Citrus Sinensis ID: 007065

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEVCSQTPYELLFKYDKIYFSSYICSMPDA
cccccEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEccccccccccEEEccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccccccccccccccccccccccccHHccccccccHHHHHHHHHHccccEEEcccccccHHHHHHHHcccccccccccccccccccEEEEEccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEcccccccccccccccccEEEEEEcccccccc
ccccEEEEEEEccHcccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccccccEEEEccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccccEccccccccccccccccccccccccHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEccccccHHHHEEccEEEEEEEEcccccc
MSEKQLIVAVEgtaamgpywQSIVSDYLEKIIRCFCVnelagqktsasNVELSLVTFNTHGsycaclvqrsgwtkDVDIFLHWLstipfagggfndAAIAEGLSEALMMFsvapngsqnqqnvdgqRHCILVaasnphplptpvyrpqmqnldqnenNEAQAESRLSDAETVAKSFVQCSVslsvicpkqlpkLTAIYNAakrnpraadppvdnsknphFLVLISENFMEARAAlsrpgvanlapnqnpvkmdiapvtsvtgpaptsipsvnginrppisvgnvptatvkvepstvtsmvngptfphipsvprpasqgvpslqtsspsstsqemitsgdsvpevkplvsgmsqplrpmapaaaNVNILNNLSQARQVMNNAaltggtsiglqsmgqtpmaMHMSNMIssgmassvptsqpvfssaqsgitsiggsgtltgtsqvpqnsglnsftsapsnlsgnsnpsisqpmgtlqggasmgqsvgmsqgnhsggqmvQNGISMNqnmmsglgpsgvssgtgtmiptpgmsqqaqsgmqplsvnnnTAVNMQLSQQTSSALHSSQSKYVKVWegslsgqrqgqpvfitklevcsqtpYELLFKYDKIYFSSYICSMPDA
MSEKQLIVAvegtaamgpyWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVslsvicpkqlPKLTAIYNAAKRnpraadppvdnskNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTsipsvnginrppiSVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEVCSQTPYELLFKYDKIYFSSYICSMPDA
MSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVpslqtsspsstsqEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQsgitsiggsgtltgtsQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEVCSQTPYELLFKYDKIYFSSYICSMPDA
*****LIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSV**************RHCILVA**************************************VAKSFVQCSVSLSVICPKQLPKLTAIYNA******************HFLVLISENFMEAR**************************************************************************************************************************************IL*******************************************************************************************************************************************************************************************************YVKVWEGSLSGQRQGQPVFITKLEVCSQTPYELLFKYDKIYFSSYIC*****
*SEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFS****************HCILVAASNPHPLPTPVY*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ELLFKYDKIYFSSYICSMP**
MSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQ****************TVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVP***************************SVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSG*****************GITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTP**********QPLSVNNNTAVNMQ****************VKVWEGSLSGQRQGQPVFITKLEVCSQTPYELLFKYDKIYFSSYICSMPDA
**EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAAL**************************************************************************************************************P*VSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITS**GSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVG****NHSGGQMVQNGISM*******L**********T**PTP*MS****S*MQPL***********************QSKYVKVWEGSLSGQRQGQPVFITKLEVCSQTPYELLFKYDKIYFSSYICSM***
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MSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNxxxxxxxxxxxxxxxxxxxxxAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEVCSQTPYELLFKYDKIYFSSYICSMPDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query619 2.2.26 [Sep-21-2011]
Q7XYY2 836 Mediator of RNA polymeras yes no 0.917 0.679 0.626 0.0
Q6GP15 801 Mediator of RNA polymeras N/A no 0.352 0.272 0.282 8e-17
A4IHD9 805 Mediator of RNA polymeras yes no 0.342 0.263 0.288 1e-16
A2VE44 746 Mediator of RNA polymeras yes no 0.313 0.260 0.285 5e-14
Q8VCB2 745 Mediator of RNA polymeras yes no 0.315 0.261 0.278 1e-13
Q71SY5 747 Mediator of RNA polymeras yes no 0.313 0.259 0.281 2e-13
Q6PEH8701 Mediator of RNA polymeras yes no 0.306 0.271 0.282 2e-13
Q9VDR1 863 Mediator of RNA polymeras yes no 0.334 0.239 0.225 3e-07
>sp|Q7XYY2|MED25_ARATH Mediator of RNA polymerase II transcription subunit 25 OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1 Back     alignment and function desciption
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/594 (62%), Positives = 453/594 (76%), Gaps = 26/594 (4%)

