 49 ESGLTTLPD-CLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPA- 118 (622)
T ss_dssp SSCCSCCCS-CCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCC--SCCCC----CCTTCCEEEECSCCCCCCCC-
T ss_pred CCCcCccCh-hhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcC--CcCCC----CCCCCCEEECcCCcCCCCCC-
Confidence 344444443 456899999999999998887 689999999999998 56775 68999999999999999987
Q ss_pred hhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcE
Q 007039 104 LGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEE 182 (620)
Q Consensus 104 ~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~ 182 (620)
.+.+|++|++++|.+.. |.. +++|++|++++|.++.+|. .+.+|+.|++++|. +..+| ..+++|+.
T Consensus 119 --~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L~~ 185 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGLQE 185 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTCCE
T ss_pred --CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCCcE
Confidence 67899999999999888 543 5899999999999999886 35789999999988 77787 45789999
Q ss_pred EEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEE
Q 007039 183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLM 262 (620)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 262 (620)
|++++|.+... . ...++|+.|++++|....++.. .++|+.|+++.+..... | ..+++|+.|
T Consensus 186 L~Ls~N~l~~l----------~--~~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~l---p--~~l~~L~~L 246 (622)
T 3g06_A 186 LSVSDNQLASL----------P--TLPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSL---P--VLPSELKEL 246 (622)
T ss_dssp EECCSSCCSCC----------C--CCCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCC---C--CCCTTCCEE
T ss_pred EECCCCCCCCC----------C--CccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcC---C--CCCCcCcEE
Confidence 99999987621 1 1247899999999988877753 26788888765543322 1 334566666
Q ss_pred EEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCC
Q 007039 263 MLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS 322 (620)
Q Consensus 263 ~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 322 (620)
+++++ .+...+. .+++|+.|++.++.-. .++.. +..+++|+.|++++++
T Consensus 247 ~Ls~N----~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~---l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 247 MVSGN----RLTSLPM---LPSGLLSLSVYRNQLT-RLPES---LIHLSSETTVNLEGNP 295 (622)
T ss_dssp ECCSS----CCSCCCC---CCTTCCEEECCSSCCC-SCCGG---GGGSCTTCEEECCSCC
T ss_pred ECCCC----CCCcCCc---ccccCcEEeCCCCCCC-cCCHH---HhhccccCEEEecCCC
Confidence 66662 2211111 2345555555544322 22221 2345555555555553
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=152.38 Aligned_cols=174 Identities=22% Similarity=0.288 Sum_probs=142.3
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEcc
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLD 116 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~ 116 (620)
..++++++++.+..+|.... ++++.|++++|.+ ..++...+.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678889998888886543 6899999999987 5555555688999999999999988765 457889999999999
Q ss_pred CCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 117 WCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 117 ~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+.++++|++|++++|.+...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999887 4 6788999999999999999988766 5789999999999987 7788876688999999999999887622
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
....+.++++|+.|++++|...
T Consensus 171 --------~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 --------PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp --------CTTTTTTCTTCCEEECCSCCBC
T ss_pred --------CHHHHhCCCCCCEEEeeCCcee
Confidence 2246778888999999888754
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-18 Score=167.09 Aligned_cols=209 Identities=17% Similarity=0.148 Sum_probs=166.0
Q ss_pred cCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEE
Q 007039 36 QKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 113 (620)
.+++++|++++|.+..++. ..++++|++|++++|.+ ..+++ +..+++|++|++++|.+..++ ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC--EEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC--Ccchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 4589999999999988764 33899999999999988 44444 689999999999999987766 34899999
Q ss_pred EccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHH-hCCcCCcEEEcCCCcc
Q 007039 114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVI-SKLSQLEELYMGNGFS 190 (620)
Q Consensus 114 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l-~~l~~L~~L~l~~~~~ 190 (620)
++++|.+.. +. ..+++|++|++++|.++.++. .++.+++|++|++++|. +..++...+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcC
Confidence 999999887 43 247899999999999998754 68889999999999998 566544334 5799999999999987
Q ss_pred ccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
... .....+++|++|++++|....++..+.. ++|+.|++..+..... .+.+..+++|+.++++++
T Consensus 182 ~~~----------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 182 YDV----------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CEE----------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTC
T ss_pred ccc----------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--hhHhhcCCCCCEEEccCC
Confidence 622 3334588999999999999888887655 8899998866543321 122556677888888773
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=156.72 Aligned_cols=198 Identities=13% Similarity=0.199 Sum_probs=152.8
Q ss_pred hhhhhhccccCCcEEEEccCCCCcCCCCc-C-CCCCccEEEcccCC-CCCcccchHHHhcCCCCcEEEcCC-CCCCCCh-
Q 007039 27 LEKKMEETIQKDPIAISLPHRDIQELPER-L-QCPNLQLFLLYTEG-NGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP- 101 (620)
Q Consensus 27 ~~~~~~~~~~~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp- 101 (620)
...+|. ++.+++.|+++++.+..++.. . ++++|++|++++|. . ..++...|.++++|++|++++ |.+..+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 444454 577899999999999887763 2 88999999999986 5 667766678899999999998 8888876
Q ss_pred hhhhcccCCcEEEccCCCCCChhhhcCCCCCC---EEecCCC-CCCCCChh-ccCCCCCC-EEeCCCCccccccchHHHh
Q 007039 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLE---ILSLAYS-NINQLPVE-IGQLTRLQ-LLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~~~~~p~~~l~ 175 (620)
..|.++++|++|++++|.+...+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|. +..+|..++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC
Confidence 46788999999999999888733378888887 9999999 88888764 78899999 99999887 6788876555
Q ss_pred CCcCCcEEEcCCCc-cccccccCCCCcchhhhcCC-CCCCEEEeecCCCCCCCCcccccCceEEEE
Q 007039 176 KLSQLEELYMGNGF-SGWEKVEGGSNASLVELERL-TELTTLEIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 176 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
. ++|++|++++|. +.. .....++++ ++|+.|++++|....++.. .-++|+.|.+
T Consensus 178 ~-~~L~~L~L~~n~~l~~--------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTV--------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp T-CEEEEEECTTCTTCCE--------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred C-CCCCEEEcCCCCCccc--------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 5 889999999884 541 122456777 8899999998887777665 2245555544
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-16 Score=148.88 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=142.0
Q ss_pred ccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh
Q 007039 24 VADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101 (620)
Q Consensus 24 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp 101 (620)
+.+...++. .++..++.|+++++.+..++.. .++++|++|++++|.+ ..++...+..+++|++|++++|.+..+|
T Consensus 23 ~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 23 GKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp TCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccC
Confidence 344445454 4678899999999999877653 3899999999999998 5666666789999999999999999886
Q ss_pred -hhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCC
Q 007039 102 -SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177 (620)
Q Consensus 102 -~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l 177 (620)
..++.+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++|. +..++...+.++
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 178 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCC
Confidence 567899999999999999988 4 557999999999999999999887 58999999999999998 778887668999
Q ss_pred cCCcEEEcCCCccc
Q 007039 178 SQLEELYMGNGFSG 191 (620)
Q Consensus 178 ~~L~~L~l~~~~~~ 191 (620)
++|++|++++|.+.
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 99999999999876
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=9e-17 Score=169.44 Aligned_cols=209 Identities=18% Similarity=0.143 Sum_probs=163.3
Q ss_pred cCCcEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEE
Q 007039 36 QKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 113 (620)
.++++.|++++|.+..+++ ..++++|++|++++|.+ ...++ +..+++|++|++++|.+..+|. .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC--EEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC--CCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 3479999999999987764 33899999999999987 44444 6889999999999999887764 3899999
Q ss_pred EccCCCCCC-hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHh-CCcCCcEEEcCCCcc
Q 007039 114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-KLSQLEELYMGNGFS 190 (620)
Q Consensus 114 ~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~-~l~~L~~L~l~~~~~ 190 (620)
++++|.+.. +. ..+++|++|++++|.+..+ |..++.+++|++|++++|......|.. +. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH-HhhhCCcccEEecCCCcc
Confidence 999999888 43 2468999999999999876 557889999999999999843334544 54 899999999999988
Q ss_pred ccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 191 GWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
... .....+++|+.|++++|....++..+.. ++|+.|+++.+..... ++.+..+++|+.+++.++
T Consensus 182 ~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 182 YDV----------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEE----------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTC
T ss_pred ccc----------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc--chhhccCCCCCEEEcCCC
Confidence 622 3344688999999999998888887655 8888888866543321 112556677777777773
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=149.86 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=151.2
Q ss_pred cEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCC
Q 007039 39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~ 118 (620)
+.++.+..+.+..+....++++|+.|++++|.. ..++. +..+++|++|++++|.+..++. +.++++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 444556666666655555789999999999987 55654 5789999999999999999887 999999999999999
Q ss_pred CCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCC
Q 007039 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG 198 (620)
Q Consensus 119 ~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 198 (620)
.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++. +.++++|++|++++|.+..
T Consensus 101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~------ 170 (291)
T 1h6t_A 101 KVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD------ 170 (291)
T ss_dssp CCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC------
T ss_pred cCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc------
Confidence 9998767999999999999999999885 68999999999999998 677744 8999999999999998761
Q ss_pred CCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeC
Q 007039 199 SNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG 242 (620)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~ 242 (620)
+..+.++++|+.|++++|....++. +.. ++|+.|++..+
T Consensus 171 ----~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 171 ----IVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ----CGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred ----chhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence 2238899999999999998776653 233 66666666443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=150.34 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=119.7
Q ss_pred CcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCC-CCCChh-hhhcccCCcEEEccC-CCCCC-h-
Q 007039 49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPS-SLGRLINLQTLCLDW-CELAD-I- 123 (620)
Q Consensus 49 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~~~~l~~L~~L~L~~-~~~~~-~- 123 (620)
+..+|. -.+++++|++++|.+ ..++...|..+++|++|++++|. +..++. .+.++++|++|++++ |.+.. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 666666 234888999998887 66776667888999999999996 877764 788889999999988 77877 3
Q ss_pred hhhcCCCCCCEEecCCCCCCCCChhccCCCCCC---EEeCCCCccccccchHHHhCCcCCc-EEEcCCCccccccccCCC
Q 007039 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ---LLDLSNCWWLEVIAPNVISKLSQLE-ELYMGNGFSGWEKVEGGS 199 (620)
Q Consensus 124 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~p~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 199 (620)
..|..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..+|...+.++++|+ +|++++|.+.. .+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~---- 172 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQ---- 172 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-EC----
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cC----
Confidence 678888999999999998888886 78888887 8999888337888877678888888 88888877651 11
Q ss_pred CcchhhhcCCCCCCEEEeecC
Q 007039 200 NASLVELERLTELTTLEIEVP 220 (620)
Q Consensus 200 ~~~~~~l~~l~~L~~L~l~~~ 220 (620)
...+.. ++|+.|++++|
T Consensus 173 ---~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 173 ---GYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp ---TTTTTT-CEEEEEECTTC
T ss_pred ---HhhcCC-CCCCEEEcCCC
Confidence 112222 56666666666
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=164.26 Aligned_cols=173 Identities=24% Similarity=0.327 Sum_probs=151.5
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
+.+++.|+++++.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.+..+| .+..+++|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 778999999999999888777999999999999987 55665 689999999999999998887 5889999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+..++.+..+++|+.|++++|.+..+ ..++.+++|+.|++++|. +..+++ +..+++|+.|++++|.+.
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~---- 188 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 188 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC----
Confidence 999998877799999999999999999988 578999999999999998 677766 899999999999999876
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (620)
.+..+..+++|+.|++++|.....|.
T Consensus 189 ------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 189 ------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp ------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred ------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 23568899999999999887655443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=165.98 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=127.8
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
.+++|++|++++|.+ ..+++..+..+++|++|++++|.+...++ ++.+++|++|++++|.+.... ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEE
Confidence 456899999999988 55665556899999999999999887665 889999999999999877621 238999999
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhc-CCCCCCEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTL 215 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 215 (620)
+++|.+..+|. ..+++|++|++++|. +..+++..++.+++|++|++++|.+... .+..+. ++++|+.|
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEE
Confidence 99999988765 357899999999998 6666554488999999999999988632 234554 78899999
Q ss_pred EeecCCCCCCCCcccccCceEEEE
Q 007039 216 EIEVPDAEILPPDFVSVELQRYKI 239 (620)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l 239 (620)
++++|....++.....++|+.|++
T Consensus 175 ~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 175 NLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEEC
T ss_pred ecCCCccccccccccCCCCCEEEC
Confidence 999988765544322244444444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-17 Score=161.63 Aligned_cols=217 Identities=15% Similarity=0.109 Sum_probs=124.1
Q ss_pred CCcEEEEccCCCCcCCCCcC-CC--CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC--ChhhhhcccCCc
Q 007039 37 KDPIAISLPHRDIQELPERL-QC--PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINLQ 111 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~~~~l~~L~ 111 (620)
...++++++++.+. +... .+ ++++.|++.++.. ...+..+ ..+++|++|++++|.+.. +|..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM--DQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE--CSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccc--cccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34667777766553 1111 33 6677777777665 2222222 457777777777776653 666677777777
Q ss_pred EEEccCCCCCC--hhhhcCCCCCCEEecCCC-CCC--CCChhccCCCCCCEEeCCCCccccc--cchHHHhCCc-CCcEE
Q 007039 112 TLCLDWCELAD--IAAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNCWWLEV--IAPNVISKLS-QLEEL 183 (620)
Q Consensus 112 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~~~~--~p~~~l~~l~-~L~~L 183 (620)
+|++++|.+.+ +..++++++|++|++++| .++ .+|..+.++++|++|++++|..+.. ++. .+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEE
Confidence 77777777664 566777777777777777 566 3566667777777777777722443 233 366677 77777
Q ss_pred EcCCCc--cccccccCCCCcchhhhcCCCCCCEEEeecCC-CC-CCCCcccc-cCceEEEEEeCCCCCCCCCcccccccc
Q 007039 184 YMGNGF--SGWEKVEGGSNASLVELERLTELTTLEIEVPD-AE-ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEA 258 (620)
Q Consensus 184 ~l~~~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~ 258 (620)
++++|. +. +......++++++|++|++++|. .. ..+..+.. ++|+.|++..+..........+..+++
T Consensus 201 ~l~~~~~~~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 201 NLSGYRKNLQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp ECCSCGGGSC-------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred EeCCCcccCC-------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 777763 22 11233445667777777777665 22 22222222 455555553332111111112444555
Q ss_pred ccEEEEec
Q 007039 259 SRLMMLKG 266 (620)
Q Consensus 259 L~~L~l~~ 266 (620)
|+.|++++
T Consensus 274 L~~L~l~~ 281 (336)
T 2ast_B 274 LKTLQVFG 281 (336)
T ss_dssp CCEEECTT
T ss_pred CCEEeccC
Confidence 66666655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=150.40 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=141.3
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+++.+.+.++.+..++....+++|++|++++|.+ ..++ . +..+++|++|++++|.+..++. +.++++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 445667778888888777555889999999999987 5666 3 5789999999999999999887 889999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+.+.+.+.. .+|++|++++|.++.+| .+.++++|++|++++|. +..++. +..+++|++|++++|.+..
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~--- 164 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN--- 164 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB---
T ss_pred CCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc---
Confidence 9999888433444 99999999999999886 68999999999999988 777764 8899999999999998761
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILP 226 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (620)
...+.++++|+.|++++|.....+
T Consensus 165 -------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 -------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred -------hHHhccCCCCCEEeCCCCcccCCc
Confidence 156788899999999988755443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=140.64 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=102.8
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCE
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 134 (620)
++++|++|++++|.+ ..++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 566777777777766 4555 2 467777777777777665554 46677777777777777665 566777777777
Q ss_pred EecCCCCCCC-CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCC
Q 007039 135 LSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT 213 (620)
Q Consensus 135 L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 213 (620)
|++++|.+.. .|..++++++|++|++++|..++.+|. +..+++|++|++++|.+. .+..+.++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~----------~~~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH----------DYRGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC----------CCTTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc----------ChHHhccCCCCC
Confidence 7777777763 566677777777777777765666663 677777777777777665 123566777777
Q ss_pred EEEeecCCCC
Q 007039 214 TLEIEVPDAE 223 (620)
Q Consensus 214 ~L~l~~~~~~ 223 (620)
.|++++|..+
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 7777777643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=139.00 Aligned_cols=148 Identities=19% Similarity=0.257 Sum_probs=112.4
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~L~ 114 (620)
.+++++|+++++.+..++....+++|++|++++|.. ..++ . +..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 567888888888888777555788888888888854 4443 2 5778888888888888765 566777888888888
Q ss_pred ccCCCCCC--hhhhcCCCCCCEEecCCCC-CCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELAD--IAAIGQLKKLEILSLAYSN-INQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~--~~~i~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++|.+.+ +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcccC
Confidence 88888775 6778888888888888886 77776 67888888888888877 666663 788888888888877654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=139.66 Aligned_cols=151 Identities=22% Similarity=0.265 Sum_probs=129.1
Q ss_pred CCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L 115 (620)
...+.++.+++.+..+|... .++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .+..+++|++|++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeCCEeEccCCCcCccCCCC-CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 34567888888888888654 38899999999988 55555556889999999999999988874 5689999999999
Q ss_pred cCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 116 DWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 116 ~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|.+.. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999887 4 56789999999999999999999999999999999999987 78888776889999999999998775
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=151.47 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=153.3
Q ss_pred cCCcEEEEccCCCCc-CCCCc---CCCCCccEEEcccCCCCCcccchHHHhcC-----CCCcEEEcCCCCCCCCh-hhhh
Q 007039 36 QKDPIAISLPHRDIQ-ELPER---LQCPNLQLFLLYTEGNGPMQVSDHFFEGM-----EGLKVLQFPGIGSSSLP-SSLG 105 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~lp-~~~~ 105 (620)
.+++++|++++|.+. .+|.. ..+++|++|++++|.+ ..+|.. +..+ ++|++|++++|.+..++ ..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW--ATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC--SSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC--cchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 688999999999996 45553 4899999999999998 444644 4555 99999999999998876 7899
Q ss_pred cccCCcEEEccCCCCCC----hhhh--cCCCCCCEEecCCCCCCCCC---hh-ccCCCCCCEEeCCCCccccc-cchHHH
Q 007039 106 RLINLQTLCLDWCELAD----IAAI--GQLKKLEILSLAYSNINQLP---VE-IGQLTRLQLLDLSNCWWLEV-IAPNVI 174 (620)
Q Consensus 106 ~l~~L~~L~L~~~~~~~----~~~i--~~L~~L~~L~l~~~~l~~lp---~~-i~~l~~L~~L~l~~~~~~~~-~p~~~l 174 (620)
++++|++|++++|.+.. +..+ +++++|++|++++|.++.+| .. +.++++|++|++++|. +.. .|...+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh
Confidence 99999999999999653 3445 89999999999999998554 23 4578999999999998 554 433336
Q ss_pred hCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCC
Q 007039 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGD 243 (620)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~ 243 (620)
..+++|++|++++|.+. . .+..+. ++|++|++++|....+|. +.. ++|+.|++....
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~--------ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-Q--------VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCTTCCEEECTTSCCS-S--------CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhcCCCCEEECCCCccC-h--------hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 77899999999999886 1 122333 789999999999988866 444 889988885443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=139.77 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=120.1
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~ 118 (620)
+.+...++.+..+|... .++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .+.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666666666433 45788888888877 56666666788888888888888887764 4578888888888888
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
.+.. + ..+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 8777 4 4567888888888888888877665 6778888888888877 66777766778888888888887654
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
..+++|+.|+++.+.
T Consensus 162 -----------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 162 -----------CTCPGIRYLSEWINK 176 (208)
T ss_dssp -----------CCTTTTHHHHHHHHH
T ss_pred -----------cCCCCHHHHHHHHHh
Confidence 234456666666554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-16 Score=154.48 Aligned_cols=179 Identities=13% Similarity=0.028 Sum_probs=93.6
Q ss_pred CCCCccEEEcccCCCCCcccchHHH-hcCCCCcEEEcCCCCCCCC-h----hhhhcccCCcEEEccCCCCCC--hhhhcC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSL-P----SSLGRLINLQTLCLDWCELAD--IAAIGQ 128 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~l-p----~~~~~l~~L~~L~L~~~~~~~--~~~i~~ 128 (620)
.+++|++|++++|.. ....|..++ ..+++|++|++++|.+... + ..+..+++|++|++++|.+.. +..++.
T Consensus 89 ~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 344566666666655 333333322 5566666666666665531 1 223356666666666666554 355666
Q ss_pred CCCCCEEecCCCCCCC---CC--hhccCCCCCCEEeCCCCccccccchH---HHhCCcCCcEEEcCCCccccccccCCCC
Q 007039 129 LKKLEILSLAYSNINQ---LP--VEIGQLTRLQLLDLSNCWWLEVIAPN---VISKLSQLEELYMGNGFSGWEKVEGGSN 200 (620)
Q Consensus 129 L~~L~~L~l~~~~l~~---lp--~~i~~l~~L~~L~l~~~~~~~~~p~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 200 (620)
+++|++|++++|.+.. ++ ..++.+++|++|++++|. ++.++.. .+..+++|++|++++|.+....+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----- 241 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVN----- 241 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-----
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccch-----
Confidence 6666666666665432 22 123456666666666665 4433321 24556666666666666542111
Q ss_pred cchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCC
Q 007039 201 ASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGD 243 (620)
Q Consensus 201 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 243 (620)
..+..+..+++|++|++++|....+|..+. ++|+.|+++.+.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~ 283 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNR 283 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCC
T ss_pred hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCc
Confidence 111222223566666666666655555432 455555554443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=137.67 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=105.0
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~ 118 (620)
+.++.+++.+..+|.... ++++.|++++|.+ ..++...|..+++|++|++++|.+..+ |..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456677777777765432 5777788877776 556555567777788888887777765 567777777888888777
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
.+.. + ..|..+++|++|++++|.++.+ |..+..+++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776 4 4467777777787777777766 4457777777777777776 66666655677777777777777654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-15 Score=136.89 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=117.1
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCccc-chHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQV-SDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~ 117 (620)
+.++++++.+..+|... .+.+++|++++|.+ ..+ +..+|..+++|++|++++|.+..++. .|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888888877643 34568889988887 444 44556788899999999988887654 788888999999999
Q ss_pred CCCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 118 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
|.+.. +..|..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88877 35688889999999999888876 5668888889999998887 66665555888888888888888765
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=156.63 Aligned_cols=184 Identities=21% Similarity=0.258 Sum_probs=152.2
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
.+.++.+..+.+..+.....+++|+.|++.+|.+ ..++. +..+++|++|++++|.+..++. +.++++|++|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 3555666777776665556889999999999987 55664 5889999999999999999887 89999999999999
Q ss_pred CCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccC
Q 007039 118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG 197 (620)
Q Consensus 118 ~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~ 197 (620)
|.+..++.+..+++|++|++++|.+..+| .+..+++|+.|++++|. +..++. +..+++|+.|++++|.+..
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~----- 167 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD----- 167 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC-----
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC-----
Confidence 99988778999999999999999999885 68999999999999998 677744 8999999999999998761
Q ss_pred CCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEe
Q 007039 198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRI 241 (620)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~ 241 (620)
. ..+..+++|+.|++++|.+..++. +.. ++|+.|.+..
T Consensus 168 ----~-~~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 168 ----I-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFS 206 (605)
T ss_dssp ----C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCS
T ss_pred ----c-hhhccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccC
Confidence 1 228899999999999998776643 333 6677776643
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=149.16 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=69.2
Q ss_pred ccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcE-EEcCCCCCCCC-hhhhhcccCC
Q 007039 35 IQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKV-LQFPGIGSSSL-PSSLGRLINL 110 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~-L~l~~~~~~~l-p~~~~~l~~L 110 (620)
++.++++|++++|.+..+++. .++++|++|++++|.+ ...++..+|.+++.++. +.+.+|++..+ |..|.++++|
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-CCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 344555555555555555432 1455555555555544 23344444445544443 33334445444 2344555555
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCC-CCCCCChh-ccCC-CCCCEEeCCCCccccccchHHHhCCcCCcEEEc
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPVE-IGQL-TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~l-~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 185 (620)
++|++++|.+.. + ..+....++.+|++.++ .+..+|.. +..+ ..++.|++++|. ++.++.. .....+|+++++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~f~~~~L~~l~l 184 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-AFNGTQLDELNL 184 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-SSTTEEEEEEEC
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-hccccchhHHhh
Confidence 555555555444 2 23333444445555443 44444432 2222 235555555554 4445444 223344555555
Q ss_pred CC
Q 007039 186 GN 187 (620)
Q Consensus 186 ~~ 187 (620)
.+
T Consensus 185 ~~ 186 (350)
T 4ay9_X 185 SD 186 (350)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=139.30 Aligned_cols=147 Identities=21% Similarity=0.214 Sum_probs=131.7
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
..++++.|+++++.+..++....+++|++|++++|.+ ..++. +..+++|++|++++|.+..+|.... .+|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 3788999999999999998666999999999999988 66666 6899999999999999999886443 9999999
Q ss_pred ccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++|.+..++.+..+++|++|++++|.++.+| .++.+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence 99999998667999999999999999999997 79999999999999998 666633 899999999999998876
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=146.80 Aligned_cols=172 Identities=19% Similarity=0.184 Sum_probs=116.5
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHh-cCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~ 117 (620)
+.++.+++.+..+|... .+.++.|++++|.+ ..++...+. .+++|++|++++|.+..++ ..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777777766533 24577777777776 555555555 7777888888777777665 4577777788888887
Q ss_pred CCCCC-h-hhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHH---hCCcCCcEEEcCCCccc
Q 007039 118 CELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVI---SKLSQLEELYMGNGFSG 191 (620)
Q Consensus 118 ~~~~~-~-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l---~~l~~L~~L~l~~~~~~ 191 (620)
|.+.. + ..|..+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77776 3 4577777888888887777765 4567777788888887776 667776644 56777788887777765
Q ss_pred cccccCCCCcchhhhcCCCC--CCEEEeecCCCC
Q 007039 192 WEKVEGGSNASLVELERLTE--LTTLEIEVPDAE 223 (620)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 223 (620)
. .....+..++. ++.|++++|...
T Consensus 177 ~--------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 K--------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C--------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred c--------cCHHHhhhccHhhcceEEecCCCcc
Confidence 1 12245555555 367777776543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-15 Score=147.11 Aligned_cols=195 Identities=17% Similarity=0.246 Sum_probs=155.8
Q ss_pred CCcEEEEccCCCCcCCC-CcCCCCCccEEEcccCCCCCcc-cchHHHhcCCCCcEEEcCCCCCC-CChhhhhcccCCcEE
Q 007039 37 KDPIAISLPHRDIQELP-ERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINLQTL 113 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L 113 (620)
.+++.+.+.++.+.... ...++++|++|++++|.. ... ++. .+..+++|++|++++|.+. ..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI-EVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE-CHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCc-CHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 78999999999886554 344899999999999986 333 444 4689999999999999987 467889999999999
Q ss_pred EccCC-CCCC---hhhhcCCCCCCEEecCCC-CCCC--CChhccCCC-CCCEEeCCCCc-cc--cccchHHHhCCcCCcE
Q 007039 114 CLDWC-ELAD---IAAIGQLKKLEILSLAYS-NINQ--LPVEIGQLT-RLQLLDLSNCW-WL--EVIAPNVISKLSQLEE 182 (620)
Q Consensus 114 ~L~~~-~~~~---~~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~~--~~~p~~~l~~l~~L~~ 182 (620)
++++| .+.+ +..+.++++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..++.. +.++++|++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCE
Confidence 99999 5774 466889999999999999 8884 778889999 99999999995 23 344543 789999999
Q ss_pred EEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCC---cccc-cCceEEEEEeC
Q 007039 183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP---DFVS-VELQRYKIRIG 242 (620)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~-~~L~~L~l~~~ 242 (620)
|++++|... ....+..+.++++|++|++++|. ...+. .+.. ++|+.|++..+
T Consensus 227 L~l~~~~~l-------~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVML-------KNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTC-------CGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcC-------CHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999832 13455678899999999999986 11122 2333 89999998644
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=145.64 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=56.4
Q ss_pred EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--h-hhhcCCCCCCE-Eec
Q 007039 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--I-AAIGQLKKLEI-LSL 137 (620)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~-~~i~~L~~L~~-L~l 137 (620)
+++.+++.. .++|..+ .+++++|++++|+++.+|. .|.++++|++|+|++|.+.+ + ..|.++++|++ +.+
T Consensus 13 ~v~C~~~~L--t~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKV--TEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTC--CSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCC--CccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 444444443 4444432 2345555555555555543 34555555555555555433 1 34455555443 333
Q ss_pred CCCCCCCCC-hhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 138 AYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 138 ~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
.++.+..+| ..+..+++|++|++++|. +..+|...+....++..|++.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEES
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhcc
Confidence 334555442 334555555555555554 4444443233444444555433
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-15 Score=154.89 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=130.2
Q ss_pred cCCcEEEEccCCCCcC-----CCC-cCCCCCccEEEcccCCC--CCcccchHH------HhcCCCCcEEEcCCCCCCC--
Q 007039 36 QKDPIAISLPHRDIQE-----LPE-RLQCPNLQLFLLYTEGN--GPMQVSDHF------FEGMEGLKVLQFPGIGSSS-- 99 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~-----l~~-~~~~~~Lr~L~l~~~~~--~~~~~~~~~------~~~l~~Lr~L~l~~~~~~~-- 99 (620)
.+++++|++++|.+.. +.. ..++++|++|++++|.. ....+|..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5678999999987743 222 22788999999988754 123445443 3678899999999998875
Q ss_pred ---ChhhhhcccCCcEEEccCCCCCC--hhh----hcCC---------CCCCEEecCCCCCC--CCC---hhccCCCCCC
Q 007039 100 ---LPSSLGRLINLQTLCLDWCELAD--IAA----IGQL---------KKLEILSLAYSNIN--QLP---VEIGQLTRLQ 156 (620)
Q Consensus 100 ---lp~~~~~l~~L~~L~L~~~~~~~--~~~----i~~L---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~ 156 (620)
+|..+.++++|++|++++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 67788888999999999998764 233 3334 88999999998876 444 4677888999
Q ss_pred EEeCCCCccccc-----cchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 157 LLDLSNCWWLEV-----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 157 ~L~l~~~~~~~~-----~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
+|++++|. +.. +.+..+.++++|++|++++|.+.... .......+.++++|+.|++++|...
T Consensus 191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCCc
Confidence 99999886 441 22213778889999999888764110 0123456778888999999888754
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=132.91 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=120.1
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
+.+++.++.. ..+|..+ .+.+++|++++|.+..++. .+..+++|++|++++|.+.. +..|.++++|++|+++
T Consensus 14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 5788888876 6777654 3789999999999988764 78889999999999999887 5789999999999999
Q ss_pred CCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEe
Q 007039 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (620)
Q Consensus 139 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (620)
+|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+... ....+..+++|+.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI--------AKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEE--------CHHHHhCCCCCCEEEe
Confidence 9999988876 5789999999999988 7777666688999999999999887622 2245777888899988
Q ss_pred ecCCC
Q 007039 218 EVPDA 222 (620)
Q Consensus 218 ~~~~~ 222 (620)
++|..
T Consensus 160 ~~N~~ 164 (220)
T 2v9t_B 160 AQNPF 164 (220)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 87753
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-14 Score=148.34 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=135.6
Q ss_pred CCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEcc
Q 007039 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 116 (620)
.+++.|+++++.+..+|... .++|++|++++|.+ ..+| ..+++|++|++++|.+..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 47999999999998888754 48899999999988 5777 347899999999999988888 665 89999999
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
+|.+.. |. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|++++|.+.. .+
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~-lp 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLES-LP 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSS-CC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCc-hh
Confidence 999888 44 68999999999999999886 67899999999988 677887 55 899999999988761 11
Q ss_pred cCCCCcchhhh-cCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEE
Q 007039 196 EGGSNASLVEL-ERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (620)
Q Consensus 196 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (620)
.....+ .....|+.|++++|.+..+|..+.. ++|+.|++.
T Consensus 197 -----~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 197 -----AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp -----CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred -----hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 100011 1112238999999888888876544 555555553
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=143.31 Aligned_cols=190 Identities=16% Similarity=0.088 Sum_probs=145.8
Q ss_pred cCCcEEEEccCCCCcCC-CCc---CCCCCccEEEcccCCCCCcccc---hHHHhcCCCCcEEEcCCCCCCCCh-hhhhcc
Q 007039 36 QKDPIAISLPHRDIQEL-PER---LQCPNLQLFLLYTEGNGPMQVS---DHFFEGMEGLKVLQFPGIGSSSLP-SSLGRL 107 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l-~~~---~~~~~Lr~L~l~~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l 107 (620)
.+++++|++++|.+... +.. .++++|++|++++|.+ ....+ ...+..+++|++|++++|.+..++ ..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSW-ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCC-SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccc-cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45699999999998543 333 5799999999999988 33322 222357999999999999998765 688999
Q ss_pred cCCcEEEccCCCCCC----h--hhhcCCCCCCEEecCCCCCCCCChh----ccCCCCCCEEeCCCCcccccc-chHHHhC
Q 007039 108 INLQTLCLDWCELAD----I--AAIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNCWWLEVI-APNVISK 176 (620)
Q Consensus 108 ~~L~~L~L~~~~~~~----~--~~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~-p~~~l~~ 176 (620)
++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +... |.. +..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHh
Confidence 999999999999653 1 2347899999999999999877653 5788999999999998 5554 654 566
Q ss_pred C---cCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEE
Q 007039 177 L---SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (620)
Q Consensus 177 l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (620)
+ ++|++|++++|.+... +..+. ++|++|++++|....++.. .. ++|+.|++.
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~l---------p~~~~--~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~L~ 302 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQV---------PKGLP--AKLRVLDLSSNRLNRAPQP-DELPEVDNLTLD 302 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSC---------CSCCC--SCCSCEECCSCCCCSCCCT-TSCCCCSCEECS
T ss_pred ccCcCcCCEEECCCCCCCch---------hhhhc--CCCCEEECCCCcCCCCchh-hhCCCccEEECc
Confidence 5 6999999999988721 12222 7899999999998876542 22 566666553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=132.89 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=128.4
Q ss_pred cccCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L 110 (620)
.+++++++|+++++.+..++... ++++|++|++++|.+ ..++...|..+++|++|++++|.+..+|. .++++++|
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 45788999999999998887643 899999999999988 67777777899999999999999998875 47899999
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
++|++++|.+.. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|... +.+++|+.|++..
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHH
Confidence 999999999987 4 5689999999999999999988876 788999999999998632 4456788888777
Q ss_pred Cccccc
Q 007039 188 GFSGWE 193 (620)
Q Consensus 188 ~~~~~~ 193 (620)
+.+.+.
T Consensus 175 n~~~g~ 180 (208)
T 2o6s_A 175 NKHSGV 180 (208)
T ss_dssp HHCTTT
T ss_pred HhCCce
Confidence 776643
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=143.91 Aligned_cols=123 Identities=22% Similarity=0.245 Sum_probs=57.5
Q ss_pred EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhh-cccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLG-RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~-~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
+++++++.. ..+|..+ .+.+++|++++|.+..++. .+. ++.+|++|++++|.+.. +..|.++++|++|+++
T Consensus 22 ~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 444444444 3344322 2334555555555544432 233 44555555555555444 2344555555555555
Q ss_pred CCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 139 YSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 139 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+|.++.+|. .+..+++|++|++++|. +..+++..+.++++|++|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCC
Confidence 555554433 24445555555555544 34443333455555555555555443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=131.10 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=121.4
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh--hhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
++++++++.. ..+|..+ .+.+++|++++|.+..++ ..++++++|++|++++|.+.. + ..|.++++|++|++
T Consensus 14 ~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 5889998887 6677654 456789999999998874 358899999999999999887 3 58999999999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
++|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+... ....++.+++|+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEE
Confidence 99999988765 8889999999999988 6777655588999999999999987622 235678889999999
Q ss_pred eecCCC
Q 007039 217 IEVPDA 222 (620)
Q Consensus 217 l~~~~~ 222 (620)
+++|..
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 988763
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=146.06 Aligned_cols=182 Identities=11% Similarity=0.160 Sum_probs=103.1
Q ss_pred cCCcEEEEccCCCCcCCCC-----cC-CCC-CccEEEcccCCCCCcccchHHHhcC-----CCCcEEEcCCCCCCCC-hh
Q 007039 36 QKDPIAISLPHRDIQELPE-----RL-QCP-NLQLFLLYTEGNGPMQVSDHFFEGM-----EGLKVLQFPGIGSSSL-PS 102 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~-----~~-~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~l-p~ 102 (620)
.+++++|++++|.+...+. .. +++ +|++|++++|.+ .......+..+ +.|++|++++|.+... +.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4557777777777765542 22 566 677777777766 33322222332 7777777777776543 33
Q ss_pred h----hhcc-cCCcEEEccCCCCCC--hhh----hcCC-CCCCEEecCCCCCC-----CCChhccCCC-CCCEEeCCCCc
Q 007039 103 S----LGRL-INLQTLCLDWCELAD--IAA----IGQL-KKLEILSLAYSNIN-----QLPVEIGQLT-RLQLLDLSNCW 164 (620)
Q Consensus 103 ~----~~~l-~~L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~ 164 (620)
. +..+ ++|++|++++|.+.+ +.. +..+ ++|++|++++|.+. .++..+..++ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2 3333 677777777777654 222 3332 57777777777666 3344455554 77777777776
Q ss_pred cccccchHH----HhCC-cCCcEEEcCCCccccccccCCCCcchhhhcC-CCCCCEEEeecCCCCC
Q 007039 165 WLEVIAPNV----ISKL-SQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDAEI 224 (620)
Q Consensus 165 ~~~~~p~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~ 224 (620)
++..+... +... ++|++|++++|.+.... .......+.. .++|++|++++|....