Query: 4   KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY 63
           KQLIV  EGTAA+GPYWQ+IVSDYLEKIIR FC +EL G++   S VELSLV FN+HGSY
Sbjct: 6   KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65

Query: 64  CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV 123
           CACLVQRSGWT+DVDIFLHWLS+I F GGGFN+ A AEGL+EALMMFS  P   Q Q + 
Sbjct: 66  CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS--PPSGQAQPSN 123

Query: 124 DGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSL 183
           D +RHCIL+ ASNPH LPTPVYRP++QN+++NEN +AQAESRLSDAETVA  F +CSVSL
Sbjct: 124 DLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSL 183

Query: 184 SVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANL 243
           SV+CPKQLP + A+YNA K N ++AD  +D +KN  +LVLISENF+EA AALS     NL
Sbjct: 184 SVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNL 242

Query: 244 APNQNPVKMD---IAPVTSVTGPAPTSIPSVNG--INRPPISVGNVPTATVKVEPSTVTS 298
              Q+PVK+D   +AP   VTG  P  + S NG   NR P+SVG VPTATVKVEPSTVTS
Sbjct: 243 PQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTS 302

Query: 299 MVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKP-LVSGMSQPLRP 357
           M   P+FPHIP+V RPA+Q +PS+QTSS S  SQ+M+++ ++ P++KP +VSGM+ PLR 
Sbjct: 303 MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRT 362

Query: 358 MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPT 417
             P  ANVN+LNNLSQ RQVM++AAL G  S    S+GQ+ +AMHMSNMIS+GMA+S+P 
Sbjct: 363 GPPGGANVNLLNNLSQVRQVMSSAALAGAAS----SVGQSAVAMHMSNMISTGMATSLPP 418

Query: 418 SQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQG 477
           SQ VFS+ Q GITS+ GSG L G++Q  Q+ G N+  S  +  +  SN  +SQPM     
Sbjct: 419 SQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ---- 474

Query: 478 GASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSG 537
                   GM+QG+HSG  M+Q GISMNQNMMSGLG   VSSGTG M+PTPG+ QQAQSG
Sbjct: 475 --------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSG 525

Query: 538 MQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLE 591
           +Q L  +N++A NMQLSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LE
Sbjct: 526 IQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLE 579
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Positive regulator of shade avoidance and of jasmonate signaling. Acts in repression of PhyB-mediated light signaling and regulates the expression of FLOWERING LOCUS T (FT) and of CONSTANS (CO).
Arabidopsis thaliana (taxid: 3702)
>sp|Q6GP15|MED25_XENLA Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus laevis GN=med25 PE=2 SV=1 Back     alignment and function description
>sp|A4IHD9|MED25_XENTR Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus tropicalis GN=med25 PE=2 SV=1 Back     alignment and function description
>sp|A2VE44|MED25_BOVIN Mediator of RNA polymerase II transcription subunit 25 OS=Bos taurus GN=MED25 PE=2 SV=1 Back     alignment and function description
>sp|Q8VCB2|MED25_MOUSE Mediator of RNA polymerase II transcription subunit 25 OS=Mus musculus GN=Med25 PE=1 SV=1 Back     alignment and function description
>sp|Q71SY5|MED25_HUMAN Mediator of RNA polymerase II transcription subunit 25 OS=Homo sapiens GN=MED25 PE=1 SV=2 Back     alignment and function description
>sp|Q6PEH8|MED25_DANRE Mediator of RNA polymerase II transcription subunit 25 OS=Danio rerio GN=med25 PE=2 SV=1 Back     alignment and function description
>sp|Q9VDR1|MED25_DROME Mediator of RNA polymerase II transcription subunit 25 OS=Drosophila melanogaster GN=MED25 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
225423909 827 PREDICTED: uncharacterized protein LOC10 0.954 0.714 0.790 0.0
297737854 815 unnamed protein product [Vitis vinifera] 0.936 0.711 0.777 0.0
224111730 796 predicted protein [Populus trichocarpa] 0.940 0.731 0.764 0.0
255576521561 conserved hypothetical protein [Ricinus 0.836 0.923 0.777 0.0
449434652 858 PREDICTED: mediator of RNA polymerase II 0.938 0.677 0.687 0.0
449519677595 PREDICTED: mediator of RNA polymerase II 0.938 0.976 0.687 0.0
356502460 879 PREDICTED: uncharacterized protein LOC10 0.940 0.662 0.693 0.0
312283021 852 unnamed protein product [Thellungiella h 0.912 0.663 0.637 0.0
30689268 836 phytochrome and flowering time regulator 0.917 0.679 0.626 0.0
297845606 832 hypothetical protein ARALYDRAFT_472815 [ 0.917 0.682 0.626 0.0
>gi|225423909|ref|XP_002278845.1| PREDICTED: uncharacterized protein LOC100259509 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/593 (79%), Positives = 524/593 (88%), Gaps = 2/593 (0%)

Query: 1   MSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTH 60
           M+EKQL+VAVEGTAAMGPYWQ++VSDYL+KIIR FC NELAGQK S+SN ELSLV FN H
Sbjct: 1   MAEKQLVVAVEGTAAMGPYWQAVVSDYLDKIIRYFCGNELAGQKPSSSNFELSLVMFNAH 60

Query: 61  GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQ 120
           GSYC+CLVQRSGWT+DVD+FL WLS +PFAGGGFNDAAIAEGL+EALMMFSVA NGSQ Q
Sbjct: 61  GSYCSCLVQRSGWTRDVDLFLQWLSALPFAGGGFNDAAIAEGLAEALMMFSVAANGSQTQ 120

Query: 121 QNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCS 180
           QNVDGQRHCILVAA+NP+PLPTPVY+PQMQN++QNE+ E+Q ESRLSDAE VAKSF QCS
Sbjct: 121 QNVDGQRHCILVAANNPYPLPTPVYQPQMQNMEQNESIESQTESRLSDAEAVAKSFAQCS 180

Query: 181 VSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGV 240
           VSLSVICPKQLPKL +IYNA KRNPR ADPPVDN KNPHFLVLIS++FMEARAALSRPG+
Sbjct: 181 VSLSVICPKQLPKLKSIYNAGKRNPRVADPPVDNVKNPHFLVLISDSFMEARAALSRPGL 240

Query: 241 ANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGI-NRPPISVGNVPTATVKVEPSTVTSM 299
           +N+  NQ+PVKMDIA V  V+   P SIPSVNGI NRP I+VG VPTATVKVEPSTVTS+
Sbjct: 241 SNMTANQSPVKMDIASVPQVSAAPPASIPSVNGIMNRPTIAVGAVPTATVKVEPSTVTSI 300

Query: 300 VNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMA 359
            +GP FPHIPSVPR ASQGVPSLQTSSPSSTSQEMI++GD+V ++KP+VSG+SQ LRP+ 
Sbjct: 301 TSGPGFPHIPSVPRAASQGVPSLQTSSPSSTSQEMISNGDNVQDLKPIVSGISQTLRPVV 360

Query: 360 PAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQ 419
           PAAANV+ILNNLSQARQVM++AAL+GGTSIGLQSMG T MAMHMSNMISSGMASSVP +Q
Sbjct: 361 PAAANVSILNNLSQARQVMHSAALSGGTSIGLQSMGGTSMAMHMSNMISSGMASSVPATQ 420

Query: 420 PVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGA 479
            VFSS QS ++SI GSGTL GT+QV QNS L SFTSA SN+S NSN  ISQP+  LQGG 
Sbjct: 421 TVFSSGQSAVSSITGSGTLAGTAQVAQNSALGSFTSATSNMSVNSNLGISQPLSNLQGGV 480

Query: 480 SMGQSV-GMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGM 538
           SMGQ+V GMSQGN  GGQMVQ+GI MNQNMMSGLGPSG+SSGTGTMIPTPGMSQQ Q GM
Sbjct: 481 SMGQTVPGMSQGNLPGGQMVQSGIGMNQNMMSGLGPSGISSGTGTMIPTPGMSQQVQPGM 540