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANLLGLKS----YAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC----HHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH----HHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 44444322 3333 47777777777665110 0112233444 3467777777666543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-15 Score=151.04 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=95.9
Q ss_pred CCCCccEEEcccCCCCCcccchH---HHhcCCCCcEEEcCCCCCCC----Chhhh-------hcccCCcEEEccCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDH---FFEGMEGLKVLQFPGIGSSS----LPSSL-------GRLINLQTLCLDWCELAD 122 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~---~~~~l~~Lr~L~l~~~~~~~----lp~~~-------~~l~~L~~L~L~~~~~~~ 122 (620)
.+++|++|++++|.+ ....+.. .+..+++|++|++++|.+.. +|..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEE-CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCC-CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 567788888877765 2221211 13467778888887765542 34433 567777777777777654
Q ss_pred ------hhhhcCCCCCCEEecCCCCCC-----CCChhccCC---------CCCCEEeCCCCccc-cccch--HHHhCCcC
Q 007039 123 ------IAAIGQLKKLEILSLAYSNIN-----QLPVEIGQL---------TRLQLLDLSNCWWL-EVIAP--NVISKLSQ 179 (620)
Q Consensus 123 ------~~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p~--~~l~~l~~ 179 (620)
+..+.++++|++|++++|.+. .++..+..+ ++|++|++++|... ..++. ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 245677777777777777665 233334344 77777777777622 22331 23566777
Q ss_pred CcEEEcCCCccccccccCCCCcchh-hhcCCCCCCEEEeecCCC
Q 007039 180 LEELYMGNGFSGWEKVEGGSNASLV-ELERLTELTTLEIEVPDA 222 (620)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 222 (620)
|++|++++|.+.... ...... .+.++++|+.|++++|..
T Consensus 189 L~~L~L~~n~l~~~g----~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEG----IEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CCEEECCSSCCCHHH----HHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred cCEEECcCCCCCHhH----HHHHHHHHhhcCCCccEEECcCCCC
Confidence 777777777654100 001222 566677777777776654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=129.15 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=123.5
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
-..++++++.. ..+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.+.. + ..+..+++|++|++
T Consensus 21 ~~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 45788888776 7788754 48999999999999887 6778999999999999999887 4 56789999999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
++|.++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+... ....+.++++|+.|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLTHAY 165 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCCEEE
Confidence 99999988765 5889999999999988 7788877 78999999999999987621 124577889999999
Q ss_pred eecCCCC
Q 007039 217 IEVPDAE 223 (620)
Q Consensus 217 l~~~~~~ 223 (620)
+++|...
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 9888654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.9e-14 Score=125.05 Aligned_cols=137 Identities=23% Similarity=0.188 Sum_probs=73.0
Q ss_pred CCCcEEEcCCCCCC--CChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCC-CChhccCCCCCCEEeCC
Q 007039 85 EGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~ 161 (620)
++|++|++++|.+. .+|..+..+++|++|++++|.+.....+..+++|++|++++|.+.. +|..+.++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 45555666655555 4555555556666666666555544455555666666666665554 45445556666666666
Q ss_pred CCccccccch-HHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCC
Q 007039 162 NCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227 (620)
Q Consensus 162 ~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 227 (620)
+|. +..++. ..+..+++|++|++++|.+..... .....+..+++|+.|+++.+....+|.
T Consensus 104 ~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 104 GNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhccc
Confidence 654 444431 225556666666666555441100 001245556666666666655544443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=125.12 Aligned_cols=130 Identities=20% Similarity=0.155 Sum_probs=85.4
Q ss_pred cCCcEEEEccCCCCc--CCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~ 111 (620)
++++++|++++|.+. .++... .+++|++|++++|.+ ..+ ..+..+++|++|++++|.+.. +|..+.++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--CCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--CCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 566777777777776 666554 667777777777766 333 224667777777777777665 566666677777
Q ss_pred EEEccCCCCCC-h--hhhcCCCCCCEEecCCCCCCCCCh----hccCCCCCCEEeCCCCccccccc
Q 007039 112 TLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 112 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p 170 (620)
+|++++|.+.. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|. ..++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 77777777665 3 566667777777777776666665 56666777777766665 44444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-14 Score=142.82 Aligned_cols=146 Identities=12% Similarity=0.155 Sum_probs=74.7
Q ss_pred EccCCCCcCC-CCcCCC-CCccEEEcccCCCCCcccch----HHHhcCC-CCcEEEcCCCCCCCC-hhhhhcc-----cC
Q 007039 43 SLPHRDIQEL-PERLQC-PNLQLFLLYTEGNGPMQVSD----HFFEGME-GLKVLQFPGIGSSSL-PSSLGRL-----IN 109 (620)
Q Consensus 43 ~l~~~~~~~l-~~~~~~-~~Lr~L~l~~~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~~~~l-p~~~~~l-----~~ 109 (620)
.++.+.+... +..... ++|++|++++|.+ ...+. ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3444555322 222232 3366666666665 33333 3345565 666666666666543 4444443 66
Q ss_pred CcEEEccCCCCCC--hhh----hcCC-CCCCEEecCCCCCCCCChh-----ccC-CCCCCEEeCCCCccccccchH----
Q 007039 110 LQTLCLDWCELAD--IAA----IGQL-KKLEILSLAYSNINQLPVE-----IGQ-LTRLQLLDLSNCWWLEVIAPN---- 172 (620)
Q Consensus 110 L~~L~L~~~~~~~--~~~----i~~L-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~l~~~~~~~~~p~~---- 172 (620)
|++|++++|.+.+ +.. +..+ ++|++|++++|.+...+.. +.. .++|++|++++|. ++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence 6666666666553 222 3333 5666666666666544321 223 2466666666665 3321111
Q ss_pred HHhCCc-CCcEEEcCCCccc
Q 007039 173 VISKLS-QLEELYMGNGFSG 191 (620)
Q Consensus 173 ~l~~l~-~L~~L~l~~~~~~ 191 (620)
.+...+ +|++|++++|.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGG
T ss_pred HHhcCCccccEeeecCCCCc
Confidence 133443 6666666666554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=142.27 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=135.6
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
+.++++.|++++|.+..+| ..+++|++|++++|.+ ..+|. + .. +|++|++++|.+..+|. .+++|++|+
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEe
Confidence 4688999999999999888 5689999999999988 55777 3 33 99999999999999988 689999999
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCC-------cEEEcC
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL-------EELYMG 186 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L-------~~L~l~ 186 (620)
+++|.+.. |. .+++|++|++++|.++.+|. +. ++|++|++++|. +..+|. +.. +| +.|+++
T Consensus 147 Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 147 ADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECC
T ss_pred CCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecC
Confidence 99999988 44 68999999999999999998 66 999999999997 778887 443 67 999999
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCC
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI 224 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (620)
+|.+. ..+..+.++++|+.|++++|....
T Consensus 216 ~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 216 ENRIT---------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCC---------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCcce---------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99886 344567779999999999998643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=118.84 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=79.4
Q ss_pred cCCcEEEEccCCCCc--CCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~ 111 (620)
++++++|+++++.+. .++... .+++|++|++++|.. ..+ ..+..+++|++|++++|.+.. +|..++++++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 455777777777776 566553 677777777777765 333 224667777777777777665 666666677777
Q ss_pred EEEccCCCCCC-h--hhhcCCCCCCEEecCCCCCCCCCh----hccCCCCCCEEeCC
Q 007039 112 TLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDLS 161 (620)
Q Consensus 112 ~L~L~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~ 161 (620)
+|++++|.+.+ + ..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777776665 3 566666666666666666666554 45666666666654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=120.16 Aligned_cols=124 Identities=23% Similarity=0.281 Sum_probs=71.8
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
++++.|++++|......+|.. +..+++|++|++++|.+..+ ..++++++|++|++++|.+.. |..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 456666666665511244443 35566666666666666555 445666666666666666554 34445566666666
Q ss_pred cCCCCCCCCC--hhccCCCCCCEEeCCCCccccccch---HHHhCCcCCcEEEc
Q 007039 137 LAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAP---NVISKLSQLEELYM 185 (620)
Q Consensus 137 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~---~~l~~l~~L~~L~l 185 (620)
+++|.++.+| ..++.+++|++|++++|. +..++. ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 6666666543 456666666666666665 444444 33556666666554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=150.84 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=100.1
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCC--CcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNG--PMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~ 112 (620)
..+++++.+.++.+...+... ....|+.+.+.+.... ...++...+..++.|++|+|++|.+..+|..+.++.+|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 455888999888886655433 4444554444332210 1124555578899999999999999999988889999999
Q ss_pred EEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 113 LCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 113 L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
|+|++|.+.. |..|++|++|++|+|++|.++.+|..++++++|++|++++|. ++.+|.. ++++++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999888 788999999999999999999999999999999999999987 7889887 899999999999999887
Q ss_pred cc
Q 007039 192 WE 193 (620)
Q Consensus 192 ~~ 193 (620)
..
T Consensus 330 ~~ 331 (727)
T 4b8c_D 330 KQ 331 (727)
T ss_dssp SH
T ss_pred CC
Confidence 43
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=120.96 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=76.9
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCC
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY 139 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~ 139 (620)
++++++++.. ..+|..+ .+.|++|++++|.+..+|..+.++++|++|++++|.+.. +..|.++++|++|++++
T Consensus 13 ~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 3455555554 4455432 346666666666666666666666666666666666665 24566666666666666
Q ss_pred CCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 140 SNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 140 ~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
|.++.+|. .+..+++|++|++++|. +..+|...+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 66665543 46666666667666665 55666555666666666666666543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=120.63 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=53.4
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccch-HHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 117 (620)
+.++++++.+..+|... .+++++|++++|.+ ..++. .++..+++|++|++++|.+..+ |..++++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34455555554444322 11444455544444 22222 2234444444444444444443 33444444444444444
Q ss_pred CCCCC--hhhhcCCCCCCEEecCCCCCCCC-ChhccCCCCCCEEeCCCCc
Q 007039 118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 118 ~~~~~--~~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 164 (620)
|.+.. +..|.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 44443 13344444444444444444422 3334444444444444443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-13 Score=121.47 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCcEEEEccCCCCcCCCCcCCCC-CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhh-hcccCCcEEE
Q 007039 37 KDPIAISLPHRDIQELPERLQCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLC 114 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~-~~l~~L~~L~ 114 (620)
.+++.|++++|.+..++....+. +|++|++++|.+ ..++ . +..+++|++|++++|.+..+|..+ +.+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34455555555544443333222 444444444444 2221 1 244444444444444444443222 4444444444
Q ss_pred ccCCCCCC-hh--hhcCCCCCCEEecCCCCCCCCChh----ccCCCCCCEEeCCCC
Q 007039 115 LDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNC 163 (620)
Q Consensus 115 L~~~~~~~-~~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~ 163 (620)
+++|.+.+ +. .+..+++|++|++++|.+..+|.. ++.+++|++|++++|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 44444443 22 344444444444444444444432 444444444444443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-13 Score=119.19 Aligned_cols=134 Identities=15% Similarity=0.063 Sum_probs=114.2
Q ss_pred CCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-h-hhhcCCC
Q 007039 53 PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLK 130 (620)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~ 130 (620)
+...++++|+.|++++|.+ ..++. +....++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3444788999999999988 45654 333445999999999999888 678999999999999999988 5 4459999
Q ss_pred CCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccchH---HHhCCcCCcEEEcCCCccc
Q 007039 131 KLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPN---VISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 131 ~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~---~l~~l~~L~~L~l~~~~~~ 191 (620)
+|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. .+..+++|+.|+++++...
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999999987 79999999999999998 6777764 5889999999999887654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=115.90 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=109.1
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh--hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEec
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS--SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL 137 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l 137 (620)
++++++++.. ..+|..+ ...+++|++++|.+..++. .++++++|++|++++|.+.. +..|.++++|++|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 7899999987 7788755 3499999999999998875 38999999999999999987 578999999999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|.++.++.. +..+++|++|++++|. +..+++..+..+++|++|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999977654 8899999999999998 66665555899999999999999886
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-13 Score=148.31 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=111.9
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEE
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL 135 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 135 (620)
.+++|++|++++|.+ ..+|..++ .+++|++|+|++|.+..+|..++++++|++|+|++|.+.. |..|++|++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 889999999999998 68888875 8999999999999999999999999999999999999988 8899999999999
Q ss_pred ecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcC-CcEEEcCCCccc
Q 007039 136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ-LEELYMGNGFSG 191 (620)
Q Consensus 136 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~-L~~L~l~~~~~~ 191 (620)
+|++|.+..+|..++++++|++|++++|. +...++..+..+.. +..+++.+|.+.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 99999999999999999999999999998 55444443544321 223556666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=111.36 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=68.0
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~ 118 (620)
+.++..++.+..+|.. -.++|++|++++|.+ ..++...+..+++|++|++++|.+..+|. .++++++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4555566655555532 234566666666655 34444444556666666666666655543 3455666666666666
Q ss_pred CCCC-h-hhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 119 ~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 6555 2 3345566666666666655555544 2445566666665555
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=112.43 Aligned_cols=123 Identities=20% Similarity=0.274 Sum_probs=108.5
Q ss_pred EEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCC
Q 007039 40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC 118 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~ 118 (620)
+.++++++.+..+|... .++|++|++++|.+ ..+|.. +..+++|++|++++|.+..++ ..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57889999998888654 46899999999998 678754 689999999999999999886 57999999999999999
Q ss_pred CCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccc
Q 007039 119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166 (620)
Q Consensus 119 ~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 166 (620)
.+.. +..|..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9987 46799999999999999999999875 788999999999998743
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=110.94 Aligned_cols=125 Identities=21% Similarity=0.291 Sum_probs=99.2
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
.+.+++.++.. ..+|..+ .++|++|++++|.+..+|. .++++++|++|++++|.+.. + ..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 46778887776 6667543 4788899999988887764 56788889999999888877 4 45788889999999
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 98888887765 5788889999998887 67787776678888888888888765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=130.22 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=116.6
Q ss_pred CCCCccEEE-cccCCCCCcccchHH-----Hh--cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhc
Q 007039 57 QCPNLQLFL-LYTEGNGPMQVSDHF-----FE--GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIG 127 (620)
Q Consensus 57 ~~~~Lr~L~-l~~~~~~~~~~~~~~-----~~--~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~ 127 (620)
.+++|+.|+ +..+.. ..++... +. ....|++|++++|.+..+|. ++++++|++|++++|.+.. |..++
T Consensus 407 ~l~~L~~L~~l~~n~~--~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~ 483 (567)
T 1dce_A 407 YFSTLKAVDPMRAAYL--DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA 483 (567)
T ss_dssp HHHHHHHHCGGGHHHH--HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred HHHhcccCcchhhccc--chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhh
Confidence 567888887 554432 2222100 01 12369999999999999997 9999999999999999988 88999
Q ss_pred CCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCcccccc--chHHHhCCcCCcEEEcCCCccccccccCCCCcchhh
Q 007039 128 QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI--APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVE 205 (620)
Q Consensus 128 ~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~--p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 205 (620)
.+++|++|++++|.++.+| .++++++|++|++++|. +..+ |.. ++++++|+.|++++|.+....+ ....-
T Consensus 484 ~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-----~~~~l 555 (567)
T 1dce_A 484 ALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG-----IQERL 555 (567)
T ss_dssp GCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS-----CTTHH
T ss_pred cCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc-----HHHHH
Confidence 9999999999999999998 89999999999999998 6777 555 8999999999999998863321 12223
Q ss_pred hcCCCCCCEEEe
Q 007039 206 LERLTELTTLEI 217 (620)
Q Consensus 206 l~~l~~L~~L~l 217 (620)
+..+++|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 445788888864
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-13 Score=124.71 Aligned_cols=106 Identities=23% Similarity=0.272 Sum_probs=52.6
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
..+++|++|++++|.+..+| .+.++++|++|++++|.+.. |..+..+++|++|++++|.++.+| .++.+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 44555555555555554444 45555555555555555444 344444455555555555555544 3445555555555
Q ss_pred CCCccccccch-HHHhCCcCCcEEEcCCCcc
Q 007039 161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 161 ~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~ 190 (620)
++|. +..++. ..+..+++|++|++.+|.+
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 5544 333332 2244555555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=130.40 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=146.2
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCC-----------CCcccchHHHhcCCCCcEEE-cCCCCCCCChh
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGN-----------GPMQVSDHFFEGMEGLKVLQ-FPGIGSSSLPS 102 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~-----------~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp~ 102 (620)
.+.+++|++++|.+..+|... ++++|+.|++.+|.. .....++..+..+++|+.|+ ++.+.+..++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 345666777777777777655 777888888765530 01223334457889999998 66665443332
Q ss_pred ------hhhc--ccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHH
Q 007039 103 ------SLGR--LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (620)
Q Consensus 103 ------~~~~--l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l 174 (620)
.+.. ...|++|++++|.+..++.++.+++|++|++++|.++.+|..++++++|++|++++|. +..+| . +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-c
Confidence 1221 1369999999999998334999999999999999999999999999999999999998 77788 3 9
Q ss_pred hCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-----cCceEEE
Q 007039 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-----VELQRYK 238 (620)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~L~~L~ 238 (620)
+++++|++|++++|.+... ..+..++++++|+.|++++|.....++.... ++|+.|+
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~-------~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQS-------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTCSSCCEEECCSSCCCSS-------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcEEECCCCCCCCC-------CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9999999999999988621 1157899999999999999998877765422 6777764
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-13 Score=124.01 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=118.2
Q ss_pred cEEEEccCC--CCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 39 PIAISLPHR--DIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 39 lr~L~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
++...+.+. .++.++... ++++|++|++++|.+ ..+| . +..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 455555544 445555444 899999999999987 5577 3 58899999999999999999998888999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccc---------hHHHhCCcCCcEEE
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIA---------PNVISKLSQLEELY 184 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p---------~~~l~~l~~L~~L~ 184 (620)
++|.+..++.+..+++|++|++++|.+..+|. .+..+++|++|++++|......| ...+..+++|+.|+
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999995578999999999999999998765 78999999999999997433322 23477888999886
Q ss_pred cCCCccc
Q 007039 185 MGNGFSG 191 (620)
Q Consensus 185 l~~~~~~ 191 (620)
++.+.