Query: 539 QPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLE 591
             L VNNN A NM L QQTS A+ ++QSKYVKVWEG+LSGQRQGQPVFIT+LE
Sbjct: 541 PSLGVNNNAAANMPLPQQTSGAMQTAQSKYVKVWEGNLSGQRQGQPVFITRLE 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737854|emb|CBI27055.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111730|ref|XP_002315956.1| predicted protein [Populus trichocarpa] gi|222864996|gb|EEF02127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576521|ref|XP_002529152.1| conserved hypothetical protein [Ricinus communis] gi|223531431|gb|EEF33265.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449434652|ref|XP_004135110.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519677|ref|XP_004166861.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502460|ref|XP_003520037.1| PREDICTED: uncharacterized protein LOC100801664 [Glycine max] Back     alignment and taxonomy information
>gi|312283021|dbj|BAJ34376.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|30689268|ref|NP_173925.3| phytochrome and flowering time regulatory protein 1 [Arabidopsis thaliana] gi|75145501|sp|Q7XYY2.1|MED25_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 25; Short=AtMED25; AltName: Full=Phytochrome and flowering time 1 protein; AltName: Full=Phytochrome and flowering time regulatory protein 1 gi|32478899|gb|AAO39425.1| phytochrome and flowering time 1 protein [Arabidopsis thaliana] gi|332192518|gb|AEE30639.1| phytochrome and flowering time regulatory protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845606|ref|XP_002890684.1| hypothetical protein ARALYDRAFT_472815 [Arabidopsis lyrata subsp. lyrata] gi|297336526|gb|EFH66943.1| hypothetical protein ARALYDRAFT_472815 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
TAIR|locus:2031200 836 PFT1 "PHYTOCHROME AND FLOWERIN 0.917 0.679 0.597 1.2e-177
UNIPROTKB|F1N3D4 743 MED25 "Mediator of RNA polymer 0.213 0.177 0.333 1.2e-12
UNIPROTKB|A2VE44 746 MED25 "Mediator of RNA polymer 0.213 0.176 0.333 3.8e-12
UNIPROTKB|F1RHT9 746 MED25 "Uncharacterized protein 0.213 0.176 0.333 4.1e-12
MGI|MGI:1922863 745 Med25 "mediator of RNA polymer 0.213 0.177 0.333 7.7e-12
UNIPROTKB|Q71SY5 747 MED25 "Mediator of RNA polymer 0.213 0.176 0.333 1.6e-10
ZFIN|ZDB-GENE-040426-2850701 med25 "mediator of RNA polymer 0.394 0.348 0.268 3.1e-10
WB|WBGene00019435 2232 K06A9.1 [Caenorhabditis elegan 0.554 0.153 0.220 6e-06
FB|FBgn0038760 863 MED25 "Mediator complex subuni 0.290 0.208 0.22 1.3e-05
POMBASE|SPAPB1E7.04c 1236 SPAPB1E7.04c "chitinase (predi 0.476 0.238 0.212 2.9e-05
TAIR|locus:2031200 PFT1 "PHYTOCHROME AND FLOWERING TIME 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 355/594 (59%), Positives = 433/594 (72%)

Query:     4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSY 63
             KQLIV  EGTAA+GPYWQ+IVSDYLEKIIR FC +EL G++   S VELSLV FN+HGSY
Sbjct:     6 KQLIVVAEGTAALGPYWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSY 65

Query:    64 CACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNV 123
             CACLVQRSGWT+DVDIFLHWLS+I F GGGFN+ A AEGL+EALMMFS  P+G Q Q + 
Sbjct:    66 CACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS-PPSG-QAQPSN 123

Query:   124 DGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSL 183
             D +RHCIL+ ASNPH LPTPVYRP++QN+++NEN +AQAESRLSDAETVA  F +CSVSL
Sbjct:   124 DLKRHCILITASNPHILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSL 183

Query:   184 SVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANL 243
             SV+CPKQLP + A+YNA K N ++AD  +D +KN  +LVLISENF+EA AALS     NL
Sbjct:   184 SVVCPKQLPTIRALYNAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNL 242

Query:   244 APNQNPVKMD---IAPVTSVTGPAPTSIPSVNGI--NRPPISVGNVPTATVKVEPSTVTS 298
                Q+PVK+D   +AP   VTG  P  + S NG   NR P+SVG VPTATVKVEPSTVTS
Sbjct:   243 PQTQSPVKVDRATVAPSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTS 302

Query:   299 MVNGPTFPHIPSVPRPASQGVXXXXXXXXXXXXXEMITSGDSVPEVKPLV-SGMSQPLRP 357
             M   P+FPHIP+V RPA+Q +             +M+++ ++ P++KP+V SGM+ PLR 
Sbjct:   303 MAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRT 362

Query:   358 MAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPT 417
               P  ANVN+LNNLSQ RQVM++AAL G  S    S+GQ+ +AMHMSNMIS+GMA+S+P 
Sbjct:   363 GPPGGANVNLLNNLSQVRQVMSSAALAGAAS----SVGQSAVAMHMSNMISTGMATSLPP 418

Query:   418 SQPVFSSAQXXXXXXXXXXXXXXXXQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQG 477
             SQ VFS+ Q                Q  Q+ G N+  S  +  +  SN  +SQPM     
Sbjct:   419 SQTVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ---- 474

Query:   478 GASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSG 537
                     GM+QG+HSG  M+Q GISMNQNMMSGLG   VSSGTG M+PTPG+ QQAQSG
Sbjct:   475 --------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSG 525

Query:   538 MQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLE 591
             +Q L  +N++A NMQLSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LE
Sbjct:   526 IQQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLE 579
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003713 "transcription coactivator activity" evidence=NAS
GO:0010114 "response to red light" evidence=IMP
GO:0010218 "response to far red light" evidence=IMP
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP
GO:0016592 "mediator complex" evidence=IDA
GO:0009909 "regulation of flower development" evidence=IMP
GO:0009585 "red, far-red light phototransduction" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP
GO:0031349 "positive regulation of defense response" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IMP
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0003677 "DNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|F1N3D4 MED25 "Mediator of RNA polymerase II transcription subunit 25" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE44 MED25 "Mediator of RNA polymerase II transcription subunit 25" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHT9 MED25 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1922863 Med25 "mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q71SY5 MED25 "Mediator of RNA polymerase II transcription subunit 25" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2850 med25 "mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00019435 K06A9.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0038760 MED25 "Mediator complex subunit 25" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAPB1E7.04c SPAPB1E7.04c "chitinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XYY2MED25_ARATHNo assigned EC number0.62620.91760.6794yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X001175
hypothetical protein (796 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
pfam11265226 pfam11265, Med25_VWA, Mediator complex subunit 25 1e-69
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.004
>gnl|CDD|221051 pfam11265, Med25_VWA, Mediator complex subunit 25 von Willebrand factor type A Back     alignment and domain information 
 Score =  224 bits (573), Expect = 1e-69
 Identities = 77/230 (33%), Positives = 109/230 (47%), Gaps = 20/230 (8%)

Query: 3   EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASN--VELSLVTFNTH 60
              ++  +EGTA +GPY++++ ++Y+  II  F     A           + SLV FNT 
Sbjct: 13  VADVVFVIEGTANLGPYFETLKTNYILPIIEYFNGGPPAETDFGGEYGGTQYSLVVFNTV 72

Query: 61  GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQN 119
            S     VQ  G T+DVD FLHWL +I F GGG    + IAEGL+EAL +F       Q 
Sbjct: 73  ASAPESYVQCHGPTRDVDEFLHWLDSIQFMGGGGESCSLIAEGLAEALQLFDDFSEMRQQ 132

Query: 120 QQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC 179
               D  RHCIL+  S P+ LPT                 A  E + SD         + 
Sbjct: 133 IGQTDLHRHCILICNSPPYLLPT--------------VESASYEGKTSDQLAAI--IYER 176

Query: 180 SVSLSVICPKQLPKLTAIYNAAKRN-PRAADPPVDNSKNPHFLVLISENF 228
            + LS+I P++LP L  ++  AK +        +D +KNP  +VL+   F
Sbjct: 177 GIHLSIIAPRKLPALRLLFEKAKPDQQLPMKSSIDYAKNPFHMVLLRGIF 226

The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex. Length = 226
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 619
PF11265226 Med25_VWA: Mediator complex subunit 25 von Willebr 100.0
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 99.11
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 99.11
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 99.02
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 99.01
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 99.0
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.98
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 98.94
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 98.81
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.8
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 98.78
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 98.76
PF00092178 VWA: von Willebrand factor type A domain; InterPro 98.69
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 98.68
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 98.67
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.67
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 98.65
smart00187423 INB Integrin beta subunits (N-terminal portion of 98.55
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 98.45
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.45
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 98.35
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.35
cd01470198 vWA_complement_factors Complement factors B and C2 98.32
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.28
PF13768155 VWA_3: von Willebrand factor type A domain 98.26
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.22
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 98.19
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 98.16
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.16
PRK13685326 hypothetical protein; Provisional 98.12
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 98.11
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.06
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.05
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.04
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 98.02
PRK13406584 bchD magnesium chelatase subunit D; Provisional 98.01
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 97.96
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.94
PF00362426 Integrin_beta: Integrin, beta chain; InterPro: IPR 97.9
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 97.82
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.61
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 97.22
TIGR00868863 hCaCC calcium-activated chloride channel protein 1 97.2
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 97.05
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 97.02
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 96.77
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 96.62
COG4245207 TerY Uncharacterized protein encoded in toxicity p 96.3
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 96.28
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 96.25
TIGR00578584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 94.97
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 93.3
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 92.54
PF05762222 VWA_CoxE: VWA domain containing CoxE-like protein; 92.03
PRK10997487 yieM hypothetical protein; Provisional 90.84
KOG1226783 consensus Integrin beta subunit (N-terminal portio 90.29
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 90.27
PF11235168 Med25_SD1: Mediator complex subunit 25 synapsin 1; 88.73
KOG2884259 consensus 26S proteasome regulatory complex, subun 82.97
KOG2807378 consensus RNA polymerase II transcription initiati 82.67
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 81.03
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 80.07
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells Back     alignment and domain information 
Probab=100.00  E-value=5.6e-69  Score=529.56  Aligned_cols=210  Identities=43%  Similarity=0.701  Sum_probs=194.6