T Consensus 181 --~~~i~ 185 (198)
T 1ds9_A 181 --GMPVD 185 (198)
T ss_dssp --CGGGT
T ss_pred --CcccC
Confidence 44443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-11 Score=105.64 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=47.6
Q ss_pred cEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 88 r~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
++++++++.+..+|..+. .+|++|++++|.+.. +..|+++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344444444444444332 444555555554443 23444555555555555555544443 2445555555555544
Q ss_pred cccccchHHHhCCcCCcEEEcCCCcc
Q 007039 165 WLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 165 ~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
+..+|...+.++++|++|++++|.+
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -cceeCHHHhccccCCCEEEeCCCCc
Confidence 4444443344455555555554443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.18 E-value=8.9e-11 Score=104.70 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=49.6
Q ss_pred cEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 88 r~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
++++++++.+..+|..+. .+|++|++++|.+.. +..|.++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555544332 445555555555444 23455555555555555555555443 2455555555555554
Q ss_pred cccccchHHHhCCcCCcEEEcCCCcc
Q 007039 165 WLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 165 ~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
+..++...+.++++|++|++++|.+
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 -LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 4444444345555555555555544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-10 Score=99.90 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=73.0
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEecC
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA 138 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~ 138 (620)
+.++++++.. ..+|..+ .++|++|++++|.+..+ |..++++++|++|+|++|.+.. + ..|.++++|++|+++
T Consensus 15 ~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 5666766665 5666543 36777777777777766 4567777778888887777776 4 345778888888888
Q ss_pred CCCCCCCChh-ccCCCCCCEEeCCCCccccccc
Q 007039 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 139 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p 170 (620)
+|.++.+|.. +..+++|++|++++|. +...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 8888777765 7778888888888876 44443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=116.14 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCC-EEEeecCCCCCCCCccc
Q 007039 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT-TLEIEVPDAEILPPDFV 230 (620)
Q Consensus 152 l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~ 230 (620)
+++|+.+++.+|. +..+|..+|.++.+|+.+++..+ +. ......+.++++|+ .+.+.. ....++...+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~--------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LK--------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cc--------eehHHHhhCChhccEEEEEcc-cceEEchhhh
Confidence 4555555555544 45555555555555555555544 21 01123445555555 555544 4444444433
Q ss_pred c--cCceEEEE
Q 007039 231 S--VELQRYKI 239 (620)
Q Consensus 231 ~--~~L~~L~l 239 (620)
. .+|+.+.+
T Consensus 294 ~~c~~L~~l~l 304 (329)
T 3sb4_A 294 MGCDNLRYVLA 304 (329)
T ss_dssp TTCTTEEEEEE
T ss_pred hCCccCCEEEe
Confidence 3 45555554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=97.38 Aligned_cols=99 Identities=22% Similarity=0.172 Sum_probs=73.2
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCEEec
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL 137 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~L~l 137 (620)
.++++++++.. ..+|..+ .+.|++|++++|.+..+ |..|+++++|++|++++|.+.. + ..|.++++|++|++
T Consensus 11 ~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 45667777665 5566543 36777888888887776 4567778888888888888776 3 45678888888888
Q ss_pred CCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 138 AYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 138 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
++|.++.+|.. +.++++|++|++++|.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88888877764 7778888888888876
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=107.71 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCc-EEEcCC
Q 007039 129 LKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE-ELYMGN 187 (620)
Q Consensus 129 L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~-~L~l~~ 187 (620)
+.+|+.+++++|.++.+|.. +.++++|+.+++.++ +..++..+|.++.+|+ .+.+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 34444444444444444432 444445555554443 4444444444444454 444443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.6e-10 Score=111.37 Aligned_cols=158 Identities=16% Similarity=0.112 Sum_probs=87.4
Q ss_pred CCccEEEcccCCCCCcccchHHHh-----cCCCCcEEEcCCCCCCC--ChhhhhcccCCcEEEccCCCCCC--hhhh---
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFE-----GMEGLKVLQFPGIGSSS--LPSSLGRLINLQTLCLDWCELAD--IAAI--- 126 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~-----~l~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~--~~~i--- 126 (620)
++|++|++++|.+ .......+. ..++|++|++++|.+.. +......+.+|++|+|++|.+.+ ...+
T Consensus 72 ~~L~~L~Ls~n~l--~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRM--TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCC--CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCC--CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4566777776665 221111111 22567777777776643 22222345567777777777664 2332
Q ss_pred --cCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCccccccc----hHHHhCCcCCcEEEcCCCccccccc
Q 007039 127 --GQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLEVIA----PNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 127 --~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p----~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
....+|++|++++|.++. ++..+..+++|++|++++|. ++... ...+...++|++|++++|.+.....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 235667777777776652 44455666777777777776 44322 1224556677777777776641110
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
......+...+.|++|++++|.+.
T Consensus 229 ----~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 ----LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ----HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ----HHHHHHHHhCCCCCEEeccCCCCC
Confidence 122334455667777777776643
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.1e-10 Score=111.19 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=117.5
Q ss_pred cccCCcEEEEccCCCCcCC-----CCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-----h
Q 007039 34 TIQKDPIAISLPHRDIQEL-----PERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-----P 101 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l-----~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-----p 101 (620)
...+.++.|++++|.+... .... ..++|++|++++|.+ ...-...+...+++|++|++++|.+... .
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 4478899999999998532 2221 347999999999987 3333334445678999999999998642 2
Q ss_pred hhh-hcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCcccccc
Q 007039 102 SSL-GRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLEVI 169 (620)
Q Consensus 102 ~~~-~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~ 169 (620)
..+ ....+|++|+|++|.+.+ . ..+...++|++|++++|.+.. ++..+...++|++|++++|. ++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence 333 246789999999999875 2 445789999999999998873 45667888999999999997 5543
Q ss_pred chH----HHhCCcCCcEEEcCCCccc
Q 007039 170 APN----VISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 170 p~~----~l~~l~~L~~L~l~~~~~~ 191 (620)
... .+...++|++|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 322 2456789999999999876
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=102.37 Aligned_cols=97 Identities=22% Similarity=0.128 Sum_probs=51.5
Q ss_pred EEcccC-CCCCcccchHHHhcCCCCcEEEcCC-CCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 64 FLLYTE-GNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 64 L~l~~~-~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
++++++ .. ..+|. +..+++|++|+|++ |.+..+| ..|+++.+|++|+|++|.+.. +..|.+|++|++|+|+
T Consensus 13 v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 355544 33 44554 35555566666654 5555544 345555556666666555554 2445555555566655
Q ss_pred CCCCCCCChhccCCCCCCEEeCCCCc
Q 007039 139 YSNINQLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 139 ~~~l~~lp~~i~~l~~L~~L~l~~~~ 164 (620)
+|.++.+|..+....+|+.|++.+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCccceeCHHHcccCCceEEEeeCCC
Confidence 55555555443333335555555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-08 Score=98.41 Aligned_cols=100 Identities=24% Similarity=0.188 Sum_probs=75.2
Q ss_pred EEEcCCC-CCCCChhhhhcccCCcEEEccC-CCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCC
Q 007039 89 VLQFPGI-GSSSLPSSLGRLINLQTLCLDW-CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNC 163 (620)
Q Consensus 89 ~L~l~~~-~~~~lp~~~~~l~~L~~L~L~~-~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 163 (620)
.++++++ .+..+|. ++.+.+|++|+|++ |.+.. + ..|+.|.+|++|+|++|.++.+|. .+.++++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577776 7777888 88888888888885 77776 3 667888888888888888876654 4678888888888887
Q ss_pred ccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 164 WWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 164 ~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
. +..+|...+..+. |+.|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7 6777776555555 888888877765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.1e-07 Score=91.62 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=29.0
Q ss_pred cchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecC
Q 007039 76 VSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138 (620)
Q Consensus 76 ~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~ 138 (620)
+....|.++.+|+.+.+..+ ++.++ .+|.+|.+|+.+++..+ +.. ...|..+.+|+.+.+.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 44444555555555555432 34432 34555555555555432 222 2344555555554443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9.6e-07 Score=89.90 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=145.3
Q ss_pred CCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
.+++.+.+..+ +..++... .-.+|+.+.+.. . ...+....|.++++|+.+++..+.+..++...-.+.+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-T--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-T--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-C--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 35666666554 54444433 224799999875 3 3667777789999999999999998888764444689999999
Q ss_pred cCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 116 DWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 116 ~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
..+ +.. ...|.++.+|+.+++..+ ++.++...-.-.+|+.+.+.+. +..++..+|.++++|+.+.+.++.....
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 854 555 478889999999999874 6666554323378888888553 6778877788999999998877654310
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
.. .......+.++++|+.+.+. +....++...+. .+|+.+.+... .. .-....+..+ +|+.+.+.+.
T Consensus 287 ~~---~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 287 PE---AMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TT---CEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCS
T ss_pred cc---cEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCC
Confidence 00 01223567788888888887 446666666555 78888877322 11 1011124556 8888888873
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=89.26 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=144.1
Q ss_pred CCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEE
Q 007039 37 KDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTL 113 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L 113 (620)
.+++.+.+.. .+..++... +|++|+.+++..+.. ..++...|. +..|+.+.+..+ +..++ ..|.+|.+|+.+
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 4577777765 555555433 899999999998876 778877776 689999999854 66664 578889999999
Q ss_pred EccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeCCCCcc----ccccchHHHhCCcCCcEEEcC
Q 007039 114 CLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWW----LEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 114 ~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~----~~~~p~~~l~~l~~L~~L~l~ 186 (620)
++..+ +.. ...|.+ .+|+.+.+.. .++.++ ..+.++++|+.+++.++.. ...++..+|.++.+|+.+.+.
T Consensus 232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 99874 444 355666 7888888843 566664 4577888999998877641 125777778889999999887
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEe
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (620)
.+ +. ......+.++++|+.+.+..+ ...++...+. .+|+.+.+.....+........+....++.+.+.
T Consensus 309 ~~-i~--------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 309 ES-IR--------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TT-CC--------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred Cc-eE--------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 43 22 122356778888888888543 5556655555 6888888865543332222112222456777766
Q ss_pred c
Q 007039 266 G 266 (620)
Q Consensus 266 ~ 266 (620)
.
T Consensus 379 ~ 379 (401)
T 4fdw_A 379 A 379 (401)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-07 Score=83.60 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=20.0
Q ss_pred CccEEEEecCCCcceecchhhhcccCcccEEEEcccccccc
Q 007039 469 NLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG 509 (620)
Q Consensus 469 ~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 509 (620)
.|+.|++++|. +++... ..+..+++|++|++++|..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCH
Confidence 45566666654 444421 2234555555555555555543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7e-08 Score=84.60 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=44.1
Q ss_pred cccCccceEecCCccccccccccCCccc-cccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccc
Q 007039 437 VTFPRLEELELVSLTNIKKLWSDQFQGI-YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG 509 (620)
Q Consensus 437 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 509 (620)
..+++|++|+|++|..++.-....+... ..+++|++|+|++|+++++... ..+..+++|++|+|++|+.+++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 4577778888888776654321111100 0134677888888877777643 3345677777777777777765
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.1e-07 Score=90.93 Aligned_cols=181 Identities=17% Similarity=0.149 Sum_probs=112.6
Q ss_pred cCCcEEEEccCCCCcC---------CCCcC-CCCCccEEEcccCCCCC-------cccchHHHhcCCCCcEEEcCCCCCC
Q 007039 36 QKDPIAISLPHRDIQE---------LPERL-QCPNLQLFLLYTEGNGP-------MQVSDHFFEGMEGLKVLQFPGIGSS 98 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~---------l~~~~-~~~~Lr~L~l~~~~~~~-------~~~~~~~~~~l~~Lr~L~l~~~~~~ 98 (620)
..+++.|.+....... +.... ++++|+.|.+.+..... ..-...++..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4567888887554321 11112 67899999886543210 0112345578899999999887423
Q ss_pred CChhhhhcccCCcEEEccCCCCCC--hhhhc--CCCCCCEEecCCC--C------CCCCChhc--cCCCCCCEEeCCCCc
Q 007039 99 SLPSSLGRLINLQTLCLDWCELAD--IAAIG--QLKKLEILSLAYS--N------INQLPVEI--GQLTRLQLLDLSNCW 164 (620)
Q Consensus 99 ~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~--~L~~L~~L~l~~~--~------l~~lp~~i--~~l~~L~~L~l~~~~ 164 (620)
.++. + .+++|++|++..|.+.. ...+. .+++|++|+|+.+ . +..+...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 4444 3 37889999999888765 45554 7899999998532 1 22222222 357899999998887
Q ss_pred cccccchHHH--hCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 165 WLEVIAPNVI--SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 165 ~~~~~p~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
.....+..+. ..+++|++|+++.|.+..... .+....+.++++|+.|+++.|..
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcC
Confidence 4333333212 257899999998877651100 12233446778899999987753
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.4e-06 Score=84.56 Aligned_cols=302 Identities=13% Similarity=0.107 Sum_probs=158.3
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
+|.+|+.+.+..+ . ..+....|.++..|+.+++..+ ++.++ ..|.++..|+.+.+..+ +.. ...|.....+.
T Consensus 69 ~c~~L~~i~lp~~-i--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 69 GCRKVTEIKIPST-V--REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TCTTEEEEECCTT-C--CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred CCCCceEEEeCCC-c--cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 7889999999643 3 6677777899999999999755 45554 46778888888766543 222 34455544433
Q ss_pred EEecCCCCCCCC-ChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCC
Q 007039 134 ILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212 (620)
Q Consensus 134 ~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 212 (620)
...... +..+ ...+.++++|+.+.+.+. +..++..++..+.+|+.+.+..+... .....+.++..|
T Consensus 144 ~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~---------I~~~~F~~~~~L 210 (394)
T 4fs7_A 144 ITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI---------IRDYCFAECILL 210 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE---------ECTTTTTTCTTC
T ss_pred cccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE---------eCchhhcccccc
Confidence 332222 2222 234667788888887654 45666666777888887777654211 112344555556
Q ss_pred CEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceec
Q 007039 213 TTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL 291 (620)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l 291 (620)
+.+.+..+. ..+...... ..|+.+.+.... ..-....+.....++.+.+... ...+. ......+..++.+..
T Consensus 211 ~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~--~~~i~--~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 211 ENMEFPNSL-YYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNN--KLRIG--GSLFYNCSGLKKVIY 283 (394)
T ss_dssp CBCCCCTTC-CEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCT--TCEEC--SCTTTTCTTCCEEEE
T ss_pred ceeecCCCc-eEeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCC--cceee--ccccccccccceecc
Confidence 555443322 111222222 556666552111 0000011334455555555431 11111 111011223333332
Q ss_pred ccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCc
Q 007039 292 ETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR 371 (620)
Q Consensus 292 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 371 (620)
.... . ... .+..+.+|+.+.+.+. ++.+.. . ....+.+|+.+.+.. +++.+.... ...+.+|+
T Consensus 284 ~~~~---i--~~~-~F~~~~~L~~i~l~~~--i~~I~~-~---aF~~c~~L~~i~lp~--~v~~I~~~a---F~~c~~L~ 346 (394)
T 4fs7_A 284 GSVI---V--PEK-TFYGCSSLTEVKLLDS--VKFIGE-E---AFESCTSLVSIDLPY--LVEEIGKRS---FRGCTSLS 346 (394)
T ss_dssp CSSE---E--CTT-TTTTCTTCCEEEECTT--CCEECT-T---TTTTCTTCCEECCCT--TCCEECTTT---TTTCTTCC
T ss_pred Ccee---e--ccc-cccccccccccccccc--cceech-h---hhcCCCCCCEEEeCC--cccEEhHHh---ccCCCCCC
Confidence 2111 1 111 1346778888877542 444421 1 233456677777643 344443332 45677788
Q ss_pred EEEeecCCCceeecchhHHHHhcccceEEEEe
Q 007039 372 IINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (620)
Q Consensus 372 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (620)
.+.+.. +++.+.. ..+.++++|+++.+..
T Consensus 347 ~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 347 NINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred EEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 887753 3666543 3456788888887753
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-06 Score=75.60 Aligned_cols=109 Identities=14% Similarity=0.044 Sum_probs=56.5
Q ss_pred HhcCCCCcEEEcCCC-CCCC-----ChhhhhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCC----
Q 007039 81 FEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ---- 144 (620)
Q Consensus 81 ~~~l~~Lr~L~l~~~-~~~~-----lp~~~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~---- 144 (620)
+...+.|++|++++| .+.. +...+....+|++|+|++|.+.+ . ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345556666666665 5432 33444455566666666666553 1 233344566666666665552
Q ss_pred -CChhccCCCCCCEEeC--CCCccccccch----HHHhCCcCCcEEEcCCCcc
Q 007039 145 -LPVEIGQLTRLQLLDL--SNCWWLEVIAP----NVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 145 -lp~~i~~l~~L~~L~l--~~~~~~~~~p~----~~l~~l~~L~~L~l~~~~~ 190 (620)
+...+...++|++|++ ++|. ++.... .++...+.|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444555566666666 4454 332111 1133445666666665554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.10 E-value=3e-06 Score=84.65 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=111.8
Q ss_pred cccCCcEEEEccCCCCc----------CCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-Ch
Q 007039 34 TIQKDPIAISLPHRDIQ----------ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LP 101 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~----------~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp 101 (620)
..+++++.|.+...... .+.... .+|+|+.|.+.++.. ..++. + .+++|+.|++..+.+.. ..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~--~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK--K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS--C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc--c-cCCCCcEEEEecCCCChHHH
Confidence 34679999999765331 122222 789999999998743 33444 2 38899999999887642 12
Q ss_pred hhhh--cccCCcEEEccCC--C------CCCh-hhh--cCCCCCCEEecCCCCCCC-CChhc---cCCCCCCEEeCCCCc
Q 007039 102 SSLG--RLINLQTLCLDWC--E------LADI-AAI--GQLKKLEILSLAYSNINQ-LPVEI---GQLTRLQLLDLSNCW 164 (620)
Q Consensus 102 ~~~~--~l~~L~~L~L~~~--~------~~~~-~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~l~~~~ 164 (620)
..+. .+++|++|+|+.+ . +... ..+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 2333 7899999998642 1 1111 122 358899999999987762 22222 358899999999987
Q ss_pred ccccc-----chHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcC-CCCCCEEEeecCC
Q 007039 165 WLEVI-----APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPD 221 (620)
Q Consensus 165 ~~~~~-----p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 221 (620)
++.. +.. +..+++|+.|+++.|.+. +.....+.. + ...++++.+.
T Consensus 291 -L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~--------d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 -LTDEGARLLLDH-VDKIKHLKFINMKYNYLS--------DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp -CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC--------HHHHHHHHHHC--CSEEECCSBC
T ss_pred -CChHHHHHHHhh-cccCCcceEEECCCCcCC--------HHHHHHHHHHc--CCEEEecCCc
Confidence 4442 222 356799999999998765 233444544 3 3456776654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00023 Score=72.29 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=69.1
Q ss_pred cccchHHHhcCC-CCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCC---CCC--hhhhcCCCCCCEEecCCCCCCCCC
Q 007039 74 MQVSDHFFEGME-GLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE---LAD--IAAIGQLKKLEILSLAYSNINQLP 146 (620)
Q Consensus 74 ~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~---~~~--~~~i~~L~~L~~L~l~~~~l~~lp 146 (620)
..+....|.+++ .|+.+.+..+ ++.+. .+|.+|.+|+.+.+..+. +.. ...|....+|+.+.+..+ ++.++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 345556667774 5888888754 45553 567888888888887653 443 256666777776665443 44443
Q ss_pred h-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCC
Q 007039 147 V-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (620)
Q Consensus 147 ~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~ 188 (620)
. .+..+.+|+.+.+... +..++..++..+.+|+.+.+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 3 3566677777777543 45555555667777777766543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=6.6e-06 Score=73.91 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=81.4
Q ss_pred CCCCccEEEcccC-CCCCcc--cchHHHhcCCCCcEEEcCCCCCCC-----ChhhhhcccCCcEEEccCCCCCC------
Q 007039 57 QCPNLQLFLLYTE-GNGPMQ--VSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD------ 122 (620)
Q Consensus 57 ~~~~Lr~L~l~~~-~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~------ 122 (620)
..+.|++|++++| .+.... .....+...+.|++|++++|.+.. +...+...+.|++|+|++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 6788999999888 661111 112234567889999999999863 55667777889999999999875
Q ss_pred hhhhcCCCCCCEEec--CCCCCCC-----CChhccCCCCCCEEeCCCCc
Q 007039 123 IAAIGQLKKLEILSL--AYSNINQ-----LPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 123 ~~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 164 (620)
...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 256677889999999 8888873 55566777899999999986
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0004 Score=70.59 Aligned_cols=146 Identities=9% Similarity=0.110 Sum_probs=99.6
Q ss_pred CCC-CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCC---CCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCC
Q 007039 57 QCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG---SSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQL 129 (620)
Q Consensus 57 ~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L 129 (620)
+++ .|+.+.+-.. ...+....|.++..|+.+.+..+. ++.+. .+|.+|.+|+.+.+..+ +.. ...|..+
T Consensus 61 ~~~~~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TCCSCCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred CCCCcCEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 453 5888888643 366777778999999999998654 45554 57888889988877654 333 3678889
Q ss_pred CCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcC
Q 007039 130 KKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER 208 (620)
Q Consensus 130 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 208 (620)
.+|+.+.+... +..++. .+..+.+|+.+.+... +..+...++.. .+|+.+.+...... .....+.+
T Consensus 137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~---------i~~~af~~ 203 (394)
T 4gt6_A 137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR---------IGTNAFSE 203 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE---------ECTTTTTT
T ss_pred cccccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc---------cccchhhh
Confidence 99999999754 444433 4678899999998764 56777665654 57888887654322 12234555
Q ss_pred CCCCCEEEeec
Q 007039 209 LTELTTLEIEV 219 (620)
Q Consensus 209 l~~L~~L~l~~ 219 (620)
+..+.......
T Consensus 204 c~~l~~~~~~~ 214 (394)
T 4gt6_A 204 CFALSTITSDS 214 (394)
T ss_dssp CTTCCEEEECC
T ss_pred ccccceecccc
Confidence 66666655443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=74.67 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=61.1
Q ss_pred hcCCCCcE--EEcCCCCCCCChh----hhhcccCCcEEEccCCCCCCh----hhhcCCCCCCEEecCCCCCCCCChhccC
Q 007039 82 EGMEGLKV--LQFPGIGSSSLPS----SLGRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQ 151 (620)
Q Consensus 82 ~~l~~Lr~--L~l~~~~~~~lp~----~~~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~~i~~ 151 (620)
...+.|+. ++++.|....++. ...++++|++|+|++|.+..+ ..++.+++|++|+|++|.+..+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence 33444444 4555554333322 224567777777777776652 3445777777777777777765 23444
Q ss_pred CC--CCCEEeCCCCccccccc------hHHHhCCcCCcEEE
Q 007039 152 LT--RLQLLDLSNCWWLEVIA------PNVISKLSQLEELY 184 (620)
Q Consensus 152 l~--~L~~L~l~~~~~~~~~p------~~~l~~l~~L~~L~ 184 (620)
+. +|++|++++|.....+| ..++..+++|+.|+
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44 77788887777444343 23367788888776
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.78 E-value=9.1e-06 Score=76.87 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=38.6
Q ss_pred cCCCCCCEEecCCCCCCCCC---hhccCCCCCCEEeCCCCccccccchHHHhCCc--CCcEEEcCCCccc
Q 007039 127 GQLKKLEILSLAYSNINQLP---VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS--QLEELYMGNGFSG 191 (620)
Q Consensus 127 ~~L~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~--~L~~L~l~~~~~~ 191 (620)
.++++|++|+|++|.++.++ ..+..+++|++|++++|. +..+.. +..+. +|++|++.+|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcCc
Confidence 35667777777777666543 445567777777777766 444422 34443 6777777777665
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.023 Score=56.99 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=73.6
Q ss_pred HHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCC
Q 007039 80 FFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRL 155 (620)
Q Consensus 80 ~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L 155 (620)
.+..+..|+.+.+..+- ..+ ...+.++.+|+.+.+..+ +.. ...+....+|+.+.+..+ +..++. .+..+++|
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 34566677777665442 222 335566677777777554 333 355666677777776543 444443 35667777
Q ss_pred CEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEee
Q 007039 156 QLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIE 218 (620)
Q Consensus 156 ~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 218 (620)
+.+.+.++. ++.++..+|.++.+|+.+.+..+ +. ......+.++++|+++.+.
T Consensus 289 ~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~--------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK--------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCCCCCC
T ss_pred ccccccccc-cceehhhhhcCCCCCCEEEcCcc-cc--------EEHHHHhhCCCCCCEEEEC
Confidence 777776654 56666666777777777777543 11 1122456666667666653
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.064 Score=53.75 Aligned_cols=144 Identities=11% Similarity=0.084 Sum_probs=92.9
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEe
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLD 159 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 159 (620)
....+..+.+...........+..+.+|+.+.+..+ +.. ...+....+|+.+.+..+ ++.+.. .+.++.+|+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 344555555554433233445667788888887654 332 466778888888888664 555543 466788888888
Q ss_pred CCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEE
Q 007039 160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRY 237 (620)
Q Consensus 160 l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L 237 (620)
+... +..++..++..+.+|+.+.+.++.+.. .....+.++.+|+.+.+.. ....++...+. .+|+.+
T Consensus 270 l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~--------I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 270 FYAK--VKTVPYLLCSGCSNLTKVVMDNSAIET--------LEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp ECCC--CSEECTTTTTTCTTCCEEEECCTTCCE--------ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCC
T ss_pred cccc--ceeccccccccccccccccccccccce--------ehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEE
Confidence 8653 667777778888899988887665431 1225677888888888753 34555555444 567766
Q ss_pred EE
Q 007039 238 KI 239 (620)
Q Consensus 238 ~l 239 (620)
.+
T Consensus 339 ~i 340 (379)
T 4h09_A 339 SY 340 (379)
T ss_dssp CC
T ss_pred EE
Confidence 55
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.035 Score=45.87 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=34.7
Q ss_pred EEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 134 ILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 134 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++.++.+++ .+|..+. .+|++|++++|. +..+|.+.|..+++|+.|++.+|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5556666666 6665432 356777777766 66666666666777777777666543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.042 Score=45.42 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=14.9
Q ss_pred CCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCC
Q 007039 86 GLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCE 119 (620)
Q Consensus 86 ~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 119 (620)
.|++|+|++|.+..+|. .|..+.+|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34444444444444432 23344444444444443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.1 Score=46.28 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=40.9
Q ss_pred cCCCCcEEEcCCC-CCCC-----ChhhhhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCC-----CC
Q 007039 83 GMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QL 145 (620)
Q Consensus 83 ~l~~Lr~L~l~~~-~~~~-----lp~~~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~l 145 (620)
.-+.|+.|+|+++ .+.. +.+.+..-..|+.|+|++|.+.+ - ..+..=+.|++|+|++|.|. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666553 4431 33444444556666666666553 1 23333455666666666554 22
Q ss_pred ChhccCCCCCCEEeCCCC
Q 007039 146 PVEIGQLTRLQLLDLSNC 163 (620)
Q Consensus 146 p~~i~~l~~L~~L~l~~~ 163 (620)
-..+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 333444455666666543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.077 Score=47.14 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=67.8
Q ss_pred hhhcccCCcEEEccCC-CCCC--h----hhhcCCCCCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCccccccc
Q 007039 103 SLGRLINLQTLCLDWC-ELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 103 ~~~~l~~L~~L~L~~~-~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p 170 (620)
.+.+-..|+.|+|+++ .+.+ . +.+..=+.|+.|+|++|.+. .+...+..-+.|++|++++|. ++...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHH
Confidence 3344567888999885 6764 1 55666678888888888776 344445556778888888876 44332
Q ss_pred hHH----HhCCcCCcEEEcCCCcc-ccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 171 PNV----ISKLSQLEELYMGNGFS-GWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 171 ~~~----l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
... +..-+.|++|+++++.. ..... ...+....+..-+.|+.|+++++.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~--g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQ--VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHH--HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHH--HHHHHHHHHHhCCCcCeEeccCCC
Confidence 221 33335688888765422 10000 001233445555667777776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 620 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-08 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.001 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.001 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.002 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 54.2 bits (129), Expect = 2e-08
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 6/121 (4%)
Query: 42 ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
+ L I + L E N ++ L L S +
Sbjct: 268 LKLGANQISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323
Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
+ L LQ L +++D++++ L + LS ++ I+ L + LTR+ L L+
Sbjct: 324 P-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 381
Query: 162 N 162
+
Sbjct: 382 D 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 52.7 bits (125), Expect = 6e-08
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
L NL L L + ++DI+ + L KL+ L A + ++ + + LT + L +
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364
Query: 167 EVIAPNVISKLSQLEELYMGN 187
++ ++ L+++ +L + +
Sbjct: 365 DLTP---LANLTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 8e-05
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
S L + TL D + I + L L ++ + + + + + LT+L + +
Sbjct: 37 TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 95
Query: 161 SNCWW 165
+N
Sbjct: 96 NNNQI 100
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 0.001
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
L L + D + L ++ L I + + L L ++ SN L
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QL 78
Query: 167 EVIAPNVISKLSQLEELYMGNGFSGW 192
I P + L++L ++ M N
Sbjct: 79 TDITP--LKNLTKLVDILMNNNQIAD 102
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 98 SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
L + + + LD L + +L+ S L + + L
Sbjct: 10 EQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69
Query: 158 LDLSNCW-WLEVIAPNVISKLSQLEELYM 185
L+LSN + +++ K L+ L +
Sbjct: 70 LNLSNNRLYRLDDMSSIVQKAPNLKILNL 98
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 79 HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA 138
+ L+ L LP+ L+ L + LA++ + + L+ L +
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL--PQNLKQLHVE 332
Query: 139 YSNINQLPVEIGQLTRLQL 157
Y+ + + P + L++
Sbjct: 333 YNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.002
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
+L+ L + +L ++ A+ +LE L +++++ ++P L + L +
Sbjct: 283 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQNLKQ---LHVEYNPLR 337
Query: 167 EVIAPNVISKLSQL 180
E P++ + L
Sbjct: 338 EF--PDIPESVEDL 349
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
L L TL L+ +++DI + L KL+ L L+ ++I+ L + L L +L+L +
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 111 QTLCLDWCELADIAAIGQL--KKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
QTL L L G+L + + S ++Q E R+Q +DLSN
Sbjct: 3 QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212
++S+ S+L+ L + ++ +L + L L
Sbjct: 62 TLHGILSQCSKLQNLSL-----EGLRLSDPIVNTLAKNSNLVRL 100
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 3e-04
Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 108 INLQTLCLDWCELADIAA---IGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLD 159
+++Q+L + EL+D + L++ +++ L + + + L L+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 160 LSNC----WWLEVIAPNVISKLSQLEELYMGNGFSGW 192
L + + + + + ++++L + N
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 90 LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI------AAIGQLKKLEILSLAYSNIN 143
+Q + + L L Q + LD C L + +A+ L L+L + +
Sbjct: 9 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68
Query: 144 QLPVEI------GQLTRLQLLDLSNCWW 165
+ V ++Q L L NC
Sbjct: 69 DVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
E + + L +LP +L L L+ L L ++ + L +L+ L L +
Sbjct: 16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75
Query: 141 NINQLPV--EIGQLTRLQLLDLSN--CWWLEVIAPNVISKLSQLEEL 183
+ Q + RL LL+L E I + L + +
Sbjct: 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 39.0 bits (89), Expect = 0.001
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
+ QLK L L+++++N+ + G L R + +N L
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 38.6 bits (88), Expect = 0.002
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 97 SSSLPSSLGRLINLQTLCLDWCEL-ADIAAIGQLKKLEILSLAYSN 141
+LP L +L L +L + + L +I G L++ ++ + A +
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 37.7 bits (86), Expect = 0.002
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 91 QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEIL 135
P I + ++L L + L L + I+++ ++ L IL
Sbjct: 33 MIPPI--EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRIL 75
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWW 165
L N + + D L + LS + + + + L L L+L +
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 79 HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSL 137
+ L L+ S + L L NL + L +++D++ + L I++L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 620 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.84 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.82 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.72 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.72 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.7 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.65 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.65 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.63 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.62 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.61 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.57 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.55 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.5 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.5 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.44 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.41 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.41 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.33 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.32 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.3 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.26 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.21 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.15 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.12 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.92 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.89 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.86 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.7 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.54 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.73 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.71 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.23 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.01 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.56 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.39 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.84 E-value=2.4e-19 Score=181.68 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=44.0
Q ss_pred cccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEc
Q 007039 106 RLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (620)
Q Consensus 106 ~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 185 (620)
.+.+|++|+++++.+++++.++.|++|++|++++|.++.+| .++++++|++|++++|+ +..+++ ++++++|+.|++
T Consensus 42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~-i~~i~~--l~~l~~L~~L~~ 117 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTL 117 (384)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCc-cccCCcccccccccccc-cccccc--cccccccccccc
Confidence 34455555555555555444555555555555555555554 25555555555555555 444443 555555555555
Q ss_pred CCCcc
Q 007039 186 GNGFS 190 (620)
Q Consensus 186 ~~~~~ 190 (620)
.++..
T Consensus 118 ~~~~~ 122 (384)
T d2omza2 118 FNNQI 122 (384)
T ss_dssp CSSCC
T ss_pred ccccc
Confidence 55444
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.82 E-value=4.6e-19 Score=179.54 Aligned_cols=319 Identities=17% Similarity=0.156 Sum_probs=191.3
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..++++|+++++.+..++....+++|++|++++|.+ .+++. ++++++|++|++++|.+..+++ ++++++|++|++
T Consensus 43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l--~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~ 117 (384)
T d2omza2 43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 117 (384)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcC--CCCcc--ccCCcccccccccccccccccc-cccccccccccc
Confidence 567999999999998886555899999999999987 66665 6889999999999999988875 889999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCC--------------------hhccCCCCCCEEeCCCCccccccchHHHh
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLP--------------------VEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--------------------~~i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
.++.+.+.........+.......+.+..+. ..+.............+. ... ... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~ 194 (384)
T d2omza2 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSD-ISV-LA 194 (384)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCC-CGG-GG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc-ccc-ccc-cc
Confidence 9888777434445555555554443322111 111222222233332222 111 111 44
Q ss_pred CCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCcccc
Q 007039 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLV 254 (620)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 254 (620)
.+++++.+.+.++.+. .+...+..++|++|+++++....++. +.. ++++.+.+..+... ..+.+.
T Consensus 195 ~l~~~~~l~l~~n~i~----------~~~~~~~~~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~---~~~~~~ 260 (384)
T d2omza2 195 KLTNLESLIATNNQIS----------DITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS---NLAPLS 260 (384)
T ss_dssp GCTTCSEEECCSSCCC----------CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCC---CCGGGT
T ss_pred cccccceeeccCCccC----------CCCcccccCCCCEEECCCCCCCCcch-hhcccccchhccccCccC---CCCccc
Confidence 5555555555555443 11223444555555555555444332 122 55555555433221 122345
Q ss_pred ccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeeccccc
Q 007039 255 KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRV 334 (620)
Q Consensus 255 ~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 334 (620)
..++|+.++++++ .+...... ..++.++.+.+..+... . +..+..+++++.|+++++. ++.+.
T Consensus 261 ~~~~L~~L~l~~~----~l~~~~~~-~~~~~l~~l~~~~n~l~-~----~~~~~~~~~l~~L~ls~n~-l~~l~------ 323 (384)
T d2omza2 261 GLTKLTELKLGAN----QISNISPL-AGLTALTNLELNENQLE-D----ISPISNLKNLTYLTLYFNN-ISDIS------ 323 (384)
T ss_dssp TCTTCSEEECCSS----CCCCCGGG-TTCTTCSEEECCSSCCS-C----CGGGGGCTTCSEEECCSSC-CSCCG------
T ss_pred ccccCCEeeccCc----ccCCCCcc-ccccccccccccccccc-c----ccccchhcccCeEECCCCC-CCCCc------
Confidence 5566666666552 11111111 11344555555443221 1 2224467888899988773 33332
Q ss_pred ccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEe
Q 007039 335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (620)
Q Consensus 335 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (620)
....+|+|++|+++++ ++++++. .+.+++|++|++.++ .++.+++ +.++++|+.|+|++
T Consensus 324 ~l~~l~~L~~L~L~~n-~l~~l~~-----l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~ 382 (384)
T d2omza2 324 PVSSLTKLQRLFFANN-KVSDVSS-----LANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLND 382 (384)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCC
T ss_pred ccccCCCCCEEECCCC-CCCCChh-----HcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCC
Confidence 4567889999999887 4665542 456899999999875 6777765 46889999998875
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6.7e-17 Score=154.14 Aligned_cols=189 Identities=21% Similarity=0.228 Sum_probs=148.7
Q ss_pred CcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
....++-+++.+..+|+... +++++|++++|.+ ..++...|.++++|++|++++|.++.+|. ++.+++|++|++++
T Consensus 11 ~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH 86 (266)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred CCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcC--CCcCHHHhhcccccccccccccccccccc-cccccccccccccc
Confidence 34556777778888876432 5789999999987 67777767889999999999999888774 57888999999999
Q ss_pred CCCCC-hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 118 CELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 118 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
|.+.. +..+..+++|++|+++++.+..++. .+..+.++++|++.+|. +..++...+..+++|+.+++++|.+..
T Consensus 87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~--- 162 (266)
T d1p9ag_ 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE--- 162 (266)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC---
T ss_pred ccccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccc---
Confidence 98887 7788889999999999998776644 46778899999999887 778887777888999999999888762
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEE
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKI 239 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 239 (620)
.....++.+++|++|++++|.+..+|..+.. ++|+.+.+
T Consensus 163 -----~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L 202 (266)
T d1p9ag_ 163 -----LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (266)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred -----cCccccccccccceeecccCCCcccChhHCCCCCCCEEEe
Confidence 2234577888999999999988888877544 45555544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.72 E-value=1.3e-16 Score=155.62 Aligned_cols=265 Identities=17% Similarity=0.152 Sum_probs=178.9
Q ss_pred CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
..++++.++... ..+|..+ .+.+++|++++|+++.+|+ +|.++++|++|++++|.+.. +..|.++++|++|+
T Consensus 11 ~~~~~~C~~~~L--~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~ 85 (305)
T d1xkua_ 11 HLRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 85 (305)
T ss_dssp ETTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCEEEecCCCC--CccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence 456777777666 6778754 4689999999999999985 68999999999999999887 56799999999999
Q ss_pred cCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEE
Q 007039 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE 216 (620)
Q Consensus 137 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 216 (620)
+++|.++.+|..+ ...++.|+..++. +..++...+.....++.+....+..... ......+..+++|+.++
T Consensus 86 l~~n~l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~------~~~~~~~~~l~~L~~l~ 156 (305)
T d1xkua_ 86 LSKNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIR 156 (305)
T ss_dssp CCSSCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG------GBCTTGGGGCTTCCEEE
T ss_pred ccCCccCcCccch--hhhhhhhhccccc-hhhhhhhhhhcccccccccccccccccc------CCCccccccccccCccc
Confidence 9999999998754 4688999999987 7778877677888888888877654311 22345677888899999
Q ss_pred eecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
+..+....++... .+++++| ++.+ ...
T Consensus 157 l~~n~l~~l~~~~-~~~L~~L-------------------------~l~~---------------------------n~~ 183 (305)
T d1xkua_ 157 IADTNITTIPQGL-PPSLTEL-------------------------HLDG---------------------------NKI 183 (305)
T ss_dssp CCSSCCCSCCSSC-CTTCSEE-------------------------ECTT---------------------------SCC
T ss_pred cccCCccccCccc-CCccCEE-------------------------ECCC---------------------------CcC
Confidence 9888766555431 1233333 3322 111
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEee
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD 376 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 376 (620)
....... +.+++.+++|+++++. +..+.. .....+++|++|+++++ +++.++.. ...+++|+.|++.
T Consensus 184 ~~~~~~~---~~~~~~l~~L~~s~n~-l~~~~~----~~~~~l~~L~~L~L~~N-~L~~lp~~----l~~l~~L~~L~Ls 250 (305)
T d1xkua_ 184 TKVDAAS---LKGLNNLAKLGLSFNS-ISAVDN----GSLANTPHLRELHLNNN-KLVKVPGG----LADHKYIQVVYLH 250 (305)
T ss_dssp CEECTGG---GTTCTTCCEEECCSSC-CCEECT----TTGGGSTTCCEEECCSS-CCSSCCTT----TTTCSSCCEEECC
T ss_pred CCCChhH---hhcccccccccccccc-cccccc----ccccccccceeeecccc-cccccccc----cccccCCCEEECC
Confidence 1111111 3356667777776663 333311 13345667777777775 45555432 4567788888887
Q ss_pred cCCCceeecc-----hhHHHHhcccceEEEEecC
Q 007039 377 SCRKLKYLFS-----FSMAKNLLRLQKVKVEDCD 405 (620)
Q Consensus 377 ~c~~l~~~~~-----~~~~~~l~~L~~L~l~~c~ 405 (620)
++ +++.++. .+.....++|+.|.+++.+
T Consensus 251 ~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 251 NN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp SS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 74 4666532 1123456778888887755
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.7e-17 Score=153.71 Aligned_cols=186 Identities=17% Similarity=0.124 Sum_probs=159.1
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS 99 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~ 99 (620)
+.+.+...+|. ++++++++|++++|.+..++.. .++++|++|++++|.+ ..++. ++.+++|++|++++|++..
T Consensus 17 C~~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l--~~l~~--~~~l~~L~~L~Ls~N~l~~ 91 (266)
T d1p9ag_ 17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQV--DGTLPVLGTLDLSHNQLQS 91 (266)
T ss_dssp CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEEC--CSCCTTCCEEECCSSCCSS
T ss_pred ccCCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccc--ccccc--ccccccccccccccccccc
Confidence 44555666654 5678999999999999888753 3899999999999988 56665 4789999999999999999
Q ss_pred ChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhC
Q 007039 100 LPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (620)
Q Consensus 100 lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~ 176 (620)
.+..+.++++|++|+++++.+.. ...+..+.++++|++++|.+..+|.. +..+++|+.+++++|+ +..++...+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~ 170 (266)
T d1p9ag_ 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG 170 (266)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTT
T ss_pred cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCcccccc
Confidence 99899999999999999999876 47788999999999999999988765 5679999999999998 78888877899
Q ss_pred CcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
+++|++|++++|.+. ..+..+..+++|+.|++++|..
T Consensus 171 l~~L~~L~Ls~N~L~---------~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 171 LENLDTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CTTCCEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCB
T ss_pred ccccceeecccCCCc---------ccChhHCCCCCCCEEEecCCCC
Confidence 999999999999886 2334566789999999998853
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.9e-16 Score=151.38 Aligned_cols=206 Identities=22% Similarity=0.277 Sum_probs=164.9
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCC-CCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSS 98 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~ 98 (620)
.+..+..++|. .++..++.|++++|.+..++... ++++|++|+++++.. ..++...+..+..++.+.... +.+.
T Consensus 18 c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l--~~i~~~~~~~~~~~~~l~~~~~~~~~ 94 (284)
T d1ozna_ 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLR 94 (284)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccc--cccccccccccccccccccccccccc
Confidence 44556667665 57888999999999998887643 899999999999987 666666678889999988764 4566
Q ss_pred CC-hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHH
Q 007039 99 SL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVI 174 (620)
Q Consensus 99 ~l-p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l 174 (620)
.+ |..+.++++|++|++++|.+.. +..+..+.+|+++++++|.++.+|. .+..+++|++|++++|. +..++..++
T Consensus 95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f 173 (284)
T d1ozna_ 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAF 173 (284)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTT
T ss_pred cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhh
Confidence 66 5678899999999999999776 4678889999999999999998865 47788999999999987 788888878
Q ss_pred hCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEE
Q 007039 175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKI 239 (620)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l 239 (620)
.++++|+.+++.+|.+.. .....++++++|++|+++.|....++...+. .+|+.+++
T Consensus 174 ~~l~~L~~l~l~~N~l~~--------i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l 232 (284)
T d1ozna_ 174 RGLHSLDRLLLHQNRVAH--------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (284)
T ss_dssp TTCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred ccccccchhhhhhccccc--------cChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence 999999999999988762 2346688889999999999988777765332 44444444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=5.2e-16 Score=141.99 Aligned_cols=165 Identities=24% Similarity=0.344 Sum_probs=137.8
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..++++|++.++.+..++....+++|++|++++|.+ ..++. ++.+++|++|++++|+++.+|. +.++++|++|++
T Consensus 45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i--~~l~~--~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l 119 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (210)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccc--cCccc--cccCcccccccccccccccccc-cccccccccccc
Confidence 567899999999988877666899999999999987 55654 4789999999999999988874 888999999999
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++|.+..+..+..+++|+.++++++.+...+ .+.++++|+++++++|+ +..++. ++++++|++|++++|.+.
T Consensus 120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~Ls~N~i~---- 191 (210)
T d1h6ta2 120 EHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (210)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc--ccCCCCCCEEECCCCCCC----
Confidence 9998877777888999999999999888765 57788999999999987 667765 889999999999988765
Q ss_pred cCCCCcchhhhcCCCCCCEEEeec
Q 007039 196 EGGSNASLVELERLTELTTLEIEV 219 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~ 219 (620)
.+..+.++++|+.|++++
T Consensus 192 ------~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 192 ------DLRALAGLKNLDVLELFS 209 (210)
T ss_dssp ------BCGGGTTCTTCSEEEEEE
T ss_pred ------CChhhcCCCCCCEEEccC
Confidence 235688889999998874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=7.8e-16 Score=139.54 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=126.1
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+++.|+++++.+..++....+++|++|++++|.+ ..+++ +.++++|++|++++|.+..++. +.++++|++|++
T Consensus 39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l--~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l 113 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 113 (199)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred hcCCCEEECCCCCCCCccccccCCCcCcCccccccc--cCccc--ccCCcccccccccccccccccc-cccccccccccc
Confidence 567888888888887776656788888888888876 45554 5788888888888888877774 778888888888
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
+++.......+.++++|++|++++|.+..++ .+..+++|+.|++.+|+ +..++. ++++++|++|++++|.+.
T Consensus 114 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~--l~~l~~L~~L~ls~N~i~---- 185 (199)
T d2omxa2 114 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP--LANLTTLERLDISSNKVS---- 185 (199)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCcc--ccCCCCCCEEECCCCCCC----
Confidence 8887766556778888888888888887775 57888888888888886 667765 788888888888888765
Q ss_pred cCCCCcchhhhcCCCCCCEE
Q 007039 196 EGGSNASLVELERLTELTTL 215 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L 215 (620)
.+..++++++|++|
T Consensus 186 ------~i~~l~~L~~L~~L 199 (199)
T d2omxa2 186 ------DISVLAKLTNLESL 199 (199)
T ss_dssp ------CCGGGGGCTTCSEE
T ss_pred ------CCccccCCCCCCcC
Confidence 23456777777765
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.65 E-value=6.2e-15 Score=143.56 Aligned_cols=189 Identities=16% Similarity=0.216 Sum_probs=143.5
Q ss_pred CccchhhhhhccccCCcEEEEccCCCCcCCCCc-C-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC
Q 007039 23 NVADLEKKMEETIQKDPIAISLPHRDIQELPER-L-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL 100 (620)
Q Consensus 23 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l 100 (620)
++.+..++|. .+++.+++|++++|.+..+++. + ++++|++|++++|.. ..+++..|..+++|++|++++|+++.+
T Consensus 18 ~~~~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~--~~i~~~~f~~l~~L~~L~l~~n~l~~l 94 (305)
T d1xkua_ 18 SDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKEL 94 (305)
T ss_dssp TTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBC
T ss_pred cCCCCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccc--cccchhhhhCCCccCEecccCCccCcC
Confidence 3445556665 5678899999999999888763 3 889999999999987 566555578899999999999999888
Q ss_pred hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC---CCChhccCCCCCCEEeCCCCccccccchHHHh
Q 007039 101 PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN---QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175 (620)
Q Consensus 101 p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~ 175 (620)
|..+ ..+++.|++..+.+.. ...+.....++.++...+... ..+..+..+++|+.+++.+|. +..+|..
T Consensus 95 ~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~--- 168 (305)
T d1xkua_ 95 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG--- 168 (305)
T ss_dssp CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS---
T ss_pred ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcc---
Confidence 8643 4688899999888776 356777888888888777433 335567788899999998887 6677653
Q ss_pred CCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
..++|++|++.++.... .....+.+++.++.|+++++....++..
T Consensus 169 ~~~~L~~L~l~~n~~~~--------~~~~~~~~~~~l~~L~~s~n~l~~~~~~ 213 (305)
T d1xkua_ 169 LPPSLTELHLDGNKITK--------VDAASLKGLNNLAKLGLSFNSISAVDNG 213 (305)
T ss_dssp CCTTCSEEECTTSCCCE--------ECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cCCccCEEECCCCcCCC--------CChhHhhccccccccccccccccccccc
Confidence 46788999988877652 2335677888899999888877665543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=4.3e-16 Score=141.29 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=142.4
Q ss_pred EEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCC
Q 007039 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCEL 120 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~ 120 (620)
+..+..+.+........++++++|++.++.+ .++.. +..+++|++|++++|++..++. ++++++|++|++++|.+
T Consensus 22 ~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i--~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~ 96 (199)
T d2omxa2 22 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI 96 (199)
T ss_dssp HHHTTCSSTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHhCCCCCCCccCHHHhcCCCEEECCCCCC--CCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccc
Confidence 3455666665544444678999999999987 55543 4789999999999999998876 89999999999999998
Q ss_pred CChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCC
Q 007039 121 ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN 200 (620)
Q Consensus 121 ~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 200 (620)
.....+.++++|++|+++++.+..++ .+.++++|+.|++++|. +..++. +..+++|+.|++.+|.+.
T Consensus 97 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~--------- 163 (199)
T d2omxa2 97 ADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVT--------- 163 (199)
T ss_dssp CCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCC---------
T ss_pred cccccccccccccccccccccccccc-ccchhhhhHHhhhhhhh-hccccc--cccccccccccccccccc---------
Confidence 88666899999999999999887764 58899999999999987 677765 899999999999998876
Q ss_pred cchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceE
Q 007039 201 ASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQR 236 (620)
Q Consensus 201 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~ 236 (620)
.+..++++++|++|++++|....++. +.. ++|+.
T Consensus 164 -~l~~l~~l~~L~~L~ls~N~i~~i~~-l~~L~~L~~ 198 (199)
T d2omxa2 164 -DLKPLANLTTLERLDISSNKVSDISV-LAKLTNLES 198 (199)
T ss_dssp -CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred -CCccccCCCCCCEEECCCCCCCCCcc-ccCCCCCCc
Confidence 23568899999999999998766542 222 45544
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.65 E-value=2.6e-16 Score=154.06 Aligned_cols=130 Identities=17% Similarity=0.260 Sum_probs=87.4
Q ss_pred CccEEEcccCCCC-CcccchHHHhcCCCCcEEEcCC-CCCC-CChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCE
Q 007039 60 NLQLFLLYTEGNG-PMQVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI 134 (620)
Q Consensus 60 ~Lr~L~l~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~ 134 (620)
++..|+++++... ...+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+.. +..+..+.+|++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 5666777776551 11456654 6777777777775 5554 577777777777777777777665 456777777777
Q ss_pred EecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCC-cEEEcCCCccc
Q 007039 135 LSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL-EELYMGNGFSG 191 (620)
Q Consensus 135 L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L-~~L~l~~~~~~ 191 (620)
+++++|.+. .+|..++++++|+++++++|.....+|.. +..+.++ +.+.+..+.+.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~ 187 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccc
Confidence 777777433 66777777777777777777755566665 5555554 66776666654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.63 E-value=5.7e-16 Score=151.59 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=140.7
Q ss_pred CCcEEEEccCCCCc---CCCCcC-CCCCccEEEccc-CCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCC
Q 007039 37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINL 110 (620)
Q Consensus 37 ~~lr~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L 110 (620)
.+++.|+++++.+. .+|+.. ++++|++|++++ |.. .+.+|..+ .++++|++|++++|++..+ +..+..+.+|
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l-~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L 127 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc-cccccccc-ccccccchhhhccccccccccccccchhhh
Confidence 36899999999886 356555 899999999997 555 56788875 8999999999999999764 5678899999
Q ss_pred cEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCC-CEEeCCCCccccccchHHHhCCcCCcEEEcC
Q 007039 111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRL-QLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 111 ~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L-~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 186 (620)
++++++.|.+.. |..++++++|+++++++|.+. .+|..++.+.++ +.+++++|......|.. +.++..+ .+++.
T Consensus 128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~~-~l~l~ 205 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNLA-FVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCCS-EEECC
T ss_pred cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccccc-ccccc
Confidence 999999998654 789999999999999999887 889999998886 88999998844444543 6776554 68887
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCC
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE 223 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 223 (620)
.+.... .....++.+++++.+++..+...
T Consensus 206 ~~~~~~--------~~~~~~~~~~~l~~l~~~~~~l~ 234 (313)
T d1ogqa_ 206 RNMLEG--------DASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp SSEEEE--------CCGGGCCTTSCCSEEECCSSEEC
T ss_pred cccccc--------ccccccccccccccccccccccc
Confidence 776542 23456678889999998877644
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.62 E-value=5.7e-14 Score=139.54 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=79.9
Q ss_pred CCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEcc
Q 007039 37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 116 (620)
.++++|+++++.+..+|+. .++|++|++++|.+ ..+|. .+.+|+.|++.+|.+..+++.. ..|++|+++
T Consensus 38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l--~~lp~----~~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~ 106 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSL--TELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVS 106 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC--SSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECC
T ss_pred cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCC--ccccc----chhhhhhhhhhhcccchhhhhc---ccccccccc
Confidence 4577778877777777653 45677777777766 45554 2456777777777666554311 346677777
Q ss_pred CCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcc
Q 007039 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 117 ~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
+|.+...+.++.+++|++|+++++.+...|.. ...+..+.+.++.. ..... +..++.++.+++..+..
T Consensus 107 ~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~-~~~~~--l~~l~~l~~L~l~~n~~ 174 (353)
T d1jl5a_ 107 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL-EELPE--LQNLPFLTAIYADNNSL 174 (353)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSCCC--CTTCTTCCEEECCSSCC
T ss_pred ccccccccchhhhccceeeccccccccccccc---cccccchhhccccc-ccccc--ccccccceecccccccc
Confidence 66666533456666677777666666555533 23444555554431 22111 45556666666555543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=5.6e-15 Score=134.99 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=137.9
Q ss_pred EccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC
Q 007039 43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD 122 (620)
Q Consensus 43 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 122 (620)
.+..+.+........+.+|+.|++.++.+ ..++. +..+++|++|++++|+++.++. ++++++|++|++++|.+++
T Consensus 30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i--~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~ 104 (210)
T d1h6ta2 30 NLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (210)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HhCcCccCCccCHHHhcCccEEECcCCCC--CCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccc
Confidence 34444444332222567899999999887 45543 4789999999999999998875 7889999999999999988
Q ss_pred hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcc
Q 007039 123 IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS 202 (620)
Q Consensus 123 ~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 202 (620)
++.+..+++|++|+++++.+..++ .+..+++++.++++++. +...+. +.++++|+++++.++.+. .
T Consensus 105 l~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~----------~ 170 (210)
T d1h6ta2 105 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS----------D 170 (210)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC----------C
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccc-cccccc--cccccccccccccccccc----------c
Confidence 667899999999999999888775 68889999999999987 566554 788999999999988775 2
Q ss_pred hhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEE
Q 007039 203 LVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (620)
Q Consensus 203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (620)
+..++++++|++|++++|....++. +.. ++|+.|+++
T Consensus 171 i~~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 171 IVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF 208 (210)
T ss_dssp CGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEE
T ss_pred cccccCCCCCCEEECCCCCCCCChh-hcCCCCCCEEEcc
Confidence 3458889999999999888766652 223 555555553
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.61 E-value=6.4e-14 Score=139.14 Aligned_cols=141 Identities=22% Similarity=0.242 Sum_probs=97.7
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecC
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA 138 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~ 138 (620)
.++++|+++++.. ..+|+ ..++|++|++++|+++.+|..+ .+|+.|+++++.+.....+ ...|++|+++
T Consensus 38 ~~l~~LdLs~~~L--~~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~ 106 (353)
T d1jl5a_ 38 RQAHELELNNLGL--SSLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL--PPLLEYLGVS 106 (353)
T ss_dssp HTCSEEECTTSCC--SCCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC--CTTCCEEECC
T ss_pred cCCCEEEeCCCCC--CCCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh--cccccccccc
Confidence 3678888888877 56774 3578889999988888888654 4688888888877653222 1468888888
Q ss_pred CCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEee
Q 007039 139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIE 218 (620)
Q Consensus 139 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 218 (620)
+|.+..+|. ++++++|++|+++++. ....+. ....+..+.+..+... ....++.++.++.+.+.
T Consensus 107 ~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~----~~~~l~~l~~~~~~~~----------~~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 107 NNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPD----LPPSLEFIAAGNNQLE----------ELPELQNLPFLTAIYAD 170 (353)
T ss_dssp SSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS----------SCCCCTTCTTCCEEECC
T ss_pred ccccccccc-hhhhccceeecccccc-cccccc----ccccccchhhcccccc----------ccccccccccceecccc
Confidence 888888874 6788888888888876 444443 2455666666544432 22345667778888877
Q ss_pred cCCCCCCC
Q 007039 219 VPDAEILP 226 (620)
Q Consensus 219 ~~~~~~~~ 226 (620)
.+....++
T Consensus 171 ~n~~~~~~ 178 (353)
T d1jl5a_ 171 NNSLKKLP 178 (353)
T ss_dssp SSCCSSCC
T ss_pred cccccccc
Confidence 76654433
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=2.2e-14 Score=132.96 Aligned_cols=184 Identities=17% Similarity=0.270 Sum_probs=138.7
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+++.|++.++.+..++....+++|++|++++|.+ ..+++ +.++++++++++++|.++.++. +.++++|+++++
T Consensus 40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i--~~~~~--l~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l~l 114 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDL 114 (227)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEEC
T ss_pred cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCcee--ecccc--cccccccccccccccccccccc-cccccccccccc
Confidence 567888888888888886655888899999888877 44443 5788888889888888887764 778888888888
Q ss_pred cCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 116 ~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
+++.......+.....++.+.++++.+...+ .+.++++|++|++++|. +...+. ++++++|+.|++++|.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~Ls~n~l~---- 186 (227)
T d1h6ua2 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS---- 186 (227)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred ccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccccc-cccchh--hcccccceecccCCCccC----
Confidence 8887776666777888888888888776554 46778888888888876 455544 788888888888888765
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEE
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKI 239 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l 239 (620)
.+..++++++|++|++++|....++. +.. ++|+.|++
T Consensus 187 ------~l~~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~l 224 (227)
T d1h6ua2 187 ------DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224 (227)
T ss_dssp ------CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEE
T ss_pred ------CChhhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEe
Confidence 23457788888888888887666553 222 55555555
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.57 E-value=7.1e-14 Score=129.44 Aligned_cols=170 Identities=21% Similarity=0.321 Sum_probs=146.2
Q ss_pred hhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 31 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
......+++++|++++|.+..+.+..++++++++++.++.. ..++. +.+++.|++++++++....++. +.....+
T Consensus 57 ~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~--~~i~~--l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~ 131 (227)
T d1h6ua2 57 EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNL 131 (227)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC--SCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhHhcCCCCcEeecCCceeeccccccccccccccccccccc--ccccc--ccccccccccccccccccccch-hccccch
Confidence 33455899999999999998888878999999999999987 56654 5789999999999998877654 6678899
Q ss_pred cEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcc
Q 007039 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 111 ~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~ 190 (620)
+++.++++.+.....+..+++|++|++++|.+...+ .++++++|+.|++++|+ ++.++. ++++++|++|++++|.+
T Consensus 132 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~--l~~l~~L~~L~Ls~N~l 207 (227)
T d1h6ua2 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNNQI 207 (227)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTSCC
T ss_pred hhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCc-cCCChh--hcCCCCCCEEECcCCcC
Confidence 999999998877666888999999999999888765 48999999999999997 788876 89999999999999987
Q ss_pred ccccccCCCCcchhhhcCCCCCCEEEeec
Q 007039 191 GWEKVEGGSNASLVELERLTELTTLEIEV 219 (620)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 219 (620)
+ .+..++++++|+.|+++.
T Consensus 208 t----------~i~~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 208 S----------DVSPLANTSNLFIVTLTN 226 (227)
T ss_dssp C----------BCGGGTTCTTCCEEEEEE
T ss_pred C----------CCcccccCCCCCEEEeeC
Confidence 6 234688999999999873
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.3e-14 Score=135.20 Aligned_cols=191 Identities=18% Similarity=0.192 Sum_probs=151.0
Q ss_pred EEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCC
Q 007039 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE 119 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 119 (620)
.+..++..+..+|.... +.+++|++++|.+ ..+|...|.+++.|++|+++++.+..++ ..+..+..++.+....+.
T Consensus 15 ~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~ 91 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIP-AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (284)
T ss_dssp EEECCSSCCSSCCTTCC-TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCCCCCCccCCCCC-CCCCEEECcCCcC--CCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 44566777777776432 5789999999998 7788777899999999999999988764 566778899999876544
Q ss_pred -CCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 120 -LAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 120 -~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
+.. +..+.++++|++|++++|.+..++. .+....+|+.+++++|. ++.+|..++..+++|++|++++|.+...
T Consensus 92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l-- 168 (284)
T d1ozna_ 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV-- 168 (284)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE--
T ss_pred ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCccccc--
Confidence 665 5789999999999999998887654 46778999999999988 7888887788999999999999987622
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCC
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGD 243 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~ 243 (620)
....+.++++|+.+.++.|....+.+..+. ++++.++++...
T Consensus 169 ------~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 212 (284)
T d1ozna_ 169 ------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (284)
T ss_dssp ------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ------chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence 235678899999999999987766544333 666666664433
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.7e-15 Score=145.37 Aligned_cols=171 Identities=20% Similarity=0.158 Sum_probs=96.7
Q ss_pred CccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchh
Q 007039 309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS 388 (620)
Q Consensus 309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 388 (620)
...+|++|++++|. +.++........+++|++|.+.+|. +.+..... ...+++|++|++.+|..+++.....
T Consensus 44 ~~~~L~~LdLs~~~----i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~---l~~~~~L~~L~Ls~c~~itd~~l~~ 115 (284)
T d2astb2 44 SPFRVQHMDLSNSV----IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNT---LAKNSNLVRLNLSGCSGFSEFALQT 115 (284)
T ss_dssp CCBCCCEEECTTCE----ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHH---HTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred cCCCCCEEECCCCc----cCHHHHHHHHHhCCCcccccccccC-CCcHHHHH---HhcCCCCcCccccccccccccccch
Confidence 45688999998874 1122222245667888888888874 33322221 3456788888888887776543333
Q ss_pred HHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCcc-ccccccccCCcccccc
Q 007039 389 MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLT-NIKKLWSDQFQGIYCC 467 (620)
Q Consensus 389 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~l~~~~~~~~~~l 467 (620)
.+.++++|++|++++|..+.+..... ......++|+.|++.+|. ++..-. .......+
T Consensus 116 l~~~~~~L~~L~ls~c~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~~~i~~~~--l~~l~~~~ 174 (284)
T d2astb2 116 LLSSCSRLDELNLSWCFDFTEKHVQV-------------------AVAHVSETITQLNLSGYRKNLQKSD--LSTLVRRC 174 (284)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHH-------------------HHHHSCTTCCEEECCSCGGGSCHHH--HHHHHHHC
T ss_pred hhHHHHhccccccccccccccccchh-------------------hhcccccccchhhhccccccccccc--cccccccc
Confidence 45677888888888877665432100 011224567777776653 222110 00011346
Q ss_pred CCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccc
Q 007039 468 QNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG 509 (620)
Q Consensus 468 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 509 (620)
++|++|++++|+.+++.. ...+..+++|++|++++|+.+.+
T Consensus 175 ~~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~ 215 (284)
T d2astb2 175 PNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIP 215 (284)
T ss_dssp TTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCG
T ss_pred ccccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCCh
Confidence 666666666666666542 23344566666666666665543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.4e-14 Score=137.31 Aligned_cols=252 Identities=18% Similarity=0.126 Sum_probs=136.0
Q ss_pred cEEEcCCCCCCCChhhhhcc--cCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCC--CCChhccCCCCCCEEeCCC
Q 007039 88 KVLQFPGIGSSSLPSSLGRL--INLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSN 162 (620)
Q Consensus 88 r~L~l~~~~~~~lp~~~~~l--~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~ 162 (620)
+.+|++++.+. |+.++.+ .....+.+....+.. ........+|++||+++|.+. .++..+.++++|++|++++
T Consensus 3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 46788877543 3333332 234566666555444 344455667888888877655 3455567788888888888
Q ss_pred CccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhh-hcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEe
Q 007039 163 CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVE-LERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRI 241 (620)
Q Consensus 163 ~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 241 (620)
|. +.......++++++|++|++++|... .+..+.. ..++++|++|+++++...
T Consensus 81 ~~-l~~~~~~~l~~~~~L~~L~Ls~c~~i-------td~~l~~l~~~~~~L~~L~ls~c~~~------------------ 134 (284)
T d2astb2 81 LR-LSDPIVNTLAKNSNLVRLNLSGCSGF-------SEFALQTLLSSCSRLDELNLSWCFDF------------------ 134 (284)
T ss_dssp CB-CCHHHHHHHTTCTTCSEEECTTCBSC-------CHHHHHHHHHHCTTCCEEECCCCTTC------------------
T ss_pred cC-CCcHHHHHHhcCCCCcCccccccccc-------cccccchhhHHHHhcccccccccccc------------------
Confidence 76 33322233677788888888775432 1122222 345677777777654211
Q ss_pred CCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC-hhhh-cccCCcCCCccccceEEec
Q 007039 242 GDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG-VQSV-VHELDDGEGFPRLKRLLVT 319 (620)
Q Consensus 242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~-~~~~-~~~l~~~~~~~~L~~L~l~ 319 (620)
+.......+....++|+.|++.++.. +.+. ...+ ...+|+|++|+++
T Consensus 135 -----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l--~~~~~~L~~L~L~ 183 (284)
T d2astb2 135 -----------------------------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLS 183 (284)
T ss_dssp -----------------------------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECT
T ss_pred -----------------------------ccccchhhhcccccccchhhhccccccccccccccc--ccccccccccccc
Confidence 10000111111223455555544321 1110 0000 1245677777777
Q ss_pred cCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceE
Q 007039 320 DCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV 399 (620)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 399 (620)
+|..++. ........+++|++|++++|.++++..... .+.+|+|+.|++.+|. .+.........+|+|+
T Consensus 184 ~~~~itd----~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~---L~~~~~L~~L~l~~~~--~d~~l~~l~~~lp~L~-- 252 (284)
T d2astb2 184 DSVMLKN----DCFQEFFQLNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFGIV--PDGTLQLLKEALPHLQ-- 252 (284)
T ss_dssp TCTTCCG----GGGGGGGGCTTCCEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTSS--CTTCHHHHHHHSTTSE--
T ss_pred cccCCCc----hhhhhhcccCcCCEEECCCCCCCChHHHHH---HhcCCCCCEEeeeCCC--CHHHHHHHHHhCcccc--
Confidence 7765431 122244567777888887777766544332 4568899999998882 2221222335566665
Q ss_pred EEEecCCccccc
Q 007039 400 KVEDCDDLKMII 411 (620)
Q Consensus 400 ~l~~c~~l~~~~ 411 (620)
+ +|..++.+.
T Consensus 253 -i-~~~~ls~~~ 262 (284)
T d2astb2 253 -I-NCSHFTTIA 262 (284)
T ss_dssp -E-SCCCSCCTT
T ss_pred -c-cCccCCCCC
Confidence 3 566666554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.1e-13 Score=113.83 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=59.1
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCC
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSN 141 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~ 141 (620)
|+|++++|.. ..++. +..+++|++|++++|.++++|+.++.+++|++|++++|.+++++.+..+++|++|++++|.
T Consensus 1 R~L~Ls~n~l--~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCC--CCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence 4566666655 34443 3556666666666666666665566666666666666666654446666666666666666
Q ss_pred CCCCC--hhccCCCCCCEEeCCCCc
Q 007039 142 INQLP--VEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 142 l~~lp--~~i~~l~~L~~L~l~~~~ 164 (620)
+..+| ..++.+++|++|++++|+
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCc
Confidence 66554 235556666666666654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=5.4e-13 Score=109.70 Aligned_cols=101 Identities=24% Similarity=0.250 Sum_probs=89.6
Q ss_pred cEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccc
Q 007039 88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166 (620)
Q Consensus 88 r~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 166 (620)
|+|++++|+++.++. ++.+.+|++|++++|.+++ |..++.+++|++|++++|.++.+| +++++++|++|++++|+ +
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i 77 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-L 77 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-C
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-c
Confidence 789999999998875 8899999999999999998 778999999999999999999987 58999999999999988 6
Q ss_pred cccch-HHHhCCcCCcEEEcCCCccc
Q 007039 167 EVIAP-NVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 167 ~~~p~-~~l~~l~~L~~L~l~~~~~~ 191 (620)
..++. ..+..+++|+.|++++|.+.
T Consensus 78 ~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 78 QQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCchhhcCCCCCCEEECCCCcCC
Confidence 66653 34788999999999998876
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.4e-13 Score=117.75 Aligned_cols=123 Identities=16% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-h-hhhcCCCCCCE
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEI 134 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~-~~i~~L~~L~~ 134 (620)
++.++|.|++++|.+ ..++. ++..+++|++|++++|.+..++ .+..+++|++|++++|.+.. + ..+..+++|++
T Consensus 16 n~~~lr~L~L~~n~I--~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 16 NAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp CTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCcCcEEECCCCCC--CccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence 455566666666655 44432 2345566666666666665553 25555666666666666555 2 23445666666
Q ss_pred EecCCCCCCCCCh--hccCCCCCCEEeCCCCccccccch---HHHhCCcCCcEEE
Q 007039 135 LSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAP---NVISKLSQLEELY 184 (620)
Q Consensus 135 L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~---~~l~~l~~L~~L~ 184 (620)
|++++|.+..++. .+..+++|++|++++|. +...|. ..+..+++|+.|+
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred ceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence 6666665555542 34555666666666655 344432 2345555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=9.6e-14 Score=120.35 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=54.1
Q ss_pred CcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhh-hhcccCCcEEEc
Q 007039 38 DPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCL 115 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L 115 (620)
++|.|++++|.+..++... .+++|++|++++|.+ ..++. +..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i--~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L 94 (162)
T d1a9na_ 19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 94 (162)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCcEEECCCCCCCccCccccccccCCEEECCCCCC--CccCC--cccCcchhhhhcccccccCCCcccccccccccccee
Confidence 3455555555554444332 344555555555544 23322 34445555555555554444332 234455555555
Q ss_pred cCCCCCC-h--hhhcCCCCCCEEecCCCCCCCCCh----hccCCCCCCEEe
Q 007039 116 DWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLD 159 (620)
Q Consensus 116 ~~~~~~~-~--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~ 159 (620)
++|.+.+ + ..+..+++|++|++++|.+...|. .+..+++|++||
T Consensus 95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 5554443 1 234444555555555554444432 244445555544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.33 E-value=8.8e-13 Score=118.26 Aligned_cols=122 Identities=19% Similarity=0.213 Sum_probs=75.2
Q ss_pred EEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCC-hhhhhcccCCcEEEccCCC
Q 007039 41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCE 119 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 119 (620)
+++.+++.+..+|+.. .+++++|++++|.+ ...++...|..+++|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus 12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i-~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~ 89 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEEeCCCcCccCCCC-CCCCCEEEeCCCCC-cccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence 4556666666665533 24666667766666 3334444456666777777766666554 3456666666677776666
Q ss_pred CCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCc
Q 007039 120 LAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164 (620)
Q Consensus 120 ~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 164 (620)
+.. +..|.++++|++|+|++|.++.+|.+ +..+++|++|++++|.
T Consensus 90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence 665 34566666677777766666666443 5566666666666665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.32 E-value=2.9e-12 Score=114.79 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=98.9
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-C-hhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEe
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-L-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS 136 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-l-p~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~ 136 (620)
.++++.+++.. ..+|..+ .+++++|++++|.+.. + +..|+++++|++|++++|.+.. +..+..+++|++|+
T Consensus 10 ~~~v~Cs~~~L--~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~ 84 (192)
T d1w8aa_ 10 GTTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEEeCCCc--CccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence 35778887776 6777754 3678888898888864 4 3567888888888888888776 47788888888888
Q ss_pred cCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 137 LAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 137 l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+++|.++.+|.. +.++++|++|++++|. +..+++++|..+++|++|++++|.+.
T Consensus 85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred eccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccccc
Confidence 888888887654 6788888888888887 78888777888888888888887664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.9e-12 Score=119.66 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=50.7
Q ss_pred cEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC---hhhhcCCCCCCEEec
Q 007039 62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSL 137 (620)
Q Consensus 62 r~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l 137 (620)
++++..++.. ..+|..+ .+.+++|++++|.+..+|. .|.++++|++|++++|.+.. +..|.++++++++.+
T Consensus 11 ~~i~c~~~~l--~~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~ 85 (242)
T d1xwdc1 11 RVFLCQESKV--TEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85 (242)
T ss_dssp SEEEEESCSC--SSCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred CEEEEeCCCC--CCcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence 4555555444 4555433 2355666666666655543 35556666666666655443 234555555555555
Q ss_pred CCC-CCCCCC-hhccCCCCCCEEeCCCCc
Q 007039 138 AYS-NINQLP-VEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 138 ~~~-~l~~lp-~~i~~l~~L~~L~l~~~~ 164 (620)
..+ .+..++ ..+.++++|++++++++.
T Consensus 86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~ 114 (242)
T d1xwdc1 86 EKANNLLYINPEAFQNLPNLQYLLISNTG 114 (242)
T ss_dssp ECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred cccccccccccccccccccccccccchhh
Confidence 432 444332 334555555555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=7e-12 Score=116.99 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=128.4
Q ss_pred chhhhhhccccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCC-CCCCCC-h
Q 007039 26 DLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSL-P 101 (620)
Q Consensus 26 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~l-p 101 (620)
+...+|. +++.+++.|++++|.+..++.. .++++|++|++++|.. ...++...|..++.++++.+.. +.+..+ +
T Consensus 19 ~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~-~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~ 96 (242)
T d1xwdc1 19 KVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKANNLLYINP 96 (242)
T ss_dssp SCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT-CCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred CCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccc-cceeecccccccccccccccccccccccccc
Confidence 3444443 4567788888888888877763 3788888888888876 4445555567888888888765 445443 4
Q ss_pred hhhhcccCCcEEEccCCCCCCh---hhhcCCCCCCEEecCCCCCCCCChh-ccCC-CCCCEEeCCCCccccccchHHHhC
Q 007039 102 SSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVE-IGQL-TRLQLLDLSNCWWLEVIAPNVISK 176 (620)
Q Consensus 102 ~~~~~l~~L~~L~L~~~~~~~~---~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l-~~L~~L~l~~~~~~~~~p~~~l~~ 176 (620)
..+.++++|++++++++.+..+ ..+..+..+..+....+.+..++.. +..+ ..++.|++.+++ +..++.. ..+
T Consensus 97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~-~~~ 174 (242)
T d1xwdc1 97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNC-AFN 174 (242)
T ss_dssp TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-TTT
T ss_pred ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc-ccccccc-ccc
Confidence 5677888888888888887652 3444555666666666667666432 3444 478888888876 6777766 344
Q ss_pred CcCCcEEE-cCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcc
Q 007039 177 LSQLEELY-MGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF 229 (620)
Q Consensus 177 l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 229 (620)
..+++.+. +.++.+.. -....+.++++|+.|++++|....+|.+.
T Consensus 175 ~~~l~~~~~l~~n~l~~--------l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 220 (242)
T d1xwdc1 175 GTQLDELNLSDNNNLEE--------LPNDVFHGASGPVILDISRTRIHSLPSYG 220 (242)
T ss_dssp TCCEEEEECTTCTTCCC--------CCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred chhhhcccccccccccc--------ccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence 55555554 45554441 11234678888999999888887777653
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.21 E-value=2.3e-13 Score=122.25 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEe
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS 136 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~ 136 (620)
.+++|+.|++++|.+ ..++. +..+++|++|++++|.+..+|.....+++|++|++++|.++.++.+..+++|++|+
T Consensus 46 ~L~~L~~L~Ls~n~I--~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~ 121 (198)
T d1m9la_ 46 TLKACKHLALSTNNI--EKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCCEEECSEEEE--SCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred cccccceeECcccCC--CCccc--ccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 566666666666655 34432 35666666666666666666554445556666666666666644456666666666
Q ss_pred cCCCCCCCCCh--hccCCCCCCEEeCCCCc
Q 007039 137 LAYSNINQLPV--EIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 137 l~~~~l~~lp~--~i~~l~~L~~L~l~~~~ 164 (620)
+++|.++.++. .+..+++|++|++++|+
T Consensus 122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccchhccccccccccCCCccceeecCCCc
Confidence 66666665542 45666666666666654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.4e-12 Score=134.29 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=70.1
Q ss_pred CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-----CChhhhhcccCCcEEEccCCCCCC--hhhh----c-
Q 007039 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-----SLPSSLGRLINLQTLCLDWCELAD--IAAI----G- 127 (620)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~--~~~i----~- 127 (620)
+|++|+++++.+ ...-...++..++++|+|+|.+|.+. .++..+..+++|++|+|++|.+.+ ...+ .
T Consensus 3 ~l~~ld~~~~~i-~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 3 DIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEESCCC-CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEeeCCcC-ChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 567788877776 33222344567788888888888765 245566777888888888887754 2222 2
Q ss_pred CCCCCCEEecCCCCCCC-----CChhccCCCCCCEEeCCCCc
Q 007039 128 QLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 128 ~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~ 164 (620)
.-.+|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence 22468888888887763 34556778888888888876
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.12 E-value=3.1e-12 Score=114.76 Aligned_cols=106 Identities=23% Similarity=0.272 Sum_probs=48.4
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
..+++|++|++++|.++.++ .+..+++|++|++++|.+.+ +..+..+.+|++|++++|.++.++ .+..+++|++|++
T Consensus 45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L 122 (198)
T d1m9la_ 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 44555555555555554443 24445555555555554444 222233334555555555444442 2444445555555
Q ss_pred CCCccccccch-HHHhCCcCCcEEEcCCCcc
Q 007039 161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFS 190 (620)
Q Consensus 161 ~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~ 190 (620)
++|. +..++. ..+..+++|+.|++++|.+
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred ccch-hccccccccccCCCccceeecCCCcc
Confidence 4443 333321 1244444444444444433
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.3e-09 Score=91.46 Aligned_cols=102 Identities=23% Similarity=0.158 Sum_probs=57.3
Q ss_pred CccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCC-CCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEE
Q 007039 60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEIL 135 (620)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L 135 (620)
....+++.++.. .++|..+ ..+++|++|++.++. ++.++ ..|.++++|++|++++|.++. +..|..+++|++|
T Consensus 9 ~~~~l~c~~~~~--~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 9 GSSGLRCTRDGA--LDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp SSSCEECCSSCC--CTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CCCeEEecCCCC--ccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 334455555444 3444442 455666666665443 55553 345566666666666666555 3456666666666
Q ss_pred ecCCCCCCCCChhccCCCCCCEEeCCCCc
Q 007039 136 SLAYSNINQLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 136 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 164 (620)
+|++|.++.+|.++....+|++|++++|.
T Consensus 86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 86 NLSFNALESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp ECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred eccCCCCcccChhhhccccccccccCCCc
Confidence 66666666666555544556666666654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.9e-11 Score=122.34 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=76.9
Q ss_pred CCCcEEEcCCCCCCC--ChhhhhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCC-----CChhcc-
Q 007039 85 EGLKVLQFPGIGSSS--LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ-----LPVEIG- 150 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~-----lp~~i~- 150 (620)
..|++|+++++++.. +.+.++.++++++|+|++|.+++ . ..+..+++|++|++++|.++. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 368899999999875 45667788999999999998874 2 456788899999999987752 222222
Q ss_pred CCCCCCEEeCCCCccccccch----HHHhCCcCCcEEEcCCCccc
Q 007039 151 QLTRLQLLDLSNCWWLEVIAP----NVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~p~----~~l~~l~~L~~L~l~~~~~~ 191 (620)
...+|++|++++|. ++.... .++..+++|++|++++|.+.
T Consensus 82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence 23579999999887 544321 22567788889988888764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=4.3e-09 Score=89.73 Aligned_cols=105 Identities=22% Similarity=0.199 Sum_probs=87.1
Q ss_pred CCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCC-CCC--hhhhcCCCCCCEEecCCCCCCCCC-hhccCCCCCCEEeC
Q 007039 85 EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE-LAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDL 160 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~-~~~--~~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l 160 (620)
....+++..++...+.|..+..+++|++|+++++. ++. +..|..+++|+.|++++|.++.++ ..+..+++|++|++
T Consensus 8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 34556788888888888888899999999998775 776 477899999999999999999885 45889999999999
Q ss_pred CCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 161 ~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|+ ++.+|.+++..+ .|++|++++|.+.
T Consensus 88 s~N~-l~~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 88 SFNA-LESLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp CSSC-CSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred cCCC-CcccChhhhccc-cccccccCCCccc
Confidence 9988 888888755544 6999999888764
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.70 E-value=5.9e-09 Score=102.19 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=111.0
Q ss_pred cCCcEEEEccCCCCc-----CCCCcC-CCCCccEEEcccCCCC--Ccccch------HHHhcCCCCcEEEcCCCCCCC--
Q 007039 36 QKDPIAISLPHRDIQ-----ELPERL-QCPNLQLFLLYTEGNG--PMQVSD------HFFEGMEGLKVLQFPGIGSSS-- 99 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~--~~~~~~------~~~~~l~~Lr~L~l~~~~~~~-- 99 (620)
..+++.|++++|.+. .+.... ..++|+.+.+.++... ....+. ..+..+++|++|++++|.+..
T Consensus 30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 109 (344)
T d2ca6a1 30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 109 (344)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence 566888888888662 222222 6788888888776531 111111 123456788888888887653
Q ss_pred ---ChhhhhcccCCcEEEccCCCCCC--hhh-------------hcCCCCCCEEecCCCCCC-----CCChhccCCCCCC
Q 007039 100 ---LPSSLGRLINLQTLCLDWCELAD--IAA-------------IGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQ 156 (620)
Q Consensus 100 ---lp~~~~~l~~L~~L~L~~~~~~~--~~~-------------i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~ 156 (620)
+...+..+++|+.|++++|.+.. ... ......|+.++++++.+. .+...+...++|+
T Consensus 110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~ 189 (344)
T d2ca6a1 110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence 44556667888888888887542 111 134567888888877665 2334456677888
Q ss_pred EEeCCCCcccccc-----chHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 157 LLDLSNCWWLEVI-----APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 157 ~L~l~~~~~~~~~-----p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
.|++++|. +... ....+...++|++|++++|.+.... ..+....+...++|++|++++|..
T Consensus 190 ~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g----~~~L~~~l~~~~~L~~L~Ls~n~i 255 (344)
T d2ca6a1 190 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLL 255 (344)
T ss_dssp EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred cccccccc-ccccccccchhhhhcchhhhcccccccccccccc----cccccccccccccchhhhhhcCcc
Confidence 88888876 3321 1122556777888888777654110 112234556777788888777654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.54 E-value=6.5e-08 Score=94.52 Aligned_cols=205 Identities=16% Similarity=0.183 Sum_probs=134.6
Q ss_pred cCCcEEEEccCCCCcCCC-----------C-cCCCCCccEEEcccCCCCCccc--chHHHhcCCCCcEEEcCCCCCCC--
Q 007039 36 QKDPIAISLPHRDIQELP-----------E-RLQCPNLQLFLLYTEGNGPMQV--SDHFFEGMEGLKVLQFPGIGSSS-- 99 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~-----------~-~~~~~~Lr~L~l~~~~~~~~~~--~~~~~~~l~~Lr~L~l~~~~~~~-- 99 (620)
.++++.+.+.++...... . ...+++|+.|++++|......+ ....+...++|++|++++|.+..
T Consensus 58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 137 (344)
T d2ca6a1 58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 137 (344)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence 678999999877543221 1 2267899999999987622211 12234678999999999988632
Q ss_pred ---Chhh---------hhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCC------CChhccCCCCC
Q 007039 100 ---LPSS---------LGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ------LPVEIGQLTRL 155 (620)
Q Consensus 100 ---lp~~---------~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~------lp~~i~~l~~L 155 (620)
+... ....+.|++++++++.+.+ . ..+...++|++|++++|.+.. +...+..+++|
T Consensus 138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L 217 (344)
T d2ca6a1 138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 217 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence 1111 1346789999999988764 2 446678899999999998763 33456778999
Q ss_pred CEEeCCCCccccc-----cchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcC--CCCCCEEEeecCCCCCC---
Q 007039 156 QLLDLSNCWWLEV-----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER--LTELTTLEIEVPDAEIL--- 225 (620)
Q Consensus 156 ~~L~l~~~~~~~~-----~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~--- 225 (620)
++|++++|. ++. +.. .+...++|++|++++|.+.... .......+.+ ...|++|++++|....-
T Consensus 218 ~~L~Ls~N~-i~~~g~~~L~~-~l~~~~~L~~L~Ls~n~i~~~g----~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~ 291 (344)
T d2ca6a1 218 KVLDLQDNT-FTHLGSSALAI-ALKSWPNLRELGLNDCLLSARG----AAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 291 (344)
T ss_dssp CEEECCSSC-CHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHH----HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred ccccccccc-ccccccccccc-cccccccchhhhhhcCccCchh----hHHHHHHhhhccCCCCCEEECCCCcCChHHHH
Confidence 999999987 332 222 2678899999999998875211 0122233443 35699999999875431
Q ss_pred --CCccc-c-cCceEEEEEeCCCCC
Q 007039 226 --PPDFV-S-VELQRYKIRIGDGPE 246 (620)
Q Consensus 226 --~~~~~-~-~~L~~L~l~~~~~~~ 246 (620)
...+. . +.|+.|++....+..
T Consensus 292 ~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 292 TLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHccCCCCCEEECCCCcCCC
Confidence 22222 2 678888885554433
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=9.3e-06 Score=68.96 Aligned_cols=82 Identities=23% Similarity=0.108 Sum_probs=56.1
Q ss_pred hHHHhcCCCCcEEEcCCCCCCCC---hhhhhcccCCcEEEccCCCCCChh--hhcCCCCCCEEecCCCCCCCCC------
Q 007039 78 DHFFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLP------ 146 (620)
Q Consensus 78 ~~~~~~l~~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~L~~~~~~~~~--~i~~L~~L~~L~l~~~~l~~lp------ 146 (620)
..++..++.|++|++++|++..+ +..+..+++|++|++++|.+++.. ...+..+|+.|++++|.+....
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 34456788899999999888765 345677888888888888888732 2223446788888888776432
Q ss_pred --hhccCCCCCCEEe
Q 007039 147 --VEIGQLTRLQLLD 159 (620)
Q Consensus 147 --~~i~~l~~L~~L~ 159 (620)
..+..+++|+.||
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 1245566677665
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=1e-06 Score=75.18 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=49.0
Q ss_pred hhhhhcccCCcEEEccCCCCCCh----hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccc-----
Q 007039 101 PSSLGRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIA----- 170 (620)
Q Consensus 101 p~~~~~l~~L~~L~L~~~~~~~~----~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p----- 170 (620)
+....++++|++|++++|.++.. ..+..+++|++|++++|.++.++. ...+..+|+.|++++|.......
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 33445677777777777776651 345567777777777777776654 12233456777777765322111
Q ss_pred -hHHHhCCcCCcEEE
Q 007039 171 -PNVISKLSQLEELY 184 (620)
Q Consensus 171 -~~~l~~l~~L~~L~ 184 (620)
..++..+++|+.|+
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 12244566666664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.23 E-value=0.00038 Score=58.91 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=37.5
Q ss_pred cCCCCcEEEcCCCC-CCC-----ChhhhhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCC-----CC
Q 007039 83 GMEGLKVLQFPGIG-SSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QL 145 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~-~~~-----lp~~~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~l 145 (620)
+.+.|+.|+++++. +.. +-..+....+|++|++++|.+.+ . ..+...+.|++|++++|.+. .+
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 34555555555432 321 22334444455555555555442 1 23334455555555555544 12
Q ss_pred ChhccCCCCCCEEeCCCC
Q 007039 146 PVEIGQLTRLQLLDLSNC 163 (620)
Q Consensus 146 p~~i~~l~~L~~L~l~~~ 163 (620)
-..+...+.|++|+++++
T Consensus 93 ~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHHhCCcCCEEECCCC
Confidence 233444555566665554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.01 E-value=0.00052 Score=58.02 Aligned_cols=106 Identities=9% Similarity=-0.012 Sum_probs=72.2
Q ss_pred CCCCccEEEcccCC-CCCcccc---hHHHhcCCCCcEEEcCCCCCC-----CChhhhhcccCCcEEEccCCCCCC--h--
Q 007039 57 QCPNLQLFLLYTEG-NGPMQVS---DHFFEGMEGLKVLQFPGIGSS-----SLPSSLGRLINLQTLCLDWCELAD--I-- 123 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~-~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~~~~--~-- 123 (620)
+.+.|+.|+++++. + ..+.- ...+...+.|++|++++|.+. .+...+...+.|++|++++|.+.+ .
T Consensus 13 n~~~L~~L~L~~~~~i-~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCCCcEEEeCCCCCC-CHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 45678888887643 3 22111 122456678999999998874 345667777889999999998875 2
Q ss_pred --hhhcCCCCCCEEecCCCCCCCC--------ChhccCCCCCCEEeCCCC
Q 007039 124 --AAIGQLKKLEILSLAYSNINQL--------PVEIGQLTRLQLLDLSNC 163 (620)
Q Consensus 124 --~~i~~L~~L~~L~l~~~~l~~l--------p~~i~~l~~L~~L~l~~~ 163 (620)
..+..-+.|++|+++++.+..+ ...+..-++|+.|+++.+
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 4567778899999998865543 333445677777777654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.56 E-value=0.0017 Score=54.64 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=39.0
Q ss_pred hcCCCCcEEEcCCC-CCCC-----ChhhhhcccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCC-----C
Q 007039 82 EGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----Q 144 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~-~~~~-----lp~~~~~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~-----~ 144 (620)
.+.+.|++|+++++ .+.. +-..+...++|++|++++|.+.+ . ..+...+.++.++++++.+. .
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 44556666666552 2321 23344455556666666665543 1 23344555666665555443 2
Q ss_pred CChhccCCCCCCEEeCC
Q 007039 145 LPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 145 lp~~i~~l~~L~~L~l~ 161 (620)
+...+...++|+.+++.
T Consensus 94 l~~~l~~~~~L~~l~L~ 110 (166)
T d1io0a_ 94 LVEALQSNTSLIELRID 110 (166)
T ss_dssp HHHGGGGCSSCCEEECC
T ss_pred HHHHHHhCccccEEeec
Confidence 23344445555554443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.39 E-value=0.0024 Score=53.71 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=70.6
Q ss_pred CCCCccEEEcccCC-CCCccc---chHHHhcCCCCcEEEcCCCCCCC-----ChhhhhcccCCcEEEccCCCCCC--h--
Q 007039 57 QCPNLQLFLLYTEG-NGPMQV---SDHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD--I-- 123 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~-~~~~~~---~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~~~~l~~L~~L~L~~~~~~~--~-- 123 (620)
+.+.|+.|.+.+.. + .... ....+...++|++|++++|.+.. +.+.+.....++.+++++|.+.+ .
T Consensus 15 ~~~~L~~L~L~~~~~i-~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCcEEEcCCCCCC-CHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 45677777777632 3 2211 11223567888899999888752 45566677889999999888764 1
Q ss_pred --hhhcCCCCCCEEecC--CCCCC-----CCChhccCCCCCCEEeCCCCc
Q 007039 124 --AAIGQLKKLEILSLA--YSNIN-----QLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 124 --~~i~~L~~L~~L~l~--~~~l~-----~lp~~i~~l~~L~~L~l~~~~ 164 (620)
..+...++|+.+++. ++.+. .+...+.+.++|++|+++.+.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 566778888876664 44554 344556677888888876654
|