Q ss_pred             cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCC--CcceEEEEEeecCCCccccceeeccCCcCHHHH
Q 007065            3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSA--SNVELSLVTFNTHGSYCACLVQRSGWTKDVDIF   80 (619)
Q Consensus         3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~--~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~F   80 (619)
                      ++|||||||+||+||+||++||+|||+|+||||++|++.|+++++  .+++||||+||+||||++++|++++||+|+++|
T Consensus        13 ~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~~f   92 (226)
T PF11265_consen   13 QAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQKF   92 (226)
T ss_pred             cceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHHHH
Confidence            689999999999999999999999999999999999999999743  779999999999999999999999999999999


Q ss_pred             HHHhcCcccCCCCCc-hhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCCcccCccccccccchhh
Q 007065           81 LHWLSTIPFAGGGFN-DAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE  159 (619)
Q Consensus        81 lqwLdsI~FsGGGfs-paAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtpVY~P~~~~~~~ge~~~  159 (619)
                      ++|||+|+|.|||++ +++|+|||++||+|||+++..|+..++.+.|||||||||||||++|+...              
T Consensus        93 l~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~--------------  158 (226)
T PF11265_consen   93 LQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNEC--------------  158 (226)
T ss_pred             HHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCC--------------
Confidence            999999999999987 56699999999999998887777777778999999999999999997321              


Q ss_pred             hhhcccCCCHHHHHHHhhhCCcEEEEeCCCcchHHHHHHHHhcCCCCC-CCCCCCCCCCCceEEEecccc
Q 007065          160 AQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRA-ADPPVDNSKNPHFLVLISENF  228 (619)
Q Consensus       160 ~~~~s~laDaEqVAk~faEk~IsLSIIsPRklP~Lk~LFekak~n~~~-a~ps~dyAKdP~HLVLL~g~~  228 (619)
                        ...+..++|++|+++.||+|+||||||||+|+|++||||+++|+++ +++++||||||||||||||+|
T Consensus       159 --~~~~~~~~d~la~~~~~~~I~LSiisPrklP~l~~Lfeka~~~~~~~~~~~~~~ak~p~hlVLl~g~~  226 (226)
T PF11265_consen  159 --PQYSGKTCDQLAVLISERNISLSIISPRKLPSLRSLFEKAKGNPRAAADPSKDYAKDPRHLVLLRGYF  226 (226)
T ss_pred             --CcccCCCHHHHHHHHHhcCceEEEEcCccCHHHHHHHHhcCCCcccccccccccccCCCeEEEeecCC
Confidence              1123458999999999999999999999999999999999999998 699999999999999999986

Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information
>PF11235 Med25_SD1: Mediator complex subunit 25 synapsin 1; InterPro: IPR021397 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 99.64
3fcs_B690 Integrin beta-3; beta propeller, rossmann fold, EG 99.45
3t3p_B472 Integrin beta-3; integrin, cell adhesion, blood cl 99.41
3v4v_B503 Integrin beta-7; cell adhesion, madcam-1, membrane 99.38
3vi3_B454 Integrin beta-1; beta propeller fold, rossman fold 99.38
3k6s_B687 Integrin beta-2; cell receptor, adhesion molecule, 99.32
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 99.02
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 99.01
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 98.97
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 98.96
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 98.95
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 98.92
2b2x_A223 Integrin alpha-1; computational design, antibody-a 98.85
3ibs_A218 Conserved hypothetical protein BATB; structural ge 98.85
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 98.81
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 98.81
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.8
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 98.78
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 98.72
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 98.65
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 98.58
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 98.58
2odp_A509 Complement C2; C3/C5 convertase, complement serin 98.5
1rrk_A497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 98.48
3hrz_D741 Complement factor B; serine protease, glycosilated 98.48
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 98.38
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 98.33
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 98.33
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 98.2
4fx5_A464 VON willebrand factor type A; structural genomics, 98.12
3rag_A242 Uncharacterized protein; structural genomics, PSI- 97.93
1jey_B565 KU80; double-strand DNA break repair, non-homologo 97.85
1jey_A609 KU70; double-strand DNA break repair, non-homologo 97.6
2ww8_A893 RRGA, cell WALL surface anchor family protein; IGG 96.8
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 94.1
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 91.0
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 90.44
3eh1_A751 Protein transport protein SEC24B; copii coat prote 88.85
2nut_A769 Protein transport protein SEC23A; human copii SEC2 85.51
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 85.18
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 81.78
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
Probab=99.64  E-value=2.5e-15  Score=146.56  Aligned_cols=171  Identities=9%  Similarity=0.096  Sum_probs=126.7

Q ss_pred             cceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCccccceeeccCCcCHHHHHH
Q 007065            3 EKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLH   82 (619)
Q Consensus         3 ~~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~~Vqr~GfTsD~~~Flq   82 (619)
                      -.||+||+|.|+||++|++.+|+. +..+++.+..  +      ..++|+|++.|+|+     .|.....||+|.++|.+
T Consensus         3 pvDl~fl~D~S~SM~~di~~lk~~-~~~l~~~l~~--~------~~~~r~Gfg~f~Dk-----~~~~~l~lT~d~~~F~~   68 (212)
T 2iue_A            3 SVDLYFLMGLSGSAQGHLSNVQTL-GSDLLKALNE--I------SRSGRIGFGSIVNM-----TFQHILKLTADSSQFQR   68 (212)
T ss_dssp             CEEEEEEEECCGGGTTTHHHHHHH-HHHHHHHHHH--H------CSCEEEEEEEESSS-----CEEEEEEEESCHHHHHH
T ss_pred             ceEEEEEEeCCCcchhHHHHHHHH-HHHHHHHHHh--h------CcCceEEEEEEEcC-----cceecCCcCCCHHHHHH
Confidence            479999999999999999999977 6888888853  2      14689999999998     24456789999999999


Q ss_pred             HhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCCCCCC----cccCcccc--ccccc
Q 007065           83 WLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP----VYRPQMQN--LDQNE  156 (619)
Q Consensus        83 wLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhpLPtp----VY~P~~~~--~~~ge  156 (619)
                      +++++..+||+|.||+..+||..|+.|.+.+ .||      +..|.+||++|++||.....    .+.|....  ++.| 
T Consensus        69 ~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i-~Wr------~a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g-  140 (212)
T 2iue_A           69 ELRKQLVSGKLATPKGQLDAVVQVAICLGEI-GWR------NGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDG-  140 (212)
T ss_dssp             HHHTCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC------SSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSS-
T ss_pred             HHhhccccCCCCCCchHHHHHHHHHHhhhhc-ccC------CccEEEEEECcCCccccCCccccccccCCccccccCCC-
Confidence            9999999999999999999999999875411 112      26799999999999997542    11221110  1111 


Q ss_pred             hhhhh--hcccCCCHHHHHHHhhhCCcEEEEeCCC-cchHHHHH
Q 007065          157 NNEAQ--AESRLSDAETVAKSFVQCSVSLSVICPK-QLPKLTAI  197 (619)
Q Consensus       157 ~~~~~--~~s~laDaEqVAk~faEk~IsLSIIsPR-klP~Lk~L  197 (619)
                        .|.  +..+...++|+.+.+.|++|.+.+..++ ....+++|
T Consensus       141 --~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~~~~Y~~l  182 (212)
T 2iue_A          141 --MYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRMVKTYEKL  182 (212)
T ss_dssp             --BBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHHHHHHHHH
T ss_pred             --eeccCcccCCCCHHHHHHHHHhcCCcEEEEEccchhHHHHHH
Confidence              121  1235568899999999999997555444 33334443
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Back     alignment and structure
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 99.77
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 99.09
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 99.08
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 99.01
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.99
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 98.96
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 98.93
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 98.9
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 98.76
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 98.54
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 98.35
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.81
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 95.86
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 95.73
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 94.25
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin beta A domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.1e-18  Score=162.72  Aligned_cols=182  Identities=9%  Similarity=-0.008  Sum_probs=128.7

Q ss_pred             ceEEEEEecccccchhHHHHHHHHHHHHHHHhhcccccCccCCCCcceEEEEEeecCCCcccc-----------------
Q 007065            4 KQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCAC-----------------   66 (619)
Q Consensus         4 ~DIVFVIDgTASMGpYi~~LktnYI~PiLEyF~~g~l~e~~~g~~s~eyGLVvYrd~~Py~e~-----------------   66 (619)
                      .|||||||+|+||++||+.+|+. +..+++.+..-        ....|+|++.|+|+..-+..                 
T Consensus         6 vDl~Fv~D~TgSM~~~i~~vk~~-i~~i~~~l~~~--------~~~~r~g~~~f~D~~~~p~~~~~~~~~~~~p~~~~~~   76 (248)
T d1tyeb2           6 VDIYYLMDLSYSMKDDLWSIQNL-GTKLATQMRKL--------TSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKT   76 (248)
T ss_dssp             EEEEEEEECSGGGGGGHHHHHHH-HHHHHHHHHHH--------CSCEEEEEEEECCCSSTTTSCCCSGGGGTCGGGGGTS
T ss_pred             eeEEEEEECCcCHHHHHHHHHHH-HHHHHHHHHhh--------CcCceEEEEEEEecccCccccccchhhccCccccccc
Confidence            69999999999999999999987 68898888641        14689999999998632211                 


Q ss_pred             -------ceeeccCCcCHHHHHHHhcCcccCCCCCchhhHHHHHHHHHhccccCCCCCCCCCCCCcccEEEEeecCCCCC
Q 007065           67 -------LVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP  139 (619)
Q Consensus        67 -------~Vqr~GfTsD~~~FlqwLdsI~FsGGGfspaAVAEGLAeAL~~fd~~~~~~q~~~~~~~qKhCILI~nSPPhp  139 (619)
                             +-...+||+|+++|.++|+++...||||.+|++.+||..|+.|.+.+ .++     .+..|.+|||+|+|||.
T Consensus        77 ~~~~~f~~~~~~~~t~d~~~f~~~l~~~~~~GggD~pE~~~~Al~~a~~~~~~i-~Wr-----~~a~r~viliTDA~~H~  150 (248)
T d1tyeb2          77 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKI-GWR-----NDASHLLVFTTDAKTHI  150 (248)
T ss_dssp             CCCCCCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHH-TCC-----TTSEEEEEEEESSCBCC
T ss_pred             cccccccceecCCCCCCHHHHHHHHhheecccCCCCcchHHHHHHHHHHHhhhC-CCC-----CCccEEEEEECCCCccc
Confidence                   11235789999999999999999999999999999999998653222 112     24678999999999997


Q ss_pred             CCCCc----ccCccccc---cccchhhhhhcccCCCHHHHHHHhhhCCcEEEEe-CCCcchHHHHHHHHh
Q 007065          140 LPTPV----YRPQMQNL---DQNENNEAQAESRLSDAETVAKSFVQCSVSLSVI-CPKQLPKLTAIYNAA  201 (619)
Q Consensus       140 LPtpV----Y~P~~~~~---~~ge~~~~~~~s~laDaEqVAk~faEk~IsLSII-sPRklP~Lk~LFeka  201 (619)
                      ...--    -.|.....   ..+.-.+ ....+...++++++.+.|++|.+.++ ..+....+++|-+.-
T Consensus       151 ~~d~~l~g~~~~~d~~~~~~~~~~~~~-~~~~dyps~~ql~~~l~~~~i~~ifavt~~~~~~Y~~l~~~~  219 (248)
T d1tyeb2         151 ALDGRLAGIVQPNDGQCHVGSDNHYSA-STTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI  219 (248)
T ss_dssp             TTGGGGGTCCSCCCCCCCBCTTSBBGG-GGTSCCCCHHHHHHHHHHTTEEEEEEECGGGHHHHHHHHHTS
T ss_pred             ccccccccccccCCCccccCCCCcccc-cccccCCCHHHHHHHHHHhCcEEEEEECchhhHHHHHHHHhc
Confidence            55300    00000000   0111111 11223335799999999999996544 556577777777654
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure