Citrus Sinensis ID: 007072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
Protein Sequence
MSSNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRKIN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEEEEcccccEEEEEEccccccccccEEEEEEEEEEEcHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHcccccccEEEcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccccHHHHHcccHHHHHHccccccccccccHHHHHHHHHHHHHHHEEEcccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcHHHHHHHcccccEEEccccccccEEEEcccccHHHHHHHccccccEEcccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEEcccccccccEEEEEcccEEcHHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHccccccHHHEEccHHHHHcccccccEEEEEEHHccccHHHHHccccccccccEEEEEccccccccHHHHHHHHHHcHccHEEEEccccHHHcccHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccccEEcHcHcccccEEEccccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHccccHHHccccHHHHHHcccccHHHHHccccccccccHHHHHHHHHHHHHHHccEEcccccccccccEEEEEcccccEEccccccccEEEEEEEccccccccEEEEEEEEEccccccccEccHHHHcccccHHHHHHHccccccccHHHHHHHHcccHHHccccccccccccccccccccccccccEEEEEcHHHHHHHcccccEEEEccHHHccEEEEEccHHHHHHHHHcccccEEEccccccHEEEHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mssnsnrieTYEDFVKVHGVLLaasglpqsLHRQLFQKLTtetfdagsyfkievcedgrqrrlvldsqsmpkesnvflvdhawtFRLSDAFSQLQEVPGLAQRMASLMCvdtdldtdieeVDAVKGvlhengtksnvEDILESEIhnatekgdgtvkwleledadigdDMLLSlnlsskfpdlqalslcgnkLETVEIIVQEVTKLKNLRALwlnnnpvlkkcdhcmedailqgcpkleiynsnftinfgewalgfcgevydkdnpsslclrdrplqsvtsldlsnrcihnlvnkafspaempslshlnirgnpleqNSVRELLEVLkgfpclqslgvdipgplgESAIEILESlptlctlngvTASKILEEGKHVIdsmlqprlpewsadqpLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELgsavrhsdepnfrvapflfmpegklssaVSFSILWpiqnvykrdectrdflygigedkqrsarltawfhtpqsyfINEYEKHCQKLQfkslsytptkssnteslhrsdgcasrvytdipyveefLTRTefvittepkdadiIWTSLqvdedmktatgitdqqyvnqfpFESCLVMKHHLAETVQKVRKIN
Flexible Loop (DISEMBL)
mssnsnriETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLvldsqsmpkESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVkgvlhengtksnvedILESEihnatekgdgtvKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQsvtsldlsnrCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTkssnteslhrsdgcasrvytdIPYVEEFLTRTefvittepkdadIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRKIN
Low Complexity Region (SEG)
MSSNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRKIN
Disordered region (IsUnstruct)
********ETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVL********SNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENG****VEDILE*EIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS*********LNI******QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLS****************GCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETV*******
Disordered Region (DISOPRED)
**********YEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVID*****************DRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQF***********************SRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRK**
Disordered Region (DISEMBL)
********ETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSY***************GCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRKIN
Disordered Region (DISPRO)
*****NRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRKIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	619	2.2.26 [Sep-21-2011]
Q3UDE2	639	Tubulin--tyrosine ligase-	yes	no	0.324	0.314	0.326	3e-24
Q14166	644	Tubulin--tyrosine ligase-	yes	no	0.324	0.312	0.304	9e-22
Q09512	662	Tubulin--tyrosine ligase-	yes	no	0.345	0.323	0.284	2e-17
A8XXC0	672	Tubulin--tyrosine ligase-	N/A	no	0.392	0.361	0.251	8e-14

>sp|Q3UDE2|TTL12_MOUSE Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=1 SV=1

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 29/230 (12%)

Query: 398 VLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSA 457
           VL  MW +  TY+LA+    ++  VWY+MDE GS ++HSD P+F  APF +MP+      
Sbjct: 161 VLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHSDMPSFATAPFFYMPQ-----Q 215

Query: 458 VSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAW---------FHTPQ---SYFI 505
           V++++LWP++++   +E TRDF YG  +   R   L  W         F TP+    Y+ 
Sbjct: 216 VAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWAPADMLDLSFSTPEPPAKYYQ 275

Query: 506 NEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEP 565
              E++ +KL    L+ +P          R  G   RV+ D+  V   LT   F  T   
Sbjct: 276 AILEENKEKL---PLAISPVA--------RPQGHVFRVHCDVQQVLGHLTHPRFTFTDSE 324

Query: 566 KDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKV 615
            DADI +      + MK +   + Q  +NQFP E+ L +K  LA   ++ 
Sbjct: 325 ADADIFFHFSHFKDYMKLSQE-SPQVLLNQFPCENLLTVKDCLASIARRA 373

Mus musculus (taxid: 10090)

>sp|Q14166|TTL12_HUMAN Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2

 Score =  105 bits (263), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 29/230 (12%)

Query: 398 VLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSA 457
           VL  MW +  TY+LA+    ++  VWY+MDE GS ++H+D P+F  APF +MP+      
Sbjct: 166 VLEEMWKFNQTYQLAHGTAEEKMPVWYIMDEFGSRIQHADVPSFATAPFFYMPQ-----Q 220

Query: 458 VSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHT------------PQSYFI 505
           V++++LWP++++   +E TRDF YG  +   R   L  W  T            P  ++ 
Sbjct: 221 VAYTLLWPLRDLDTGEEVTRDFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQ 280

Query: 506 NEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEP 565
              E++ +KL    L   P    +        G   +VYTD+  V   LT   F +T   
Sbjct: 281 AILEENKEKL---PLDINPVVHPH--------GHIFKVYTDVQQVASSLTHPRFTLTQSE 329

Query: 566 KDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKV 615
            DADI++      +D +  +       +NQFP E+ L +K  LA   ++ 
Sbjct: 330 ADADILFNFSHF-KDYRKLSQERPGVLLNQFPCENLLTVKDCLASIARRA 378

Homo sapiens (taxid: 9606)

>sp|Q09512|TTL12_CAEEL Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans GN=ttll-12 PE=4 SV=1

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 117/250 (46%), Gaps = 36/250 (14%)

Query: 384 RLPEWSADQP---LADRVLSAMWLYLMTYRLA---NEEKIDETSVWYVMDELGSAVRHSD 437
           RL  +S D P   L ++VL A+W Y  TY ++   +  +I++ SVWYVMD+ G+ VRHS 
Sbjct: 159 RLSSYSVDDPKNELTEKVLKALWKYSQTYSVSYQLDNGEIEKKSVWYVMDDFGTRVRHST 218

Query: 438 EPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWF 497
           EPN R+ P +F+P+       ++SI++  + V   +E   D+   +      +A+   W 
Sbjct: 219 EPNVRIVPLMFLPQN-----CAYSIMFLTKPVNTDEEIMMDWASNVI-----TAQHPEWR 268

Query: 498 -HTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLH---RSDGCASRVYTDIPYVE-- 551
            +  Q +   ++ K        +L Y  T   N + L        C S ++T +P ++  
Sbjct: 269 KYIEQPWAAQDFSKETMIPDAPTLEYF-TSGRNPDFLAGPTEQQTCQSAIFTSLPILKKR 327

Query: 552 ------------EFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFE 599
                       E L   +     + K AD+IW  ++   D K  +       +NQFPFE
Sbjct: 328 KIKVYADDTQLTEHLKNHKVEYVDDIKKADVIWM-IKHFHDYKQLSEENPCGMINQFPFE 386

Query: 600 SCLVMKHHLA 609
           SC+ +K  LA
Sbjct: 387 SCITVKDLLA 396

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A8XXC0|TTL12_CAEBR Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis briggsae GN=ttll-12 PE=4 SV=2

 Score = 79.3 bits (194), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 51/294 (17%)

Query: 350 EILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQP---LADRVLSAMW--- 403
           E +E + T C       ++ L E        +  RL  +S D P   + +RV+  +W   
Sbjct: 128 ETVEKIETSCEKEEEEHARRLSEPGLPRHESVDARLSSYSVDDPKKTMTERVMRNLWKFA 187

Query: 404 -LYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSI 462
             Y ++Y+L N E +++  VWYVMD+ GS +RHS  PN R+ P +F+P+       ++SI
Sbjct: 188 QTYTVSYQLENGE-MEKKHVWYVMDDFGSRIRHSGCPNVRIVPLMFLPQN-----CAYSI 241

Query: 463 LWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQS-----------------YFI 505
           ++  + V   DE T D+   +   K    R   +   P +                 YF 
Sbjct: 242 MFLTKPVKIDDEITMDWAANVITAKNPEWR--QYLEMPWAEKDFSSESMVPGPPTLEYFT 299

Query: 506 N----------EYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLT 555
           +          + +K C+   F +LS    +      L        +++ D   + E L 
Sbjct: 300 SGRNPDFLADEKDKKTCESAIFSALSVLKKQGKIKIFL--------QIFADDTQLTEHLK 351

Query: 556 RTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLA 609
             +     + K AD+IW  ++   D            +NQFPFESC+ +K  LA
Sbjct: 352 SRQIEYVDDWKAADVIWM-IKHFHDYSNLAQENPCAQINQFPFESCITVKDLLA 404

Caenorhabditis briggsae (taxid: 6238)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	619
224068448	868	predicted protein [Populus trichocarpa]	0.982	0.700	0.757	0.0
359484270	866	PREDICTED: tubulin--tyrosine ligase-like	0.980	0.700	0.738	0.0
147856096	870	hypothetical protein VITISV_006435 [Viti	0.987	0.702	0.738	0.0
255550449	851	protein binding protein, putative [Ricin	0.959	0.698	0.721	0.0
356556388	874	PREDICTED: tubulin--tyrosine ligase-like	0.983	0.696	0.685	0.0
449452568	875	PREDICTED: tubulin--tyrosine ligase-like	0.990	0.700	0.676	0.0
449500492	875	PREDICTED: LOW QUALITY PROTEIN: tubulin-	0.990	0.700	0.674	0.0
356556390	855	PREDICTED: tubulin--tyrosine ligase-like	0.953	0.690	0.662	0.0
297842531	854	predicted protein [Arabidopsis lyrata su	0.957	0.694	0.661	0.0
79383745	855	tubulin-tyrosine ligase [Arabidopsis tha	0.961	0.695	0.653	0.0

>gi|224068448|ref|XP_002326123.1| predicted protein [Populus trichocarpa] gi|222833316|gb|EEE71793.1| predicted protein [Populus trichocarpa]

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/610 (75%), Positives = 529/610 (86%), Gaps = 2/610 (0%)

Query: 7   RIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLD 66
           +I+ YEDFVKVHG+LLAASGLP++LHR+LF KLT+ETFD G+YF+++ C+DGRQRRL+L 
Sbjct: 3   KIQAYEDFVKVHGILLAASGLPRTLHRKLFDKLTSETFDGGAYFQVDPCQDGRQRRLLLT 62

Query: 67  SQ-SMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVK 125
           S  SMPK+SNVFL+DHAWTFRLSDA+ QLQEVPGLAQRMA+LMCVD D ++D+EE+D   
Sbjct: 63  SAASMPKDSNVFLIDHAWTFRLSDAYKQLQEVPGLAQRMAALMCVDIDSNSDVEEIDG-D 121

Query: 126 GVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQA 185
           GV  +  +K NV DI+E+EI  A E+G  TVKWLELE+ DI DDMLLSL+LSSKFPDL A
Sbjct: 122 GVSRDTYSKLNVTDIVENEIGYAKERGYDTVKWLELEELDIDDDMLLSLDLSSKFPDLLA 181

Query: 186 LSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNF 245
           LSLCGNKLE VEI+VQEVTKLKNL+ALWLNNNPVL+ CD CM D I +GCP LEIYNS F
Sbjct: 182 LSLCGNKLENVEIVVQEVTKLKNLKALWLNNNPVLENCDGCMADTIFKGCPGLEIYNSCF 241

Query: 246 TINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL 305
           T NFGEWALGFCG VY+KDNP  +   + PLQSVTSLDLSNR IH+L+NKAFSP EMPSL
Sbjct: 242 TSNFGEWALGFCGGVYEKDNPCPIHQDNHPLQSVTSLDLSNRSIHSLINKAFSPVEMPSL 301

Query: 306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVT 365
           SHLNIRGNPL+QNSV EL +VLKGF  LQ+L VD+PGPLGESAIEILES+P L  LNGV 
Sbjct: 302 SHLNIRGNPLKQNSVSELFKVLKGFTSLQTLEVDLPGPLGESAIEILESVPNLSQLNGVN 361

Query: 366 ASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYV 425
            SKILE G HVID++LQPRLPEW+A++PLADRV++AMWLYLMTYRLA+EEKIDETSVWYV
Sbjct: 362 VSKILETGNHVIDAVLQPRLPEWTAEEPLADRVINAMWLYLMTYRLADEEKIDETSVWYV 421

Query: 426 MDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGE 485
           MDELGSA+RHSDEPNFRVAPFLFMPEG L SAVS+SILWPIQNV   DECTRDFL+GIGE
Sbjct: 422 MDELGSALRHSDEPNFRVAPFLFMPEGNLDSAVSYSILWPIQNVQNGDECTRDFLFGIGE 481

Query: 486 DKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYT 545
           DKQRSARLTA+FHTPQ YFI EYEK  QKLQ KS +  P KSS++ +L R+DGCA RVYT
Sbjct: 482 DKQRSARLTAYFHTPQYYFIQEYEKFHQKLQSKSSTPLPVKSSSSRTLRRTDGCALRVYT 541

Query: 546 DIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMK 605
           D+P VE FLTRTEF+ITTE KDADIIWT +QVD+D+K A GITDQQY+NQFPFE+CLVMK
Sbjct: 542 DLPQVEGFLTRTEFIITTELKDADIIWTGMQVDDDVKRAAGITDQQYINQFPFEACLVMK 601

Query: 606 HHLAETVQKV 615
           HHLAET+QK 
Sbjct: 602 HHLAETIQKA 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484270|ref|XP_002278055.2| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Vitis vinifera] gi|297738564|emb|CBI27809.3| unnamed protein product [Vitis vinifera]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/611 (73%), Positives = 515/611 (84%), Gaps = 4/611 (0%)

Query: 5   SNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLV 64
           ++RIE +EDFVKVH +LL ASGLP SLHRQLFQKL +ETFD+G +F+++ CE+GRQRRLV
Sbjct: 3   ADRIENFEDFVKVHALLLQASGLPPSLHRQLFQKLYSETFDSGDFFQVQPCENGRQRRLV 62

Query: 65  LDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAV 124
           L S+ M KES+VFL+DHAWTFRLSDA  QLQEVPGLA+RMASLMCVD D+D++ EE DAV
Sbjct: 63  LTSEFMEKESHVFLIDHAWTFRLSDAPKQLQEVPGLAERMASLMCVDIDMDSNSEETDAV 122

Query: 125 KGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQ 184
            G   E  TK +V      EI  A EKGDG V+WLEL++  I DDMLLS +LSSKFP+L 
Sbjct: 123 NGGSDEKDTKLDVG----REISEAEEKGDGIVRWLELDELGIDDDMLLSFDLSSKFPNLL 178

Query: 185 ALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSN 244
           ALSLCGNKLE VEI++QE+ K K+LRALWLN+NP+L+ CD  M + ILQG P LEIYNS 
Sbjct: 179 ALSLCGNKLENVEIVIQEIIKFKHLRALWLNDNPLLQNCDGHMAERILQGSPSLEIYNSC 238

Query: 245 FTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304
           FT NFGEWALGFC +VY K+NP  +   D PLQSVTSLDLSNRCIHNL++KAFSP EMPS
Sbjct: 239 FTRNFGEWALGFCADVYGKENPGYIHQNDHPLQSVTSLDLSNRCIHNLISKAFSPVEMPS 298

Query: 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGV 364
           LS+LN+RGNPLEQNSV +LL++LKGF CL +L VDIPGPLGESA+EILESLP+L  LNGV
Sbjct: 299 LSYLNLRGNPLEQNSVSDLLKILKGFACLNALEVDIPGPLGESAVEILESLPSLSQLNGV 358

Query: 365 TASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWY 424
            ASKILE GKHVIDSMLQPRLPEWS ++PL+DRVLSAMWLYLMTYRLA+EEKIDETSV Y
Sbjct: 359 NASKILETGKHVIDSMLQPRLPEWSPEEPLSDRVLSAMWLYLMTYRLADEEKIDETSVCY 418

Query: 425 VMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG 484
           VMDELGSA+RHSDEP+FRV+PFL+MPEGKL+SAVSFSILWP QNV K DECTRDFL+GIG
Sbjct: 419 VMDELGSALRHSDEPSFRVSPFLYMPEGKLASAVSFSILWPTQNVQKGDECTRDFLFGIG 478

Query: 485 EDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVY 544
           EDKQRSARLTAWFHTPQ+YFI+EYEKHCQKLQ K       K S       S G A RVY
Sbjct: 479 EDKQRSARLTAWFHTPQNYFIHEYEKHCQKLQSKCCLSPSIKPSTDRCSISSGGHALRVY 538

Query: 545 TDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVM 604
           TDIP VEEFLTR EF+ITT+PKDADIIWTS+Q+DED + A GITDQQY+NQFPFE+CLVM
Sbjct: 539 TDIPQVEEFLTRPEFLITTDPKDADIIWTSMQIDEDTRKAAGITDQQYINQFPFEACLVM 598

Query: 605 KHHLAETVQKV 615
           KHHLAETVQK 
Sbjct: 599 KHHLAETVQKA 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856096|emb|CAN82450.1| hypothetical protein VITISV_006435 [Vitis vinifera]

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/611 (73%), Positives = 516/611 (84%)

Query: 5   SNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLV 64
           ++RIE +EDFVKVH +LL ASGLP SLHRQLFQKL +ETFD+G +F+++ CE+GRQRRLV
Sbjct: 3   ADRIENFEDFVKVHALLLQASGLPPSLHRQLFQKLYSETFDSGDFFQVQPCENGRQRRLV 62

Query: 65  LDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAV 124
           L S+ M KES+VFL+DHAWTFRLSDA  QLQEVPGLA+RMASLMCVD D+D++ EE DAV
Sbjct: 63  LTSEFMEKESHVFLIDHAWTFRLSDAPKQLQEVPGLAERMASLMCVDIDMDSNSEETDAV 122

Query: 125 KGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQ 184
            G   E  TK +V  +L  EI  A EKGDG V+WLEL++  I DDMLLS +LSSKFP+L 
Sbjct: 123 NGGSDEKDTKLDVMRMLGREISEAEEKGDGIVRWLELDELGIDDDMLLSXDLSSKFPNLL 182

Query: 185 ALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSN 244
           ALSLCGNKLE VEI++QE+ K K+LRALWLN+NP+L+ CD  M + ILQG P LEIYNS 
Sbjct: 183 ALSLCGNKLENVEIVIQEIIKFKHLRALWLNDNPLLQNCDGHMAERILQGSPSLEIYNSC 242

Query: 245 FTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304
           FT NFGEWALGFC +VY K+NP  +   D PLQSVTSLDLSNRCIHNL++KAFSP EMPS
Sbjct: 243 FTXNFGEWALGFCADVYGKENPGYIHQNDHPLQSVTSLDLSNRCIHNLISKAFSPVEMPS 302

Query: 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGV 364
           LS+LN+RGNPLEQNSV +LL++LKGF CL +L VDIPGPLGESA+EILESLP+L  LNGV
Sbjct: 303 LSYLNLRGNPLEQNSVSDLLKILKGFACLNALEVDIPGPLGESAVEILESLPSLSQLNGV 362

Query: 365 TASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWY 424
            ASKILE GKHVIDSMLQP LPEWS ++PL+DRVLSAMWLYLMTYRLA+EEKIDETSV Y
Sbjct: 363 NASKILETGKHVIDSMLQPXLPEWSPEEPLSDRVLSAMWLYLMTYRLADEEKIDETSVCY 422

Query: 425 VMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG 484
           VMDELGSA+RHSDEP+FRV+PFL+MPEGKL+SAVSFSILWP QNV K DECTRDFL+GIG
Sbjct: 423 VMDELGSALRHSDEPSFRVSPFLYMPEGKLASAVSFSILWPTQNVQKGDECTRDFLFGIG 482

Query: 485 EDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVY 544
           EDKQRSARLTAWFHTPQ+YFI+EYEKHCQKLQ K       K S       S G A RVY
Sbjct: 483 EDKQRSARLTAWFHTPQNYFIHEYEKHCQKLQSKCCLSPSIKPSTDRCSISSGGHALRVY 542

Query: 545 TDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVM 604
           TDIP VEEFLTR EF+ITT+PKDADIIWTS+Q+DED + A GITDQQY+NQFPFE+CLVM
Sbjct: 543 TDIPQVEEFLTRPEFLITTDPKDADIIWTSMQIDEDTRKAAGITDQQYINQFPFEACLVM 602

Query: 605 KHHLAETVQKV 615
           KHHLAETVQK 
Sbjct: 603 KHHLAETVQKA 613

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550449|ref|XP_002516275.1| protein binding protein, putative [Ricinus communis] gi|223544761|gb|EEF46277.1| protein binding protein, putative [Ricinus communis]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/615 (72%), Positives = 507/615 (82%), Gaps = 21/615 (3%)

Query: 1   MSSNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQ 60
           M++   RIETY+DFVKVHG+LLAASGLPQSLH +LF+KLT+E FD G+YF+IE CED RQ
Sbjct: 1   MTATVARIETYDDFVKVHGLLLAASGLPQSLHYKLFEKLTSEAFDGGAYFQIEPCEDSRQ 60

Query: 61  RRLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEE 120
           RRL+  S SMP ESNVFLVDHAWTFRLSDA++QLQEVPGLA+RMASLMCVD DL++D+++
Sbjct: 61  RRLLFTSDSMPAESNVFLVDHAWTFRLSDAYTQLQEVPGLARRMASLMCVDIDLNSDVKD 120

Query: 121 VDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKF 180
            +   GV  EN  K NV D++E +I++A   G  TV+WLELE+ D+ DDMLLSL+LS KF
Sbjct: 121 GN---GVAEENNPKLNVLDVVEKDINDAKVTGFDTVRWLELEELDMDDDMLLSLDLSCKF 177

Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI 240
           PDL ALSLCGNKL   +IIVQEVTKLKNLRALWLNNNPVL+ CD  M +AI+QGCPKLEI
Sbjct: 178 PDLTALSLCGNKLVHADIIVQEVTKLKNLRALWLNNNPVLENCDGHMMNAIVQGCPKLEI 237

Query: 241 YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA 300
           YNS FT NFGEWALGFCG++YDKDNP  +   D   QSVTSLDLSNR I++L+NKAFSP 
Sbjct: 238 YNSRFTSNFGEWALGFCGDIYDKDNPGCISQSDSQFQSVTSLDLSNRYINSLINKAFSPV 297

Query: 301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCT 360
           EMP LSHLNIRGNPLEQNSV E L +L+GFPCLQSL VDIPGPLG+SA+EILESLP L  
Sbjct: 298 EMPLLSHLNIRGNPLEQNSVSESLALLEGFPCLQSLEVDIPGPLGDSAVEILESLPNLSL 357

Query: 361 LNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDET 420
           LNGV ASKILE G HVIDS L PRLPEW+AD+PLADRVL+AMWLYLM+YRLA+EEK+DET
Sbjct: 358 LNGVKASKILETGNHVIDSKLHPRLPEWAADEPLADRVLNAMWLYLMSYRLADEEKLDET 417

Query: 421 SVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL 480
           SVWYVMDELGSA+RHSDEPNFRVAPFLFMPEGKL SAVS+SILWPIQNV   DECTRDFL
Sbjct: 418 SVWYVMDELGSALRHSDEPNFRVAPFLFMPEGKLESAVSYSILWPIQNVQNGDECTRDFL 477

Query: 481 YGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCA 540
           +G GEDKQR   + +                  K+  ++L+  P KSS+T  L R DG  
Sbjct: 478 FGFGEDKQRVREILS------------------KIAIQNLTSLPVKSSSTRRLCRIDGRP 519

Query: 541 SRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFES 600
            RVYTDIP VEEFLTR EFVITTEPKDADIIWTS+QVD++MK ATGITD+QYVNQFPFE+
Sbjct: 520 LRVYTDIPPVEEFLTRHEFVITTEPKDADIIWTSMQVDDEMKRATGITDEQYVNQFPFEA 579

Query: 601 CLVMKHHLAETVQKV 615
           CLVMKHHLAETVQK 
Sbjct: 580 CLVMKHHLAETVQKA 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556388|ref|XP_003546508.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like isoform 1 [Glycine max]

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/614 (68%), Positives = 503/614 (81%), Gaps = 5/614 (0%)

Query: 2   SSNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQR 61
           ++ S +IETYE+F KVH +LLAASGLP+ LHR+LF+KL+ E FD G +F+IE CE+GRQR
Sbjct: 9   ATGSRKIETYEEFEKVHALLLAASGLPERLHRRLFEKLSCEHFDGGDHFQIEPCEEGRQR 68

Query: 62  RLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEV 121
           RLVL S SMP++S+VFLVDHAWTFRLSDA++QL +VPGLA+RM SLMCVD D+D  ++  
Sbjct: 69  RLVLTSASMPRDSDVFLVDHAWTFRLSDAYTQLSKVPGLAERMGSLMCVDVDVDVSLDAE 128

Query: 122 DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFP 181
           D       E   + +V + LESE+  A E GDGT++WLELE   I DDML+SL LS++FP
Sbjct: 129 DEA-----EVNDERDVVETLESEVREAKENGDGTLRWLELEGLHIDDDMLVSLALSTRFP 183

Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIY 241
           +L ALSL GNKL + E++ QE+ KLK+L+ +WLNNNPVLK CD  +E  IL+  P+LEIY
Sbjct: 184 ELVALSLLGNKLNSAEVVFQELIKLKHLKGIWLNNNPVLKNCDGELEQVILKELPELEIY 243

Query: 242 NSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301
           NS+ T NFGEWALGFC  +Y KDNP +    D  L +V++LDLSNR IHNL+ KAFSP  
Sbjct: 244 NSSLTGNFGEWALGFCAGLYGKDNPGNADQTDTLLHTVSTLDLSNRNIHNLIKKAFSPIC 303

Query: 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361
           +PSLS+LNIRGNPLEQNSV +LL++L+ FPCL+SL VDIPGPLG SAIEILESLP +  L
Sbjct: 304 LPSLSYLNIRGNPLEQNSVGDLLDLLRRFPCLRSLEVDIPGPLGGSAIEILESLPNISEL 363

Query: 362 NGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETS 421
           NG++ASKILE GKH+IDSML PRLPEW+ D+PLADR+++AMW YLMTYRLA+EEK+DETS
Sbjct: 364 NGISASKILETGKHIIDSMLLPRLPEWTPDEPLADRIINAMWQYLMTYRLADEEKLDETS 423

Query: 422 VWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY 481
           VWYVMDELGSA+RHSDEPNFRVAPFLFMPEG L+SAVSFSILWP QNV K DECTRDFL 
Sbjct: 424 VWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLASAVSFSILWPTQNVCKGDECTRDFLL 483

Query: 482 GIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCAS 541
           GIGEDKQRSARLTAWFHTP++YFI+ YEKH QKL   SL     +SS T S+H+  G   
Sbjct: 484 GIGEDKQRSARLTAWFHTPENYFIHAYEKHHQKLLSTSLMLPTFQSSETRSIHQPGGRPL 543

Query: 542 RVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESC 601
           RVYTDIP+VEE+LT  +F IT EPKDADIIWTS+QVDEDMK ATGITDQQY+NQFPFE+C
Sbjct: 544 RVYTDIPHVEEYLTHPKFAITKEPKDADIIWTSVQVDEDMKKATGITDQQYINQFPFEAC 603

Query: 602 LVMKHHLAETVQKV 615
           LVMKHHLAET+QK 
Sbjct: 604 LVMKHHLAETIQKA 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452568|ref|XP_004144031.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Cucumis sativus]

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/618 (67%), Positives = 502/618 (81%), Gaps = 5/618 (0%)

Query: 3   SNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRR 62
           +   RI+T+EDF KVHG+LL ASGLPQSLHRQLFQKLT+ETFD GS+F++E  EDGR RR
Sbjct: 2   AEGKRIQTFEDFFKVHGLLLTASGLPQSLHRQLFQKLTSETFDGGSHFQVEQFEDGRCRR 61

Query: 63  LVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVD 122
           LVL S  M KES+VF+VDHAWTFRLSDA+ QL EVPGLA+RMASLMCVD DL+   E+ D
Sbjct: 62  LVLSSDCMAKESHVFVVDHAWTFRLSDAYKQLLEVPGLAERMASLMCVDIDLNLAEEDED 121

Query: 123 AVKG----VLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSS 178
             K         +  K +V +++ESEI  A EKG+ +V+WLELED  I DD LLSL+L +
Sbjct: 122 HSKSNDDGDGDGDDAKQSVWELIESEIRGAKEKGNDSVRWLELEDLQIDDDALLSLDLPT 181

Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKL 238
           KFPDL ALSL GNKL+ V+++ +EV K K+LRALWLN+NPV + CD  ++  +L+  P L
Sbjct: 182 KFPDLLALSLTGNKLKDVDVVAREVAKFKHLRALWLNDNPVAENCDANLQQKVLEASPNL 241

Query: 239 EIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS 298
           EIYNS FT+NF +WALGFCG++Y KDNP S+   D  LQ +TSLDLS+RCIHNL+NKAFS
Sbjct: 242 EIYNSRFTLNFSKWALGFCGDMYGKDNPGSIYPSDHTLQCLTSLDLSSRCIHNLINKAFS 301

Query: 299 PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTL 358
           P E+PSLS+LN+RGNPLEQNSV +LL++LK FPCL SL VDIPGPLGE A +I+ESLP L
Sbjct: 302 PVELPSLSYLNLRGNPLEQNSVGDLLKILKEFPCLSSLEVDIPGPLGEKASDIIESLPNL 361

Query: 359 CTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKID 418
             LNG+  +KIL  GKHVIDSML PRLPEW+ ++ L DRV++AMW YLMTYRLA+EEKID
Sbjct: 362 SNLNGIDVAKILNSGKHVIDSMLLPRLPEWAPEETLPDRVINAMWQYLMTYRLADEEKID 421

Query: 419 ETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRD 478
           ETSVWYVMDELGSA+RHSDEPNFRVAPFLFMPEG L SA+SF+ILWPI NV K DECTRD
Sbjct: 422 ETSVWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLMSAISFTILWPIHNVQKGDECTRD 481

Query: 479 FLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTK-SSNTESLHRSD 537
           +L+GIGEDKQRSARLTAWFHTPQ+YF++EYEKH + LQ K L+   ++ +S TE L +S 
Sbjct: 482 YLFGIGEDKQRSARLTAWFHTPQNYFVHEYEKHIKNLQSKVLTSPISQTTSKTEELCQSK 541

Query: 538 GCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFP 597
           G   RVYTD P VEEFL R EF IT++PK+ADIIWTS+Q+DED + ATGITD+QYVNQFP
Sbjct: 542 GGTLRVYTDNPQVEEFLNRPEFTITSDPKEADIIWTSMQIDEDTRKATGITDKQYVNQFP 601

Query: 598 FESCLVMKHHLAETVQKV 615
           FE+CLVMKHHLAET++K 
Sbjct: 602 FEACLVMKHHLAETIEKA 619

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500492|ref|XP_004161112.1| PREDICTED: LOW QUALITY PROTEIN: tubulin--tyrosine ligase-like protein 12-like [Cucumis sativus]

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/618 (67%), Positives = 501/618 (81%), Gaps = 5/618 (0%)

Query: 3   SNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRR 62
           +   RI+T+EDF KVHG+LL ASGLPQSLHRQLFQKLT+ETFD GS+F++E  EDGR RR
Sbjct: 2   AEGKRIQTFEDFFKVHGLLLTASGLPQSLHRQLFQKLTSETFDGGSHFQVEQFEDGRCRR 61

Query: 63  LVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVD 122
           LVL S  M KES+VF+VDHAWTFRLSDA+ QL EVPGLA+RMASLMCVD DL+   E+ D
Sbjct: 62  LVLSSDCMAKESHVFVVDHAWTFRLSDAYKQLLEVPGLAERMASLMCVDIDLNLAEEDED 121

Query: 123 AVKG----VLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSS 178
             K         +  K +V +++ESEI  A  KG+ +V+WLELED  I DD LLSL+L +
Sbjct: 122 HSKSNDDGDGDGDDAKQSVWELIESEIRGAKXKGNDSVRWLELEDLQIDDDALLSLDLPT 181

Query: 179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKL 238
           KFPDL ALSL GNKL+ V+++ +EV K K+LRALWLN+NPV + CD  ++  +L+  P L
Sbjct: 182 KFPDLLALSLTGNKLKDVDVVAREVAKFKHLRALWLNDNPVAENCDANLQQKVLEASPNL 241

Query: 239 EIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS 298
           EIYNS FT+NF +WALGFCG++Y KDNP S+   D  LQ +TSLDLS+RCIHNL+NKAFS
Sbjct: 242 EIYNSRFTLNFSKWALGFCGDMYGKDNPGSIYPSDHTLQCLTSLDLSSRCIHNLINKAFS 301

Query: 299 PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTL 358
           P E+PSLS+LN+RGNPLEQNSV +LL++LK FPCL SL VDIPGPLGE A +I+ESLP L
Sbjct: 302 PVELPSLSYLNLRGNPLEQNSVGDLLKILKEFPCLSSLEVDIPGPLGEKASDIIESLPNL 361

Query: 359 CTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKID 418
             LNG+  +KIL  GKHVIDSML PRLPEW+ ++ L DRV++AMW YLMTYRLA+EEKID
Sbjct: 362 SNLNGIDVAKILNSGKHVIDSMLLPRLPEWAPEETLPDRVINAMWQYLMTYRLADEEKID 421

Query: 419 ETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRD 478
           ETSVWYVMDELGSA+RHSDEPNFRVAPFLFMPEG L SA+SF+ILWPI NV K DECTRD
Sbjct: 422 ETSVWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLMSAISFTILWPIHNVQKGDECTRD 481

Query: 479 FLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTK-SSNTESLHRSD 537
           +L+GIGEDKQRSARLTAWFHTPQ+YF++EYEKH + LQ K L+   ++ +S TE L +S 
Sbjct: 482 YLFGIGEDKQRSARLTAWFHTPQNYFVHEYEKHIKNLQSKVLTSPISQTTSKTEELCQSK 541

Query: 538 GCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFP 597
           G   RVYTD P VEEFL R EF IT++PK+ADIIWTS+Q+DED + ATGITD+QYVNQFP
Sbjct: 542 GGTLRVYTDNPQVEEFLNRPEFTITSDPKEADIIWTSMQIDEDTRKATGITDKQYVNQFP 601

Query: 598 FESCLVMKHHLAETVQKV 615
           FE+CLVMKHHLAET++K 
Sbjct: 602 FEACLVMKHHLAETIEKA 619

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556390|ref|XP_003546509.1| PREDICTED: tubulin--tyrosine ligase-like protein 12-like isoform 2 [Glycine max]

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/614 (66%), Positives = 486/614 (79%), Gaps = 24/614 (3%)

Query: 2   SSNSNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQR 61
           ++ S +IETYE+F KVH +LLAASGLP+ LHR+LF+KL+ E FD G +F+IE CE+GRQR
Sbjct: 9   ATGSRKIETYEEFEKVHALLLAASGLPERLHRRLFEKLSCEHFDGGDHFQIEPCEEGRQR 68

Query: 62  RLVLDSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEV 121
           RLVL S SMP++S+VFLVDHAWTFRLSDA++QL +VPGLA+RM SLMCVD D+D  ++  
Sbjct: 69  RLVLTSASMPRDSDVFLVDHAWTFRLSDAYTQLSKVPGLAERMGSLMCVDVDVDVSLDAE 128

Query: 122 DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFP 181
           D       E   + +V + LESE+  A E GDGT++WLELE   I DDML+SL LS++FP
Sbjct: 129 DEA-----EVNDERDVVETLESEVREAKENGDGTLRWLELEGLHIDDDMLVSLALSTRFP 183

Query: 182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIY 241
           +L ALSL GNKL + E++ QE+ KLK+L+ +WLNNNPVLK CD  +E  IL+  P+LEIY
Sbjct: 184 ELVALSLLGNKLNSAEVVFQELIKLKHLKGIWLNNNPVLKNCDGELEQVILKELPELEIY 243

Query: 242 NSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE 301
           NS+ T NFGEWALGFC  +Y KDNP +    D  L +V++LDLSNR IHNL+ KAFSP  
Sbjct: 244 NSSLTGNFGEWALGFCAGLYGKDNPGNADQTDTLLHTVSTLDLSNRNIHNLIKKAFSPIC 303

Query: 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL 361
           +PSLS+LNIRGNPLEQNSV +LL++L+ FPCL+SL VDIPGPLG SAIEILESLP +  L
Sbjct: 304 LPSLSYLNIRGNPLEQNSVGDLLDLLRRFPCLRSLEVDIPGPLGGSAIEILESLPNISEL 363

Query: 362 NGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETS 421
           NG++ASKILE GKH+IDSML PRLPEW+ D+PLADR+++AMW YLMTYRLA+EEK+DETS
Sbjct: 364 NGISASKILETGKHIIDSMLLPRLPEWTPDEPLADRIINAMWQYLMTYRLADEEKLDETS 423

Query: 422 VWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY 481
           VWYVMDELGSA+RHSDEPNFRVAPFLFMPEG L+SAVSFSILWP QNV K DECTRDFL 
Sbjct: 424 VWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLASAVSFSILWPTQNVCKGDECTRDFLL 483

Query: 482 GIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCAS 541
           GIGEDKQRSARLT                   KL   SL     +SS T S+H+  G   
Sbjct: 484 GIGEDKQRSARLT-------------------KLLSTSLMLPTFQSSETRSIHQPGGRPL 524

Query: 542 RVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESC 601
           RVYTDIP+VEE+LT  +F IT EPKDADIIWTS+QVDEDMK ATGITDQQY+NQFPFE+C
Sbjct: 525 RVYTDIPHVEEYLTHPKFAITKEPKDADIIWTSVQVDEDMKKATGITDQQYINQFPFEAC 584

Query: 602 LVMKHHLAETVQKV 615
           LVMKHHLAET+QK 
Sbjct: 585 LVMKHHLAETIQKA 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842531|ref|XP_002889147.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334988|gb|EFH65406.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/609 (66%), Positives = 490/609 (80%), Gaps = 16/609 (2%)

Query: 6   NRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVL 65
           ++IE+++DFVKVHG+LLAASGLP  L+ +LFQKL ++TFD G YF+IE  EDGR+RRL+L
Sbjct: 2   SKIESFDDFVKVHGILLAASGLPSKLYSRLFQKLASDTFDGGDYFQIESSEDGRRRRLLL 61

Query: 66  DSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVK 125
            SQSMPK+S+VFLVDHAWTFRL DA+ QL+E+PGLA+RMASLM VD D++T+ EE +   
Sbjct: 62  TSQSMPKDSDVFLVDHAWTFRLPDAYKQLKEIPGLAERMASLMSVDIDVETEEEEEEV-- 119

Query: 126 GVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQA 185
                     +V+ I+++EI  A +KG  +++WLELE   I DD LLSL+L S+F  L A
Sbjct: 120 ----------SVDQIIDNEIRYAADKGYDSLRWLELEGLGIVDDSLLSLHLPSQFQAL-A 168

Query: 186 LSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNF 245
           LSL GNK+E+V++++QEV K KNL+ALWLN+NPVL+K +  M D ILQGCP LEIYNS F
Sbjct: 169 LSLIGNKIESVDVVIQEVMKFKNLKALWLNDNPVLQKSERQMADEILQGCPSLEIYNSCF 228

Query: 246 TINFGEWALGFCGEVYDKDNPSSLCLR-DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304
           T N+G WALGFCG ++ KDNP+  C++ D+PL +VTSLDLSNR IH+LVNKAFS  EMP 
Sbjct: 229 TPNYGLWALGFCGNIFGKDNPA--CVQQDQPLSNVTSLDLSNRSIHSLVNKAFSVHEMPL 286

Query: 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGV 364
           LSHLNIRGNPL+QNSV E+LEVLK FP L SL VDIPGPLG +A+EIL SL  L  LNGV
Sbjct: 287 LSHLNIRGNPLDQNSVGEILEVLKLFPSLSSLEVDIPGPLGNNALEILASLSNLSLLNGV 346

Query: 365 TASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWY 424
             +KI E GKHVIDSMLQPR+PE + +  L DRVL AMWLY + YRLA+EEK+DETS+WY
Sbjct: 347 DTAKIFENGKHVIDSMLQPRIPELNPEGTLVDRVLDAMWLYALNYRLADEEKLDETSLWY 406

Query: 425 VMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG 484
           VMDELGSA+RHSDEPNF+VAPFLFMP GKL SAVS+S++WPI+N  K DECTRDFL GIG
Sbjct: 407 VMDELGSALRHSDEPNFKVAPFLFMPSGKLESAVSYSVMWPIKNSQKGDECTRDFLSGIG 466

Query: 485 EDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVY 544
           EDK RSARLTAWF TP++YFI+E+EK+ QKLQ K+    PT  S + S+  SDG    VY
Sbjct: 467 EDKHRSARLTAWFQTPENYFIHEFEKYQQKLQAKAFKSLPTNPSVSRSIRHSDGSPLLVY 526

Query: 545 TDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVM 604
           TD+P VEEFLTR EFVIT EPKDADI+WTS+QVDE++K   GITD QY+NQFPFE+CLVM
Sbjct: 527 TDLPQVEEFLTRPEFVITNEPKDADILWTSVQVDEELKKEVGITDDQYLNQFPFEACLVM 586

Query: 605 KHHLAETVQ 613
           KHHLAET+Q
Sbjct: 587 KHHLAETIQ 595

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79383745|ref|NP_177879.3| tubulin-tyrosine ligase [Arabidopsis thaliana] gi|47550675|gb|AAT35236.1| At1g77550 [Arabidopsis thaliana] gi|110741647|dbj|BAE98770.1| hypothetical protein [Arabidopsis thaliana] gi|332197871|gb|AEE35992.1| tubulin-tyrosine ligase [Arabidopsis thaliana]

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/609 (65%), Positives = 490/609 (80%), Gaps = 14/609 (2%)

Query: 6   NRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVL 65
           ++IE+++DFVKVHG+LLAASGLP  L+ +LF+KL  +TFD G YF+IE CED ++R+L+L
Sbjct: 2   SKIESFDDFVKVHGILLAASGLPPKLYPRLFEKLAYDTFDGGDYFQIESCEDDQRRKLLL 61

Query: 66  DSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVK 125
            ++SMPK+S+VFLVDHAWTFRL DA+ QL+E+PGLA+RMASLM VD D+D   EEV    
Sbjct: 62  TAESMPKDSDVFLVDHAWTFRLPDAYKQLKEIPGLAERMASLMSVDIDVDAGEEEV---- 117

Query: 126 GVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQA 185
                   + +V+ I+++EI  A +KG  +++WLELE   + DD LLSL+L SKF DL A
Sbjct: 118 ------AEELSVDQIIDNEIRYAADKGYDSLRWLELEGLGV-DDSLLSLHLPSKFQDLVA 170

Query: 186 LSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNF 245
           LSL GNK+E+ ++++QE+ K KNL+ALWLN+NPVL+K +  M D ILQGCP LEIYNS F
Sbjct: 171 LSLIGNKIESADVVIQEIVKFKNLKALWLNDNPVLQKSERQMADEILQGCPSLEIYNSCF 230

Query: 246 TINFGEWALGFCGEVYDKDNPSSLCLR-DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304
           T N+G WALGFCG+++ KDNP   C++ D+PL +VTSLDLSNR IHNLVNKAFS  EMP 
Sbjct: 231 TPNYGLWALGFCGDIFGKDNPG--CVQQDQPLCNVTSLDLSNRSIHNLVNKAFSVHEMPL 288

Query: 305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGV 364
           LSHLNIRGN L+QNSV ELLEVLK FP L SL VDIPGPLG +A+EILESL  L  LNGV
Sbjct: 289 LSHLNIRGNSLDQNSVGELLEVLKLFPSLSSLEVDIPGPLGINALEILESLSNLSLLNGV 348

Query: 365 TASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWY 424
             +KILE GKHV+DSMLQPR+PE + D  L DRVL AMWLY + YRLA++EK+DETS+WY
Sbjct: 349 DTAKILETGKHVVDSMLQPRIPELNPDDTLVDRVLDAMWLYALNYRLADDEKLDETSLWY 408

Query: 425 VMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG 484
           VMDELGSA+RHSDEPNF+VAPFLFMP GKL SAVS+S++WPI++  K DECTRDFL GIG
Sbjct: 409 VMDELGSALRHSDEPNFKVAPFLFMPSGKLESAVSYSVMWPIKHSQKGDECTRDFLSGIG 468

Query: 485 EDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVY 544
           EDKQRSARLTAWF TP++YFI+E+EK+ QKLQ K+    P+  S + S+  SDG    VY
Sbjct: 469 EDKQRSARLTAWFQTPENYFIHEFEKYQQKLQAKAFESKPSNPSVSRSIQHSDGSPLLVY 528

Query: 545 TDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVM 604
           TD+P VEEFLTR EFVIT EPKDADI+WTS+QVD+++K   GITD QY+NQFPFE+CLVM
Sbjct: 529 TDLPQVEEFLTRPEFVITNEPKDADILWTSVQVDDELKKEVGITDDQYINQFPFEACLVM 588

Query: 605 KHHLAETVQ 613
           KHHLAET+Q
Sbjct: 589 KHHLAETIQ 597

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	619
TAIR|locus:2204745	855	AT1G77550 [Arabidopsis thalian	0.961	0.695	0.653	6.6e-216
ZFIN|ZDB-GENE-040426-697	625	ttll12 "tubulin tyrosine ligas	0.340	0.337	0.327	2e-36
MGI|MGI:3039573	639	Ttll12 "tubulin tyrosine ligas	0.336	0.325	0.325	1e-35
UNIPROTKB|F1NZA1	627	TTLL12 "Uncharacterized protei	0.339	0.334	0.309	4.2e-35
FB|FBgn0033225	626	CG1550 [Drosophila melanogaste	0.345	0.341	0.293	8.3e-35
UNIPROTKB|F1N5K2	655	TTLL12 "Uncharacterized protei	0.353	0.334	0.310	1.9e-34
UNIPROTKB|F1PQD3	682	TTLL12 "Uncharacterized protei	0.353	0.321	0.310	2e-34
RGD|1305319	639	Ttll12 "tubulin tyrosine ligas	0.340	0.330	0.307	2.5e-34
UNIPROTKB|Q14166	644	TTLL12 "Tubulin--tyrosine liga	0.336	0.322	0.312	3.5e-34
WB|WBGene00008405	662	ttll-12 [Caenorhabditis elegan	0.447	0.418	0.278	3.5e-30

TAIR|locus:2204745 AT1G77550 [Arabidopsis thaliana (taxid:3702)]

 Score = 2086 (739.4 bits), Expect = 6.6e-216, P = 6.6e-216
 Identities = 398/609 (65%), Positives = 490/609 (80%)

Query:     6 NRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVL 65
             ++IE+++DFVKVHG+LLAASGLP  L+ +LF+KL  +TFD G YF+IE CED ++R+L+L
Sbjct:     2 SKIESFDDFVKVHGILLAASGLPPKLYPRLFEKLAYDTFDGGDYFQIESCEDDQRRKLLL 61

Query:    66 DSQSMPKESNVFLVDHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVK 125
              ++SMPK+S+VFLVDHAWTFRL DA+ QL+E+PGLA+RMASLM VD D+D   EEV    
Sbjct:    62 TAESMPKDSDVFLVDHAWTFRLPDAYKQLKEIPGLAERMASLMSVDIDVDAGEEEV---- 117

Query:   126 GVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQA 185
                     + +V+ I+++EI  A +KG  +++WLELE   + DD LLSL+L SKF DL A
Sbjct:   118 ------AEELSVDQIIDNEIRYAADKGYDSLRWLELEGLGV-DDSLLSLHLPSKFQDLVA 170

Query:   186 LSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNF 245
             LSL GNK+E+ ++++QE+ K KNL+ALWLN+NPVL+K +  M D ILQGCP LEIYNS F
Sbjct:   171 LSLIGNKIESADVVIQEIVKFKNLKALWLNDNPVLQKSERQMADEILQGCPSLEIYNSCF 230

Query:   246 TINFGEWALGFCGEVYDKDNPSSLCLR-DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS 304
             T N+G WALGFCG+++ KDNP   C++ D+PL +VTSLDLSNR IHNLVNKAFS  EMP 
Sbjct:   231 TPNYGLWALGFCGDIFGKDNPG--CVQQDQPLCNVTSLDLSNRSIHNLVNKAFSVHEMPL 288

Query:   305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGV 364
             LSHLNIRGN L+QNSV ELLEVLK FP L SL VDIPGPLG +A+EILESL  L  LNGV
Sbjct:   289 LSHLNIRGNSLDQNSVGELLEVLKLFPSLSSLEVDIPGPLGINALEILESLSNLSLLNGV 348

Query:   365 TASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLSAMWLYLMTYRLANEEKIDETSVWY 424
               +KILE GKHV+DSMLQPR+PE + D  L DRVL AMWLY + YRLA++EK+DETS+WY
Sbjct:   349 DTAKILETGKHVVDSMLQPRIPELNPDDTLVDRVLDAMWLYALNYRLADDEKLDETSLWY 408

Query:   425 VMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG 484
             VMDELGSA+RHSDEPNF+VAPFLFMP GKL SAVS+S++WPI++  K DECTRDFL GIG
Sbjct:   409 VMDELGSALRHSDEPNFKVAPFLFMPSGKLESAVSYSVMWPIKHSQKGDECTRDFLSGIG 468

Query:   485 EDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVY 544
             EDKQRSARLTAWF TP++YFI+E+EK+ QKLQ K+    P+  S + S+  SDG    VY
Sbjct:   469 EDKQRSARLTAWFQTPENYFIHEFEKYQQKLQAKAFESKPSNPSVSRSIQHSDGSPLLVY 528

Query:   545 TDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVM 604
             TD+P VEEFLTR EFVIT EPKDADI+WTS+QVD+++K   GITD QY+NQFPFE+CLVM
Sbjct:   529 TDLPQVEEFLTRPEFVITNEPKDADILWTSVQVDDELKKEVGITDDQYINQFPFEACLVM 588

Query:   605 KHHLAETVQ 613
             KHHLAET+Q
Sbjct:   589 KHHLAETIQ 597

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

ZFIN|ZDB-GENE-040426-697 ttll12 "tubulin tyrosine ligase-like family, member 12" [Danio rerio (taxid:7955)]

 Score = 296 (109.3 bits), Expect = 2.0e-36, Sum P(3) = 2.0e-36
 Identities = 76/232 (32%), Positives = 111/232 (47%)

Query:   391 DQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMP 450
             D  + D +L +MW Y  TY+L+     ++  VWY+MDE GS V+HS +P   +AP  + P
Sbjct:   140 DPDIVDLILDSMWKYNQTYQLSQGSAEEKVPVWYIMDEFGSRVQHSSQPTSCMAPLFYAP 199

Query:   451 EGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEK 510
             +      +++S+LWP+QN+   DE TRDF YG  +   R  RL  W   P+     E + 
Sbjct:   200 Q-----QIAYSVLWPLQNLEYGDEVTRDFAYGETDPLVRRCRLLPWL--PE-----ELDA 247

Query:   511 HCQKLQFKS-LSYTPTKSSNTESLHRS-------DGCASRVYTDIPYVEEFLTRTEFVIT 562
                 +Q  S L Y      N E L          DG   +VYT++  V + L    F  T
Sbjct:   248 VSDDVQEPSDLYYETILQENKEKLPVDIQPYCVPDGKVLKVYTEMKQVFDHLKHPRFQFT 307

Query:   563 TEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQK 614
                ++ADIIW    + E  K +        +NQFP E+ L  K  LA   ++
Sbjct:   308 ENEEEADIIWAFSHIREYRKLSEE-RPHVLLNQFPCETILTTKDCLASVARR 358

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

MGI|MGI:3039573 Ttll12 "tubulin tyrosine ligase-like family, member 12" [Mus musculus (taxid:10090)]

 Score = 282 (104.3 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
 Identities = 72/221 (32%), Positives = 110/221 (49%)

Query:   398 VLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSA 457
             VL  MW +  TY+LA+    ++  VWY+MDE GS ++HSD P+F  APF +MP+      
Sbjct:   161 VLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHSDMPSFATAPFFYMPQ-----Q 215

Query:   458 VSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQ---SYFINEYE-KHCQ 513
             V++++LWP++++   +E TRDF YG  +   R   L  W        S+   E   K+ Q
Sbjct:   216 VAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWAPADMLDLSFSTPEPPAKYYQ 275

Query:   514 KLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWT 573
              +  ++    P   S    + R  G   RV+ D+  V   LT   F  T    DADI + 
Sbjct:   276 AILEENKEKLPLAIS---PVARPQGHVFRVHCDVQQVLGHLTHPRFTFTDSEADADIFFH 332

Query:   574 SLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQK 614
                  + MK +   + Q  +NQFP E+ L +K  LA   ++
Sbjct:   333 FSHFKDYMKLSQE-SPQVLLNQFPCENLLTVKDCLASIARR 372

GO:0003674 "molecular_function" evidence=ND

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NZA1 TTLL12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 4.2e-35, Sum P(3) = 4.2e-35
 Identities = 69/223 (30%), Positives = 116/223 (52%)

Query:   391 DQPLADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMP 450
             D+   ++VL  MW Y  TY+L+     ++  VWY+MDE GS ++HSD+P+F  AP  +MP
Sbjct:   142 DEGSVEQVLQEMWKYNQTYQLSQGTAEEKVPVWYIMDEFGSRIQHSDQPSFATAPLFYMP 201

Query:   451 EGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQ---SYFINE 507
             +      +++++LWP++++   DE TRD+ YG  +   R   L  W        + F  E
Sbjct:   202 Q-----QIAYTVLWPLRDLETGDEVTRDYAYGETDRLIRKCVLLPWVPNEVLDVNCFTPE 256

Query:   508 -YEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPK 566
               ++H Q +  ++    P   +   S++  D    +V+TDI  V   LT   FV T +  
Sbjct:   257 PSDEHYQAILAENKEKLPIAIN--PSVYDKDK-VFKVFTDIQQVLNSLTHPRFVFTDKEA 313

Query:   567 DADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLA 609
             +ADI++      +D +  +    +  +NQFP E+ L +K  LA
Sbjct:   314 EADILYNFSHF-KDYRKLSEERPEVMLNQFPCENLLTVKDCLA 355

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

FB|FBgn0033225 CG1550 [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 8.3e-35, Sum P(3) = 8.3e-35
 Identities = 67/228 (29%), Positives = 114/228 (50%)

Query:   396 DRVLSAMWLYLMTYRLANEEKIDETS--VWYVMDELGSAVRHSDEPNFRVAPFLFMPEGK 453
             D++L  +W Y   Y + +E   DE    +WYVMDE+GSAV HSD+PNFR+ P L+     
Sbjct:   133 DKILRRLWKYCHAYSIGSEGLSDEERQPIWYVMDEVGSAVNHSDDPNFRLVPLLY----- 187

Query:   454 LSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDK-QRSARLTAWFH---TPQSYFINEYE 509
             L++  ++S+L+PI++    +  TRD +  + +D  QR A L  W     T +S+   + E
Sbjct:   188 LNTQTTYSVLFPIRDCDVGEAVTRDMVEHVAKDAPQRPALLLPWRDADLTGESFL--QVE 245

Query:   510 KHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDAD 569
                       +  T  K        RS     +VY +   V   LT +EF++     +AD
Sbjct:   246 PRADYFTSGHIPETYPKGDTVPLPARSRCDPLKVYAEYEVVRRHLTSSEFILVNNADEAD 305

Query:   570 IIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRK 617
             ++W +    ++ +     +  +++NQFPFE  + +K  L+   ++  K
Sbjct:   306 VLWLTHHF-KNFEDFADRSPGKFINQFPFEYVITIKDLLSIVGRRAAK 352

GO:0004835 "tubulin-tyrosine ligase activity" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|F1N5K2 TTLL12 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 278 (102.9 bits), Expect = 1.9e-34, Sum P(3) = 1.9e-34
 Identities = 73/235 (31%), Positives = 114/235 (48%)

Query:   387 EWSADQPLA---DRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRV 443
             E+  + P A   D VL  MW +  TY+LA+    ++  VWY+MDE GS ++H+D P+F  
Sbjct:   163 EFHGELPSAEAVDLVLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADVPSFAT 222

Query:   444 APFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTP--- 500
             APF +MP+      V++++LWP++++   +E TRDF YG  +   R   L  W  T    
Sbjct:   223 APFFYMPQ-----QVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRRCMLLPWAPTDLLD 277

Query:   501 -QSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEF 559
               S       +H Q +  ++    P   S     +  D    +VYTDI  V   LT   F
Sbjct:   278 LSSSTPEPPAEHYQAILEENKEKLPLAISPAG--YPCDH-VFKVYTDIQQVLSHLTHPRF 334

Query:   560 VITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQK 614
               T    +AD+++      +D +  +       +NQFP ES L +K  LA   ++
Sbjct:   335 TFTQSEAEADVLYNFSHF-KDYRRLSQERPNVLLNQFPCESLLTVKDCLASVARR 388

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

UNIPROTKB|F1PQD3 TTLL12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
 Identities = 73/235 (31%), Positives = 115/235 (48%)

Query:   387 EWSADQPLA---DRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRV 443
             E+  + P A   D VL  MW +  TY+LA+    ++  VWY+MDE GS ++HSD P+F  
Sbjct:   190 EFHGELPSAEAVDLVLEEMWRFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHSDTPSFAT 249

Query:   444 APFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSY 503
             APF +MP+      V++++LWP++++   +E TRDF YG  +   R   L  W       
Sbjct:   250 APFFYMPQ-----QVAYTLLWPLRDLDTGEEVTRDFAYGEADPLIRKCMLLPWVPADMLD 304

Query:   504 FINEY----EKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEF 559
             F +      ++H Q +  ++    P   S     +  D    +VYTDI  V   L+   F
Sbjct:   305 FSSSTPEPPDEHYQAILEENKEKLPLAISPVA--YPRDH-VFKVYTDIQQVLSHLSHPRF 361

Query:   560 VITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQK 614
               T    DADI++      +D +  +       +NQFP E+ L +K  LA   ++
Sbjct:   362 TFTQSEADADILYNFSHF-KDYRRLSQERPNVLLNQFPCENLLTVKDCLASIARR 415

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

RGD|1305319 Ttll12 "tubulin tyrosine ligase-like family, member 12" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
 Identities = 67/218 (30%), Positives = 105/218 (48%)

Query:   398 VLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSA 457
             VL  MW +  TY+LA+    ++  VWY+MDE GS ++H+D P+F  APF +MP+      
Sbjct:   161 VLEEMWKFNQTYQLAHGTAEEKVPVWYIMDEFGSRIQHADMPSFATAPFFYMPQ-----Q 215

Query:   458 VSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQF 517
             V++++LWP++++   +E TRD+ YG  +   R   L  W         +   +   K   
Sbjct:   216 VAYTLLWPLRDLDTGEEVTRDYAYGEADPLIRKCMLLPWAPADMLDLSSSTPEPPAKYYQ 275

Query:   518 KSLSYTPTKSSNTES-LHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQ 576
               L     K   T S + R  G   RV+ D+  V   LT   F  T    DAD+ +    
Sbjct:   276 AILEENKEKLPLTISPVARPQGHIFRVHCDVQQVLSHLTHPRFTFTDSEADADVYFHFSH 335

Query:   577 VDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQK 614
               +  K +   + Q  +NQFP E+ L +K  LA   ++
Sbjct:   336 FKDYTKLSQE-SPQVLLNQFPCENLLTVKDCLASIARR 372

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

UNIPROTKB|Q14166 TTLL12 "Tubulin--tyrosine ligase-like protein 12" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
 Identities = 69/221 (31%), Positives = 109/221 (49%)

Query:   398 VLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSA 457
             VL  MW +  TY+LA+    ++  VWY+MDE GS ++H+D P+F  APF +MP+      
Sbjct:   166 VLEEMWKFNQTYQLAHGTAEEKMPVWYIMDEFGSRIQHADVPSFATAPFFYMPQ-----Q 220

Query:   458 VSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWFHTPQ----SYFINEYEKHCQ 513
             V++++LWP++++   +E TRDF YG  +   R   L  W  T      S       +H Q
Sbjct:   221 VAYTLLWPLRDLDTGEEVTRDFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQ 280

Query:   514 KLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWT 573
              +  ++    P   +     H   G   +VYTD+  V   LT   F +T    DADI++ 
Sbjct:   281 AILEENKEKLPLDINPVVHPH---GHIFKVYTDVQQVASSLTHPRFTLTQSEADADILFN 337

Query:   574 SLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQK 614
                  +D +  +       +NQFP E+ L +K  LA   ++
Sbjct:   338 FSHF-KDYRKLSQERPGVLLNQFPCENLLTVKDCLASIARR 377

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

WB|WBGene00008405 ttll-12 [Caenorhabditis elegans (taxid:6239)]

 Score = 243 (90.6 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
 Identities = 89/319 (27%), Positives = 141/319 (44%)

Query:   319 SVRELLEVLKGF-PCLQSL-GVDIPGPLGESAIEILESLPTLCTLNGVT-ASKILEE-GK 374
             S R+ +E  +G    L  L G+D      E   E +E + T         A KI  E G 
Sbjct:    92 SARKCVESTEGLVERLAGLFGIDTDST--EEVDETVEKIETSVEKEEAEHAKKISSETGN 149

Query:   375 HVIDSMLQPRLPEWSADQP---LADRVLSAMWLYLMTYRLA---NEEKIDETSVWYVMDE 428
                   +  RL  +S D P   L ++VL A+W Y  TY ++   +  +I++ SVWYVMD+
Sbjct:   150 LPRHESVDARLSSYSVDDPKNELTEKVLKALWKYSQTYSVSYQLDNGEIEKKSVWYVMDD 209

Query:   429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQ 488
              G+ VRHS EPN R+ P +F+P+       ++SI++  + V   +E   D+   +     
Sbjct:   210 FGTRVRHSTEPNVRIVPLMFLPQN-----CAYSIMFLTKPVNTDEEIMMDWASNV----- 259

Query:   489 RSARLTAWF-HTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLH---RSDGCASRVY 544
              +A+   W  +  Q +   ++ K        +L Y  T   N + L        C S ++
Sbjct:   260 ITAQHPEWRKYIEQPWAAQDFSKETMIPDAPTLEYF-TSGRNPDFLAGPTEQQTCQSAIF 318

Query:   545 TDIP---------YVE-----EFLTRTEFVITTEPKDADIIWTSLQVDEDMKTATGITDQ 590
             T +P         Y +     E L   +     + K AD+IW  ++   D K  +     
Sbjct:   319 TSLPILKKRKIKVYADDTQLTEHLKNHKVEYVDDIKKADVIWM-IKHFHDYKQLSEENPC 377

Query:   591 QYVNQFPFESCLVMKHHLA 609
               +NQFPFESC+ +K  LA
Sbjct:   378 GMINQFPFESCITVKDLLA 396

GO:0004835 "tubulin-tyrosine ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_28000022 hypothetical protein (868 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	619
KOG2155	631	consensus Tubulin-tyrosine ligase-related protein	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.03
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.6
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.43
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.42
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.35
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.34
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.28
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.26
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.91
PLN03150	623	hypothetical protein; Provisional	97.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.77
PLN03150	623	hypothetical protein; Provisional	97.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.63
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.56
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.5
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.28
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.08
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.59
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.49
PRK15386	426	type III secretion protein GogB; Provisional	95.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.77
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.54
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	95.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.13
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	94.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.52
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.5
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	93.54
PRK15386	426	type III secretion protein GogB; Provisional	93.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.73
KOG4341	483	consensus F-box protein containing LRR [General fu	91.48
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.4
smart00370	26	LRR Leucine-rich repeats, outliers.	90.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.12
KOG2155	631	consensus Tubulin-tyrosine ligase-related protein	88.77
KOG4341	483	consensus F-box protein containing LRR [General fu	88.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.04
KOG4308	478	consensus LRR-containing protein [Function unknown	86.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	85.67
KOG1083	1306	consensus Putative transcription factor ASH1/LIN-5	82.56

>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.8e-94  Score=749.98  Aligned_cols=379  Identities=35%  Similarity=0.577  Sum_probs=315.8

Q ss_pred             ccccccHHHHHHHhHHHHhcCCCCHHHHHHHHHHhhhcccCCCCceeEEEccCCceeEEEEecC--CCC--CCCCeEeec
Q 007072            5 SNRIETYEDFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCEDGRQRRLVLDSQ--SMP--KESNVFLVD   80 (619)
Q Consensus         5 ~~~~~~~~~f~~~H~~~l~~~~~P~~l~~~L~~kl~~~~fDag~~F~i~~~~~~~~~~~vv~~~--~l~--~~~~vflid   80 (619)
                      +.++++|.+|+++||+||+||||||+||++||+||++|+||||++|||+.++++++-.-.+|++  .++  +..++|+++
T Consensus         1 ~~~a~~f~~F~~~Hg~~L~ASgvPp~lw~rL~~KL~~~tFDaGd~FqI~~~e~~~dEe~e~arel~~~q~nd~~~~~~l~   80 (631)
T KOG2155|consen    1 DRSAYPFSTFLDQHGGQLNASGVPPELWHRLYKKLSDQTFDAGDHFQIICEENEDDEETEFARELEDLQNNDEDNIFLLD   80 (631)
T ss_pred             CCccccHHHHHHhcccccccCCCCHHHHHHHHHHhhhcccCCcCeeeEEEecccchhHHHHHHHHHhccCCCccceeeee
Confidence            4678999999999999999999999999999999999999999999999887643323335665  444  678899999


Q ss_pred             cceeccchHHHHhhhcCcchHHHHHhhhcccCCCCchhhhhhhhhcccccCCCCcchhHHHHhhhhcccccCCCceeeee
Q 007072           81 HAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLE  160 (619)
Q Consensus        81 h~~tf~~~~a~~~L~~vp~L~~Rm~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~l~~L~  160 (619)
                      |+.+|--.+|++...-..||.+|+++++++|.+...+.++   .            ++++                    
T Consensus        81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~---t------------~~~l--------------------  125 (631)
T KOG2155|consen   81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDE---T------------VEKL--------------------  125 (631)
T ss_pred             eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccH---H------------HHHh--------------------
Confidence            9999999999999999999999999999999665544221   0            1100                    


Q ss_pred             cccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccc
Q 007072          161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI  240 (619)
Q Consensus       161 Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~Lei  240 (619)
                            +.                          +++                                           
T Consensus       126 ------e~--------------------------~v~-------------------------------------------  130 (631)
T KOG2155|consen  126 ------ET--------------------------SVE-------------------------------------------  130 (631)
T ss_pred             ------hc--------------------------cch-------------------------------------------
Confidence                  00                          000                                           


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccch
Q 007072          241 YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSV  320 (619)
Q Consensus       241 Ln~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~  320 (619)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (631)
T KOG2155|consen  131 --------------------------------------------------------------------------------  130 (631)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccccCccchhhhccCcceeecccCCCCCCCCCChhhHHHHHH
Q 007072          321 RELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQPLADRVLS  400 (619)
Q Consensus       321 ~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg~~~s~~~~~~~~~~~~~~~~~~~~~~~~e~~~~rV~~  400 (619)
                                                  ..+.+.+.++..|+|.+      .++++++++++| .|+-.|..++.++|++
T Consensus       131 ----------------------------~e~~e~l~~~s~l~G~~------~~~~~vd~~l~~-~~~~~P~~elv~~VL~  175 (631)
T KOG2155|consen  131 ----------------------------KEEAEHLKKISSLTGNL------PRHESVDARLSS-YSVDDPKNELVEKVLK  175 (631)
T ss_pred             ----------------------------hhHHHHHHHHHHhhCCC------CcccchhhccCc-ccccCcchHHHHHHHH
Confidence                                        12223344444555555      257788888888 7888888999999999


Q ss_pred             HHHhhhceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccc
Q 007072          401 AMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL  480 (619)
Q Consensus       401 ~mWk~~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~  480 (619)
                      +||+|+|||+++++++.+++|+|||||||||||||||+||||+|||||||++     +|||||||++++..||||||||+
T Consensus       176 amWky~qtY~la~~~~~ek~svWYvMDefGsrvrHsdePnf~~aPf~fmPq~-----vaYsimwp~k~~~tgeE~trDfa  250 (631)
T KOG2155|consen  176 AMWKYSQTYSLAYQGEIEKKSVWYVMDEFGSRVRHSDEPNFRIAPFMFMPQN-----VAYSIMWPTKPVNTGEEITRDFA  250 (631)
T ss_pred             HHHHhhheeecccCccccccceeEEHhhhhhhhccCCCCcceeeeheecchh-----cceeEEeeccCCCCchHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998     99999999999999999999999


Q ss_pred             cCCCCccchhhhccccccCChhhhHHHHHHHhhhhcccccCCCCCCCCCCccccCCCCCceEEEechhHHHhhcCCCCEE
Q 007072          481 YGIGEDKQRSARLTAWFHTPQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEFV  560 (619)
Q Consensus       481 ~~~~~~~~R~a~L~pw~~~p~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lkVytd~~~v~~~Lt~~~F~  560 (619)
                      +|++++++|+|+|+||+.+|+.+|..++.++-+...+.+....   .....++.+  |+++|||||.+||.+|||+|+|+
T Consensus       251 sg~~~p~~Rk~~l~pWa~tde~~~~~~~~e~~qa~~~e~k~s~---p~~s~pi~h--g~~~kVYtD~~Qv~e~Lt~p~f~  325 (631)
T KOG2155|consen  251 SGVIHPEWRKYILQPWAATDETMIPDATLEYFQATEQETKQSA---PFTSLPILH--GRKIKVYTDDTQVTEHLTNPKFE  325 (631)
T ss_pred             hcCCCHHHHHHHhccccCCCcccCCchHHHHHHHHHHhccccC---Ccccccccc--CceeEEEcCcHHHHHhccCCceE
Confidence            9999999999999999999888887765443333222221111   111123333  78999999999999999999999


Q ss_pred             ecCCCCCccEEEEecccchhHHHhhCCCCceeeccCCCCchhhhhhHHHHHHHhhhcCC
Q 007072          561 ITTEPKDADIIWTSLQVDEDMKTATGITDQQYVNQFPFESCLVMKHHLAETVQKVRKIN  619 (619)
Q Consensus       561 lvd~~~eADIiW~~~h~~~d~k~~~~~~p~~~iNQFP~E~~lt~Kd~La~~~~~~~~~~  619 (619)
                      +|+++++|||+|+++||+ |||++++++|++||||||||+|||||||||++++|++|-|
T Consensus       326 ~t~~~kdADilw~~~hf~-Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r~~g~~  383 (631)
T KOG2155|consen  326 YTDDIKDADILWMIKHFH-DYKKLSEENPCGMINQFPFESCLTVKDLLAACAMRDPGKN  383 (631)
T ss_pred             eccCccccceeeehhhHH-HHHHHhccCCcceeccCchHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999997 8999999999999999999999999999999999999854

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=5.8e-24  Score=232.80  Aligned_cols=234  Identities=24%  Similarity=0.342  Sum_probs=193.2

Q ss_pred             HHHHHhHHHHhcCCCCHHHHHHHHHHhhhcccCCCCceeEEEccC----C-----ceeEEEEecC-CCC---CCCCeEee
Q 007072           13 DFVKVHGVLLAASGLPQSLHRQLFQKLTTETFDAGSYFKIEVCED----G-----RQRRLVLDSQ-SMP---KESNVFLV   79 (619)
Q Consensus        13 ~f~~~H~~~l~~~~~P~~l~~~L~~kl~~~~fDag~~F~i~~~~~----~-----~~~~~vv~~~-~l~---~~~~vfli   79 (619)
                      .|+++...+|+  .+|.+|-+  ..||+        +.++..+.=    +     ...|.|++|+ +++   +|.+||-+
T Consensus        35 ~WLkLnrt~L~--~vPeEL~~--lqkLE--------HLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l  102 (1255)
T KOG0444|consen   35 TWLKLNRTKLE--QVPEELSR--LQKLE--------HLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL  102 (1255)
T ss_pred             eEEEechhhhh--hChHHHHH--Hhhhh--------hhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence            46666677776  78888754  34553        333322211    1     1257888888 888   79999999


Q ss_pred             ccceeccchHHHHhhhcCcchHHHHHhhhcccCCCCchhhhhhhhhcccccCCCCcchhHHHHhhhhcccccCCCceeee
Q 007072           80 DHAWTFRLSDAFSQLQEVPGLAQRMASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWL  159 (619)
Q Consensus        80 dh~~tf~~~~a~~~L~~vp~L~~Rm~~lm~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~~~l~~L  159 (619)
                      +...+.++|  ++||++||.-+||++++..++                                                
T Consensus       103 ~dLt~lDLS--hNqL~EvP~~LE~AKn~iVLN------------------------------------------------  132 (1255)
T KOG0444|consen  103 KDLTILDLS--HNQLREVPTNLEYAKNSIVLN------------------------------------------------  132 (1255)
T ss_pred             ccceeeecc--hhhhhhcchhhhhhcCcEEEE------------------------------------------------
Confidence            999999999  999999999999999877666                                                


Q ss_pred             ecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccc
Q 007072          160 ELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE  239 (619)
Q Consensus       160 ~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~Le  239 (619)
                       ||+|+|+.   ||..++.++.+|.+||||.|+|+++|   +++++|.+|++|.||+||+...+        ++++|+++
T Consensus       133 -LS~N~Iet---IPn~lfinLtDLLfLDLS~NrLe~LP---PQ~RRL~~LqtL~Ls~NPL~hfQ--------LrQLPsmt  197 (1255)
T KOG0444|consen  133 -LSYNNIET---IPNSLFINLTDLLFLDLSNNRLEMLP---PQIRRLSMLQTLKLSNNPLNHFQ--------LRQLPSMT  197 (1255)
T ss_pred             -cccCcccc---CCchHHHhhHhHhhhccccchhhhcC---HHHHHHhhhhhhhcCCChhhHHH--------HhcCccch
Confidence             99999999   99999999999999999999999998   79999999999999999999887        77777665


Q ss_pred             ---ccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       240 ---iLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                         +|.++.|+++.            .+.|.+++    .|.+|..+|||.|.+..+|.++|   ++++|++||||+|+|.
T Consensus       198 sL~vLhms~TqRTl------------~N~Ptsld----~l~NL~dvDlS~N~Lp~vPecly---~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  198 SLSVLHMSNTQRTL------------DNIPTSLD----DLHNLRDVDLSENNLPIVPECLY---KLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hhhhhhcccccchh------------hcCCCchh----hhhhhhhccccccCCCcchHHHh---hhhhhheeccCcCcee
Confidence               78889998874            56677777    59999999999999999999999   6999999999999998


Q ss_pred             ccchHH------------------HHHHHhCCCCCccccccCCC
Q 007072          317 QNSVRE------------------LLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       317 ~i~~~~------------------l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +++...                  |+..+.+++.|+.|++..|.
T Consensus       259 eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  259 ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence            877211                  35567888888888876553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.28  E-value=6.5e-13  Score=129.55  Aligned_cols=88  Identities=24%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhhh
Q 007072          277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILES  354 (619)
Q Consensus       277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~~  354 (619)
                      ..|++|+|++|+|.++......  ++|+|+.|++++|.|.++..   ...+..||+|+.|.+..|+.  ...|...++..
T Consensus        64 ~~L~~L~L~~N~I~~i~~~l~~--~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~  138 (175)
T PF14580_consen   64 PRLKTLDLSNNRISSISEGLDK--NLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYK  138 (175)
T ss_dssp             TT--EEE--SS---S-CHHHHH--H-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH
T ss_pred             hhhhhcccCCCCCCccccchHH--hCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhHHHHHHHH
Confidence            3444444444445444332222  34555555555555544441   12344555555555554443  23456899999


Q ss_pred             cCccccccCccchhh
Q 007072          355 LPTLCTLNGVTASKI  369 (619)
Q Consensus       355 lp~L~~LNg~~~s~~  369 (619)
                      +|+|+.|+|.+++..
T Consensus       139 lP~Lk~LD~~~V~~~  153 (175)
T PF14580_consen  139 LPSLKVLDGQDVTEE  153 (175)
T ss_dssp             -TT-SEETTEETTS-
T ss_pred             cChhheeCCEEccHH
Confidence            999999999999843

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.27  E-value=8.6e-13  Score=145.48  Aligned_cols=164  Identities=19%  Similarity=0.274  Sum_probs=124.8

Q ss_pred             hhcccccCC---CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccc
Q 007072          145 IHNATEKGD---GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK  221 (619)
Q Consensus       145 ~~~~~~~g~---~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~  221 (619)
                      +.+..++++   ..++.|+||+|.|..   +..+.-+-++.|..|+|+.|.|..++  .+.+..|.+|+.|+|+.|.+.+
T Consensus       281 l~~vn~g~lfgLt~L~~L~lS~NaI~r---ih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~Nsi~~  355 (873)
T KOG4194|consen  281 LQAVNEGWLFGLTSLEQLDLSYNAIQR---IHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHNSIDH  355 (873)
T ss_pred             hhhhhcccccccchhhhhccchhhhhe---eecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhcccccchHH
Confidence            334444443   455567777777777   55566668899999999999999998  6899999999999999999987


Q ss_pred             cccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072          222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE  301 (619)
Q Consensus       222 ~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~  301 (619)
                      ..     +..+.++.+|+.|+++  .|...|.+-=-+            ..+..|.+|+.|+|.||+|..+|...|+  +
T Consensus       356 l~-----e~af~~lssL~~LdLr--~N~ls~~IEDaa------------~~f~gl~~LrkL~l~gNqlk~I~krAfs--g  414 (873)
T KOG4194|consen  356 LA-----EGAFVGLSSLHKLDLR--SNELSWCIEDAA------------VAFNGLPSLRKLRLTGNQLKSIPKRAFS--G  414 (873)
T ss_pred             HH-----hhHHHHhhhhhhhcCc--CCeEEEEEecch------------hhhccchhhhheeecCceeeecchhhhc--c
Confidence            75     5678999999999987  343333321000            0122488999999999999999999998  9


Q ss_pred             CCCCcccccCCCCCCccchHHHHHHHhCCCCCcccccc
Q 007072          302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD  339 (619)
Q Consensus       302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld  339 (619)
                      |++|++|||.+|.|.++.    ...|..+ .|+.|.+.
T Consensus       415 l~~LE~LdL~~NaiaSIq----~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  415 LEALEHLDLGDNAIASIQ----PNAFEPM-ELKELVMN  447 (873)
T ss_pred             CcccceecCCCCcceeec----ccccccc-hhhhhhhc
Confidence            999999999999999988    3445555 66666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.22  E-value=6e-12  Score=138.95  Aligned_cols=203  Identities=21%  Similarity=0.183  Sum_probs=112.0

Q ss_pred             hhhhcccccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccc
Q 007072          143 SEIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK  222 (619)
Q Consensus       143 ~~~~~~~~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~  222 (619)
                      .||..-.=-...+|+.|.|++|.|.+   +..+.|..+.+|..|-|++|.|+.+|  ...+++|++|+.|+|+-|+|...
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~---l~~~~F~~lnsL~tlkLsrNrittLp--~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITT---LETGHFDSLNSLLTLKLSRNRITTLP--QRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hcccCCCCCCCCCceEEeeccccccc---cccccccccchheeeecccCcccccC--HHHhhhcchhhhhhccccceeee
Confidence            34444444445778888888888888   77777788888888888888888887  67888888888888888887754


Q ss_pred             ccchhhhHHhhcCCcccccccccccccccccccccc-ccc-----CCCCCCccc-cCCCcCCcccccccCccccccCccc
Q 007072          223 CDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG-EVY-----DKDNPSSLC-LRDRPLQSVTSLDLSNRCIHNLVNK  295 (619)
Q Consensus       223 ~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~-~~~-----~~~~p~~l~-~~~~~L~~L~~LdLS~N~I~~Lp~~  295 (619)
                      .  +   ..+++||+|+.|-+...+-.-.-.=.|.+ ++.     .-+.-..+. ...-.|.+|+.||||+|.|.++..+
T Consensus       237 e--~---ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  237 E--G---LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             h--h---hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence            3  1   23677888877666421111000000100 000     000000000 0011355555555666655555555


Q ss_pred             ccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCcccccc
Q 007072          296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN  362 (619)
Q Consensus       296 ~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LN  362 (619)
                      .++  -.+.|+.|+|+.|.|..++    .+.|..+..|+.|++..|..-... -..+.-+.+|+.||
T Consensus       312 ~Ws--ftqkL~~LdLs~N~i~~l~----~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  312 SWS--FTQKLKELDLSSNRITRLD----EGSFRVLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLD  371 (873)
T ss_pred             hhh--hcccceeEeccccccccCC----hhHHHHHHHhhhhcccccchHHHH-hhHHHHhhhhhhhc
Confidence            544  4455556666666555555    344555556666665555321111 22334455555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=5.5e-12  Score=135.64  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=67.8

Q ss_pred             cCCCceeeeecccCCCCccccccc-cccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072          151 KGDGTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED  229 (619)
Q Consensus       151 ~g~~~l~~L~Ls~~~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~  229 (619)
                      ..-..+....|+++.+..   .+. ..+..||+++.|||++|.+.++.++++.+..||+|+.|+|+.|++......    
T Consensus       118 sn~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----  190 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----  190 (505)
T ss_pred             hhHHhhhheeecCccccc---cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----
Confidence            334667778899999887   222 466799999999999999999999999999999999999999999876521    


Q ss_pred             HHhhcCCcccccccccc
Q 007072          230 AILQGCPKLEIYNSNFT  246 (619)
Q Consensus       230 ~il~~lP~LeiLn~~~T  246 (619)
                      .+-..++.|+.|+++-+
T Consensus       191 ~~~~~l~~lK~L~l~~C  207 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSC  207 (505)
T ss_pred             cchhhhhhhheEEeccC
Confidence            11224555555554433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.14  E-value=3.9e-12  Score=123.05  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=126.0

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ++.|.+|.||+|.|..   +|++++ .+.+|+.|+|++|+|+.+|   ..++.|++|+.|+++-|++.-..      .-+
T Consensus        32 ~s~ITrLtLSHNKl~~---vppnia-~l~nlevln~~nnqie~lp---~~issl~klr~lnvgmnrl~~lp------rgf   98 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV---VPPNIA-ELKNLEVLNLSNNQIEELP---TSISSLPKLRILNVGMNRLNILP------RGF   98 (264)
T ss_pred             hhhhhhhhcccCceee---cCCcHH-HhhhhhhhhcccchhhhcC---hhhhhchhhhheecchhhhhcCc------ccc
Confidence            4567889999999988   777754 5789999999999999997   67899999999999999987554      237


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      +.||.||+|++.+....            ....|+..+    -+..|+.|.|++|...-+|+.+-   ++.+|+.|.+|+
T Consensus        99 gs~p~levldltynnl~------------e~~lpgnff----~m~tlralyl~dndfe~lp~dvg---~lt~lqil~lrd  159 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLN------------ENSLPGNFF----YMTTLRALYLGDNDFEILPPDVG---KLTNLQILSLRD  159 (264)
T ss_pred             CCCchhhhhhccccccc------------cccCCcchh----HHHHHHHHHhcCCCcccCChhhh---hhcceeEEeecc
Confidence            89999999998764322            123454444    58889999999999999999888   699999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |.+-+++     +.+..+..|++|.+..|.
T Consensus       160 ndll~lp-----keig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  160 NDLLSLP-----KEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             CchhhCc-----HHHHHHHHHHHHhcccce
Confidence            9998766     667778889999887664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=3.3e-11  Score=124.67  Aligned_cols=198  Identities=24%  Similarity=0.293  Sum_probs=124.2

Q ss_pred             eeecccCCCCcccccccc-ccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          158 WLELEDADIGDDMLLSLN-LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       158 ~L~Ls~~~I~~~~li~l~-l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      -|.+-+|.|+..  --.. +.+.+..+..|||.+|+|+++.++..++.+||+|++||||.|+++.--.     .......
T Consensus        49 llvln~~~id~~--gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~  121 (418)
T KOG2982|consen   49 LLVLNGSIIDNE--GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLK  121 (418)
T ss_pred             hheecCCCCCcc--hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-----cCccccc
Confidence            577778888771  1111 2368899999999999999999999999999999999999999886431     1122334


Q ss_pred             ccccccccccccccccc--------------ccccccccCCCCC--Cccc------cCCCcCCcccccccCccccccCcc
Q 007072          237 KLEIYNSNFTINFGEWA--------------LGFCGEVYDKDNP--SSLC------LRDRPLQSVTSLDLSNRCIHNLVN  294 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~--------------l~fc~~~~~~~~p--~~l~------~~~~~L~~L~~LdLS~N~I~~Lp~  294 (619)
                      +|.++-++.|..  .|.              +-.+.+.+.+=+-  .+.+      .+.+.+.++..+-++-|++.++.+
T Consensus       122 nl~~lVLNgT~L--~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  122 NLRVLVLNGTGL--SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             ceEEEEEcCCCC--ChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            555555444432  122              1112221111000  0000      011122222222222333332222


Q ss_pred             ---cccC-------------CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC---CC--chhHHHhh
Q 007072          295 ---KAFS-------------PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP---LG--ESAIEILE  353 (619)
Q Consensus       295 ---~~f~-------------~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~---l~--~~~~~il~  353 (619)
                         ++|-             ...+|.+..|||+.|+|.+|..   ...+.+|++|..|.+..++.   +.  .-..-+++
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas---vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS---VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH---HHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence               1221             1358999999999999999985   55689999999999976653   22  22267899


Q ss_pred             hcCccccccCccch
Q 007072          354 SLPTLCTLNGVTAS  367 (619)
Q Consensus       354 ~lp~L~~LNg~~~s  367 (619)
                      +|++++.|||..++
T Consensus       277 RL~~v~vLNGskIs  290 (418)
T KOG2982|consen  277 RLTKVQVLNGSKIS  290 (418)
T ss_pred             eccceEEecCcccc
Confidence            99999999999887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=8.1e-11  Score=114.92  Aligned_cols=129  Identities=26%  Similarity=0.372  Sum_probs=54.1

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|+|..  +.  ++...+.+|+.|+|++|.|+.++    .+.+|++|+.|+|++|.+.....+     +..
T Consensus        19 ~~~~~L~L~~n~I~~--Ie--~L~~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~~~-----l~~   85 (175)
T PF14580_consen   19 VKLRELNLRGNQIST--IE--NLGATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSISEG-----LDK   85 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T----T----TT--EEE--SS---S-CHH-----HHH
T ss_pred             ccccccccccccccc--cc--chhhhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccccc-----hHH
Confidence            567889999999998  33  34457899999999999999987    577899999999999999876411     112


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .                                         +++|+.|+|++|+|.++.. +-....+|+|+.|+|.||
T Consensus        86 ~-----------------------------------------lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   86 N-----------------------------------------LPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             H------------------------------------------TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-
T ss_pred             h-----------------------------------------CCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCC
Confidence            2                                         4566777788888888755 222338999999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                      ++.+-..= =.-++..+|+|+.|+-
T Consensus       124 Pv~~~~~Y-R~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  124 PVCEKKNY-RLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             GGGGSTTH-HHHHHHH-TT-SEETT
T ss_pred             cccchhhH-HHHHHHHcChhheeCC
Confidence            99876511 1346889999999984

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.03  E-value=5.7e-10  Score=133.25  Aligned_cols=185  Identities=23%  Similarity=0.263  Sum_probs=106.7

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCccc-chhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLE-TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~-~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      +.+..|+|++|+|..   .....+..+|+|+.|+|++|.+. .++  ...+.++++|+.|+|++|.+....+.       
T Consensus        69 ~~v~~L~L~~~~i~~---~~~~~~~~l~~L~~L~Ls~n~~~~~ip--~~~~~~l~~L~~L~Ls~n~l~~~~p~-------  136 (968)
T PLN00113         69 SRVVSIDLSGKNISG---KISSAIFRLPYIQTINLSNNQLSGPIP--DDIFTTSSSLRYLNLSNNNFTGSIPR-------  136 (968)
T ss_pred             CcEEEEEecCCCccc---cCChHHhCCCCCCEEECCCCccCCcCC--hHHhccCCCCCEEECcCCccccccCc-------
Confidence            467778888887776   22344567788888888888775 343  34455777778888777776543321       


Q ss_pred             hcCCccccccccccccccccc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE  301 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~  301 (619)
                      ..+++|+.|+++...-.+..-           |...++.+....|..+    ..+.+|+.|+|++|.+....+..|.  +
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~l~~~~p~~l~--~  210 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL----TNLTSLEFLTLASNQLVGQIPRELG--Q  210 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh----hhCcCCCeeeccCCCCcCcCChHHc--C
Confidence            235666666654322211100           0000111111122222    2467778888888877754444444  6


Q ss_pred             CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +++|+.|+|++|.+...-    +..+.++++|++|++..+...+.. -..+..+++|+.|
T Consensus       211 l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L  265 (968)
T PLN00113        211 MKSLKWIYLGYNNLSGEI----PYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYL  265 (968)
T ss_pred             cCCccEEECcCCccCCcC----ChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEE
Confidence            788888888888776432    455778888888888766432111 2334556667665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.01  E-value=5.7e-10  Score=133.25  Aligned_cols=187  Identities=17%  Similarity=0.144  Sum_probs=108.6

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|+|++|.|..  .+|.+++..+++|+.|+|++|.+...-+    ...+++|+.|+|++|.+....+     ..+
T Consensus        92 l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~~~~~~p-----~~~  160 (968)
T PLN00113         92 LPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNMLSGEIP-----NDI  160 (968)
T ss_pred             CCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCcccccCC-----hHH
Confidence            3566777777777654  3555555566666666666665543210    1345555555555555543221     123


Q ss_pred             hcCCccccccccccccccccc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE  301 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~  301 (619)
                      ..+++|+.|+++.+...+...           |...++.+....|..    ...+.+|+.|+|++|.+....+..|.  +
T Consensus       161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~l~--~  234 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIG--G  234 (968)
T ss_pred             hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH----HcCcCCccEEECcCCccCCcCChhHh--c
Confidence            445555555554332211100           001111111122322    23588999999999999854444454  8


Q ss_pred             CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +++|++|++++|.+...-    +..+.++++|+.|.+..+...+.. -..+..+++|+.|
T Consensus       235 l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L  289 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPI----PSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISL  289 (968)
T ss_pred             CCCCCEEECcCceecccc----ChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEE
Confidence            999999999999986433    567899999999999877532211 1234556777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=3.6e-10  Score=117.20  Aligned_cols=144  Identities=20%  Similarity=0.301  Sum_probs=91.0

Q ss_pred             CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG  258 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~  258 (619)
                      .+.-|+.||||+|.|..+++   .++=+|.++.|+||.|.+...++       +..+++|..|+++....+         
T Consensus       282 TWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~N~Ls---------  342 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN-------LAELPQLQLLDLSGNLLA---------  342 (490)
T ss_pred             hHhhhhhccccccchhhhhh---hhhhccceeEEeccccceeeehh-------hhhcccceEeecccchhH---------
Confidence            44556666666666665553   33445556666666666655542       455566666655532211         


Q ss_pred             cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072          259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                               .++.-...|-+++.|.|++|.|..+..    ...+=+|..|++++|+|.+++.   .+-++++|+|+.|.+
T Consensus       343 ---------~~~Gwh~KLGNIKtL~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~lde---V~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  343 ---------ECVGWHLKLGNIKTLKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDE---VNHIGNLPCLETLRL  406 (490)
T ss_pred             ---------hhhhhHhhhcCEeeeehhhhhHhhhhh----hHhhhhheeccccccchhhHHH---hcccccccHHHHHhh
Confidence                     000001146788999999999998865    2246678999999999987762   455889999999998


Q ss_pred             cCCCC--CCchhHHHhhhcCc
Q 007072          339 DIPGP--LGESAIEILESLPT  357 (619)
Q Consensus       339 d~p~~--l~~~~~~il~~lp~  357 (619)
                      -.|+.  +..|.-++++.+..
T Consensus       407 ~~NPl~~~vdYRTKVLa~FGE  427 (490)
T KOG1259|consen  407 TGNPLAGSVDYRTKVLARFGE  427 (490)
T ss_pred             cCCCccccchHHHHHHHHHhh
Confidence            76654  44566788777764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.75  E-value=7.5e-09  Score=106.93  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=17.1

Q ss_pred             CCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          303 PSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       303 ~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      +.|++|++++|.|.+.....+...+..+++|+.|+++.|
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence            444444444444443333333344444444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.71  E-value=2.7e-09  Score=114.07  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=42.6

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCC-Ccccccc
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN-NPVLKKC  223 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~-Npi~~~~  223 (619)
                      ..+.|+.|+|..   +|...|+.+++|+.|||+.|.|+.+.  ..++.||++|..|-|-+ |+|....
T Consensus        70 veirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~--p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   70 VEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIA--PDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             eEEEeccCCccc---CChhhccchhhhceecccccchhhcC--hHhhhhhHhhhHHHhhcCCchhhhh
Confidence            345577777777   77777777777777777777777766  56777777776666655 6666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.70  E-value=1.7e-08  Score=104.24  Aligned_cols=66  Identities=24%  Similarity=0.263  Sum_probs=35.2

Q ss_pred             CcccccccCccccccCccccc--CCCCCCCCcccccCCCCCCccchHHHHHHH-hCCCCCccccccCCC
Q 007072          277 QSVTSLDLSNRCIHNLVNKAF--SPAEMPSLSHLNIRGNPLEQNSVRELLEVL-KGFPCLQSLGVDIPG  342 (619)
Q Consensus       277 ~~L~~LdLS~N~I~~Lp~~~f--~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l-~~~~~L~sL~ld~p~  342 (619)
                      .+|+.|+|++|.+.......+  ....+++|++|++++|++.+..+..+...+ .+.+.|++|+++.+.
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            466677777776653332111  112566677777777766654433332221 234667777666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=7.4e-09  Score=111.91  Aligned_cols=227  Identities=19%  Similarity=0.195  Sum_probs=140.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|-+..- .....+...+|+|+.|+|+.|++...-. ...---+++||.|.||+|-++.+.    ..-++.
T Consensus       146 ~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l~~lK~L~l~~CGls~k~----V~~~~~  219 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLLSHLKQLVLNSCGLSWKD----VQWILL  219 (505)
T ss_pred             CcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCcc-ccchhhhhhhheEEeccCCCCHHH----HHHHHH
Confidence            5678899999997761 2234556799999999999999887642 223336999999999999999655    567889


Q ss_pred             cCCccccccccccccccccccccccccc------CC-CCC-Ccccc--CCCcCCcccccccCccccccCcc--c--ccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVY------DK-DNP-SSLCL--RDRPLQSVTSLDLSNRCIHNLVN--K--AFSP  299 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~------~~-~~p-~~l~~--~~~~L~~L~~LdLS~N~I~~Lp~--~--~f~~  299 (619)
                      .||+|+.|.+......+--  .+...++      +. +++ -...+  -...++.|+.|+++.|+|.++-.  .  ..+.
T Consensus       220 ~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             hCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence            9999999888643222100  0111000      00 000 11111  12246666677777777665432  1  1122


Q ss_pred             CCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchh---HHHhhhcCccccccCccchhhh-ccCcc
Q 007072          300 AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA---IEILESLPTLCTLNGVTASKIL-EEGKH  375 (619)
Q Consensus       300 ~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~---~~il~~lp~L~~LNg~~~s~~~-~~~~~  375 (619)
                      ..+++|++|+++.|+|.+|.+   ..-+-.+++|+.|.+..++.-....   +.++++++.|..||+.+++--. -.+  
T Consensus       298 ~~f~kL~~L~i~~N~I~~w~s---l~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~A--  372 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNIRDWRS---LNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDA--  372 (505)
T ss_pred             cccccceeeecccCccccccc---cchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhh--
Confidence            357777777777777777763   3334555666666666554322211   7788888888888888886321 111  


Q ss_pred             eeecccCCCCCCCCCChhhHHHHHHHHHhhhce
Q 007072          376 VIDSMLQPRLPEWSADQPLADRVLSAMWLYLMT  408 (619)
Q Consensus       376 ~~~~~~~~~~~~~~~~e~~~~rV~~~mWk~~~t  408 (619)
                                     +-.-...||.+||++...
T Consensus       373 ---------------El~~~~~~~~ne~s~~~~  390 (505)
T KOG3207|consen  373 ---------------ELYYLSKIFDNEISDAEE  390 (505)
T ss_pred             ---------------hhhHHhhhhhhhhhhhhc
Confidence                           123356788999988663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.68  E-value=7.3e-09  Score=110.85  Aligned_cols=63  Identities=27%  Similarity=0.360  Sum_probs=50.5

Q ss_pred             CcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       274 ~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      ..|.+|+.||||+|.|+.+-.+.|.  ++..|+.|-|.+|+|..++    ...|.++..|+.|.+..|.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhc--chhhhhhhhcCcchHHHHH----HHhhhccccceeeeecCCe
Confidence            3678888888888888888888886  7888888888888888777    5677888888888877665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.60  E-value=4.5e-09  Score=117.15  Aligned_cols=155  Identities=23%  Similarity=0.346  Sum_probs=109.5

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      .|+.+.||.|...++..   +|-.+ +.|.+|+.|++++|+|.++.   +.++.||.|+++++-.|.+...   |+...|
T Consensus        30 qMt~~~WLkLnrt~L~~---vPeEL-~~lqkLEHLs~~HN~L~~vh---GELs~Lp~LRsv~~R~N~LKns---GiP~di   99 (1255)
T KOG0444|consen   30 QMTQMTWLKLNRTKLEQ---VPEEL-SRLQKLEHLSMAHNQLISVH---GELSDLPRLRSVIVRDNNLKNS---GIPTDI   99 (1255)
T ss_pred             HhhheeEEEechhhhhh---ChHHH-HHHhhhhhhhhhhhhhHhhh---hhhccchhhHHHhhhccccccC---CCCchh
Confidence            36889999999999888   55433 46888999999999998876   7889999999999988886543   355555


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      ++ +..|.+|+++..+..              +-|.+++    .-.++-.|+||+|+|..+|+.+|.  +|.-|-.|+||
T Consensus       100 F~-l~dLt~lDLShNqL~--------------EvP~~LE----~AKn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS  158 (1255)
T KOG0444|consen  100 FR-LKDLTILDLSHNQLR--------------EVPTNLE----YAKNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLS  158 (1255)
T ss_pred             cc-cccceeeecchhhhh--------------hcchhhh----hhcCcEEEEcccCccccCCchHHH--hhHhHhhhccc
Confidence            54 677888888754432              2333333    133556778888888888888776  77888888888


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|.++.++     .-+.++..|++|.+++|+
T Consensus       159 ~NrLe~LP-----PQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  159 NNRLEMLP-----PQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             cchhhhcC-----HHHHHHhhhhhhhcCCCh
Confidence            88877766     223444555555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.56  E-value=7.2e-08  Score=112.97  Aligned_cols=55  Identities=16%  Similarity=0.122  Sum_probs=31.8

Q ss_pred             cccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +|+.|+||+|.|..+|.      ..++|+.|++++|+|..++     ..+.++++|+.|+++.|..
T Consensus       403 ~L~~LdLS~N~LssIP~------l~~~L~~L~Ls~NqLt~LP-----~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        403 ELKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLTRLP-----ESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             CCCEEEccCCcCCCCCc------chhhhhhhhhccCcccccC-----hHHhhccCCCeEECCCCCC
Confidence            34444555555444442      1234556666666666544     3466778888888877753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.56  E-value=7e-09  Score=100.78  Aligned_cols=131  Identities=26%  Similarity=0.304  Sum_probs=107.5

Q ss_pred             CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG  258 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~  258 (619)
                      .+.+++.|-||+|||+.++   +.+..|.+|++|++++|.+......      ...+|.|.+||+.....          
T Consensus        31 ~~s~ITrLtLSHNKl~~vp---pnia~l~nlevln~~nnqie~lp~~------issl~klr~lnvgmnrl----------   91 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVP---PNIAELKNLEVLNLSNNQIEELPTS------ISSLPKLRILNVGMNRL----------   91 (264)
T ss_pred             chhhhhhhhcccCceeecC---CcHHHhhhhhhhhcccchhhhcChh------hhhchhhhheecchhhh----------
Confidence            5678899999999999987   6778899999999999999987533      68899999999874332          


Q ss_pred             cccCCCCCCccccCCCcCCcccccccCccccc--cCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccc
Q 007072          259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH--NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL  336 (619)
Q Consensus       259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~--~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL  336 (619)
                              ..+.+++..+..|+.|||++|.+.  .+|..+|   .|..|+-|-|++|.++-++     .-++++++|+-|
T Consensus        92 --------~~lprgfgs~p~levldltynnl~e~~lpgnff---~m~tlralyl~dndfe~lp-----~dvg~lt~lqil  155 (264)
T KOG0617|consen   92 --------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFF---YMTTLRALYLGDNDFEILP-----PDVGKLTNLQIL  155 (264)
T ss_pred             --------hcCccccCCCchhhhhhccccccccccCCcchh---HHHHHHHHHhcCCCcccCC-----hhhhhhcceeEE
Confidence                    223355667889999999999998  7888888   6999999999999987666     557888999999


Q ss_pred             cccCCCCC
Q 007072          337 GVDIPGPL  344 (619)
Q Consensus       337 ~ld~p~~l  344 (619)
                      .+..|..+
T Consensus       156 ~lrdndll  163 (264)
T KOG0617|consen  156 SLRDNDLL  163 (264)
T ss_pred             eeccCchh
Confidence            88766544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.43  E-value=3.2e-07  Score=107.68  Aligned_cols=145  Identities=18%  Similarity=0.082  Sum_probs=67.4

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccccc----------
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD----------  224 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~----------  224 (619)
                      .+..|.+++|+|..   +|.    ..|+|++|+|++|+|+.++.      ..++|+.|+|++|.+.....          
T Consensus       223 ~L~~L~L~~N~Lt~---LP~----lp~~Lk~LdLs~N~LtsLP~------lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~L  289 (788)
T PRK15387        223 HITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPV------LPPGLLELSIFSNPLTHLPALPSGLCKLWI  289 (788)
T ss_pred             CCCEEEccCCcCCC---CCC----CCCCCcEEEecCCccCcccC------cccccceeeccCCchhhhhhchhhcCEEEC
Confidence            45667777777666   331    24677777777777776652      12445555555554443210          


Q ss_pred             -chhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCC
Q 007072          225 -HCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP  303 (619)
Q Consensus       225 -~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~  303 (619)
                       ++-+..+...+|+|+.|+++..+-.+--.+..+-..+...+ +.+........+|+.||||+|+|..+|.      ..+
T Consensus       290 s~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~-N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~------lp~  362 (788)
T PRK15387        290 FGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN-NQLTSLPTLPSGLQELSVSDNQLASLPT------LPS  362 (788)
T ss_pred             cCCccccccccccccceeECCCCccccCCCCccccccccccc-CccccccccccccceEecCCCccCCCCC------CCc
Confidence             00001111234677777775432211000000000000000 0111111122467788888888887764      224


Q ss_pred             CCcccccCCCCCCccc
Q 007072          304 SLSHLNIRGNPLEQNS  319 (619)
Q Consensus       304 ~L~~LnLs~N~i~~i~  319 (619)
                      +|+.|++++|.|..++
T Consensus       363 ~L~~L~Ls~N~L~~LP  378 (788)
T PRK15387        363 ELYKLWAYNNRLTSLP  378 (788)
T ss_pred             ccceehhhccccccCc
Confidence            5555666666655444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.42  E-value=3.5e-08  Score=105.91  Aligned_cols=151  Identities=25%  Similarity=0.294  Sum_probs=96.3

Q ss_pred             eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072          156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC  235 (619)
Q Consensus       156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l  235 (619)
                      +....++.|+|..   +|-++..--.-++.+.++.|++.-+   +..++.+++|..|+|++|++....-+      +.++
T Consensus       390 Vt~VnfskNqL~e---lPk~L~~lkelvT~l~lsnn~isfv---~~~l~~l~kLt~L~L~NN~Ln~LP~e------~~~l  457 (565)
T KOG0472|consen  390 VTSVNFSKNQLCE---LPKRLVELKELVTDLVLSNNKISFV---PLELSQLQKLTFLDLSNNLLNDLPEE------MGSL  457 (565)
T ss_pred             eEEEecccchHhh---hhhhhHHHHHHHHHHHhhcCccccc---hHHHHhhhcceeeecccchhhhcchh------hhhh
Confidence            4445555555555   3333332222223334455544443   35666677778888888877765422      3455


Q ss_pred             CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072          236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i  315 (619)
                      -.|+++|+++.. +             +..|.++-    .+.-|+.+-.|+|+|..++++-..  +|.+|..|||.+|.|
T Consensus       458 v~Lq~LnlS~Nr-F-------------r~lP~~~y----~lq~lEtllas~nqi~~vd~~~l~--nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  458 VRLQTLNLSFNR-F-------------RMLPECLY----ELQTLETLLASNNQIGSVDPSGLK--NMRNLTTLDLQNNDL  517 (565)
T ss_pred             hhhheecccccc-c-------------ccchHHHh----hHHHHHHHHhccccccccChHHhh--hhhhcceeccCCCch
Confidence            557777776531 1             22232222    355677777788888888886444  899999999999999


Q ss_pred             CccchHHHHHHHhCCCCCccccccCCCC
Q 007072          316 EQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       316 ~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      .+++     ..+++|.+|++|.+++|++
T Consensus       518 q~IP-----p~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  518 QQIP-----PILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhCC-----hhhccccceeEEEecCCcc
Confidence            8887     6899999999999998874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.42  E-value=5e-08  Score=113.14  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=55.1

Q ss_pred             cccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCc
Q 007072          255 GFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ  334 (619)
Q Consensus       255 ~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~  334 (619)
                      .||+++.-.+..   .+......+|+.|+||+|+|..+|.+.+.  +|+.|+.|+||||.+..++     ..+..|+.|+
T Consensus       364 LylanN~Ltd~c---~p~l~~~~hLKVLhLsyNrL~~fpas~~~--kle~LeeL~LSGNkL~~Lp-----~tva~~~~L~  433 (1081)
T KOG0618|consen  364 LYLANNHLTDSC---FPVLVNFKHLKVLHLSYNRLNSFPASKLR--KLEELEELNLSGNKLTTLP-----DTVANLGRLH  433 (1081)
T ss_pred             HHHhcCcccccc---hhhhccccceeeeeecccccccCCHHHHh--chHHhHHHhcccchhhhhh-----HHHHhhhhhH
Confidence            577765422221   12223466899999999999999998888  9999999999999999887     2344555555


Q ss_pred             cccccCC
Q 007072          335 SLGVDIP  341 (619)
Q Consensus       335 sL~ld~p  341 (619)
                      .|....|
T Consensus       434 tL~ahsN  440 (1081)
T KOG0618|consen  434 TLRAHSN  440 (1081)
T ss_pred             HHhhcCC
Confidence            5554433

>PLN03210 Resistant to P

Probab=98.41  E-value=6.3e-07  Score=110.03  Aligned_cols=20  Identities=10%  Similarity=0.253  Sum_probs=17.2

Q ss_pred             cccCcceeeEeccccccccc
Q 007072          415 EKIDETSVWYVMDELGSAVR  434 (619)
Q Consensus       415 ~~~~~~p~WYvmDE~GsaI~  434 (619)
                      .++.++|.||-+...|+.+.
T Consensus       960 l~g~evp~~f~hr~~g~sl~  979 (1153)
T PLN03210        960 LSGEEVPSYFTHRTTGASLT  979 (1153)
T ss_pred             CCCccCchhccCCcccceee
Confidence            35788999999999999885

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.35  E-value=1.2e-07  Score=98.76  Aligned_cols=130  Identities=26%  Similarity=0.301  Sum_probs=95.9

Q ss_pred             CceeeeecccCCCCcccccccccc-CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLS-SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~-~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..++.|+||+|.|...     +=+ .-.|.++.|+||.|.|..++    .+..|++|+.||||+|.+....      .+-
T Consensus       284 q~LtelDLS~N~I~~i-----DESvKL~Pkir~L~lS~N~i~~v~----nLa~L~~L~~LDLS~N~Ls~~~------Gwh  348 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI-----DESVKLAPKLRRLILSQNRIRTVQ----NLAELPQLQLLDLSGNLLAECV------GWH  348 (490)
T ss_pred             hhhhhccccccchhhh-----hhhhhhccceeEEeccccceeeeh----hhhhcccceEeecccchhHhhh------hhH
Confidence            3567799999998871     112 23589999999999999875    5899999999999999988754      123


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs  311 (619)
                      ..+-|++.|+++  +|..                -.+ .+.+.|.+|..||+++|+|..+.. ....  ++|-|++|.|+
T Consensus       349 ~KLGNIKtL~La--~N~i----------------E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG--~LPCLE~l~L~  407 (490)
T KOG1259|consen  349 LKLGNIKTLKLA--QNKI----------------ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIG--NLPCLETLRLT  407 (490)
T ss_pred             hhhcCEeeeehh--hhhH----------------hhh-hhhHhhhhheeccccccchhhHHHhcccc--cccHHHHHhhc
Confidence            445566666654  1110                000 134468899999999999999866 2223  79999999999


Q ss_pred             CCCCCccc
Q 007072          312 GNPLEQNS  319 (619)
Q Consensus       312 ~N~i~~i~  319 (619)
                      +|+|.-+.
T Consensus       408 ~NPl~~~v  415 (490)
T KOG1259|consen  408 GNPLAGSV  415 (490)
T ss_pred             CCCccccc
Confidence            99997665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.35  E-value=2.9e-07  Score=108.01  Aligned_cols=158  Identities=18%  Similarity=0.149  Sum_probs=92.2

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|+|..   +|..+   +++|+.|+|++|+|+.++...     .++|+.|+|++|.+....+     .   
T Consensus       262 s~L~~L~Ls~N~L~~---LP~~l---~~sL~~L~Ls~N~Lt~LP~~l-----p~sL~~L~Ls~N~Lt~LP~-----~---  322 (754)
T PRK15370        262 SALQSLDLFHNKISC---LPENL---PEELRYLSVYDNSIRTLPAHL-----PSGITHLNVQSNSLTALPE-----T---  322 (754)
T ss_pred             CCCCEEECcCCccCc---ccccc---CCCCcEEECCCCccccCcccc-----hhhHHHHHhcCCccccCCc-----c---
Confidence            368889999999887   55433   258899999999988876321     1357777777777665431     1   


Q ss_pred             cCCccccccccccccc---ccc-----cccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072          234 GCPKLEIYNSNFTINF---GEW-----ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL  305 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~---~~~-----~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L  305 (619)
                      -+++|+.|+++..+..   ..+     .|..+.+.+. ..|.      ....+|+.|+|++|.|..+|..+.     ++|
T Consensus       323 l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~-~LP~------~lp~~L~~LdLs~N~Lt~LP~~l~-----~sL  390 (754)
T PRK15370        323 LPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT-VLPE------TLPPTITTLDVSRNALTNLPENLP-----AAL  390 (754)
T ss_pred             ccccceeccccCCccccCChhhcCcccEEECCCCCCC-cCCh------hhcCCcCEEECCCCcCCCCCHhHH-----HHH
Confidence            1244555444322111   000     0000011110 1111      112467777777777777766432     357


Q ss_pred             cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       306 ~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +.|++++|+|..++ ..++..+..++++..|.+..|+.
T Consensus       391 ~~LdLs~N~L~~LP-~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        391 QIMQASRNNLVRLP-ESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             HHHhhccCCcccCc-hhHHHHhhcCCCccEEEeeCCCc
Confidence            77888888887666 23455666778888888887763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.34  E-value=2e-07  Score=74.82  Aligned_cols=60  Identities=28%  Similarity=0.480  Sum_probs=54.7

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV  219 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi  219 (619)
                      .+++|++++|+|..   ++.+.+.++++|+.|+|++|+|..++  ...+.+|++|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~l~~---i~~~~f~~l~~L~~L~l~~N~l~~i~--~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTE---IPPDSFSNLPNLETLDLSNNNLTSIP--PDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESE---ECTTTTTTGTTESEEEETSSSESEEE--TTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCc---cCHHHHcCCCCCCEeEccCCccCccC--HHHHcCCCCCCEEeCcCCcC
Confidence            47889999999999   88899999999999999999999987  56899999999999999975

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.34  E-value=6.2e-07  Score=105.22  Aligned_cols=59  Identities=27%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      ..++.|+|++|+|..   +|..+.   .+|+.|+|++|+|..++..   +  .++|+.|+|++|.+....
T Consensus       241 ~~L~~L~Ls~N~L~~---LP~~l~---s~L~~L~Ls~N~L~~LP~~---l--~~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        241 DTIQEMELSINRITE---LPERLP---SALQSLDLFHNKISCLPEN---L--PEELRYLSVYDNSIRTLP  299 (754)
T ss_pred             ccccEEECcCCccCc---CChhHh---CCCCEEECcCCccCccccc---c--CCCCcEEECCCCccccCc
Confidence            468999999999987   565543   4799999999999988732   2  258999999999987653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.28  E-value=2.7e-07  Score=107.25  Aligned_cols=156  Identities=20%  Similarity=0.251  Sum_probs=112.4

Q ss_pred             ccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072          150 EKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED  229 (619)
Q Consensus       150 ~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~  229 (619)
                      |.-+..+.-|.+.+|.+.+.+..   ...+++.|+-|+|++|.|.++|  ...+++++.|+.|+||||.+....      
T Consensus       355 e~~~~~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsyNrL~~fp--as~~~kle~LeeL~LSGNkL~~Lp------  423 (1081)
T KOG0618|consen  355 ENNHAALQELYLANNHLTDSCFP---VLVNFKHLKVLHLSYNRLNSFP--ASKLRKLEELEELNLSGNKLTTLP------  423 (1081)
T ss_pred             chhhHHHHHHHHhcCcccccchh---hhccccceeeeeecccccccCC--HHHHhchHHhHHHhcccchhhhhh------
Confidence            34445666788999999984443   3568899999999999999998  778999999999999999987664      


Q ss_pred             HHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccc
Q 007072          230 AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN  309 (619)
Q Consensus       230 ~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln  309 (619)
                      .-...|+.|++|..+...-              ...|     ....+.+|+.+|||.|.++.+--..-  ...|+|++||
T Consensus       424 ~tva~~~~L~tL~ahsN~l--------------~~fP-----e~~~l~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLd  482 (1081)
T KOG0618|consen  424 DTVANLGRLHTLRAHSNQL--------------LSFP-----ELAQLPQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLD  482 (1081)
T ss_pred             HHHHhhhhhHHHhhcCCce--------------eech-----hhhhcCcceEEecccchhhhhhhhhh--CCCcccceee
Confidence            2245566777665431110              0112     23358899999999999996533111  1348999999


Q ss_pred             cCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      ++||.-...+    .+.|..|+++....++.+
T Consensus       483 lSGN~~l~~d----~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  483 LSGNTRLVFD----HKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccCCcccccc----hhhhHHhhhhhheecccC
Confidence            9999865555    455677777777777766

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.26  E-value=2.4e-07  Score=74.35  Aligned_cols=60  Identities=27%  Similarity=0.459  Sum_probs=55.0

Q ss_pred             CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      ++|+.|+|++|+|..+|...|.  ++++|+.|++++|.|..++    ...|.++++|++|+++.|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIP----PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSSESEEE----TTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCccCccC----HHHHcCCCCCCEEeCcCCc
Confidence            3689999999999999999998  9999999999999999998    6779999999999988764

...

>PLN03210 Resistant to P

Probab=98.25  E-value=2.6e-06  Score=104.64  Aligned_cols=79  Identities=19%  Similarity=0.246  Sum_probs=43.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      .++..|++++|.|..   ++-. ...+++|+.|+|++| .+..++    .+..+++|+.|+|++|......+     ..+
T Consensus       611 ~~L~~L~L~~s~l~~---L~~~-~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp-----~si  677 (1153)
T PLN03210        611 ENLVKLQMQGSKLEK---LWDG-VHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELP-----SSI  677 (1153)
T ss_pred             cCCcEEECcCccccc---cccc-cccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccc-----hhh
Confidence            566777777777665   3222 245666666666665 355544    24556666666666665433221     123


Q ss_pred             hcCCccccccccc
Q 007072          233 QGCPKLEIYNSNF  245 (619)
Q Consensus       233 ~~lP~LeiLn~~~  245 (619)
                      ..+++|+.|+++.
T Consensus       678 ~~L~~L~~L~L~~  690 (1153)
T PLN03210        678 QYLNKLEDLDMSR  690 (1153)
T ss_pred             hccCCCCEEeCCC
Confidence            4555666555543

syringae 6; Provisional

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.01  E-value=6.1e-07  Score=102.11  Aligned_cols=83  Identities=24%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             cccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCC-Cchh------HH
Q 007072          278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPL-GESA------IE  350 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l-~~~~------~~  350 (619)
                      .|..|+|+||.+..+-.    ..+|++|+.||++.|-|.+-+  + +.-|+.+.+|..|++++|+.. .-+.      |-
T Consensus       233 ~L~~L~lrnN~l~tL~g----ie~LksL~~LDlsyNll~~hs--e-L~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl  305 (1096)
T KOG1859|consen  233 KLQLLNLRNNALTTLRG----IENLKSLYGLDLSYNLLSEHS--E-LEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYL  305 (1096)
T ss_pred             hheeeeecccHHHhhhh----HHhhhhhhccchhHhhhhcch--h-hhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHh
Confidence            47788899999888754    458999999999999887655  2 233666778888899888752 2221      22


Q ss_pred             HhhhcCccccccCccch
Q 007072          351 ILESLPTLCTLNGVTAS  367 (619)
Q Consensus       351 il~~lp~L~~LNg~~~s  367 (619)
                      -..+.|.=-.|+|+-+.
T Consensus       306 ~~~~a~~~f~LDgk~l~  322 (1096)
T KOG1859|consen  306 HKNSAPVKFKLDGKALG  322 (1096)
T ss_pred             ccccCCcceEecceecc
Confidence            22345555555666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.97  E-value=6.5e-06  Score=88.75  Aligned_cols=150  Identities=25%  Similarity=0.341  Sum_probs=98.0

Q ss_pred             CceeeeecccCCCCccccccccccCCC-CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKF-PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~-p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..+..|.+.++.|.+   ++. ....+ ++|+.|++++|.|..++   ..++.+++|+.|++++|++....+.      .
T Consensus       116 ~~l~~L~l~~n~i~~---i~~-~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~------~  182 (394)
T COG4886         116 TNLTSLDLDNNNITD---IPP-LIGLLKSNLKELDLSDNKIESLP---SPLRNLPNLKNLDLSFNDLSDLPKL------L  182 (394)
T ss_pred             cceeEEecCCccccc---Ccc-ccccchhhcccccccccchhhhh---hhhhccccccccccCCchhhhhhhh------h
Confidence            568889999999888   332 12334 48999999999999875   5678999999999999998877632      1


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ...++|+.|+++..+-              .+.|...    ..+..|+.|.+++|.+..++....   ++++|..|.+.+
T Consensus       183 ~~~~~L~~L~ls~N~i--------------~~l~~~~----~~~~~L~~l~~~~N~~~~~~~~~~---~~~~l~~l~l~~  241 (394)
T COG4886         183 SNLSNLNNLDLSGNKI--------------SDLPPEI----ELLSALEELDLSNNSIIELLSSLS---NLKNLSGLELSN  241 (394)
T ss_pred             hhhhhhhheeccCCcc--------------ccCchhh----hhhhhhhhhhhcCCcceecchhhh---hcccccccccCC
Confidence            2667777776653221              1122111    134457777777776555554444   566677777777


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |++....     ..+.++++|+.|++..+.
T Consensus       242 n~~~~~~-----~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         242 NKLEDLP-----ESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             ceeeecc-----chhccccccceecccccc
Confidence            7765532     346666777777776665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=2.6e-06  Score=88.28  Aligned_cols=108  Identities=27%  Similarity=0.349  Sum_probs=78.0

Q ss_pred             CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG  258 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~  258 (619)
                      .+.++..|++|||.|.++    .++.+|+.|++|-||-|.|....+-                                 
T Consensus        17 dl~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~pl---------------------------------   59 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLAPL---------------------------------   59 (388)
T ss_pred             HHHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccchhH---------------------------------
Confidence            456778899999999886    4778899999998888887766420                                 


Q ss_pred             cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072          259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                                     .                          .+.+|+.|-||.|.|.+++   .+..|+++|+|++|-+
T Consensus        60 ---------------~--------------------------rCtrLkElYLRkN~I~sld---EL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   60 ---------------Q--------------------------RCTRLKELYLRKNCIESLD---ELEYLKNLPSLRTLWL   95 (388)
T ss_pred             ---------------H--------------------------HHHHHHHHHHHhcccccHH---HHHHHhcCchhhhHhh
Confidence                           1                          3344445555555555444   2556778888888877


Q ss_pred             cCCCCCCc----hhHHHhhhcCccccccCccch
Q 007072          339 DIPGPLGE----SAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       339 d~p~~l~~----~~~~il~~lp~L~~LNg~~~s  367 (619)
                      +.|+=++.    |.-+++..||||+.|+.++++
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt  128 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT  128 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence            76654433    558999999999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.91  E-value=1.1e-06  Score=94.71  Aligned_cols=145  Identities=21%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             eeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCc
Q 007072          158 WLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK  237 (619)
Q Consensus       158 ~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~  237 (619)
                      -|+..+|+|.+   .|.+ +..+..|..|++.+|++...+   +..-.|+.|+.||.+.|-+....+.      ++++.+
T Consensus       141 dl~~~~N~i~s---lp~~-~~~~~~l~~l~~~~n~l~~l~---~~~i~m~~L~~ld~~~N~L~tlP~~------lg~l~~  207 (565)
T KOG0472|consen  141 DLDATNNQISS---LPED-MVNLSKLSKLDLEGNKLKALP---ENHIAMKRLKHLDCNSNLLETLPPE------LGGLES  207 (565)
T ss_pred             hhhcccccccc---CchH-HHHHHHHHHhhccccchhhCC---HHHHHHHHHHhcccchhhhhcCChh------hcchhh
Confidence            34556666666   3332 335667777788888877776   2333388888888888887776543      577788


Q ss_pred             ccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCc
Q 007072          238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ  317 (619)
Q Consensus       238 LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~  317 (619)
                      |+.|+++..+-..              .|     .+...+.|++|+.+.|.|.-+|.+..+  .+++|..||||+|++.+
T Consensus       208 L~~LyL~~Nki~~--------------lP-----ef~gcs~L~Elh~g~N~i~~lpae~~~--~L~~l~vLDLRdNklke  266 (565)
T KOG0472|consen  208 LELLYLRRNKIRF--------------LP-----EFPGCSLLKELHVGENQIEMLPAEHLK--HLNSLLVLDLRDNKLKE  266 (565)
T ss_pred             hHHHHhhhccccc--------------CC-----CCCccHHHHHHHhcccHHHhhHHHHhc--ccccceeeecccccccc
Confidence            8888776322210              01     111344556666666666666665555  56666666666666665


Q ss_pred             cchHHHHHHHhCCCCCccccccCC
Q 007072          318 NSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       318 i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      ++     ..+..+.+|+.|++++|
T Consensus       267 ~P-----de~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  267 VP-----DEICLLRSLERLDLSNN  285 (565)
T ss_pred             Cc-----hHHHHhhhhhhhcccCC
Confidence            55     12333455555555544

>PLN03150 hypothetical protein; Provisional

Probab=97.79  E-value=3.2e-05  Score=89.39  Aligned_cols=106  Identities=23%  Similarity=0.330  Sum_probs=69.6

Q ss_pred             CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072          182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY  261 (619)
Q Consensus       182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~  261 (619)
                      .++.|+|++|.|...-  ...+.+|++|+.|+|++|.+....+.     .+.                            
T Consensus       419 ~v~~L~L~~n~L~g~i--p~~i~~L~~L~~L~Ls~N~l~g~iP~-----~~~----------------------------  463 (623)
T PLN03150        419 FIDGLGLDNQGLRGFI--PNDISKLRHLQSINLSGNSIRGNIPP-----SLG----------------------------  463 (623)
T ss_pred             EEEEEECCCCCccccC--CHHHhCCCCCCEEECCCCcccCcCCh-----HHh----------------------------
Confidence            4788999999886432  35788999999999999987644321     011                            


Q ss_pred             CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC-ccchHHHHHHHhC-CCCCcccccc
Q 007072          262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE-QNSVRELLEVLKG-FPCLQSLGVD  339 (619)
Q Consensus       262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~-~i~~~~l~~~l~~-~~~L~sL~ld  339 (619)
                                   .+.+|+.|||++|.+....+..+.  +|++|+.|+|++|.+. .++     ..+.+ +.++..+.+.
T Consensus       464 -------------~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~N~l~g~iP-----~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        464 -------------SITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNGNSLSGRVP-----AALGGRLLHRASFNFT  523 (623)
T ss_pred             -------------CCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcCCcccccCC-----hHHhhccccCceEEec
Confidence                         356777788888888754444444  6888888888888775 333     22222 3455566666


Q ss_pred             CCC
Q 007072          340 IPG  342 (619)
Q Consensus       340 ~p~  342 (619)
                      .|.
T Consensus       524 ~N~  526 (623)
T PLN03150        524 DNA  526 (623)
T ss_pred             CCc
Confidence            554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.77  E-value=2.1e-05  Score=84.79  Aligned_cols=147  Identities=23%  Similarity=0.282  Sum_probs=100.2

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .++.|++++|.|..   ++ .-...+|+|+.|++++|.|.+++   .....+++|+.|++++|.+....+.      . .
T Consensus       141 nL~~L~l~~N~i~~---l~-~~~~~l~~L~~L~l~~N~l~~l~---~~~~~~~~L~~L~ls~N~i~~l~~~------~-~  206 (394)
T COG4886         141 NLKELDLSDNKIES---LP-SPLRNLPNLKNLDLSFNDLSDLP---KLLSNLSNLNNLDLSGNKISDLPPE------I-E  206 (394)
T ss_pred             hcccccccccchhh---hh-hhhhccccccccccCCchhhhhh---hhhhhhhhhhheeccCCccccCchh------h-h
Confidence            78999999999988   32 22368899999999999999987   3334899999999999999887631      1 2


Q ss_pred             CCc-ccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          235 CPK-LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       235 lP~-LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .++ |+.+.++.....              ..+.    ....+.++..|.+++|++..++...-   .+++|+.|++++|
T Consensus       207 ~~~~L~~l~~~~N~~~--------------~~~~----~~~~~~~l~~l~l~~n~~~~~~~~~~---~l~~l~~L~~s~n  265 (394)
T COG4886         207 LLSALEELDLSNNSII--------------ELLS----SLSNLKNLSGLELSNNKLEDLPESIG---NLSNLETLDLSNN  265 (394)
T ss_pred             hhhhhhhhhhcCCcce--------------ecch----hhhhcccccccccCCceeeeccchhc---cccccceeccccc
Confidence            333 666655432100              0111    11235566677777777776544333   5777888888888


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .|.+++      .+..+.+|+.|+++.+.
T Consensus       266 ~i~~i~------~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         266 QISSIS------SLGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccc------cccccCccCEEeccCcc
Confidence            888777      26677777777776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.77  E-value=1.1e-05  Score=88.47  Aligned_cols=61  Identities=38%  Similarity=0.387  Sum_probs=36.2

Q ss_pred             eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072          156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      ++++.+..|.|..    ..+....+.+|+.|+|.+|+|+.+..   .+..+++|++|+|++|.|....
T Consensus        74 l~~l~l~~n~i~~----~~~~l~~~~~l~~l~l~~n~i~~i~~---~l~~~~~L~~L~ls~N~I~~i~  134 (414)
T KOG0531|consen   74 LKELNLRQNLIAK----ILNHLSKLKSLEALDLYDNKIEKIEN---LLSSLVNLQVLDLSFNKITKLE  134 (414)
T ss_pred             HHhhccchhhhhh----hhcccccccceeeeeccccchhhccc---chhhhhcchheecccccccccc
Confidence            3444455555544    12223456677777777777766652   1566777777777777766654

>PLN03150 hypothetical protein; Provisional

Probab=97.71  E-value=4.4e-05  Score=88.32  Aligned_cols=106  Identities=18%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCccc-chhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLE-TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~-~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      .+..|.|++|++..  .+|. ...++++|+.|+|++|.|. .++   ..+.+|++|+.|+|++|.+....+..       
T Consensus       419 ~v~~L~L~~n~L~g--~ip~-~i~~L~~L~~L~Ls~N~l~g~iP---~~~~~l~~L~~LdLs~N~lsg~iP~~-------  485 (623)
T PLN03150        419 FIDGLGLDNQGLRG--FIPN-DISKLRHLQSINLSGNSIRGNIP---PSLGSITSLEVLDLSYNSFNGSIPES-------  485 (623)
T ss_pred             EEEEEECCCCCccc--cCCH-HHhCCCCCCEEECCCCcccCcCC---hHHhCCCCCCEEECCCCCCCCCCchH-------
Confidence            46778888888776  3333 3457888888888888876 333   46788888888888888876443211       


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccc-cCcccccCCCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH-NLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~-~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                                                             ...+.+|+.|||++|.+. .+|..+..  .+.++..+++.+
T Consensus       486 ---------------------------------------l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~~~~~~l~~~~  524 (623)
T PLN03150        486 ---------------------------------------LGQLTSLRILNLNGNSLSGRVPAALGG--RLLHRASFNFTD  524 (623)
T ss_pred             ---------------------------------------HhcCCCCCEEECcCCcccccCChHHhh--ccccCceEEecC
Confidence                                                   113667888888888887 55554332  235667788888


Q ss_pred             CC
Q 007072          313 NP  314 (619)
Q Consensus       313 N~  314 (619)
                      |+
T Consensus       525 N~  526 (623)
T PLN03150        525 NA  526 (623)
T ss_pred             Cc
Confidence            85

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.64  E-value=1.9e-05  Score=74.84  Aligned_cols=107  Identities=25%  Similarity=0.306  Sum_probs=71.3

Q ss_pred             CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072          182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY  261 (619)
Q Consensus       182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~  261 (619)
                      .+..|+|+.|.|..++.....+.+.-+|+..+|++|-+....+.     ...                            
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~k-----ft~----------------------------   74 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKK-----FTI----------------------------   74 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHH-----Hhh----------------------------
Confidence            34567778888887887778888888888889999976654321     111                            


Q ss_pred             CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                                   ..+.++.|||++|.|..+|.+ +.  .+|.|+.||+|.|+|....     +.+-.+.+|-.|+...+
T Consensus        75 -------------kf~t~t~lNl~~neisdvPeE-~A--am~aLr~lNl~~N~l~~~p-----~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   75 -------------KFPTATTLNLANNEISDVPEE-LA--AMPALRSLNLRFNPLNAEP-----RVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             -------------ccchhhhhhcchhhhhhchHH-Hh--hhHHhhhcccccCccccch-----HHHHHHHhHHHhcCCCC
Confidence                         123456777788888888877 54  6888888888888876544     33333455555554444


Q ss_pred             C
Q 007072          342 G  342 (619)
Q Consensus       342 ~  342 (619)
                      .
T Consensus       134 a  134 (177)
T KOG4579|consen  134 A  134 (177)
T ss_pred             c
Confidence            4

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.63  E-value=2.3e-05  Score=85.97  Aligned_cols=109  Identities=30%  Similarity=0.377  Sum_probs=79.2

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++.+|+|..   +.. ....+++|+.|+|++|+|+++.    .+..|+.|+.|++++|++.....       +
T Consensus        94 ~~~l~~l~l~~n~i~~---i~~-~l~~~~~L~~L~ls~N~I~~i~----~l~~l~~L~~L~l~~N~i~~~~~-------~  158 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK---IEN-LLSSLVNLQVLDLSFNKITKLE----GLSTLTLLKELNLSGNLISDISG-------L  158 (414)
T ss_pred             ccceeeeeccccchhh---ccc-chhhhhcchheecccccccccc----chhhccchhhheeccCcchhccC-------C
Confidence            4889999999999888   221 1567999999999999999986    66788889999999999988761       1


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      +                                         .+.+|+.++|++|.|..+.+. + ...+.+|+.|.+.+
T Consensus       159 ~-----------------------------------------~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  159 E-----------------------------------------SLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGG  195 (414)
T ss_pred             c-----------------------------------------cchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccC
Confidence            1                                         145566666666666666542 1 12556666666666


Q ss_pred             CCCCccc
Q 007072          313 NPLEQNS  319 (619)
Q Consensus       313 N~i~~i~  319 (619)
                      |.|..+.
T Consensus       196 n~i~~i~  202 (414)
T KOG0531|consen  196 NSIREIE  202 (414)
T ss_pred             Cchhccc
Confidence            6665555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.56  E-value=6e-05  Score=57.38  Aligned_cols=40  Identities=33%  Similarity=0.545  Sum_probs=32.7

Q ss_pred             CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072          181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      |+|+.|+|++|+|++++   +.+.+|++|+.|+|++|++....
T Consensus         1 ~~L~~L~l~~N~i~~l~---~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLP---PELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHG---GHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccC---chHhCCCCCCEEEecCCCCCCCc
Confidence            57899999999999887   35899999999999999988654

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=1.1e-05  Score=84.58  Aligned_cols=161  Identities=23%  Similarity=0.281  Sum_probs=111.6

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+||...|....+  ..+-+.|.+|+.|+|.|+.|.+  .++..+.+=.+|+.|||+++.=...   .-+..+++
T Consensus       185 sRlq~lDLS~s~it~stl--~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~---n~~~ll~~  257 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTL--HGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTE---NALQLLLS  257 (419)
T ss_pred             hhhHHhhcchhheeHHHH--HHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccch---hHHHHHHH
Confidence            346778899988887322  2234689999999999999986  4678899999999999999862222   23567889


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccC-CCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS-PAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~-~~~L~~L~~LnLs~  312 (619)
                      .|..|..||++.+...++..-.-               -.+.-+.|+.|||||+.-.--.+.+-. -...|+|.+||||+
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~---------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD  322 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVA---------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD  322 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHH---------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence            99999999998766554221000               011345788888888764322121100 12688899999998


Q ss_pred             CCCCccchHHHHHHHhCCCCCcccccc
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVD  339 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld  339 (619)
                      |..-.-   +..+.|.+|+.|++|.+.
T Consensus       323 ~v~l~~---~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  323 SVMLKN---DCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             ccccCc---hHHHHHHhcchheeeehh
Confidence            865433   457788888999988875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.50  E-value=9.6e-06  Score=92.66  Aligned_cols=111  Identities=26%  Similarity=0.302  Sum_probs=71.6

Q ss_pred             CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG  258 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~  258 (619)
                      -+|-|++|||++||+..++    .+++|++||.|||+.|.+....-  |   -..+|. |.+|+++..-..+        
T Consensus       185 ll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~--l---~~~gc~-L~~L~lrnN~l~t--------  246 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQ--L---SMVGCK-LQLLNLRNNALTT--------  246 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccc--c---chhhhh-heeeeecccHHHh--------
Confidence            4577888888888888753    78888888888888888765441  1   123344 6666665311110        


Q ss_pred             cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccc
Q 007072          259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNS  319 (619)
Q Consensus       259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~  319 (619)
                             -.    +...|.+|..||||+|.|.....-.| ...|.+|+.|+|-||++.=-+
T Consensus       247 -------L~----gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  247 -------LR----GIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             -------hh----hHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCccccCH
Confidence                   01    12247788888888888886655222 125778888888888885444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.47  E-value=5.5e-05  Score=57.61  Aligned_cols=39  Identities=36%  Similarity=0.560  Sum_probs=33.2

Q ss_pred             cccccccCccccccCcccccCCCCCCCCcccccCCCCCCccc
Q 007072          278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNS  319 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~  319 (619)
                      +|+.|+|++|+|..+|+.+.   +|++|+.|++++|+|.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~---~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELS---NLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGT---TCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHh---CCCCCCEEEecCCCCCCCc
Confidence            68999999999999988544   8999999999999999876

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.42  E-value=0.00011  Score=87.96  Aligned_cols=149  Identities=27%  Similarity=0.259  Sum_probs=100.8

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCc--ccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK--LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~Nk--L~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.+-+|.|..     ...+.++|+|++|-+.+|.  +..+.  ...+..||.|++||||+|.-....         
T Consensus       524 ~~rr~s~~~~~~~~-----~~~~~~~~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l~~L---------  587 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEH-----IAGSSENPKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSLSKL---------  587 (889)
T ss_pred             heeEEEEeccchhh-----ccCCCCCCccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCccCcC---------
Confidence            44555566666544     3345688899999999996  55544  667999999999999997633332         


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                                                       |..+.    .|-+|++|||++..|..||.++-   +|+.|.+||+..
T Consensus       588 ---------------------------------P~~I~----~Li~LryL~L~~t~I~~LP~~l~---~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  588 ---------------------------------PSSIG----ELVHLRYLDLSDTGISHLPSGLG---NLKKLIYLNLEV  627 (889)
T ss_pred             ---------------------------------ChHHh----hhhhhhcccccCCCccccchHHH---HHHhhheecccc
Confidence                                             22222    37788999999999999988766   688999999988


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCC-CCCchhHHHhhhcCccccccC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG-PLGESAIEILESLPTLCTLNG  363 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~-~l~~~~~~il~~lp~L~~LNg  363 (619)
                      +......    ...+..+++|+.|.+-... ..+....+.+..+.+|+.+..
T Consensus       628 ~~~l~~~----~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  628 TGRLESI----PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccccccc----cchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            8643322    4566778888888875443 222222444455555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.28  E-value=6e-05  Score=71.48  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=19.7

Q ss_pred             CCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccc
Q 007072          181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK  222 (619)
Q Consensus       181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~  222 (619)
                      ..|+..+|++|.+.+++  .+...+++.+++|||++|.+...
T Consensus        53 ~el~~i~ls~N~fk~fp--~kft~kf~t~t~lNl~~neisdv   92 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFP--KKFTIKFPTATTLNLANNEISDV   92 (177)
T ss_pred             ceEEEEecccchhhhCC--HHHhhccchhhhhhcchhhhhhc
Confidence            34444555555555554  33444445555555555554433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.25  E-value=0.00012  Score=73.19  Aligned_cols=87  Identities=23%  Similarity=0.253  Sum_probs=47.7

Q ss_pred             CCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhh
Q 007072          276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILE  353 (619)
Q Consensus       276 L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~  353 (619)
                      ++.|..|.|++|+|.++.+..-.  -+|+|+.|-|.+|.|..+.  + ..-+..||+|++|.+-.|+.  ...|.+-++-
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~--d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELG--D-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             ccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhh--h-cchhccCCccceeeecCCchhcccCceeEEEE
Confidence            33444444444444444443222  3555566666666555443  1 22356677777776554442  2334466777


Q ss_pred             hcCccccccCccch
Q 007072          354 SLPTLCTLNGVTAS  367 (619)
Q Consensus       354 ~lp~L~~LNg~~~s  367 (619)
                      .+|+|+.|+...+.
T Consensus       138 klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  138 KLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCcceEeehhhhh
Confidence            88888887666664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=8.2e-05  Score=77.48  Aligned_cols=85  Identities=24%  Similarity=0.387  Sum_probs=74.3

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      |-.++.|.||-|.|..  +.|   ...|++|..|-|..|.|++++++ ..|.+||+|++|||-.||-+.....+.-...+
T Consensus        40 Mp~lEVLsLSvNkIss--L~p---l~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL  113 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISS--LAP---LQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL  113 (388)
T ss_pred             cccceeEEeecccccc--chh---HHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence            7889999999999988  444   57999999999999999999975 69999999999999999988766556666788


Q ss_pred             hcCCccccccc
Q 007072          233 QGCPKLEIYNS  243 (619)
Q Consensus       233 ~~lP~LeiLn~  243 (619)
                      +.||+|+.|+.
T Consensus       114 R~LPnLkKLDn  124 (388)
T KOG2123|consen  114 RVLPNLKKLDN  124 (388)
T ss_pred             HHcccchhccC
Confidence            99999998875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.18  E-value=0.00036  Score=74.49  Aligned_cols=201  Identities=20%  Similarity=0.185  Sum_probs=134.6

Q ss_pred             CCCceeeeecccCCCCcc--ccccccccCCCCCccEeecCCCcc----cchh----hHHHHHhcccccceeecCCCcccc
Q 007072          152 GDGTVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL----ETVE----IIVQEVTKLKNLRALWLNNNPVLK  221 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~--~li~l~l~~~~p~L~~L~Ls~NkL----~~~~----~v~~~l~~L~~Lk~L~Ls~Npi~~  221 (619)
                      -++.++.|+||+|-|...  .-+...+ ...++|+..+|+.--.    ..++    -.+++|-++++|+.||||+|-+..
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L-~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVL-ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHH-hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            368899999999998872  1111122 2345888888776522    2222    234567779999999999999998


Q ss_pred             cccchhhhHHhhcCCccccccccccccc--ccc----cccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-
Q 007072          222 KCDHCMEDAILQGCPKLEIYNSNFTINF--GEW----ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-  294 (619)
Q Consensus       222 ~~~~~~~~~il~~lP~LeiLn~~~T~n~--~~~----~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-  294 (619)
                      ...+++. ..++.+-+|+-|.++..+--  +.-    +|-=|+  +....|        ....|+.+....|++.+-+. 
T Consensus       107 ~g~~~l~-~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk~~--------~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen  107 KGIRGLE-ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKKAA--------SKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             cchHHHH-HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhccC--------CCcceEEEEeeccccccccHH
Confidence            7765553 45566899998777654321  000    011111  111111        34578999999999987776 


Q ss_pred             ---cccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchh---HHHhhhcCccccccCccc
Q 007072          295 ---KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA---IEILESLPTLCTLNGVTA  366 (619)
Q Consensus       295 ---~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~---~~il~~lp~L~~LNg~~~  366 (619)
                         ..|.  ..|.|+.+.+..|.|..-.+--+...+.+||.|+-|++..|.+=..-+   .+.+..+|+|++||-.|-
T Consensus       176 ~~A~~~~--~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  176 ALAEAFQ--SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHHHHHH--hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence               3565  568999999999999887775567779999999999998887522211   566677777888766554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.00022  Score=73.51  Aligned_cols=65  Identities=29%  Similarity=0.379  Sum_probs=47.0

Q ss_pred             CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhhhcCccccccCccchh
Q 007072          301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILESLPTLCTLNGVTASK  368 (619)
Q Consensus       301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~~lp~L~~LNg~~~s~  368 (619)
                      ++|+|++|++++|.|..++.   ..-+..+++|.+|.+-....  +..|.-+++..+|+|..|+|.++..
T Consensus        89 ~~P~l~~l~ls~Nki~~lst---l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDLST---LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hCCceeEEeecCCccccccc---cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            45788888888887776552   22356667777777654433  5566689999999999999999874

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.08  E-value=0.00041  Score=81.22  Aligned_cols=156  Identities=21%  Similarity=0.191  Sum_probs=70.3

Q ss_pred             CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccc
Q 007072          181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV  260 (619)
Q Consensus       181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~  260 (619)
                      .+|+.|+++|...-+-.-+...=..||+|++|.++|=.+..-.    .-.+..+||+|..|+.+.|+-..          
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----F~~lc~sFpNL~sLDIS~TnI~n----------  187 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----FSQLCASFPNLRSLDISGTNISN----------  187 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----HHHHhhccCccceeecCCCCccC----------
Confidence            4556666666533333222333344566666665554332221    12334556666666555544321          


Q ss_pred             cCCCCCCccccCCCcCCcccccccCccccccCcc--cccCCCCCCCCcccccCCCCCCccc--hHHHHHHHhCCCCCccc
Q 007072          261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN--KAFSPAEMPSLSHLNIRGNPLEQNS--VRELLEVLKGFPCLQSL  336 (619)
Q Consensus       261 ~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~--~~f~~~~L~~L~~LnLs~N~i~~i~--~~~l~~~l~~~~~L~sL  336 (619)
                           -.    +-+.|.+|+.|-+.+=.+..-..  ..|   +|++|+.||+|...-....  +.....--..+|.|+.|
T Consensus       188 -----l~----GIS~LknLq~L~mrnLe~e~~~~l~~LF---~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL  255 (699)
T KOG3665|consen  188 -----LS----GISRLKNLQVLSMRNLEFESYQDLIDLF---NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL  255 (699)
T ss_pred             -----cH----HHhccccHHHHhccCCCCCchhhHHHHh---cccCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence                 01    11134555555554444443322  344   4666666666655544333  22222334445666666


Q ss_pred             cccCCCCCCchhHHHhhhcCcccccc
Q 007072          337 GVDIPGPLGESAIEILESLPTLCTLN  362 (619)
Q Consensus       337 ~ld~p~~l~~~~~~il~~lp~L~~LN  362 (619)
                      ++++.-.-...-..++..=|+|+.+.
T Consensus       256 DcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  256 DCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ecCCcchhHHHHHHHHHhCccHhhhh
Confidence            66543211111144444555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.08  E-value=0.00066  Score=79.53  Aligned_cols=186  Identities=16%  Similarity=0.191  Sum_probs=121.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      .+++.|+++|...-. .--+-.+...||.|++|.++|=.+..-+ -.+....+|+|..||+|+..+....       ..+
T Consensus       122 ~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~-------GIS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLS-------GIS  192 (699)
T ss_pred             HhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcH-------HHh
Confidence            568888888866222 1233345579999999999998887665 6789999999999999999999774       367


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc------cccCCCCCCCCcc
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN------KAFSPAEMPSLSH  307 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~------~~f~~~~L~~L~~  307 (619)
                      .+.+|++|.+..-.        |+.       -..+. ..-.|.+|+.||+|...-..-+.      +...  .||+|+.
T Consensus       193 ~LknLq~L~mrnLe--------~e~-------~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~--~LpeLrf  254 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLE--------FES-------YQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM--VLPELRF  254 (699)
T ss_pred             ccccHHHHhccCCC--------CCc-------hhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcc--cCccccE
Confidence            89999988775311        111       01111 11148899999999887766552      2223  6999999


Q ss_pred             cccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccccCccchhhhccCcc
Q 007072          308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTASKILEEGKH  375 (619)
Q Consensus       308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg~~~s~~~~~~~~  375 (619)
                      ||+||+.+...-.   ..++..=|+|+.+..-.-      ........+..+.+|.....+++..-+|
T Consensus       255 LDcSgTdi~~~~l---e~ll~sH~~L~~i~~~~~------~~~~~~~~~~i~~ln~at~~s~i~~L~~  313 (699)
T KOG3665|consen  255 LDCSGTDINEEIL---EELLNSHPNLQQIAALDC------LALSAVSSTEIRVLNTATLDSSIQALTY  313 (699)
T ss_pred             EecCCcchhHHHH---HHHHHhCccHhhhhhhhh------hccccccccCceeeeecchhHHHHHHHH
Confidence            9999998876443   334455566666542100      0011123345566666666665433333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.88  E-value=6.2e-05  Score=84.41  Aligned_cols=174  Identities=19%  Similarity=0.179  Sum_probs=80.4

Q ss_pred             hhhcccccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072          144 EIHNATEKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       144 ~~~~~~~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      +|..++ -+-......+|+.|....   +|-. +..|-.|+.|.|..|.|..++   ..+..|..|..||||-|.++...
T Consensus        66 pr~a~~-~~ltdt~~aDlsrNR~~e---lp~~-~~~f~~Le~liLy~n~~r~ip---~~i~~L~~lt~l~ls~NqlS~lp  137 (722)
T KOG0532|consen   66 PRGAAS-YDLTDTVFADLSRNRFSE---LPEE-ACAFVSLESLILYHNCIRTIP---EAICNLEALTFLDLSSNQLSHLP  137 (722)
T ss_pred             CCcccc-ccccchhhhhcccccccc---CchH-HHHHHHHHHHHHHhccceecc---hhhhhhhHHHHhhhccchhhcCC
Confidence            333333 333444445555555444   2211 233444555555566555554   34455666666677776666543


Q ss_pred             cchhhhHHhhcCCcccccccccccccccccc-------cccccccCCCCCCccccCCCcCCcccccccCccccccCcccc
Q 007072          224 DHCMEDAILQGCPKLEIYNSNFTINFGEWAL-------GFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA  296 (619)
Q Consensus       224 ~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l-------~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~  296 (619)
                      .+    .-.-.|+-|.+-|.+.|....++++       -++.+.+ +..|..    ...|.+|+.|+++.|++..+|.+.
T Consensus       138 ~~----lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsq----l~~l~slr~l~vrRn~l~~lp~El  208 (722)
T KOG0532|consen  138 DG----LCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQ----LGYLTSLRDLNVRRNHLEDLPEEL  208 (722)
T ss_pred             hh----hhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHH----hhhHHHHHHHHHhhhhhhhCCHHH
Confidence            21    0011233333334343333222210       0111110 011111    112344444555555555554443


Q ss_pred             cCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          297 FSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       297 f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      .   +|| |.+||.|.|+|..++     --|-++..|+.|-++.|+.
T Consensus       209 ~---~Lp-Li~lDfScNkis~iP-----v~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  209 C---SLP-LIRLDFSCNKISYLP-----VDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             h---CCc-eeeeecccCceeecc-----hhhhhhhhheeeeeccCCC
Confidence            3   233 555555555555544     3577888899998887763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.79  E-value=0.00057  Score=68.45  Aligned_cols=87  Identities=22%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...++||.+.+|.|..   |.+++...+|+|..|.|.+|.|..+.++ .-+..+|+|+.|-|-+||+++..  +.-...
T Consensus        62 ~l~rL~tLll~nNrIt~---I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~--~YR~yv  135 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITR---IDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKK--NYRLYV  135 (233)
T ss_pred             CccccceEEecCCccee---eccchhhhccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhccc--CceeEE
Confidence            45789999999999999   8889999999999999999999988754 57888999999999999999876  233345


Q ss_pred             hhcCCcccccccc
Q 007072          232 LQGCPKLEIYNSN  244 (619)
Q Consensus       232 l~~lP~LeiLn~~  244 (619)
                      +..+|+|++|+..
T Consensus       136 l~klp~l~~LDF~  148 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQ  148 (233)
T ss_pred             EEecCcceEeehh
Confidence            6779999999874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0014  Score=69.08  Aligned_cols=61  Identities=21%  Similarity=0.225  Sum_probs=53.0

Q ss_pred             ccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccc
Q 007072          183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFT  246 (619)
Q Consensus       183 L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T  246 (619)
                      +.-|.|.++.|-+...+...=....+++.|||.+|.|+.+.  + +-.|+.++|.|+.||++-.
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs--e-I~~ile~lP~l~~LNls~N  107 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS--E-IGAILEQLPALTTLNLSCN  107 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH--H-HHHHHhcCccceEeeccCC
Confidence            44577889999999988888899999999999999999987  2 3578999999999999743

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.0011  Score=68.51  Aligned_cols=88  Identities=26%  Similarity=0.371  Sum_probs=68.9

Q ss_pred             cCCCceeeeecccC--CCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhh
Q 007072          151 KGDGTVKWLELEDA--DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCME  228 (619)
Q Consensus       151 ~g~~~l~~L~Ls~~--~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~  228 (619)
                      --..+|+.|++|.|  .|...+.+   +..++|+|+.|+|++|+|..+. ....+..+++|..|+|.+|+.....  ..-
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~v---l~e~~P~l~~l~ls~Nki~~ls-tl~pl~~l~nL~~Ldl~n~~~~~l~--dyr  135 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEV---LAEKAPNLKVLNLSGNKIKDLS-TLRPLKELENLKSLDLFNCSVTNLD--DYR  135 (260)
T ss_pred             CCcchhhhhcccCCccccccccee---hhhhCCceeEEeecCCcccccc-ccchhhhhcchhhhhcccCCccccc--cHH
Confidence            33468899999999  55553332   3457799999999999998765 3457889999999999999998855  244


Q ss_pred             hHHhhcCCcccccccc
Q 007072          229 DAILQGCPKLEIYNSN  244 (619)
Q Consensus       229 ~~il~~lP~LeiLn~~  244 (619)
                      ..++.-+|+|.+|+-.
T Consensus       136 e~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  136 EKVFLLLPSLKYLDGC  151 (260)
T ss_pred             HHHHHHhhhhcccccc
Confidence            6788999999998843

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.59  E-value=0.00056  Score=77.00  Aligned_cols=130  Identities=24%  Similarity=0.276  Sum_probs=87.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+..|+|+.|++..   .|..+..  --|..|-+++|+|..+++.   +..+.+|..|+.+.|.+....++      +.
T Consensus       121 ~~lt~l~ls~NqlS~---lp~~lC~--lpLkvli~sNNkl~~lp~~---ig~~~tl~~ld~s~nei~slpsq------l~  186 (722)
T KOG0532|consen  121 EALTFLDLSSNQLSH---LPDGLCD--LPLKVLIVSNNKLTSLPEE---IGLLPTLAHLDVSKNEIQSLPSQ------LG  186 (722)
T ss_pred             hHHHHhhhccchhhc---CChhhhc--CcceeEEEecCccccCCcc---cccchhHHHhhhhhhhhhhchHH------hh
Confidence            345567777777666   4433322  2366777888888887743   34777888888888877766543      56


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      ++-+|..|++.....              .+.|-.+.     -=.|..||+|+|+|..||-++-   .|+.|+.|-|-+|
T Consensus       187 ~l~slr~l~vrRn~l--------------~~lp~El~-----~LpLi~lDfScNkis~iPv~fr---~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  187 YLTSLRDLNVRRNHL--------------EDLPEELC-----SLPLIRLDFSCNKISYLPVDFR---KMRHLQVLQLENN  244 (722)
T ss_pred             hHHHHHHHHHhhhhh--------------hhCCHHHh-----CCceeeeecccCceeecchhhh---hhhhheeeeeccC
Confidence            666777666542111              11221111     1147899999999999987655   7999999999999


Q ss_pred             CCCccc
Q 007072          314 PLEQNS  319 (619)
Q Consensus       314 ~i~~i~  319 (619)
                      ++.+=+
T Consensus       245 PLqSPP  250 (722)
T KOG0532|consen  245 PLQSPP  250 (722)
T ss_pred             CCCCCh
Confidence            998766

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.50  E-value=0.0033  Score=67.35  Aligned_cols=176  Identities=25%  Similarity=0.277  Sum_probs=125.5

Q ss_pred             CCCCccEeecCCCcc--cchhhHHHHHhcccccceeecCCCccccccc-----chhhhHHhhcCCccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRALWLNNNPVLKKCD-----HCMEDAILQGCPKLEIYNSNFTINFGE  251 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL--~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~-----~~~~~~il~~lP~LeiLn~~~T~n~~~  251 (619)
                      ....++.|+|+||-+  +-...++..+.+.++|+.-++|+=.-...-.     -.+.-..+-.+|.|+++|+|  .|+  
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS--DNA--  103 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS--DNA--  103 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc--ccc--
Confidence            456889999999954  4566778889999999999988654333221     12333556778999999987  232  


Q ss_pred             ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccc-----c------CCCCCCCCcccccCCCCCCccch
Q 007072          252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA-----F------SPAEMPSLSHLNIRGNPLEQNSV  320 (619)
Q Consensus       252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~-----f------~~~~L~~L~~LnLs~N~i~~i~~  320 (619)
                               ++.+.+..+........+|+.|-|.||.|...-.+.     |      +..+=+.|+.+.+..|.+.+-+.
T Consensus       104 ---------~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen  104 ---------FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             ---------cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence                     333334444333445778999999999998554432     1      11245889999999999999887


Q ss_pred             HHHHHHHhCCCCCccccccCCCCCCch--h-HHHhhhcCccccccCccch
Q 007072          321 RELLEVLKGFPCLQSLGVDIPGPLGES--A-IEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       321 ~~l~~~l~~~~~L~sL~ld~p~~l~~~--~-~~il~~lp~L~~LNg~~~s  367 (619)
                      -.+...+..++.|+.+.+..|+....-  . ..-++.||+|+.||=.|-.
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT  224 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence            777888999999999999988753221  1 5567889999999777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.0011  Score=69.81  Aligned_cols=159  Identities=18%  Similarity=0.132  Sum_probs=110.6

Q ss_pred             CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccc
Q 007072          181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV  260 (619)
Q Consensus       181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~  260 (619)
                      ..|+.|||+.-.|+-- ..-..++.+.+||.|-|.||.+..--    . +-...=.+|+.+|++.++-.++.++.     
T Consensus       185 sRlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I----~-~~iAkN~~L~~lnlsm~sG~t~n~~~-----  253 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPI----V-NTIAKNSNLVRLNLSMCSGFTENALQ-----  253 (419)
T ss_pred             hhhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHH----H-HHHhccccceeeccccccccchhHHH-----
Confidence            3588999999888743 34568999999999999999976431    2 22334468888998877655543321     


Q ss_pred             cCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072          261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI  340 (619)
Q Consensus       261 ~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~  340 (619)
                                .....+..|.+||||-|.+..-.-.+.-..=-++|.+|||+|..- .+..+++.-+..+||+|..|++..
T Consensus       254 ----------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD  322 (419)
T KOG2120|consen  254 ----------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSD  322 (419)
T ss_pred             ----------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeecccc
Confidence                      111236688899999998763221111111358899999999842 122235566788999999999999


Q ss_pred             CCCCCchhHHHhhhcCccccc
Q 007072          341 PGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       341 p~~l~~~~~~il~~lp~L~~L  361 (619)
                      ...+++.-..++..++-|+.|
T Consensus       323 ~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  323 SVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             ccccCchHHHHHHhcchheee
Confidence            998888557888888888776

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.98  E-value=0.01  Score=65.59  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=39.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCC-CccEeecCCC-cccchhhHHHHHhcccccceeecCCCc
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFP-DLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNP  218 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p-~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Np  218 (619)
                      ..+.+|++++|.|..   +|     .+| +|+.|.+++| .|+.++..   +  .++|+.|+|++|+
T Consensus        52 ~~l~~L~Is~c~L~s---LP-----~LP~sLtsL~Lsnc~nLtsLP~~---L--P~nLe~L~Ls~Cs  105 (426)
T PRK15386         52 RASGRLYIKDCDIES---LP-----VLPNELTEITIENCNNLTTLPGS---I--PEGLEKLTVCHCP  105 (426)
T ss_pred             cCCCEEEeCCCCCcc---cC-----CCCCCCcEEEccCCCCcccCCch---h--hhhhhheEccCcc
Confidence            457799999999888   44     243 6999999885 77777632   2  2589999999984

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.77  E-value=0.0047  Score=74.29  Aligned_cols=83  Identities=24%  Similarity=0.273  Sum_probs=69.2

Q ss_pred             ceeeeecccCC--CCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          155 TVKWLELEDAD--IGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       155 ~l~~L~Ls~~~--I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      ++.+|-+..|.  +..   ++...+..+|.|..|||++| .+..+|   ..++.|-+||.|+|++..+.....+      
T Consensus       546 ~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~LryL~L~~t~I~~LP~~------  613 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRYLDLSDTGISHLPSG------  613 (889)
T ss_pred             ccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhcccccCCCccccchH------
Confidence            57888888886  555   78888899999999999999 778776   6788999999999999999876543      


Q ss_pred             hhcCCccccccccccccc
Q 007072          232 LQGCPKLEIYNSNFTINF  249 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~  249 (619)
                      ++.|-.|..||+.+|+..
T Consensus       614 l~~Lk~L~~Lnl~~~~~l  631 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRL  631 (889)
T ss_pred             HHHHHhhheecccccccc
Confidence            677778888998887764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.54  E-value=0.015  Score=63.28  Aligned_cols=81  Identities=25%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             ccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccc
Q 007072          172 LSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFG  250 (619)
Q Consensus       172 i~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~  250 (619)
                      +...+...+|+|+.|.++++ .+.... .....+.+++|+.|+|+++.................+++|+.++++.+.+.+
T Consensus       179 ~~~~l~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  179 ILLRLLSSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             HHHHHHhhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence            33444456888888888888 665533 4578888888888888874211111111223355566667666666655544


Q ss_pred             ccc
Q 007072          251 EWA  253 (619)
Q Consensus       251 ~~~  253 (619)
                      +.+
T Consensus       258 d~~  260 (482)
T KOG1947|consen  258 DIG  260 (482)
T ss_pred             chh
Confidence            333

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=95.34  E-value=0.015  Score=65.67  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=36.3

Q ss_pred             CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCC
Q 007072          178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN  217 (619)
Q Consensus       178 ~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~N  217 (619)
                      .++|.+.+|+|+.|+|.+++-++..-..-|+|+.|+|++|
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            3889999999999999999988888888999999999988

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.24  E-value=0.022  Score=51.07  Aligned_cols=125  Identities=15%  Similarity=0.223  Sum_probs=47.4

Q ss_pred             cccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccc
Q 007072          173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEW  252 (619)
Q Consensus       173 ~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~  252 (619)
                      +...+.++++|+.+.+.. .+..++  ...+.++++|+.+.+.++ +....     ...+..+++|+.+.+..  ....+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~--~~~F~~~~~l~~i~~~~~-~~~i~-----~~~F~~~~~l~~i~~~~--~~~~i   72 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIG--ENAFSNCTSLKSINFPNN-LTSIG-----DNAFSNCKSLESITFPN--NLKSI   72 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE---TTTTTT-TT-SEEEESST-TSCE------TTTTTT-TT-EEEEETS--TT-EE
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeC--hhhccccccccccccccc-ccccc-----eeeeecccccccccccc--ccccc
Confidence            344555666666666653 344444  345666666666666654 33332     22344454454444321  00000


Q ss_pred             cccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCC
Q 007072          253 ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC  332 (619)
Q Consensus       253 ~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~  332 (619)
                                   +   ...+....+|+.+++..+ +..++...|.  +. +|+.+.+.+ .+..+.    ...|.+|++
T Consensus        73 -------------~---~~~F~~~~~l~~i~~~~~-~~~i~~~~f~--~~-~l~~i~~~~-~~~~i~----~~~F~~~~~  127 (129)
T PF13306_consen   73 -------------G---DNAFSNCTNLKNIDIPSN-ITEIGSSSFS--NC-NLKEINIPS-NITKIE----ENAFKNCTK  127 (129)
T ss_dssp             -----------------TTTTTT-TTECEEEETTT--BEEHTTTTT--T--T--EEE-TT-B-SS--------GGG----
T ss_pred             -------------c---cccccccccccccccCcc-ccEEchhhhc--CC-CceEEEECC-CccEEC----Ccccccccc
Confidence                         0   000112456666676654 6677777775  55 667777664 444444    344566655


Q ss_pred             C
Q 007072          333 L  333 (619)
Q Consensus       333 L  333 (619)
                      |
T Consensus       128 l  128 (129)
T PF13306_consen  128 L  128 (129)
T ss_dssp             -
T ss_pred             C
Confidence            5

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.13  E-value=0.043  Score=57.64  Aligned_cols=84  Identities=15%  Similarity=0.046  Sum_probs=45.1

Q ss_pred             cccccccCccccccCccc----ccCCCCCCCCcccccCCCCCCccchHHHHHH-HhCCCCCccccccCCCCCC-chh--H
Q 007072          278 SVTSLDLSNRCIHNLVNK----AFSPAEMPSLSHLNIRGNPLEQNSVRELLEV-LKGFPCLQSLGVDIPGPLG-ESA--I  349 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~----~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~-l~~~~~L~sL~ld~p~~l~-~~~--~  349 (619)
                      .|+..+...|++.+-|..    .|.  .=.+|+.+.+-.|.|..-.+..|..+ +..+.+|+-|++..|.+-. .+.  .
T Consensus       158 ~Le~vicgrNRlengs~~~~a~~l~--sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         158 KLEVVICGRNRLENGSKELSAALLE--SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CceEEEeccchhccCcHHHHHHHHH--hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            455666666666655442    221  11466666677776665543333222 5566677777776665411 111  4


Q ss_pred             HHhhhcCccccccC
Q 007072          350 EILESLPTLCTLNG  363 (619)
Q Consensus       350 ~il~~lp~L~~LNg  363 (619)
                      +.+..+++|++|+-
T Consensus       236 ~al~~W~~lrEL~l  249 (388)
T COG5238         236 DALCEWNLLRELRL  249 (388)
T ss_pred             HHhcccchhhhccc
Confidence            55566666777643

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=94.99  E-value=0.025  Score=49.49  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=36.8

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccc
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDF  479 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~  479 (619)
                      -+++-|+||-.||+++.....  .+     ...-.++-++||++|||+|-||
T Consensus        72 ~~~~~iNHsc~pN~~~~~~~~--~~-----~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       72 NIARFINHSCEPNCELLFVEV--NG-----DSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             cHHHeeCCCCCCCEEEEEEEE--CC-----CcEEEEEECCCcCCCCEEeecC
Confidence            488999999999999865433  33     3467888899999999999987

Putative methyl transferase, based on outlier plant homologues

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.52  E-value=0.023  Score=50.96  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=49.6

Q ss_pred             HHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccc
Q 007072          202 EVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTS  281 (619)
Q Consensus       202 ~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~  281 (619)
                      ++.++++|+.+.+.++ +....     ...+.++++|+.+.+.-  +...+.     .           ..+..+.+|+.
T Consensus         7 ~F~~~~~l~~i~~~~~-~~~I~-----~~~F~~~~~l~~i~~~~--~~~~i~-----~-----------~~F~~~~~l~~   62 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT-IKKIG-----ENAFSNCTSLKSINFPN--NLTSIG-----D-----------NAFSNCKSLES   62 (129)
T ss_dssp             TTTT-TT--EEEETST---EE------TTTTTT-TT-SEEEESS--TTSCE------T-----------TTTTT-TT-EE
T ss_pred             HHhCCCCCCEEEECCC-eeEeC-----hhhcccccccccccccc--cccccc-----e-----------eeeeccccccc
Confidence            5677888999888753 44443     33466666676555432  111000     0           01123446777


Q ss_pred             cccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcccccc
Q 007072          282 LDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD  339 (619)
Q Consensus       282 LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld  339 (619)
                      +.+.+ .+..++...|.  .+++|+.+.+..| +..+.    ...+.++ .|+.+.+.
T Consensus        63 i~~~~-~~~~i~~~~F~--~~~~l~~i~~~~~-~~~i~----~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   63 ITFPN-NLKSIGDNAFS--NCTNLKNIDIPSN-ITEIG----SSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EEETS-TT-EE-TTTTT--T-TTECEEEETTT--BEEH----TTTTTT--T--EEE-T
T ss_pred             ccccc-ccccccccccc--ccccccccccCcc-ccEEc----hhhhcCC-CceEEEEC
Confidence            77765 67777777776  6778888888665 55555    3346666 66666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.50  E-value=0.024  Score=61.64  Aligned_cols=165  Identities=24%  Similarity=0.256  Sum_probs=80.5

Q ss_pred             CCceeeeecccC--CCCccccccccccCCCCCccEeecCCCc-ccchhhHHHHHhcccccceeecCCCc-ccccccchhh
Q 007072          153 DGTVKWLELEDA--DIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNP-VLKKCDHCME  228 (619)
Q Consensus       153 ~~~l~~L~Ls~~--~I~~~~li~l~l~~~~p~L~~L~Ls~Nk-L~~~~~v~~~l~~L~~Lk~L~Ls~Np-i~~~~~~~~~  228 (619)
                      ...++.|+++++  .+.....-...+...+++|+.|+|+++. +++.. +.....++++|+.|.+++++ +...    ..
T Consensus       213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~~l~~~c~~L~~L~l~~c~~lt~~----gl  287 (482)
T KOG1947|consen  213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LSALASRCPNLETLSLSNCSNLTDE----GL  287 (482)
T ss_pred             CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HHHHHhhCCCcceEccCCCCccchh----HH
Confidence            345666666652  2232211222345566777777777776 44443 33344456777777766666 3322    24


Q ss_pred             hHHhhcCCccccccccccccccccc----ccccccccCCCCCCcccc-CCCcCCcccccccCcccc---ccCcccccCCC
Q 007072          229 DAILQGCPKLEIYNSNFTINFGEWA----LGFCGEVYDKDNPSSLCL-RDRPLQSVTSLDLSNRCI---HNLVNKAFSPA  300 (619)
Q Consensus       229 ~~il~~lP~LeiLn~~~T~n~~~~~----l~fc~~~~~~~~p~~l~~-~~~~L~~L~~LdLS~N~I---~~Lp~~~f~~~  300 (619)
                      ..+...+|+|+.|+++.....++-+    +.+|.+.-.      +.. .......++.+.+++...   ..+......  
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~------l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~--  359 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRE------LKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILR--  359 (482)
T ss_pred             HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhh------hhhhhcCCCccHHHHHHHHhhccCchhHhHHHHh--
Confidence            5666667777777766444432211    122321100      000 000122344444444333   122222222  


Q ss_pred             CCCCCcccccCCCCCCccchHHHHHHHhCCCCC
Q 007072          301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL  333 (619)
Q Consensus       301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L  333 (619)
                      .++.|+.+.|..+.+.+..   +...+.+|+.|
T Consensus       360 ~~~~l~~~~l~~~~~~~~~---~~~~l~gc~~l  389 (482)
T KOG1947|consen  360 SCPKLTDLSLSYCGISDLG---LELSLRGCPNL  389 (482)
T ss_pred             cCCCcchhhhhhhhccCcc---hHHHhcCCccc
Confidence            6777778887777744433   13456777777

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=93.54  E-value=0.046  Score=61.84  Aligned_cols=88  Identities=27%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             ccCCCceeeeecccCCCCccccccccccCCCCCccEeecCCC--cccchhhHHHHHhc--ccccceeecCCCcccccc--
Q 007072          150 EKGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN--KLETVEIIVQEVTK--LKNLRALWLNNNPVLKKC--  223 (619)
Q Consensus       150 ~~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N--kL~~~~~v~~~l~~--L~~Lk~L~Ls~Npi~~~~--  223 (619)
                      +.....+..+.|++|++..-.-. ..++...|+|..|+|++|  ++.+..    .+++  ..-|+.|+|-|||++...  
T Consensus       214 ~~n~p~i~sl~lsnNrL~~Ld~~-sslsq~apklk~L~LS~N~~~~~~~~----el~K~k~l~Leel~l~GNPlc~tf~~  288 (585)
T KOG3763|consen  214 EENFPEILSLSLSNNRLYHLDAL-SSLSQIAPKLKTLDLSHNHSKISSES----ELDKLKGLPLEELVLEGNPLCTTFSD  288 (585)
T ss_pred             hcCCcceeeeecccchhhchhhh-hHHHHhcchhheeecccchhhhcchh----hhhhhcCCCHHHeeecCCccccchhh
Confidence            34467888899999998871111 125679999999999999  777765    4444  445789999999999855  


Q ss_pred             cchhhhHHhhcCCcccccc
Q 007072          224 DHCMEDAILQGCPKLEIYN  242 (619)
Q Consensus       224 ~~~~~~~il~~lP~LeiLn  242 (619)
                      ..+....|...||.|-.|+
T Consensus       289 ~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  289 RSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             hHHHHHHHHHhcchheeec
Confidence            2267778899999999887

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.29  E-value=0.089  Score=58.37  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=26.2

Q ss_pred             CCCCccEeecCCCcccchhhHHHHHhcc-cccceeecCCCcc
Q 007072          179 KFPDLQALSLCGNKLETVEIIVQEVTKL-KNLRALWLNNNPV  219 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L-~~Lk~L~Ls~Npi  219 (619)
                      .|+++..|++++|.|+.+|       .+ ++|+.|.++++.-
T Consensus        50 ~~~~l~~L~Is~c~L~sLP-------~LP~sLtsL~Lsnc~n   84 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP-------VLPNELTEITIENCNN   84 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC-------CCCCCCcEEEccCCCC
Confidence            3578889999999888886       23 3699999987653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.73  E-value=0.067  Score=34.68  Aligned_cols=18  Identities=22%  Similarity=0.370  Sum_probs=15.1

Q ss_pred             cccccccCccccccCccc
Q 007072          278 SVTSLDLSNRCIHNLVNK  295 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~  295 (619)
                      +|+.||||+|+|+.+|+.
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            478899999999988876

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.48  E-value=0.049  Score=59.91  Aligned_cols=87  Identities=28%  Similarity=0.397  Sum_probs=61.6

Q ss_pred             CceeeeecccCC-CCccccccccc-cCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          154 GTVKWLELEDAD-IGDDMLLSLNL-SSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       154 ~~l~~L~Ls~~~-I~~~~li~l~l-~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +.++.|.+.++. +.+   -++-. .++||+|+.|++.+++.-+-...-.+-+.+++|+.|+|-.++...-   ...+++
T Consensus       138 g~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~---~~Lk~l  211 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD---VSLKYL  211 (483)
T ss_pred             cccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH---HHHHHH
Confidence            788889999988 555   34433 3689999999999994333333344667789999999988664432   245667


Q ss_pred             hhcCCcccccccccc
Q 007072          232 LQGCPKLEIYNSNFT  246 (619)
Q Consensus       232 l~~lP~LeiLn~~~T  246 (619)
                      -++||+|+-+|++..
T Consensus       212 a~gC~kL~~lNlSwc  226 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWC  226 (483)
T ss_pred             HHhhhhHHHhhhccC
Confidence            788999988888653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.40  E-value=0.13  Score=34.33  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=17.9

Q ss_pred             CCcccccccCccccccCcccccC
Q 007072          276 LQSVTSLDLSNRCIHNLVNKAFS  298 (619)
Q Consensus       276 L~~L~~LdLS~N~I~~Lp~~~f~  298 (619)
                      |.+|+.|+|++|.|..+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35678888888888888887774

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.40  E-value=0.13  Score=34.33  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=17.9

Q ss_pred             CCcccccccCccccccCcccccC
Q 007072          276 LQSVTSLDLSNRCIHNLVNKAFS  298 (619)
Q Consensus       276 L~~L~~LdLS~N~I~~Lp~~~f~  298 (619)
                      |.+|+.|+|++|.|..+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35678888888888888887774

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.12  E-value=0.14  Score=51.73  Aligned_cols=83  Identities=22%  Similarity=0.260  Sum_probs=49.6

Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      ++.+++|+.+.+++.+...+|+|.+-++                                         -.++|+.|+|+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-----------------------------------------~~~~L~~L~ls  159 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGG-----------------------------------------LAPSLQDLDLS  159 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcc-----------------------------------------cccchheeecc
Confidence            4455556666666666677777777663                                         23455555555


Q ss_pred             CC-CCCccchHHHHHHHhCCCCCccccccCCCC---CCchhHHHhhhcCccc
Q 007072          312 GN-PLEQNSVRELLEVLKGFPCLQSLGVDIPGP---LGESAIEILESLPTLC  359 (619)
Q Consensus       312 ~N-~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~---l~~~~~~il~~lp~L~  359 (619)
                      +| .|.+-.    ...|..|++|+-|.+.....   ++.....+-+.||++.
T Consensus       160 gC~rIT~~G----L~~L~~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~  207 (221)
T KOG3864|consen  160 GCPRITDGG----LACLLKLKNLRRLHLYDLPYVANLELVQRQLEEALPKCD  207 (221)
T ss_pred             CCCeechhH----HHHHHHhhhhHHHHhcCchhhhchHHHHHHHHHhCcccc
Confidence            55 333322    44577778888887765544   3334467777788774

>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.77  E-value=0.45  Score=52.60  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             eEEEEecC-CCC--CCC--------CeEeeccceeccchHHHHhhh-----cCcchHHHHHhhhccc
Q 007072           61 RRLVLDSQ-SMP--KES--------NVFLVDHAWTFRLSDAFSQLQ-----EVPGLAQRMASLMCVD  111 (619)
Q Consensus        61 ~~~vv~~~-~l~--~~~--------~vflidh~~tf~~~~a~~~L~-----~vp~L~~Rm~~lm~~~  111 (619)
                      +++.+++| ..+  -|+        +||.|||+||-+...++.+|+     ++++++-||++||+++
T Consensus        81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~t~~~le~~v~~e~~e~l~~~s~l~G~~  147 (631)
T KOG2155|consen   81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDETVEKLETSVEKEEAEHLKKISSLTGNL  147 (631)
T ss_pred             eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccHHHHHhhccchhhHHHHHHHHHHhhCCC
Confidence            56677777 444  244        599999999999999999999     9999999999999976

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.62  E-value=0.23  Score=54.78  Aligned_cols=183  Identities=18%  Similarity=0.153  Sum_probs=103.3

Q ss_pred             ceeeeecccCC-CCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          155 TVKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       155 ~l~~L~Ls~~~-I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      +|+.|.+.+|. |.+  .--+.++.+|++|.+|+|..| .|++.- ....-.++++|+.|+||-++-...+   .++.+.
T Consensus       165 nIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~~-Lk~la~gC~kL~~lNlSwc~qi~~~---gv~~~~  238 (483)
T KOG4341|consen  165 NIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDVS-LKYLAEGCRKLKYLNLSWCPQISGN---GVQALQ  238 (483)
T ss_pred             chhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHHH-HHHHHHhhhhHHHhhhccCchhhcC---cchHHh
Confidence            56667777776 444  222344568899999998886 666653 2236678899999999888866553   345667


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCcc-ccccCcccccC-CCCCCCCccccc
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR-CIHNLVNKAFS-PAEMPSLSHLNI  310 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N-~I~~Lp~~~f~-~~~L~~L~~LnL  310 (619)
                      +++.+|+.+.++...-.+.-+++.-. .+              ..-+..+||..| .|+..  ++|. .-....|+.|..
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~-~~--------------~~~i~~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~  301 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAA-AY--------------CLEILKLNLQHCNQLTDE--DLWLIACGCHALQVLCY  301 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHh-cc--------------ChHhhccchhhhccccch--HHHHHhhhhhHhhhhcc
Confidence            77888777766632222211111111 00              111334443333 22221  1221 114677888888


Q ss_pred             CCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchh-HHHhhhcCcccccc
Q 007072          311 RGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-IEILESLPTLCTLN  362 (619)
Q Consensus       311 s~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~-~~il~~lp~L~~LN  362 (619)
                      ++..-  ++-.-+..+-.++++|+-|.+..-..++..- ..+-..++.|..++
T Consensus       302 s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~  352 (483)
T KOG4341|consen  302 SSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD  352 (483)
T ss_pred             cCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence            77643  3322345567788888888877655444433 34445566665554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.04  E-value=0.18  Score=30.82  Aligned_cols=16  Identities=38%  Similarity=0.551  Sum_probs=7.8

Q ss_pred             cccccccCccccccCc
Q 007072          278 SVTSLDLSNRCIHNLV  293 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp  293 (619)
                      +|+.|+|++|++..+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4666666666666554

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.90  E-value=0.078  Score=59.90  Aligned_cols=63  Identities=24%  Similarity=0.337  Sum_probs=43.6

Q ss_pred             ccccccCccccccCcc----cccCCCCC-CCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          279 VTSLDLSNRCIHNLVN----KAFSPAEM-PSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       279 L~~LdLS~N~I~~Lp~----~~f~~~~L-~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +..|++++|++...--    ..++  .+ +.|++|+++.|.|.+-...++...+..++.++.|.+..|..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~--~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLS--VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhc--ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            5568888887774411    1222  33 56688888888888877777888888888888888776653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.69  E-value=1  Score=47.72  Aligned_cols=171  Identities=18%  Similarity=0.189  Sum_probs=101.2

Q ss_pred             CCceeeeecccCCCCcc-ccccccccCCCCCccEeecCCCccc--------chhhHHHHHhcccccceeecCCCcccccc
Q 007072          153 DGTVKWLELEDADIGDD-MLLSLNLSSKFPDLQALSLCGNKLE--------TVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~-~li~l~l~~~~p~L~~L~Ls~NkL~--------~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      ++++..++||+|-|... |-.--....+-.+|+..+++.--..        ++--..+++-+||+|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            67888888888888772 1111111224566666666554221        22233456677888888888888776655


Q ss_pred             cchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCccc-----cc-
Q 007072          224 DHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK-----AF-  297 (619)
Q Consensus       224 ~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~-----~f-  297 (619)
                      +..+.+.|                                          +.-..|+.|-|++|++-.+-..     .| 
T Consensus       109 ~e~L~d~i------------------------------------------s~~t~l~HL~l~NnGlGp~aG~rigkal~~  146 (388)
T COG5238         109 PEELGDLI------------------------------------------SSSTDLVHLKLNNNGLGPIAGGRIGKALFH  146 (388)
T ss_pred             chHHHHHH------------------------------------------hcCCCceeEEeecCCCCccchhHHHHHHHH
Confidence            33222221                                          1234567777888877655432     11 


Q ss_pred             -----CCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCc--h--hHHHhhhcCccccccCcc
Q 007072          298 -----SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGE--S--AIEILESLPTLCTLNGVT  365 (619)
Q Consensus       298 -----~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~--~--~~~il~~lp~L~~LNg~~  365 (619)
                           +..+=|.|+...+..|.+..-+.......|..=.+|+.+.+..|+.=..  .  ..-=++-+.+|..|+-.|
T Consensus       147 la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD  223 (388)
T COG5238         147 LAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD  223 (388)
T ss_pred             HHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence                 2336788999999999998888555445555556888888887764111  1  122234566666654443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=85.67  E-value=0.42  Score=29.23  Aligned_cols=15  Identities=33%  Similarity=0.689  Sum_probs=6.3

Q ss_pred             CccEeecCCCcccch
Q 007072          182 DLQALSLCGNKLETV  196 (619)
Q Consensus       182 ~L~~L~Ls~NkL~~~  196 (619)
                      +|+.|+|++|+|+++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555443

...

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]

Probab=82.56  E-value=0.91  Score=54.81  Aligned_cols=41  Identities=24%  Similarity=0.362  Sum_probs=34.5

Q ss_pred             cccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccc
Q 007072          433 VRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL  480 (619)
Q Consensus       433 I~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~  480 (619)
                      |.||-.|||+|++|  .-+|     .+=-+||+.+||..|||+|-||=
T Consensus      1254 inhscKPNc~~qkw--SVNG-----~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1254 INHSCKPNCEMQKW--SVNG-----EYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred             cccccCCCCccccc--cccc-----eeeeeeeecCCCCCCceEEEecc
Confidence            56999999999988  2233     66668999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	619
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 43/182 (23%)

Query: 171 LLSLNLS-------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
           L  L++                  +L+ L L  + +ET +    ++  L +L++L L+ N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 218 PVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
                    ++    + CP+LE   +  +   +   +                       
Sbjct: 387 EP-----LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ------------------- 422

Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
            L  +  L+LS+  +     + F    +P+L HLN++GN   + ++ +    L+    L+
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLE 479

Query: 335 SL 336
            L
Sbjct: 480 IL 481

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 50/210 (23%)

Query: 170 MLLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNN 216
            L SLNLS             + P L+ L L   +L+      Q     L  L+ L L++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV--KDAQSPFQNLHLLKVLNLSH 434

Query: 217 NPVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
           + +         + +  G P L+   +  ++F     +                      
Sbjct: 435 SLL-----DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------------- 474

Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
             L  +  L LS   + ++   AF+   +  ++H+++  N L  +S+            L
Sbjct: 475 --LGRLEILVLSFCDLSSIDQHAFTS--LKMMNHVDLSHNRLTSSSIEA-------LSHL 523

Query: 334 QSLGVDIPG-PLGESAIEILESLPTLCTLN 362
           + + +++    +      +L  L    T+N
Sbjct: 524 KGIYLNLASNHISIILPSLLPILSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 34/143 (23%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
           S+  +L  L L   ++    I          L  L L  NP++      M +  L G   
Sbjct: 54  SRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLTANPLIF-----MAETALSGPKA 106

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
           L+          +I                 +   L       +++ SL L +  I ++ 
Sbjct: 107 LKHLFFIQTGISSI-----------------DFIPL----HNQKTLESLYLGSNHISSIK 145

Query: 294 NKAFSPAEMPSLSHLNIRGNPLE 316
                P     L  L+ + N + 
Sbjct: 146 LPKGFP--TEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 38/161 (23%)

Query: 180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
               + L    N L    I     ++L NL  L L    +       + +   Q   +L+
Sbjct: 32  PNSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYW-----IHEDTFQSQHRLD 84

Query: 240 I----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
                 N    +                   ++L       +++  L      I ++   
Sbjct: 85  TLVLTANPLIFM-----------------AETAL----SGPKALKHLFFIQTGISSIDFI 123

Query: 296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
                   +L  L +  N +        L        L+ L
Sbjct: 124 PLHN--QKTLESLYLGSNHISSIK----LPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 42/204 (20%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           L  L                    L++L L  N + +  I + +    + L+ L   NN 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS--IKLPKGFPTEKLKVLDFQNNA 164

Query: 219 VLKKCDHCMEDAILQGCPKLEIY-NSNF--TINFGEWALGFCGEVYDKDNPSSLC----L 271
           +       M    LQ    L +  N N    I  G +       +      + L     L
Sbjct: 165 IHYLSKEDMSS--LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 272 RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP----------------- 314
           ++  +QS+      +    ++    F      S+  +N++ +                  
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 315 --LEQNSVRELLEVLKGFPCLQSL 336
             L    + EL   L G   L+ L
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKL 306

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 47/214 (21%), Positives = 81/214 (37%), Gaps = 29/214 (13%)

Query: 152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRA 211
               V+ ++L ++ I    L  +   S+   LQ LSL G +L     IV  + K  NL  
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVR 146

Query: 212 LWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL 271
           L L+        +  ++  +L  C +L+  N           L +C +            
Sbjct: 147 LNLSGCSGFS--EFALQ-TLLSSCSRLDELN-----------LSWCFDF---TEKHVQVA 189

Query: 272 RDRPLQSVTSLDLSNRCIHNLVNKAFSP--AEMPSLSHLNIRGNP-LEQNSVRELLEVLK 328
                +++T L+LS     NL     S      P+L HL++  +  L+ +  +E  +   
Sbjct: 190 VAHVSETITQLNLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--- 245

Query: 329 GFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN 362
               LQ L +     +    +  L  +PTL TL 
Sbjct: 246 -LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 40/202 (19%), Positives = 75/202 (37%), Gaps = 28/202 (13%)

Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           L LE   + D ++ +L   +K  +L  L+L G    +   +   ++    L  L L+   
Sbjct: 123 LSLEGLRLSDPIVNTL---AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179

Query: 219 VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQS 278
                +  ++ A+      +        +N      G+   +      S L    R   +
Sbjct: 180 DFT--EKHVQVAVAHVSETIT------QLNLS----GYRKNLQK----SDLSTLVRRCPN 223

Query: 279 VTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337
           +  LDLS      L N  F    ++  L HL++             L  L   P L++L 
Sbjct: 224 LVHLDLS-DS-VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTL- 277

Query: 338 VDIPGPLGESAIEIL-ESLPTL 358
             + G + +  +++L E+LP L
Sbjct: 278 -QVFGIVPDGTLQLLKEALPHL 298

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 38/181 (20%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           +  + LS            +  P LQ L L    L+ V+        L+NL  L L+NN 
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
            +   +    D +L+G  KLE   + ++N    +     G                    
Sbjct: 492 -IANIN----DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG------------ 534

Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
           L  +  L+L +     +  + F    +  L  +++  N L  N++     V      L+S
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKD--LFELKIIDLGLNNL--NTLPA--SVFNNQVSLKS 588

Query: 336 L 336
           L
Sbjct: 589 L 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 50/212 (23%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           L  L+LS            +  P L+   L  N ++   +    +  L N+R L L  + 
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSF 307

Query: 219 VLKKCDHC----MEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCL 271
             +         ++D   Q    LE   + +++                      +    
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI----------------KSNMFT- 350

Query: 272 RDRPLQSVTSLDLSN--RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG 329
               L ++  L LSN    +  L N+ F       L  LN+  N + +       +    
Sbjct: 351 ---GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES----DAFSW 403

Query: 330 FPCLQSLGV---DIPGPLGESAIEILESLPTL 358
              L+ L +   +I   L       LE++  +
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 25/160 (15%)

Query: 173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP---VLKKCDHCMED 229
           S +      +L  L L  N +    I    +  L+ L  L L +N    + K  +     
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIAN--INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 230 AILQGCPKLEIYN--SNFTINFGEWALGFCGEVYDKDNPSSLCLRD-----------RPL 276
             L+G   L I N  SN              E+        + L                
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL------KIIDLGLNNLNTLPASVFNNQ 583

Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
            S+ SL+L    I ++  K F PA   +L+ L++R NP +
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPA-FRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 41/181 (22%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           L++L+LS             +  +LQ L L  NK++ ++    ++    +L+ L L++N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
            +K+              +L    + N     +                    LCL    
Sbjct: 183 -IKE----FSPGCFHAIGRLFGLFLNNVQLGPSL----------------TEKLCLELA- 220

Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
             S+ +L LSN  +    N  F   +  +L+ L++  N L         +     P L+ 
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEY 276

Query: 336 L 336
            
Sbjct: 277 F 277

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 52/212 (24%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKN--LRALWLNN 216
           L  LN+             +   +L+ LSL  +      +  +    L +  L  L L  
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 217 NPVLKKCDHCMEDAILQGCPKLEI----YNS-NFTINFGEWALGFCGEVYDKDNPSSLCL 271
           N + K     +E         LE+     N     +   EW                   
Sbjct: 391 NKISK-----IESDAFSWLGHLEVLDLGLNEIGQELTGQEW------------------- 426

Query: 272 RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP 331
             R L+++  + LS      L   +F+   +PSL  L +R   L   +V       +   
Sbjct: 427 --RGLENIFEIYLSYNKYLQLTRNSFA--LVPSLQRLMLRRVAL--KNVDSSPSPFQPLR 480

Query: 332 CLQSLGVDIPG-PLGESAIEILESLPTLCTLN 362
            L  L  D+    +     ++LE L  L  L+
Sbjct: 481 NLTIL--DLSNNNIANINDDMLEGLEKLEILD 510

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 44/161 (27%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           +  LNL+            +++  L +L +  N +    +  +   KL  L+ L L +N 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLNLQHNE 84

Query: 219 VLKKCDHCMEDAILQGCPKLEI---YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
           +       + D     C  L      +++                  K   +        
Sbjct: 85  L-----SQLSDKTFAFCTNLTELHLMSNSIQ----------------KIKNNPF----VK 119

Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
            +++ +LDLS+  + +          + +L  L +  N ++
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQ--LENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 65/183 (35%)

Query: 171 LLSLNLS-------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN 217
           L  L+L                  ++  + L  NK     +       + +L+ L L   
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ--LTRNSFALVPSLQRLMLRRV 464

Query: 218 PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
                         L+                               +PS       PL+
Sbjct: 465 A-------------LKNVDS---------------------------SPSPFQ----PLR 480

Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL----EQNSVRELLEVLKGFPCL 333
           ++T LDLSN  I N+ +       +  L  L+++ N L    +  +    +  LKG   L
Sbjct: 481 NLTILDLSNNNIANINDDMLEG--LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 334 QSL 336
             L
Sbjct: 539 HIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 43/181 (23%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           L  LNL             +   +L  L L  N ++   I      K KNL  L L++N 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNG 132

Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
           +        +         L+   + N+          L            SSL      
Sbjct: 133 L-----SSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIF-------ANSSL------ 173

Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
                 L+LS+  I       F    +  L  L +    L  +   +L   L     +++
Sbjct: 174 ----KKLELSSNQIKEFSPGCF--HAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRN 226

Query: 336 L 336
           L
Sbjct: 227 L 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 43/158 (27%)

Query: 171 LLSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
               + S             ++  L+L  N+L    +     T+   L +L +  N + K
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISK 63

Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
                +E  + Q  P L++    +N    +                 +  +         
Sbjct: 64  -----LEPELCQKLPMLKVLNLQHNELSQL-----------------SDKTF----AFCT 97

Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
           ++T L L +  I  + N  F      +L  L++  N L
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVK--QKNLITLDLSHNGL 133

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 48/183 (26%)

Query: 171 LLSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
           L  + ++            P L  L L GNK+  V+     +  L NL  L L+ N +  
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSI-- 228

Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
                +++  L   P L       N    +                  P  L       +
Sbjct: 229 ---SAVDNGSLANTPHLRELHLNNNKLVKV------------------PGGL----ADHK 263

Query: 278 SVTSLDLSNRCIHNLVNKAFSPAE----MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
            +  + L N  I  + +  F P        S S +++  NP++   ++      +     
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVR 321

Query: 334 QSL 336
            ++
Sbjct: 322 AAV 324

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 44/175 (25%)

Query: 180 FPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKL 238
              LQ L +  N++  V    + V   L  +  + L  NP+       +E+   QG  KL
Sbjct: 120 PKTLQELRVHENEITKVR---KSVFNGLNQMIVVELGTNPLK---SSGIENGAFQGMKKL 173

Query: 239 E---IYNSNFTINFGEWALGFCGEVYDKDNPSS---LCLRD-----------RPLQSVTS 281
               I ++N T             +  +  P S   L L             + L ++  
Sbjct: 174 SYIRIADTNIT------------TI-PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 282 LDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
           L LS   I  + N + +    P L  L++  N L      ++   L     +Q +
Sbjct: 221 LGLSFNSISAVDNGSLAN--TPHLRELHLNNNKL-----VKVPGGLADHKYIQVV 268

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 39/198 (19%)

Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE- 239
             L+ L+L    L ++    + ++ L  L  L L +  +     + + D   +   +L+ 
Sbjct: 152 NSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRHLNI-----NAIRDYSFKRLYRLKV 204

Query: 240 --IYNSNFTINFGEWALGFCG--EVYDKDN-----PSSLCLRDRPLQSVTSLDLSNRCIH 290
             I +  +        L       +          P       R L  +  L+LS   I 
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV---RHLVYLRFLNLSYNPIS 261

Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD------IPGPL 344
            +         +  L  + + G  L    V       +G   L+ L V       +    
Sbjct: 262 TIEGSMLHE--LLRLQEIQLVGGQLA--VVEP--YAFRGLNYLRVLNVSGNQLTTLEE-- 313

Query: 345 GESAIEILESLPTLCTLN 362
                 +  S+  L TL 
Sbjct: 314 -----SVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 34/137 (24%)

Query: 183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE--- 239
           L +LS+    L  V  +   V  L  LR L L+ NP+       +E ++L    +L+   
Sbjct: 226 LTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYNPI-----STIEGSMLHELLRLQEIQ 278

Query: 240 IYNSNFT-INFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS 298
           +       +        F G                 L  +  L++S   +  L    F 
Sbjct: 279 LVGGQLAVVEPYA----FRG-----------------LNYLRVLNVSGNQLTTLEESVFH 317

Query: 299 PAEMPSLSHLNIRGNPL 315
              + +L  L +  NPL
Sbjct: 318 S--VGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 30/182 (16%), Positives = 51/182 (28%), Gaps = 50/182 (27%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           L +L L             +   +L  L +  NK+  +         L NL++L + +N 
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDND 139

Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
           +       +      G   LE       +  +I                           
Sbjct: 140 L-----VYISHRAFSGLNSLEQLTLEKCNLTSIPTE----ALSH---------------- 174

Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
            L  +  L L +  I+ + + +F    +  L  L I   P         L  L     L 
Sbjct: 175 -LHGLIVLRLRHLNINAIRDYSFKR--LYRLKVLEISHWPYLDTMTPNCLYGLN----LT 227

Query: 335 SL 336
           SL
Sbjct: 228 SL 229

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 34/163 (20%), Positives = 53/163 (32%), Gaps = 38/163 (23%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
           + FP L+ L L  N +  VE        L NLR L L +N  LK     +   +  G   
Sbjct: 53  ASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNR-LKL----IPLGVFTGLSN 105

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
           L       N    +                          + L ++ SL++ +  +  + 
Sbjct: 106 LTKLDISENKIVIL-----------------LDYMF----QDLYNLKSLEVGDNDLVYIS 144

Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
           ++AFS   + SL  L +    L         E L     L  L
Sbjct: 145 HRAFSG--LNSLEQLTLEKCNLTSIPT----EALSHLHGLIVL 181

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 20/183 (10%)

Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
           ++L+L +  + ++ L +      +P LQ L L  N L +++   + +  LKNL +L ++ 
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 217 NPVLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
           N      D C      Q   K+    + ++   +           EV D  N ++L    
Sbjct: 397 NTFHPMPDSC------QWPEKMRFLNLSSTGIRVVKTCIPQTL--EVLDVSN-NNLDSFS 447

Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
             L  +  L +S   +  L + +      P L  + I  N L   SV +   +      L
Sbjct: 448 LFLPRLQELYISRNKLKTLPDASL----FPVLLVMKISRNQL--KSVPD--GIFDRLTSL 499

Query: 334 QSL 336
           Q +
Sbjct: 500 QKI 502

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 27/166 (16%)

Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
             +       P L+ L L  N L       Q      +L+ L L+ N            +
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN----GVITM--SS 390

Query: 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH 290
              G  +LE       ++F    L    E     +  +L            LD+S+    
Sbjct: 391 NFLGLEQLE------HLDFQHSNLKQMSEFSVFLSLRNL----------IYLDISHTHTR 434

Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
              N  F+   + SL  L + GN  ++N +    ++      L  L
Sbjct: 435 VAFNGIFN--GLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFL 475

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 47/181 (25%)

Query: 171 LLSLNLSS-----------KFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNP 218
           L  L+LS                L+ L    + L+   +    V   L+NL  L +++  
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTH 432

Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
                     + I  G   LE   +  ++F  NF                          
Sbjct: 433 T-----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-------------------TE 468

Query: 276 LQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS 335
           L+++T LDLS   +  L   AF+   + SL  LN+  N L   SV +   +      LQ 
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMASNQL--KSVPD--GIFDRLTSLQK 522

Query: 336 L 336
           +
Sbjct: 523 I 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 17/184 (9%)

Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT----KLKNLRAL 212
           +   L   +  ++  L     S    L  L++   +L  ++  + ++      L N+ + 
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
            L +   +++      +   Q    LE+ N  F   F    L     +    N       
Sbjct: 288 SLVSVT-IERVKDFSYNFGWQ---HLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
           +  L S+  LDLS   +      + S     SL +L++  N         ++ +   F  
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--------GVITMSSNFLG 394

Query: 333 LQSL 336
           L+ L
Sbjct: 395 LEQL 398

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 31/142 (21%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
             FP+LQ L L   +++T  I       L +L  L L  NP+       +      G   
Sbjct: 49  FSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQS-----LALGAFSGLSS 101

Query: 238 LEIYN--SNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL-VN 294
           L+          +   + +G                    L+++  L++++  I +  + 
Sbjct: 102 LQKLVAVETNLASLENFPIG-------------------HLKTLKELNVAHNLIQSFKLP 142

Query: 295 KAFSPAEMPSLSHLNIRGNPLE 316
           + FS   + +L HL++  N ++
Sbjct: 143 EYFSN--LTNLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 14/184 (7%)

Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT----KLKNLRAL 212
           +   L   +  ++  L     S    L  L++   +L  ++  + ++      L N+ + 
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
            L +  +        + +   G   LE+ N  F   F    L     +    N       
Sbjct: 288 SLVSVTIE----RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFS 342

Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
           +  L S+  LDLS   +      + S     SL +L++  N +       +     G   
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQ 397

Query: 333 LQSL 336
           L+ L
Sbjct: 398 LEHL 401

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 35/166 (21%)

Query: 171 LLSLNLSSKF-----PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH 225
             S    + F     P L+ L L  N L       Q      +L+ L L+ N V+     
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---- 387

Query: 226 CMEDAILQGCPKLEI---YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
               +   G  +LE     +SN                               L+++  L
Sbjct: 388 --MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-------------------SLRNLIYL 426

Query: 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
           D+S+       N  F+   + SL  L + GN  ++N + ++   L+
Sbjct: 427 DISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELR 470

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 35/169 (20%)

Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
           L  L+LS                L+ L    + L+ +         L+NL  L +++   
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHT 433

Query: 220 LKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVY---------DKDNPS 267
                    + I  G   LE   +  ++F  NF          +          ++ +P+
Sbjct: 434 -----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 268 SLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
           +       L S+  L++S+    +L    +    + SL  L+   N + 
Sbjct: 489 AF----NSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 21/158 (13%), Positives = 35/158 (22%), Gaps = 26/158 (16%)

Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
           +   ++     +L  L +                 L +L  L +  N   +         
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPD---- 464

Query: 231 ILQGCPKLEI----YNSNFTINFGEWALGFCGEVYD---KDN------PSSLCLRDRPLQ 277
           I      L                  A      +       N              + L 
Sbjct: 465 IFTELRNLTFLDLSQC-QLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY----KCLN 518

Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
           S+  LD S   I     +        SL+ LN+  N  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 27/174 (15%), Positives = 46/174 (26%), Gaps = 41/174 (23%)

Query: 171 LLSLNLSS----KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC 226
            + LN            + L L  N L    +          L+ L L+   +       
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQT----- 66

Query: 227 MEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
           +ED   Q    L       N   ++                    +       L S+  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSL-----------------ALGAF----SGLSSLQKL 105

Query: 283 DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
                 + +L N       + +L  LN+  N +      +L E       L+ L
Sbjct: 106 VAVETNLASLENFPIGH--LKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 35/165 (21%)

Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
                   L+ L L  N + T+         L+ L  L   ++          E ++   
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHS----NLKQMSEFSVFLS 419

Query: 235 CPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
              L    I +++  + F      F G                 L S+  L ++      
Sbjct: 420 LRNLIYLDISHTHTRVAFNGI---FNG-----------------LSSLEVLKMAGNSFQE 459

Query: 292 LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
                    E+ +L+ L++    LEQ S             LQ L
Sbjct: 460 NFLPDI-FTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 33/143 (23%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
             FP+LQ L L   +++T  I       L +L  L L  NP+       +      G   
Sbjct: 49  FSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQS-----LALGAFSGLSS 101

Query: 238 LEI---YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL-V 293
           L+      +N                        +      L+++  L++++  I +  +
Sbjct: 102 LQKLVAVETNLA----------------SLENFPI----GHLKTLKELNVAHNLIQSFKL 141

Query: 294 NKAFSPAEMPSLSHLNIRGNPLE 316
            + FS   + +L HL++  N ++
Sbjct: 142 PEYFS--NLTNLEHLDLSSNKIQ 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 45/193 (23%)

Query: 153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRA 211
            G    L+L    I +  L  +        L  L L  NK++ +E    E   +   L  
Sbjct: 166 PGAFDGLKLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIE---LEDLLRYSKLYR 221

Query: 212 LWLNNNPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPS 267
           L L +N +       +E+  L   P L       N    +                  P+
Sbjct: 222 LGLGHNQI-----RMIENGSLSFLPTLRELHLDNNKLSRV------------------PA 258

Query: 268 SLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP----AEMPSLSHLNIRGNPLEQNSVREL 323
            L      L+ +  + L    I  +    F P     +    + +++  NP+    V+  
Sbjct: 259 GL----PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 324 LEVLKGFPCLQSL 336
                 F C+   
Sbjct: 315 T-----FRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 50/191 (26%)

Query: 171 LLSLNLSS---------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
           L  L +S              L  L +  N++  V       + L+N+  + +  NP+  
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPL-- 159

Query: 222 KCDHCMEDAILQGCP--KLEIYNSNFTINFGEWALGFCGEVYDKDNPSS---LCLRD--- 273
             +   E     G     L I  +  T                KD P +   L L     
Sbjct: 160 -ENSGFEPGAFDGLKLNYLRISEAKLT-------------GIPKDLPETLNELHLDHNKI 205

Query: 274 --------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE 325
                        +  L L +  I  + N + S   +P+L  L++  N L       +  
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNKLS-----RVPA 258

Query: 326 VLKGFPCLQSL 336
            L     LQ +
Sbjct: 259 GLPDLKLLQVV 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 56/268 (20%)

Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRAL 212
            ++ L+++  ++ D     L         Q + L    L     + I   +     L  L
Sbjct: 4   DIQSLDIQCEELSDARWAEL--LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 213 WLNNNPV-----------LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY 261
            L +N +           L+    C     +Q   KL + N   T   G         + 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTP-SCK----IQ---KLSLQNCCLT---GAGCGVLSSTL- 109

Query: 262 DKDNPS--SLCLRD----------------RPLQSVTSLDLSNRCIHNLVNKAFSPA--E 301
            +  P+   L L D                 P   +  L L    +     +  +     
Sbjct: 110 -RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPC-LQSLGVD---IPGPLGESAI-EILESLP 356
            P    L +  N + +  VR L + LK  PC L++L ++   +        +  I+ S  
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKA 227

Query: 357 TLCTLNGVTASKILEEG-KHVIDSMLQP 383
           +L  L  + ++K+ + G   +   +L P
Sbjct: 228 SLRELA-LGSNKLGDVGMAELCPGLLHP 254

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 35/236 (14%), Positives = 82/236 (34%), Gaps = 30/236 (12%)

Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
           +++ L L    +GD     L   L      L+ L +    +  +    + + +   ++L+
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 211 ALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPS--S 268
            L L  N +  +    + + +L+   +LE        +F          V    N     
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVL-AQNRFLLE 345

Query: 269 LCLRD----------------RPLQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNI 310
           L + +                +P   +  L L++  + +    + +       SL  L++
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 311 RGNPLEQNSVRELLEVLKGFPC-LQSLGVDIP--GPLGESAI-EILESLPTLCTLN 362
             N L    + +L+E ++   C L+ L +         E  +  + +  P+L  ++
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 13/210 (6%)

Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQAL-SLCGNKLETVEIIVQEVTKLKNLRALW 213
             + L   D D  +  +  +      P L A+  L   K++    +        NL++L 
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE 199

Query: 214 LNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
           + +       D  +ED +    P LE       +  G    GF G++             
Sbjct: 200 IISGG---LPDSVVEDILGSDLPNLE----KLVLYVGVEDYGFDGDMNV----FRPLFSK 248

Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAE-MPSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
               ++  L + +    N+V + F  ++ +P L  ++I    L     R LL+ +     
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 333 LQSLGVDIPGPLGESAIEILESLPTLCTLN 362
           L+ + +       E   E+ +SLP    ++
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 57/169 (33%)

Query: 174 LNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ 233
             L+ +F +L+ LS     L ++  +     KL  L+ L L++N V         + + +
Sbjct: 35  EGLTDEFEELEFLSTINVGLTSIANL----PKLNKLKKLELSDNRVSG-----GLEVLAE 85

Query: 234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
            CP L                                           L+LS   I +L 
Sbjct: 86  KCPNLTH-----------------------------------------LNLSGNKIKDL- 103

Query: 294 NKAFSP-AEMPSLSHLNIRGNPL-EQNSVRELLEVLKGFPCLQSL-GVD 339
                P  ++ +L  L++    +   N  RE   V K  P L  L G D
Sbjct: 104 -STIEPLKKLENLKSLDLFNCEVTNLNDYRE--NVFKLLPQLTYLDGYD 149

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
           K LEL D  +         L+ K P+L  L+L GNK++ +  I + + KL+NL++L L N
Sbjct: 67  KKLELSDNRVSG---GLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFN 122

Query: 217 NPVLKKCDHCMEDAILQGCPKLEI 240
             V    D+   + + +  P+L  
Sbjct: 123 CEVTNLNDY--RENVFKLLPQLTY 144

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
            L         + L  N+LE ++I +  + ++ +L+ L LN N        C  D     
Sbjct: 395 TLPKINLTANLIHLSENRLENLDI-LYFLLRVPHLQILILNQNRF----SSCSGDQTPSE 449

Query: 235 CPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
            P LE   +  +   +    W    C +V+              L  +  L L++  +++
Sbjct: 450 NPSLEQLFLGENMLQL---AWETELCWDVF------------EGLSHLQVLYLNHNYLNS 494

Query: 292 LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
           L    FS   + +L  L++  N L   S  +L   L+
Sbjct: 495 LPPGVFSH--LTALRGLSLNSNRLTVLSHNDLPANLE 529

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 28/182 (15%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
              L LS                 LQ L L       + I  +    L NLR L L ++ 
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSK 84

Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYD---KDNP-SSLC 270
           +       +     QG   L      +         +        +       N   SL 
Sbjct: 85  IYF-----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 271 LRD--RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
           L      L S+ S+D S+  I  +      P +  +LS  ++  N L      +  + + 
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 329 GF 330
            F
Sbjct: 200 PF 201

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 40/171 (23%)

Query: 173 SLNLSS---KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED 229
             NL+         + L L  N + TV         L+ L+ L L +          ++ 
Sbjct: 13  FCNLTQVPQVLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLT----IDK 66

Query: 230 AILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLS 285
              +  P L I     +  + ++       F G                 L  +  L L 
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPD----AFQG-----------------LFHLFELRLY 105

Query: 286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
              + + V K      + +L+ L++  N +        L +   F  L SL
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------LYLHPSFGKLNSL 150

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 30/149 (20%)

Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
           L  L    + P LQ L L  N+  +     Q  ++  +L  L+L  N +    +  +   
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 231 ILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN 286
           + +G   L++    +N   ++  G +                       L ++  L L++
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVF---------------------SHLTALRGLSLNS 513

Query: 287 RCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
             +  L +         +L  L+I  N L
Sbjct: 514 NRLTVLSHNDLP----ANLEILDISRNQL 538

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 36/189 (19%), Positives = 61/189 (32%), Gaps = 59/189 (31%)

Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWL 214
            V+ L L++     +      L+++F +L+ LSL    L +V  +     KL  L+ L L
Sbjct: 25  AVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL----PKLPKLKKLEL 78

Query: 215 NNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
           + N +         D + +  P L                                    
Sbjct: 79  SENRIFG-----GLDMLAEKLPNLTH---------------------------------- 99

Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPL-EQNSVRELLEVLKGFPC 332
                  L+LS   + ++      P  ++  L  L++    +   N  RE   V K  P 
Sbjct: 100 -------LNLSGNKLKDI--STLEPLKKLECLKSLDLFNCEVTNLNDYRE--SVFKLLPQ 148

Query: 333 LQSL-GVDI 340
           L  L G D 
Sbjct: 149 LTYLDGYDR 157

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 45/180 (25%)

Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
           L SL L+             P L  L L  N L              +LR L L+ N   
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN--- 386

Query: 221 KKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL 276
                 +  A   G  +L+     +++   +                   S+       L
Sbjct: 387 ---GAIIMSANFMGLEELQHLDFQHSTLKRVT----------------EFSAFL----SL 423

Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
           + +  LD+S        +  F    + SL+ L + GN  + N++  +         L  L
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLG--LTSLNTLKMAGNSFKDNTLSNVFANTTN---LTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 13/166 (7%)

Query: 171 LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
           +   ++     D+                + +   L N+ A+ L     +K  +   +  
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHF 307

Query: 231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH 290
             Q    L I        F    L F   +    N  S+  +   L S++ LDLS   + 
Sbjct: 308 KWQ---SLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363

Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
                ++S     SL HL++  N     S          F  L+ L
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMS--------ANFMGLEEL 401

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 34/175 (19%), Positives = 56/175 (32%), Gaps = 41/175 (23%)

Query: 166 IGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH 225
            G      L  +S    L+ L L  N      I+      L+ L+ L   ++ +      
Sbjct: 365 SGCCSYSDLGTNS----LRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTL----KR 413

Query: 226 CMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSL 282
             E +      KL    I  +N  I+F                          L S+ +L
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDF----------------DGIFL----GLTSLNTL 453

Query: 283 DLS-NRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
            ++ N    N ++  F+     +L+ L++    LEQ S      V      LQ L
Sbjct: 454 KMAGNSFKDNTLSNVFAN--TTNLTFLDLSKCQLEQISW----GVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 41/172 (23%)

Query: 171 LLSLNLSS-----------KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
           L  L+LS               +LQ L    + L+ V         L+ L  L ++    
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYTNT 436

Query: 220 LKKCDHCMEDAILQGCPKLEIYN--SNFTINFGEWALGFCGEVYDKDNPS--SLCLRD-- 273
                    D I  G   L       N   +     +         +  +   L L    
Sbjct: 437 -----KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF-------ANTTNLTFLDLSKCQ 484

Query: 274 ---------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
                      L  +  L++S+  +  L +  ++   + SLS L+   N +E
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ--LYSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 45/161 (27%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           LL L++S                 L  L + GN  +    +        NL  L L+   
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLDLSKCQ 484

Query: 219 VLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
           +       +   +     +L++    +N+   ++   +                      
Sbjct: 485 L-----EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY---------------------N 518

Query: 275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
            L S+++LD S   I              SL+  N+  N +
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHF--PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 23/178 (12%), Positives = 48/178 (26%), Gaps = 46/178 (25%)

Query: 172 LSLNLSSK---------FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
           ++     +             + + L  N L+   +     +    L+ L L+   +   
Sbjct: 14  ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIET- 70

Query: 223 CDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQS 278
               +ED    G   L       N   +                  +P S       L S
Sbjct: 71  ----IEDKAWHGLHHLSNLILTGNPIQSF-----------------SPGSF----SGLTS 105

Query: 279 VTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
           + +L      + +L +       + +L  LN+  N +      +L         L  +
Sbjct: 106 LENLVAVETKLASLESFPIGQ--LITLKKLNVAHNFI---HSCKLPAYFSNLTNLVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 35/144 (24%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
           S F +LQ L L   ++ET  I  +    L +L  L L  NP+              G   
Sbjct: 53  SNFSELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGNPI-----QSFSPGSFSGLTS 105

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL- 292
           LE          ++                     +      L ++  L++++  IH+  
Sbjct: 106 LENLVAVETKLASL-----------------ESFPIG----QLITLKKLNVAHNFIHSCK 144

Query: 293 VNKAFSPAEMPSLSHLNIRGNPLE 316
           +   FS   + +L H+++  N ++
Sbjct: 145 LPAYFS--NLTNLVHVDLSYNYIQ 166

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 42/165 (25%)

Query: 157 KWLELED----ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRAL 212
           + L+L +    + I +     L       +L+ L+L    L  +      +T L  L  L
Sbjct: 163 RRLDLGELKRLSYISEGAFEGL------SNLRYLNLAMCNLREI----PNLTPLIKLDEL 212

Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLE-IY-NSNFTINFGEWALGFCGEVYDKDNPSSLC 270
            L+ N +       +     QG   L+ ++   +        A                 
Sbjct: 213 DLSGNHL-----SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF---------------- 251

Query: 271 LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
                LQS+  ++L++  +  L +  F+P  +  L  +++  NP 
Sbjct: 252 ---DNLQSLVEINLAHNNLTLLPHDLFTP--LHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 33/200 (16%), Positives = 58/200 (29%), Gaps = 44/200 (22%)

Query: 181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE- 239
            +L  L L  N+L T+         L  L+ LWL NNP+       +        P L  
Sbjct: 112 ANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPI-----ESIPSYAFNRIPSLRR 164

Query: 240 --IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---------RPLQSVTSLDLSNRC 288
             +          E A      +        L L            PL  +  LDLS   
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNL------RYLNLAMCNLREIPNLTPLIKLDELDLSGNH 218

Query: 289 IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD------IPG 342
           +  +   +F    +  L  L +  + ++   +            L  + +       +P 
Sbjct: 219 LSAIRPGSFQG--LMHLQKLWMIQSQIQ--VIER--NAFDNLQSLVEINLAHNNLTLLPH 272

Query: 343 PLGESAIEILESLPTLCTLN 362
                  ++   L  L  ++
Sbjct: 273 -------DLFTPLHHLERIH 285

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 60/234 (25%)

Query: 110 VDTDLDTDIEEV--DAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIG 167
                  D   +     K  L+    +S+  +I E+++++        + ++ L + ++ 
Sbjct: 6   TGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNS--------LTYITLANINVT 57

Query: 168 DDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCM 227
           D  L  +       +++ L++          I    + L NL  L +    V       +
Sbjct: 58  D--LTGI---EYAHNIKDLTINNIHATNYNPI----SGLSNLERLRIMGKDVT---SDKI 105

Query: 228 EDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
            +  L G   L    I +S    +                  + +      L  V S+DL
Sbjct: 106 PN--LSGLTSLTLLDISHSAHDDS----------------ILTKI----NTLPKVNSIDL 143

Query: 285 S-NRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
           S N  I ++      P   +P L  LNI+ + +           ++ FP L  L
Sbjct: 144 SYNGAITDI-----MPLKTLPELKSLNIQFDGVHD------YRGIEDFPKLNQL 186

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 6e-06
 Identities = 51/266 (19%), Positives = 93/266 (34%), Gaps = 70/266 (26%)

Query: 104 MASLMCVDTDLDTDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELED 163
           M   + V T +   I   DA    + +N  K +V D      +        ++  +   +
Sbjct: 1   MGETITVSTPI-KQIFPDDAFAETIKDNLKKKSVTDA--VTQNELN-----SIDQIIANN 52

Query: 164 ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
           +DI    +  +      P++  L L GNKL  ++ +    T LKNL  L+L+ N +    
Sbjct: 53  SDIKS--VQGI---QYLPNVTKLFLNGNKLTDIKPL----TNLKNLGWLFLDENKIKDLS 103

Query: 224 DHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
                   L+   KL+   + ++  +                  + + L      L  + 
Sbjct: 104 S-------LKDLKKLKSLSLEHNGIS------------------DINGLV----HLPQLE 134

Query: 281 SLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
           SL L N  I ++     +  + +  L  L++  N +        +  L G   LQ+L + 
Sbjct: 135 SLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISD------IVPLAGLTKLQNLYLS 183

Query: 340 ---IPGPLGESAIEILESLPTLCTLN 362
              I      S +  L  L  L  L 
Sbjct: 184 KNHI------SDLRALAGLKNLDVLE 203

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 53/144 (36%)

Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
           NL +      A+    N++  ++        L+ L+ L +NNN + +     + + + Q 
Sbjct: 36  NLGATLDQFDAIDFSDNEIRKLDGF----PLLRRLKTLLVNNNRICR-----IGEGLDQA 86

Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
            P L                                           L L+N  +  L  
Sbjct: 87  LPDLTE-----------------------------------------LILTNNSLVEL-- 103

Query: 295 KAFSP-AEMPSLSHLNIRGNPLEQ 317
               P A + SL++L I  NP+  
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNN 216
           K L + +  I     +   L    PDL  L L  N L  +  +   +  LK+L  L +  
Sbjct: 67  KTLLVNNNRICR---IGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILR 122

Query: 217 NPVLKKCDHCMEDAILQGCPKLEI 240
           NPV  K  + +   ++   P++ +
Sbjct: 123 NPVTNKKHYRLY--VIYKVPQVRV 144

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 34/213 (15%)

Query: 157 KWLELEDADIGDDMLLSL-NLSSKFPDLQALSL-CGNKLETVEIIVQEVTKLKNLRALWL 214
           K L+L ++D+ D     L +    +  L +L++ C     +   + + VT+  NL++L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 215 NNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDR 274
           N    L+K        +LQ  P+LE           E   G        D  S L +   
Sbjct: 219 NRAVPLEKLA-----TLLQRAPQLE-----------ELGTGGYTAEVRPDVYSGLSVALS 262

Query: 275 PLQSVTSL----DLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGF 330
             + +  L    D     +  + +          L+ LN+    +      +L+++L   
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVC------SRLTTLNLSYATV---QSYDLVKLLCQC 313

Query: 331 PCLQSLGVDIPGPLGESAIE-ILESLPTLCTLN 362
           P LQ L   +   + ++ +E +  +   L  L 
Sbjct: 314 PKLQRL--WVLDYIEDAGLEVLASTCKDLRELR 344

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 57/202 (28%)

Query: 157 KWLELEDADIGDDMLLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTK 205
            + E +     +   + L+             S     + L+L  N +E +      ++ 
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS----SLSG 68

Query: 206 LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVY 261
           ++NLR L L  N ++KK ++     +      LE     YN   ++              
Sbjct: 69  MENLRILSLGRN-LIKKIEN-----LDAVADTLEELWISYNQIASL-------------- 108

Query: 262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSV 320
                S +      L ++  L +SN  I N         A +  L  L + GNPL  +  
Sbjct: 109 -----SGI----EKLVNLRVLYMSNNKITNW--GEIDKLAALDKLEDLLLAGNPLYNDYK 157

Query: 321 REL------LEVLKGFPCLQSL 336
                    +EV+K  P L+ L
Sbjct: 158 ENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 169 DMLLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP 218
           D L  L +S           K  +L+ L +  NK+     I  ++  L  L  L L  NP
Sbjct: 93  DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNP 151

Query: 219 VLKKCDHCMEDA-----ILQGCPKLEIYN 242
           +          +     +++  P L+  +
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 54/237 (22%)

Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
           +++ L L    +      +++  L S    L  ++L   +L    +  ++         R
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV---FLRAR 129

Query: 211 ALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLC 270
            L L  N +               C  L            +  L          +   + 
Sbjct: 130 KLGLQLNSL--------GPE---ACKDL-----------RD-LL--------LHDQCQI- 157

Query: 271 LRDRPLQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLK 328
                    T+L LSN  +                S++HL++    L    +  L   L 
Sbjct: 158 ---------TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208

Query: 329 GFPCLQSLGVDI--PGPLGESAI-EILESLPTLCTLNGVTASKILEEGKHVIDSMLQ 382
               LQ L V     G     A+       P+L  L+ +  +++  EG+ V+  +  
Sbjct: 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH-LYFNELSSEGRQVLRDLGG 264

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 28/227 (12%)

Query: 155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLK-NLRA 211
            +  + L    +    L +L     F   + L L  N L  E  + +   +   +  +  
Sbjct: 102 ALDEVNLASCQLDPAGLRTL--LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 212 LWLNNNPVLKKCDHCMED--AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSL 269
           L L+NNP+       +      L G   +        ++     LG  G          L
Sbjct: 160 LRLSNNPL---TAAGVAVLMEGLAGNTSVT------HLSLLHTGLGDEG-------LELL 203

Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVL 327
             +    + +  L+++     +    A + A  E PSL  L++  N L     + L ++ 
Sbjct: 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLG 263

Query: 328 KGFPCLQSLGVDIPG--PLGESAIEIL-ESLPTLCTLNGVTASKILE 371
                   + V +     + E    IL E    L + +     + LE
Sbjct: 264 GAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE 310

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 27/168 (16%)

Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
           L +L+LS                +  +SL  NKL  +E   + +   +NL    L  N  
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE---KALRFSQNLEHFDLRGNGF 249

Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP---L 276
              C   + D   +      +         G+     C          + C  D P    
Sbjct: 250 --HCG-TLRDFFSKNQRVQTVAKQTVKKLTGQ-NEEECTVPTLGHY-GAYCCEDLPAPFA 304

Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAE-----MPSLSHLNIRGNPLEQNS 319
             + +L      + +         E           ++          
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 64/209 (30%)

Query: 171 LLSLNLS-------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
           L +L+L+          P ++ L    N +  V       ++ +  + ++L NN +    
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKI---- 132

Query: 224 DHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
              + D       +++      N   T+NF E                          ++
Sbjct: 133 -TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--------------------AASSDTL 171

Query: 280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
             L+L    I+++  +         L  L++  N L       +    +    +  + + 
Sbjct: 172 EHLNLQYNFIYDVKGQVV----FAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLR 222

Query: 340 ------IPGPLGESAIEILESLPTLCTLN 362
                 I         + L     L   +
Sbjct: 223 NNKLVLIE--------KALRFSQNLEHFD 243

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 3e-05
 Identities = 91/553 (16%), Positives = 156/553 (28%), Gaps = 182/553 (32%)

Query: 113 DLD-TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDML 171
           + D  D++  D  K +L    +K  ++ I+ S+                  DA  G   L
Sbjct: 32  NFDCKDVQ--DMPKSIL----SKEEIDHIIMSK------------------DAVSGTLRL 67

Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
                           L   + E V+  V+EV +  N + L    +P+  +         
Sbjct: 68  FWT-------------LLSKQEEMVQKFVEEVLR-INYKFLM---SPIKTEQ-------- 102

Query: 232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
            Q      +Y       + +       +V+ K N S    R +P   +       + +  
Sbjct: 103 RQPSMMTRMYIEQRDRLYND------NQVFAKYNVS----RLQPYLKLR------QALLE 146

Query: 292 LVNKAFSPAEMPSLSHLNIRGNP------LEQNSVRELLEVLKGFPC----LQSLG-VDI 340
           L      PA+     ++ I G        +  +      +V          L +L   + 
Sbjct: 147 L-----RPAK-----NVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWL-NLKNCNS 194

Query: 341 PGPLGESAIEILESLPTLCTLNGVTASKILEEGKHVIDSMLQPRLPEWSADQP------- 393
           P    E+ +E+L+ L      N  + S      K  I S +Q  L      +P       
Sbjct: 195 P----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLV 249

Query: 394 LAD----RVLSAMWLY---LMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPF 446
           L +    +  +A  L    L+T R              V D L +A       +      
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQ-----------VTDFLSAATTTHISLDHHSMTL 298

Query: 447 LFMPEGK--LSSAVSFSI--LWPIQNVYKRDECTRDFLY--GIGE-DKQRSARLTAWFHT 499
               E K  L   +      L P      R+  T +      I E  +   A    W H 
Sbjct: 299 T-PDEVKSLLLKYLDCRPQDL-P------REVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 500 PQSYFINEYEKHCQKLQFKSLSYTPTKSSNTESLHRSDGCASRVYTDIPYVEEFLTRTEF 559
                    +K    ++  SL            L  ++    +++               
Sbjct: 351 -------NCDKLTTIIE-SSL----------NVLEPAE--YRKMFDR------------L 378

Query: 560 VITTEPKDADI-------IWTSLQVDEDMKTATGITDQQYVNQFPFESC-------LVMK 605
            +   P  A I       IW  +   + M     +     V + P ES        L +K
Sbjct: 379 SVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 606 HHLAETVQKVRKI 618
             L       R I
Sbjct: 437 VKLENEYALHRSI 449

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLK--NLRALWLNNNPVLKKCDHCME--DA 230
           ++  K P+L+ L+L GN+L++      E+ K+K   L  LWL+ N +            A
Sbjct: 190 SIVQKAPNLKILNLSGNELKSER----ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245

Query: 231 ILQGCPKLEI 240
           I +  PKL  
Sbjct: 246 IRERFPKLLR 255

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 30/207 (14%), Positives = 59/207 (28%), Gaps = 52/207 (25%)

Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
            +G + +  L        ++ L L    LET E     + K  NL  L            
Sbjct: 279 YMGPNEMPIL--FPFAAQIRKLDLLYALLET-EDHCTLIQKCPNLEVLET---------R 326

Query: 225 HCMED----AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT 280
           + + D     + Q C +L+              +    +    ++   L +  R L +  
Sbjct: 327 NVIGDRGLEVLAQYCKQLKRLR-----------IERGADEQGMEDEEGL-VSQRGLIA-- 372

Query: 281 SLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI 340
              L+  C                L ++ +  + +   S+  +   LK     + + +D 
Sbjct: 373 ---LAQGC--------------QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

Query: 341 PG-----PLGESAIEILESLPTLCTLN 362
                  PL      +L     L    
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFA 442

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 37/190 (19%)

Query: 159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLRALWLNN 216
           +E E+  +    L++L  +    +L+ +++  + +  E++E I   +  L + R + L+ 
Sbjct: 358 MEDEEGLVSQRGLIAL--AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415

Query: 217 NPVLKKCDHCMED---AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
              +   D  +++   ++L GC KL  +                G + D      L    
Sbjct: 416 EERI--TDLPLDNGVRSLLIGCKKLRRFA----------FYLRQGGLTDL----GLSYIG 459

Query: 274 RPLQSVTSLDLSN-----RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
           +   +V  + L         +             P+L  L +RG      S R +   + 
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRG------CPNLQKLEMRGCCF---SERAIAAAVT 510

Query: 329 GFPCLQSLGV 338
             P L+ L V
Sbjct: 511 KLPSLRYLWV 520

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 40/228 (17%)

Query: 157 KWLELEDA-----DIGDDMLLSLN-LSSKFPDLQALSLCGN-------------KLETVE 197
           +W +++        +      + + LS +FP+L++L L G                    
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 198 IIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257
            + +    L+ L+++      V    D  ++         LE              L  C
Sbjct: 103 WVTEISNNLRQLKSVHFRRMIVS---DLDLDRLAKARADDLETLK-----------LDKC 148

Query: 258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS--PAEMPSLSHLNIRGNPL 315
                      L       + + +L +          K          SL  LN      
Sbjct: 149 SGFTT----DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204

Query: 316 EQNSVRELLEVLKGFPCLQSLGV-DIPGPLGESAIEILESLPTLCTLN 362
            + S ++L  + +    L S+ V D          +   +L   C  +
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 48/253 (18%), Positives = 86/253 (33%), Gaps = 67/253 (26%)

Query: 116 TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLN 175
             I   DA    + +N  K +V D      +        ++  +   ++DI       + 
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDA--VTQNELN-----SIDQIIANNSDIKS-----VQ 62

Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235
                P++  L L GNKL  ++     +  LKNL  L+L+ N V       +    L+  
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKD-----LSS--LKDL 111

Query: 236 PKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNL 292
            KL+   + ++  +                  + + L      L  + SL L N  I ++
Sbjct: 112 KKLKSLSLEHNGIS------------------DINGL----VHLPQLESLYLGNNKITDI 149

Query: 293 VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD---IPGPLGESAI 349
                  + +  L  L++  N +        +  L G   LQ+L +    I      S +
Sbjct: 150 TV----LSRLTKLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKNHI------SDL 193

Query: 350 EILESLPTLCTLN 362
             L  L  L  L 
Sbjct: 194 RALAGLKNLDVLE 206

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 35/163 (21%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
            K   L  LSL  N L       Q      +L+ L L+ N V+      M      G  +
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-----MSSN-FLGLEQ 102

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
           LE     +++   +                            L+++  LD+S+       
Sbjct: 103 LEHLDFQHSNLKQM----SEFSVF----------------LSLRNLIYLDISHTHTRVAF 142

Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
           N  F+   + SL  L + GN  ++N + ++         L  L
Sbjct: 143 NGIFNG--LSSLEVLKMAGNSFQENFLPDI---FTELRNLTFL 180

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 41/172 (23%)

Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNP 218
           L  L+LS                L+ L    + L+   +    V   L+NL  L +++  
Sbjct: 80  LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTH 137

Query: 219 VLKKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-- 273
                     + I  G   LE   +  ++F  NF               N + L L    
Sbjct: 138 T-----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQ 186

Query: 274 ---------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE 316
                      L S+  L++S+    +L    +    + SL  L+   N + 
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIM 236

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKL-KNL 209
           T+  L+L   D             S+    + +L+L GN L  ++ + ++Q +  +  N+
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169

Query: 210 RALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSL 269
            +L L  N +  K    +   +      +       +++     LG           + L
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVT------SLDLSANLLGLKSY-------AEL 216

Query: 270 C--LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEM--PSLSHLNIRGNPLEQNSVRELLE 325
                  P   V SL+L   C+H    +     +     L  + +  + ++  S  +   
Sbjct: 217 AYIFSSIP-NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 326 VLKGFPCLQSL 336
           +   FP +Q +
Sbjct: 276 LGAAFPNIQKI 286

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 21/175 (12%)

Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
           +V  L+L    +G      L+   SS    + +L+LC N L   ++E +      LK+L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 211 ALWLNNNPVLKKCDHCMED--AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSS 268
            ++L+ + V        +   A      K+        ++     +     +   +    
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKII------LVDKNGKEIHPSHSIPISN---- 306

Query: 269 LCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP---SLSHLNIRGNPLEQNSV 320
             +R+          L N+C+        +  ++     L        PL ++  
Sbjct: 307 -LIRE-LSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHH 359

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 27/227 (11%)

Query: 139 DILESEIHNATEKGDGTVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKLET- 195
             L+    N   K    ++ +      + +      +    S    L  + +  N +   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPE 202

Query: 196 --VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWA 253
               ++++ +   + L+ L L +N         +  A L+  P L        +   +  
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLR------ELGLNDCL 255

Query: 254 LGFCGEVYDKDNPSSLC--LRDRPLQSVTSLDLSNRCIHNLVNKAFSPA---EMPSLSHL 308
           L   G          +           + +L L    I     +        +MP L  L
Sbjct: 256 LSARGAAA-------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 309 NIRGNPL--EQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILE 353
            + GN    E + V E+ EV       +   +D    L +   E  E
Sbjct: 309 ELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEE 355

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 37/238 (15%), Positives = 70/238 (29%), Gaps = 48/238 (20%)

Query: 155 TVKWLELEDADIGDDMLLSLNLSSKF-------PDLQALSLCGNKL--ETVEIIVQEVTK 205
            ++  E  D   G                    P L  + L  N       E ++  ++K
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 206 LKNLRALWLNNNPVLKKC--------DHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC 257
              L  L+L+NN +  +              +   +  P L       +I  G   L   
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR------SIICGRNRLE-- 172

Query: 258 GEVYDKDNPSSLCLRD--RPLQSVTSLDLSNRCIHNL-VNKAFSPA--EMPSLSHLNIRG 312
                  N S        +  + + ++ +    I    +             L  L+++ 
Sbjct: 173 -------NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 313 NPLEQNSVRELLEVLKGFPCLQSLGVD---IPGPLGESAIEILESL-----PTLCTLN 362
           N         L   LK +P L+ LG++   +    G  A  ++++        L TL 
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLL-SARG--AAAVVDAFSKLENIGLQTLR 280

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 38/204 (18%)

Query: 155 TVKWLELEDADIGDD--MLLSLNLSSKFPDLQALSLCGNKL--ETVEIIVQEVTKLKNLR 210
           +++   L+   I  +    +   L  +   ++ + L GN +  E    + + +   K+L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 211 ALWLNNNPVLKKCDHCMEDAI-----LQGCPKLEIYN--SNFTINFGEWALGFCGEVYDK 263
               ++    +  D   E        L  CPKL       N    FG  A     +    
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN---AFGPTAQEPLIDFL-S 119

Query: 264 DNPSSLCLRDRPLQSVTSLDLSNRCIHN-----------LVNKAFSPAEMPSLSHLNIRG 312
            +             +  L L N  +              +         P L  +    
Sbjct: 120 KHTP-----------LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 313 NPLEQNSVRELLEVLKGFPCLQSL 336
           N LE  S++E  +  +    L ++
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTV 192

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 20/191 (10%)

Query: 183 LQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIY 241
           L+ L L  N L  +          L +L  L L  NP         E ++     KL+I 
Sbjct: 102 LEHLDLSYNYLSNLS---SSWFKPLSSLTFLNLLGNPY----KTLGETSLFSHLTKLQIL 154

Query: 242 NSNFTINFGE------WALGFCGEVYDKDNP-SSLCLRD-RPLQSVTSLDLSNRCIHNLV 293
                  F +        L F  E+    +   S   +  + +Q+V+ L L  +    L+
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 294 NKAFSPAEMPSLSHLNIRGNPLEQNSVRELLE-VLKGFPCLQSL-GVDIPGPLGESAIEI 351
                     S+  L +R   L+     EL            +   V I        +++
Sbjct: 215 EIFVDV--TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272

Query: 352 LESLPTLCTLN 362
           L  +  L  L 
Sbjct: 273 LNQISGLLELE 283

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 21/139 (15%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
               ++  L L   +   +  I   V    ++  L L +               L     
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTD-------------LDTFHF 239

Query: 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-RPLQSVTSLDLSNRCIHNLVNKA 296
            E+                   V   D      ++    +  +  L+ S   + ++ +  
Sbjct: 240 SELSTGETN---SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296

Query: 297 FSPAEMPSLSHLNIRGNPL 315
           F    + SL  + +  NP 
Sbjct: 297 FDR--LTSLQKIWLHTNPW 313

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 44/181 (24%)

Query: 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEV--TKLKNLRALW 213
           +K L +  A   +    S      FP L  L L  N       ++  +   K   L+ L 
Sbjct: 151 LKVLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 214 LNNNPVLKKCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSL 269
           L N   ++        A+     +L+     +NS          L         D PS L
Sbjct: 208 LRNAG-METPSGVCS-ALAAARVQLQGLDLSHNS----------LRDAAGAPSCDWPSQL 255

Query: 270 ---------------CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP 314
                           L       ++ LDLS     N +++  SP E+P + +L+++GNP
Sbjct: 256 NSLNLSFTGLKQVPKGL----PAKLSVLDLSY----NRLDRNPSPDELPQVGNLSLKGNP 307

Query: 315 L 315
            
Sbjct: 308 F 308

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
           LE     D+ L +++  +  P LQ L LC N+L+    I Q +     L  L L  N + 
Sbjct: 488 LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLC 546

Query: 221 KKCDHCMEDAILQGCPKLE 239
           ++     ++ + +  P + 
Sbjct: 547 QEEGI--QERLAEMLPSVS 563

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 55/173 (31%)

Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
            +    L  L    +   +  L L  N+L  +      +  L+ L  L  ++N  L+  D
Sbjct: 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNA-LENVD 502

Query: 225 HCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
                  +   P+L+                                          L L
Sbjct: 503 G------VANLPRLQE-----------------------------------------LLL 515

Query: 285 SNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
            N  +      A  P    P L  LN++GN L          + +  P + S+
Sbjct: 516 CNNRLQQS--AAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSI 565

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 42/165 (25%)

Query: 157 KWLELED----ADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRAL 212
             L+L +      I +     L       +L+ L+L    ++ +      +T L  L  L
Sbjct: 174 MRLDLGELKKLEYISEGAFEGL------FNLKYLNLGMCNIKDM----PNLTPLVGLEEL 223

Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLE-IY-NSNFTINFGEWALGFCGEVYDKDNPSSLC 270
            ++ N         +      G   L+ ++  ++        A                 
Sbjct: 224 EMSGNHF-----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF---------------- 262

Query: 271 LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
                L S+  L+L++  + +L +  F+P  +  L  L++  NP 
Sbjct: 263 ---DGLASLVELNLAHNNLSSLPHDLFTP--LRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 36/201 (17%), Positives = 55/201 (27%), Gaps = 46/201 (22%)

Query: 181 PDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
             L  L L  N L  +          L  LR LWL NNP+       +        P L 
Sbjct: 123 ASLNTLELFDNWLTVIP---SGAFEYLSKLRELWLRNNPI-----ESIPSYAFNRVPSLM 174

Query: 240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD---------RPLQSVTSLDLSNR 287
              +          E A           N   L L            PL  +  L++S  
Sbjct: 175 RLDLGELKKLEYISEGAFEGLF------NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228

Query: 288 CIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD------IP 341
               +   +F    + SL  L +  + +    +        G   L  L +       +P
Sbjct: 229 HFPEIRPGSFHG--LSSLKKLWVMNSQVS--LIER--NAFDGLASLVELNLAHNNLSSLP 282

Query: 342 GPLGESAIEILESLPTLCTLN 362
                   ++   L  L  L+
Sbjct: 283 H-------DLFTPLRYLVELH 296

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 56/186 (30%)

Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
           +  L+ S             +L  L L  N L     ++        L  + L+ N + K
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN----YPGLVEVDLSYNELEK 262

Query: 222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNP-SSLCLRDRPLQSVT 280
                +         +LE                    +Y  +N   +L L  +P+ ++ 
Sbjct: 263 -----IMYHPFVKMQRLE-------------------RLYISNNRLVALNLYGQPIPTLK 298

Query: 281 SLDLSNRCIHNLVNKAFS------------------PAEMPSLSHLNIRGNPLEQNSVRE 322
            LDLS+  + ++                         +   +L +L +  N  + NS+R 
Sbjct: 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 358

Query: 323 LLEVLK 328
           L   + 
Sbjct: 359 LFRNVA 364

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 29/170 (17%)

Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
           L  ++    P L  L L  N L ++   +        L  L ++NN + +     +ED  
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMSNNNLER-----IEDDT 160

Query: 232 LQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNP-SSLCLRDRPLQSVTSLDLSN 286
            Q    L+      N    ++     +          N  S+L        +V  LD S+
Sbjct: 161 FQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTL----AIPIAVEELDASH 214

Query: 287 RCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
             I+ +            L+ L ++ N L           L  +P L  +
Sbjct: 215 NSINVVRGPVNV-----ELTILKLQHNNLTD------TAWLLNYPGLVEV 253

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 57/211 (27%)

Query: 156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLN 215
                L    + D  L+S     +   +Q  +   + ++++  +        NL+ L L+
Sbjct: 21  AVKQNLGKQSVTD--LVSQ---KELSGVQNFNGDNSNIQSLAGM----QFFTNLKELHLS 71

Query: 216 NNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP 275
           +N +       +    L+   KLE  +           +     + + +   S CL    
Sbjct: 72  HNQISD-----LSP--LKDLTKLEELS-----------VNRN-RLKNLNGIPSACL---- 108

Query: 276 LQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQ 334
               + L L N  + +           + +L  L+IR N L+       + +L     L+
Sbjct: 109 ----SRLFLDNNELRDT-----DSLIHLKNLEILSIRNNKLKS------IVMLGFLSKLE 153

Query: 335 SLGVD---IPGPLGESAIEILESLPTLCTLN 362
            L +    I      +    L  L  +  ++
Sbjct: 154 VLDLHGNEI------TNTGGLTRLKKVNWID 178

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 46/198 (23%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
            K   L  L    NK+  +E           L  L L+ N + +     + +       +
Sbjct: 570 QKMVKLGLLDCVHNKVRHLE----AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQ 620

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
           +E     +N                       P+    +   +  + S+D S   I +  
Sbjct: 621 VEGLGFSHN-KLK-----------------YIPNIFNAKS--VYVMGSVDFSYNKIGSEG 660

Query: 294 NKAFSPAE---MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD------IPGPL 344
                  +     + S + +  N ++    +   E+      + ++ +       IP   
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQ----KFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 345 GESAIEILESLPTLCTLN 362
            +      ++   L T++
Sbjct: 717 LKPKDGNYKNTYLLTTID 734

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 20/164 (12%), Positives = 51/164 (31%), Gaps = 18/164 (10%)

Query: 173 SLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL 232
            L+ + +   +  LSL G   +    +   + +L  L+ L    +               
Sbjct: 318 DLDNNGR---VTGLSLAGFGAKG--RVPDAIGQLTELKVLSFGTHS-ETVSG---RLFGD 368

Query: 233 QGCPKLEIYNSNFTI--NFGEWALGFCGEVYDKD---NPSSLCLRDRPLQSVTSLDLSNR 287
           +             I  ++ +  L +   +   D   +  +     +P++  + + L + 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 288 CIHNLVNKAFS-PAE---MPSLSHLNIRGNPLEQNSVRELLEVL 327
            I NL N+          +  L  +    +P   +++    E  
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 30/191 (15%), Positives = 53/191 (27%), Gaps = 46/191 (24%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETV-----EIIVQEVTKLKNLRALW 213
             ++ LS            +    +  + L  N + ++     +           L  + 
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 214 LNNNPVLKKCDHCMEDAILQGCPKLEI----YN--SNFTINFGE----WALGFCGEVYDK 263
           L  N  L       +D      P L      YN  S+F           A G   +   +
Sbjct: 735 LRFNK-LTSLS---DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 264 DN------PSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
            N      P+ +        S+  L +      N + K       P L  L+I  NP   
Sbjct: 791 GNRILRQWPTGIT----TCPSLIQLQIG----SNDIRK-VDEKLTPQLYILDIADNPNIS 841

Query: 318 NSVRELLEVLK 328
             V  +   ++
Sbjct: 842 IDVTSVCPYIE 852

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 27/209 (12%), Positives = 60/209 (28%), Gaps = 64/209 (30%)

Query: 171 LLSLNLS-------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC 223
           L +L+L+          P ++ L    N +  V       ++ +  + ++L NN +    
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKI---- 132

Query: 224 DHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
              + D       +++      N   T+NF E A                        ++
Sbjct: 133 -TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------------------ASSDTL 171

Query: 280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
             L+L    I+++  +         L  L++  N L       +    +    +  + + 
Sbjct: 172 EHLNLQYNFIYDVKGQVV----FAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLR 222

Query: 340 ------IPGPLGESAIEILESLPTLCTLN 362
                 I   L             L   +
Sbjct: 223 NNKLVLIEKALR--------FSQNLEHFD 243

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 61/183 (33%)

Query: 171 LLSLNLS------------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN- 217
           +  L+LS            + F  L+ L+L  N L        ++  L  LR L LNNN 
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET----LDLESLSTLRTLDLNNNY 91

Query: 218 ----PVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD 273
                V            ++    L   N+N +                        +  
Sbjct: 92  VQELLVGPS---------IE---TLHAANNNISR-----------------------VSC 116

Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
              Q   ++ L+N  I  L +          + +L+++ N ++  +  EL         L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFAELAASS---DTL 171

Query: 334 QSL 336
           + L
Sbjct: 172 EHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 38/175 (21%)

Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
           + +L+ +         S+    + + L  NK+    +   +      ++ L L  N +  
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEI-- 156

Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCG---EVYDKDN-----PSSL 269
             D      +      LE     YN  + +               +    N         
Sbjct: 157 --DTVNFAELAASSDTLEHLNLQYNFIYDVK----GQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELL 324
                    VT + L N  +  +  KA       +L H ++RGN     ++R+  
Sbjct: 211 Q----SAAGVTWISLRNNKLVLI-EKALR--FSQNLEHFDLRGNGFHCGTLRDFF 258

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 29/164 (17%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
              P L  L L  N L ++            L  L ++NN  L++    +ED   Q    
Sbjct: 120 QNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNN-LER----IEDDTFQATTS 172

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNP-SSLCLRDRPLQSVTSLDLSNRCIHNL 292
           L+      N    ++     +          N  S+L        +V  LD S+  I+ +
Sbjct: 173 LQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV 226

Query: 293 VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
                       L+ L ++ N L           L  +P L  +
Sbjct: 227 RGPVN-----VELTILKLQHNNLTD------TAWLLNYPGLVEV 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 28/172 (16%)

Query: 171 LLSLNLS---------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLK 221
           +  L+ S             +L  L L  N L     ++        L  + L+ N + K
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN----YPGLVEVDLSYNELEK 268

Query: 222 KCDHCMEDAILQGCPKLEI----YNSNFTINFGEWALGFCGEVYDKDNP-SSLCLRDRPL 276
                +         +LE      N    +N     +     +    N    +       
Sbjct: 269 -----IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323

Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLK 328
             + +L L +  I  L       +   +L +L +  N  + NS+R L   + 
Sbjct: 324 DRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 19/158 (12%)

Query: 166 IGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT------KLKNLRALWLNNNPV 219
           I ++ LL+            L L    L+ +              K  ++  L L+ N  
Sbjct: 169 ICEEDLLNFQGKH----FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-- 222

Query: 220 LKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSV 279
                  M           +I +   + ++   +           +P +   +      V
Sbjct: 223 --GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF---KDPDNFTFKGLEASGV 277

Query: 280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
            + DLS   I  L+   FS      L  L +  N + +
Sbjct: 278 KTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINK 313

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 34/142 (23%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
           S F DL+ L+L  N++  ++        L +L  L L+ N +       ++  + +   K
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFL-----GSIDSRMFENLDK 348

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
           LE+    YN    +             +              L ++  L L    + ++ 
Sbjct: 349 LEVLDLSYNHIRALGDQ---------SFLG------------LPNLKELALDTNQLKSVP 387

Query: 294 NKAFSPAEMPSLSHLNIRGNPL 315
           +  F    + SL  + +  NP 
Sbjct: 388 DGIFDR--LTSLQKIWLHTNPW 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 42/162 (25%)

Query: 175 NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG 234
           N       ++ LS   NKL+ +   + +   +  + A+  + N              +  
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNE-------------IGS 416

Query: 235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN 294
                                            +         +V+S++LSN  I     
Sbjct: 417 VDGKNFDPL----------------------DPTPFK----GINVSSINLSNNQISKFPK 450

Query: 295 KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
           + FS      LS +N+ GN L +     L +  + F     L
Sbjct: 451 ELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 30/156 (19%)

Query: 171 LLSLNLS----SKFPD----LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK 222
           L ++        K PD    L+++    N LE +     E+  L  L  ++ +NN +   
Sbjct: 197 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP----ELQNLPFLTTIYADNNLL--- 249

Query: 223 CDHCMEDAILQGCPKLE-IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTS 281
                   +    P LE +   +  +            +   +N  S  L + P  ++  
Sbjct: 250 ------KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS-GLSELP-PNLYY 301

Query: 282 LDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQ 317
           L+ S+  I +L          PSL  LN+  N L +
Sbjct: 302 LNASSNEIRSL------CDLPPSLEELNVSNNKLIE 331

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 49/171 (28%)

Query: 172 LSLN-LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA 230
            +L  LS   P L+ L +  N+LE +     E+     L+ + ++NN  LKK        
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLP----ELQNSSFLKIIDVDNNS-LKKLPDLPPS- 174

Query: 231 ILQGCPKLEIYNSNFTI--NFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC 288
            L+    +   N+                                  L  +T++   N  
Sbjct: 175 -LE---FIAAGNNQLEELPELQN------------------------LPFLTAIYADNNS 206

Query: 289 IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVD 339
           +  L      P    SL  +    N LE+      L  L+  P L ++  D
Sbjct: 207 LKKL------PDLPLSLESIVAGNNILEE------LPELQNLPFLTTIYAD 245

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 32/150 (21%)

Query: 181 PDLQALSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLE 239
             L  L L    L+ +      +   L  L+ L+L +N +       + D   +    L 
Sbjct: 105 GRLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNAL-----QALPDDTFRDLGNLT 156

Query: 240 ---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRD-----------RPLQSVTSLDLS 285
              ++ +  + +  E A      +        L L             R L  + +L L 
Sbjct: 157 HLFLHGNRIS-SVPERAFRGLHSL------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNPL 315
              +  L  +A +P  + +L +L +  NP 
Sbjct: 210 ANNLSALPTEALAP--LRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 33/143 (23%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
               +L  L L  N L  ++      T L  L  L L++N  L+     ++ A   G  +
Sbjct: 53  RACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRS----VDPATFHGLGR 106

Query: 238 LEI----YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV 293
           L            +  G     F G                 L ++  L L +  +  L 
Sbjct: 107 LHTLHLDRCGLQELGPG----LFRG-----------------LAALQYLYLQDNALQALP 145

Query: 294 NKAFSPAEMPSLSHLNIRGNPLE 316
           +  F    + +L+HL + GN + 
Sbjct: 146 DDTFRD--LGNLTHLFLHGNRIS 166

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 55/192 (28%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI-LQGCP 236
           +   DL +LSL  N++E +      +  L +L       N +         D   +    
Sbjct: 174 ANLTDLYSLSLNYNQIEDIS----PLASLTSLHYFTAYVNQI--------TDITPVANMT 221

Query: 237 KLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN 291
           +L    I N+  T                               L  +T L++    I +
Sbjct: 222 RLNSLKIGNNKITDLSPLAN------------------------LSQLTWLEIGTNQISD 257

Query: 292 LVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG-PLGESAIE 350
           +   A    ++  L  LN+  N +        + VL     L SL   +    LG   +E
Sbjct: 258 I--NAVK--DLTKLKMLNVGSNQISD------ISVLNNLSQLNSL--FLNNNQLGNEDME 305

Query: 351 ILESLPTLCTLN 362
           ++  L  L TL 
Sbjct: 306 VIGGLTNLTTLF 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 41/212 (19%), Positives = 66/212 (31%), Gaps = 72/212 (33%)

Query: 171 LLSLNLS-----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPV 219
           + SLNL            S    L  L++  +K++ V      +  L +L +L LN N +
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQI 189

Query: 220 LKKCDHCMEDAI-LQGCPKLE---IYNSNFT--INFGEWALGFCGEVYDKDNPSSLCLRD 273
                   ED   L     L     Y +  T                             
Sbjct: 190 --------EDISPLASLTSLHYFTAYVNQITDITPVAN---------------------- 219

Query: 274 RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL 333
             +  + SL + N  I +L     +   +  L+ L I  N +        +  +K    L
Sbjct: 220 --MTRLNSLKIGNNKITDL--SPLA--NLSQLTWLEIGTNQISD------INAVKDLTKL 267

Query: 334 QSLGVD---IPGPLGESAIEILESLPTLCTLN 362
           + L V    I      S I +L +L  L +L 
Sbjct: 268 KMLNVGSNQI------SDISVLNNLSQLNSLF 293

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 277 QSVTSLDLSNRCIHNLVNKAFSPAEM----PSLSHLNIRGNPLEQNSVRELLEVLKGFPC 332
             V    +     ++ V  A   AEM     +L  LN+  N +  + +  L+E L+    
Sbjct: 65  TYVKKFSIVGTRSNDPVAFAL--AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTS 122

Query: 333 LQSLGVD----IPGPLGESAI-EILESLPTLCTLN 362
           L  L +D      G   E  I  +LE   TL    
Sbjct: 123 LIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG 157

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 65/208 (31%)

Query: 171 LLSLNLS----------SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL 220
           L SL  +              +L  LSL GN+L+ +  +      L NL  L L NN + 
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQIS 256

Query: 221 KKCDHCMEDAILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ 277
                      L G  KL    +  +  +                  N S L      L 
Sbjct: 257 NLAP-------LSGLTKLTELKLGANQIS------------------NISPLA----GLT 287

Query: 278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG 337
           ++T+L+L+   + ++     S   + +L++L +  N +        +  +     LQ L 
Sbjct: 288 ALTNLELNENQLEDI--SPIS--NLKNLTYLTLYFNNISD------ISPVSSLTKLQRLF 337

Query: 338 VD---IPGPLGESAIEILESLPTLCTLN 362
                +      S +  L +L  +  L+
Sbjct: 338 FYNNKV------SDVSSLANLTNINWLS 359

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 28/145 (19%)

Query: 172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI 231
                     +L+ L L  N+L+ +  I +  T++K+L+ L ++ N V     +  +   
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS----YDEKKGD 394

Query: 232 LQGCPKLEI-YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH 290
                 L     S+  +    +                          +  LDL +  I 
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIF--------------------RCLPPRIKVLDLHSNKIK 434

Query: 291 NLVNKAFSPAEMPSLSHLNIRGNPL 315
           ++  +      + +L  LN+  N L
Sbjct: 435 SIPKQVVK---LEALQELNVASNQL 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	619
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.51
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.49
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.44
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.43
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.43
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.42
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.42
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.42
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.42
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.41
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.41
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.41
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.41
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.39
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.38
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.37
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.32
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.32
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.3
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.29
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.29
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.26
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.25
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.25
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.24
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.02
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.01
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.95
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.92
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.92
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.92
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.89
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.87
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.86
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.64
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3tig_A	380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	98.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.97
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.98
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.15
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	95.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.75
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	94.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.3
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	93.82
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.81
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	91.99
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	91.05
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	90.8
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	90.77
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	90.36
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	90.34
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	89.27
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	89.1
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	88.14
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	87.92
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	87.84
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	87.61
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	87.05
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	86.82
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	85.39
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	83.55

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.58  E-value=2.7e-15  Score=150.71  Aligned_cols=174  Identities=22%  Similarity=0.258  Sum_probs=132.7

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|+|..   ++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....     ...+.
T Consensus        37 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~  106 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSS---LPSKAFHRLTKLRLLYLNDNKLQTLP--AGIFKELKNLETLWVTDNKLQALP-----IGVFD  106 (270)
T ss_dssp             TTCSEEECCSSCCSC---CCTTSSSSCTTCCEEECCSSCCSCCC--TTTTSSCTTCCEEECCSSCCCCCC-----TTTTT
T ss_pred             CCCCEEECcCCCCCe---eCHHHhcCCCCCCEEECCCCccCeeC--hhhhcCCCCCCEEECCCCcCCcCC-----HhHcc
Confidence            468899999999988   77777889999999999999999876  456788999999999999988665     33567


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++...-.+              .|.   .....+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|
T Consensus       107 ~l~~L~~L~l~~n~l~~--------------~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n  167 (270)
T 2o6q_A          107 QLVNLAELRLDRNQLKS--------------LPP---RVFDSLTKLTYLSLGYNELQSLPKGVFD--KLTSLKELRLYNN  167 (270)
T ss_dssp             TCSSCCEEECCSSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred             cccCCCEEECCCCccCe--------------eCH---HHhCcCcCCCEEECCCCcCCccCHhHcc--CCcccceeEecCC
Confidence            88999999887533211              110   1123578899999999999999888887  8899999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .|..++    ...+.++++|+.|++..+.. +......+..+++|+.|
T Consensus       168 ~l~~~~----~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          168 QLKRVP----EGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             CCSCCC----TTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEE
T ss_pred             cCcEeC----hhHhccCCCcCEEECCCCcC-CcCCHHHhccccCCCEE
Confidence            998887    44578889999999887743 22222334556666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.55  E-value=7.8e-15  Score=145.76  Aligned_cols=156  Identities=19%  Similarity=0.178  Sum_probs=118.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|+|..   ++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....     ...+.
T Consensus        35 ~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~  104 (251)
T 3m19_A           35 ADTEKLDLQSTGLAT---LSDATFRGLTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLASLP-----LGVFD  104 (251)
T ss_dssp             TTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCC-----TTTTT
T ss_pred             CCCCEEEccCCCcCc---cCHhHhcCcccCCEEECCCCcCCccC--HhHhccCCcCCEEECCCCcccccC-----hhHhc
Confidence            467888999999888   66666778899999999999888876  456788899999999999888654     33467


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++..+-.              ..|..   ....+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|
T Consensus       105 ~l~~L~~L~L~~N~l~--------------~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N  165 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLK--------------SLPSG---VFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTN  165 (251)
T ss_dssp             TCTTCCEEECCSSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred             ccCCCCEEEcCCCcCC--------------CcChh---HhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCC
Confidence            7888888888653321              11111   123477888899999999888887776  7888999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .|..+.    ...+.++++|+.|++..|.
T Consensus       166 ~l~~~~----~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          166 QLQSVP----HGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCSCCC----TTTTTTCTTCCEEECCSCC
T ss_pred             cCCccC----HHHHhCCCCCCEEEeeCCc
Confidence            888777    3457788888888888775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.52  E-value=2.1e-14  Score=144.65  Aligned_cols=175  Identities=19%  Similarity=0.175  Sum_probs=115.5

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCc-ccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~Nk-L~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      ...+++|++++|.|..   ++...+..+++|+.|+|++|. +..++  ...+.++++|+.|+|++|.+....+     ..
T Consensus        55 ~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-----~~  124 (285)
T 1ozn_A           55 CRNLTILWLHSNVLAR---IDAAAFTGLALLEQLDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCGLQELGP-----GL  124 (285)
T ss_dssp             CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSCTTCCCCC--TTTTTTCTTCCEEECTTSCCCCCCT-----TT
T ss_pred             CCCCCEEECCCCccce---eCHhhcCCccCCCEEeCCCCCCccccC--HHHhcCCcCCCEEECCCCcCCEECH-----hH
Confidence            3566777777777766   444555667777777777775 66653  2456677777777777777665432     23


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      +..+++|+.|+++...-.              ..|.   .....+.+|+.|+|++|.|..++...|.  .+++|+.|+++
T Consensus       125 ~~~l~~L~~L~l~~n~l~--------------~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~  185 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNALQ--------------ALPD---DTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLH  185 (285)
T ss_dssp             TTTCTTCCEEECCSSCCC--------------CCCT---TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECC
T ss_pred             hhCCcCCCEEECCCCccc--------------ccCH---hHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECC
Confidence            556777777766543211              0110   1123477888888888888888887776  78888888888


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +|.|..+.    +..+.++++|+.|++..+..-+ .....+..+++|+.|
T Consensus       186 ~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          186 QNRVAHVH----PHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYL  230 (285)
T ss_dssp             SSCCCEEC----TTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEE
T ss_pred             CCcccccC----HhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEE
Confidence            88888775    4567788888888888775322 223456667777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=2.5e-14  Score=143.64  Aligned_cols=159  Identities=19%  Similarity=0.246  Sum_probs=133.0

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|.|..   ++...+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....+     ..
T Consensus        59 ~l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-----~~  128 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPP-----RV  128 (270)
T ss_dssp             SCTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSCCCCCCT-----TT
T ss_pred             CCCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCccCeeCH-----HH
Confidence            45789999999999998   78888899999999999999999887  4578899999999999999987653     34


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      +..+++|+.|+++...-.              ..|..   ....+.+|+.|+|++|.|..++...|.  ++++|+.|+|+
T Consensus       129 ~~~l~~L~~L~Ls~n~l~--------------~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~  189 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQ--------------SLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFD--KLTELKTLKLD  189 (270)
T ss_dssp             TTTCTTCCEEECCSSCCC--------------CCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECC
T ss_pred             hCcCcCCCEEECCCCcCC--------------ccCHh---HccCCcccceeEecCCcCcEeChhHhc--cCCCcCEEECC
Confidence            678999999998754321              11111   123578999999999999999998887  89999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +|.|..++    ...+..+++|+.|++..|+.
T Consensus       190 ~N~l~~~~----~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          190 NNQLKRVP----EGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SSCCSCCC----TTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCCcCC----HHHhccccCCCEEEecCCCe
Confidence            99999888    45678899999999998863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.51  E-value=1.6e-14  Score=145.55  Aligned_cols=174  Identities=20%  Similarity=0.209  Sum_probs=137.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCc-ccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP-VLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Np-i~~~~~~~~~~~il  232 (619)
                      ..+++|++++|+|..   ++...+..+++|+.|+|++|.|..+.  ...+.++++|+.|+|++|+ +....+     ..+
T Consensus        32 ~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~-----~~~  101 (285)
T 1ozn_A           32 AASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVDP-----ATF  101 (285)
T ss_dssp             TTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCT-----TTT
T ss_pred             CCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCccccCH-----HHh
Confidence            578899999999998   77777889999999999999999875  4578999999999999998 665542     346


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..+++|+.|+++.+.-.+             -.|    .....+.+|+.|+|++|.|..++...|.  .+++|+.|++++
T Consensus       102 ~~l~~L~~L~l~~n~l~~-------------~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~  162 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQE-------------LGP----GLFRGLAALQYLYLQDNALQALPDDTFR--DLGNLTHLFLHG  162 (285)
T ss_dssp             TTCTTCCEEECTTSCCCC-------------CCT----TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS
T ss_pred             cCCcCCCEEECCCCcCCE-------------ECH----hHhhCCcCCCEEECCCCcccccCHhHhc--cCCCccEEECCC
Confidence            789999999987543221             011    1123578999999999999999998887  899999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      |.|..+.    ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus       163 n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          163 NRISSVP----ERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTL  206 (285)
T ss_dssp             SCCCEEC----TTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEE
T ss_pred             CcccccC----HHHhcCccccCEEECCCCccccc-CHhHccCcccccEe
Confidence            9999887    44588999999999998764222 12334566777766

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.50  E-value=2.6e-14  Score=153.37  Aligned_cols=187  Identities=18%  Similarity=0.248  Sum_probs=125.6

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...++.|+|++|.|..   ++...+.++++|+.|+|++|+|+.++  ...+.++++|+.|+|++|++....+     ..
T Consensus        86 ~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~-----~~  155 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRT---IEIGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPS-----YA  155 (440)
T ss_dssp             SCSSCCEEECCSSCCCE---ECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCEEECCSCCCCEECT-----TT
T ss_pred             CCCCCCEEECCCCcCCc---cChhhccCCccCCEEECCCCcCCeeC--HhHhhccccCceeeCCCCcccccCH-----HH
Confidence            34678889999999888   67777888999999999999988876  3468889999999999998886552     34


Q ss_pred             hhcCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP  299 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~  299 (619)
                      +..+++|+.|+++.....+.+.            |....+.+ ...|     ....+.+|+.|+|++|.|..+++..|. 
T Consensus       156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~-  228 (440)
T 3zyj_A          156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIP-----NLTPLIKLDELDLSGNHLSAIRPGSFQ-  228 (440)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCC-----CCTTCSSCCEEECTTSCCCEECTTTTT-
T ss_pred             hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-cccc-----ccCCCcccCEEECCCCccCccChhhhc-
Confidence            6678888888776433222111            00111111 0111     133466778888888888877777776 


Q ss_pred             CCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          300 AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       300 ~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                       ++++|+.|+|++|.|..+.    ...+.++++|+.|++..|..- .-...++..+++|+.|
T Consensus       229 -~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          229 -GLMHLQKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERI  284 (440)
T ss_dssp             -TCTTCCEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEE
T ss_pred             -cCccCCEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEE
Confidence             7788888888888887776    455677788888888776431 1112334455555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.49  E-value=3.3e-14  Score=153.08  Aligned_cols=187  Identities=18%  Similarity=0.235  Sum_probs=124.0

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...++.|+|++|.|..   ++...+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|++....     ...
T Consensus        97 ~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~-----~~~  166 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQ---IEVGAFNGLASLNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIP-----SYA  166 (452)
T ss_dssp             TCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCSBCC--TTTSSSCTTCCEEECCSCCCCEEC-----TTT
T ss_pred             CCCCCCEEECCCCccCC---cChhhccCcccCCEEECCCCcCCccC--hhhhcccCCCCEEECCCCCcceeC-----HhH
Confidence            34778899999999888   66677788999999999999988876  456788999999999999888654     234


Q ss_pred             hhcCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP  299 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~  299 (619)
                      +..+++|+.|+++.....+.+.            |....+.+     ..+ .....+.+|+.|+|++|.|..+++..|. 
T Consensus       167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-----~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-  239 (452)
T 3zyi_A          167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-----KDM-PNLTPLVGLEELEMSGNHFPEIRPGSFH-  239 (452)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-----SSC-CCCTTCTTCCEEECTTSCCSEECGGGGT-
T ss_pred             HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-----ccc-ccccccccccEEECcCCcCcccCccccc-
Confidence            6778888888776432222111            00111111     011 1233466777778888877777776676 


Q ss_pred             CCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          300 AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       300 ~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                       ++++|+.|+|++|.|..+.    ...+.++++|+.|++..|.. +.-....+..+++|+.|
T Consensus       240 -~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          240 -GLSSLKKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             -TCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCC-SCCCTTSSTTCTTCCEE
T ss_pred             -CccCCCEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcC-CccChHHhccccCCCEE
Confidence             7778888888888777766    34567778888888777643 21112334445555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.49  E-value=7e-14  Score=140.70  Aligned_cols=170  Identities=19%  Similarity=0.234  Sum_probs=126.5

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|.+++|+|..   ++  -...+++|+.|+|++|.|..++    .+.++++|+.|+|++|.+....     ...+.
T Consensus        41 ~~L~~L~l~~~~i~~---~~--~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~-----~~~~~  106 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS---VQ--GIQYLPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQLQSLP-----NGVFD  106 (272)
T ss_dssp             TTCCEEECTTSCCCC---CT--TGGGCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSCCCCCC-----TTTTT
T ss_pred             cceeeeeeCCCCccc---cc--ccccCCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCccCccC-----hhHhc
Confidence            678889999999887   22  2467899999999999998864    6789999999999999988655     33467


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++..+-.+              .|.   .....+.+|+.|+|++|.|..+++..|.  .+++|+.|++++|
T Consensus       107 ~l~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n  167 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQS--------------LPD---GVFDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSYN  167 (272)
T ss_dssp             TCTTCCEEECTTSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSS
T ss_pred             CCcCCCEEECCCCcCCc--------------cCH---HHhccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCCC
Confidence            88999999887543221              111   0123477889999999999988888776  7889999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .|..+.    ...+.++++|+.|++..+..-+. .-..+..+++|+.|
T Consensus       168 ~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          168 QLQSLP----EGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYI  210 (272)
T ss_dssp             CCCCCC----TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEE
T ss_pred             CcCccC----HHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEE
Confidence            888777    44578888999998887753222 12344556666665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.48  E-value=5.2e-14  Score=139.79  Aligned_cols=169  Identities=17%  Similarity=0.172  Sum_probs=132.6

Q ss_pred             eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072          156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC  235 (619)
Q Consensus       156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l  235 (619)
                      .+.++++++++..   +|..+.   ++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+     ..+..+
T Consensus        16 ~~~l~~~~~~l~~---~p~~~~---~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l   82 (251)
T 3m19_A           16 KKEVDCQGKSLDS---VPSGIP---ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDL   82 (251)
T ss_dssp             GTEEECTTCCCSS---CCSCCC---TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred             CeEEecCCCCccc---cCCCCC---CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcCCccCH-----hHhccC
Confidence            4578899999998   775554   68999999999999887  3578999999999999999987653     346789


Q ss_pred             CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072          236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i  315 (619)
                      ++|+.|+++...-.+              .|.   .....+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|.|
T Consensus        83 ~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           83 TELGTLGLANNQLAS--------------LPL---GVFDHLTQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNTNQL  143 (251)
T ss_dssp             TTCCEEECTTSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCC
T ss_pred             CcCCEEECCCCcccc--------------cCh---hHhcccCCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcCCcC
Confidence            999999987543221              111   1123578999999999999999999887  899999999999999


Q ss_pred             CccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          316 EQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       316 ~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      ..++    ...+.++++|+.|++..|..-+.. ...+..+++|+.|
T Consensus       144 ~~~~----~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L  184 (251)
T 3m19_A          144 QSIP----AGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTI  184 (251)
T ss_dssp             CCCC----TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEE
T ss_pred             CccC----HHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEE
Confidence            9888    456889999999999988642221 2344556666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.47  E-value=7.6e-14  Score=140.46  Aligned_cols=156  Identities=24%  Similarity=0.263  Sum_probs=127.8

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|.|..   ++  ....+++|+.|+|++|.|+.++  ...+.++++|+.|+|++|.+....     ...+
T Consensus        62 l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~  129 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD---IS--ALKELTNLTYLILTGNQLQSLP--NGVFDKLTNLKELVLVENQLQSLP-----DGVF  129 (272)
T ss_dssp             CTTCCEEECTTSCCCC---CG--GGTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCC-----TTTT
T ss_pred             CCCCcEEECCCCCCCC---ch--hhcCCCCCCEEECCCCccCccC--hhHhcCCcCCCEEECCCCcCCccC-----HHHh
Confidence            4789999999999987   22  4578999999999999999876  456889999999999999998665     3356


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..+++|+.|+++...-.+              .|.   .....+.+|+.|+|++|.|..+++..|.  ++++|+.|++++
T Consensus       130 ~~l~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~  190 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQS--------------LPK---GVFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKDLRLYQ  190 (272)
T ss_dssp             TTCTTCCEEECCSSCCCC--------------CCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCS
T ss_pred             ccCCCCCEEECCCCccCc--------------cCH---HHhccCccCCEEECCCCCcCccCHHHhc--CCccCCEEECCC
Confidence            889999999987543211              111   1123578999999999999999998887  899999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      |.|..+.    ...+.++++|+.|++..|..
T Consensus       191 N~l~~~~----~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          191 NQLKSVP----DGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             SCCSCCC----TTTTTTCTTCCEEECCSSCB
T ss_pred             CcCCccC----HHHHhCCcCCCEEEccCCCc
Confidence            9999887    45688999999999998863

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=8.9e-14  Score=145.91  Aligned_cols=159  Identities=18%  Similarity=0.207  Sum_probs=121.2

Q ss_pred             CceeeeecccCCCCccccccccccC-CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSS-KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~-~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..++.|+|++|+|..   ++...+. ++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....     ...+
T Consensus        39 ~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~  108 (361)
T 2xot_A           39 SYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSSNHLHTLD-----EFLF  108 (361)
T ss_dssp             TTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEEC-----TTTT
T ss_pred             CCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccC--hhhccCCCCCCEEECCCCcCCcCC-----HHHh
Confidence            347889999999998   6666665 9999999999999999887  457889999999999999988765     2346


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC-CCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP-AEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~-~~L~~L~~LnLs  311 (619)
                      ..+++|+.|+++...-..             -.|    .....+.+|+.|+|++|.|..+|...|.. ..+++|+.|+|+
T Consensus       109 ~~l~~L~~L~L~~N~i~~-------------~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A          109 SDLQALEVLLLYNNHIVV-------------VDR----NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             TTCTTCCEEECCSSCCCE-------------ECT----TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             CCCcCCCEEECCCCcccE-------------ECH----HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            788999999887433211             001    12335788999999999999999888742 368999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCC--CccccccCCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPC--LQSLGVDIPGP  343 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~--L~sL~ld~p~~  343 (619)
                      +|.|..++    ...+..++.  |+.|++..|+.
T Consensus       172 ~N~l~~l~----~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          172 SNKLKKLP----LTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             SSCCCCCC----HHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCCCCccC----HHHhhhccHhhcceEEecCCCc
Confidence            99999888    445666676  37788877763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.44  E-value=1.6e-13  Score=140.29  Aligned_cols=154  Identities=21%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|.|..   ++...+..+++|+.|+|++|.|+.++..    .++++|+.|+|++|.+.....      .+.
T Consensus        31 ~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~------~~~   97 (290)
T 1p9a_G           31 KDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLSHNQLQSLPL------LGQ   97 (290)
T ss_dssp             TTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCEEECCSSCCSSCCC------CTT
T ss_pred             CCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCCccCcccCC----CCCCcCCEEECCCCcCCcCch------hhc
Confidence            456788888888877   5566677888888888888888887632    678888888888888875542      256


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++..+-.+              .|.   .....+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|
T Consensus        98 ~l~~L~~L~l~~N~l~~--------------l~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N  158 (290)
T 1p9a_G           98 TLPALTVLDVSFNRLTS--------------LPL---GALRGLGELQELYLKGNELKTLPPGLLT--PTPKLEKLSLANN  158 (290)
T ss_dssp             TCTTCCEEECCSSCCCC--------------CCS---STTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCCcCcc--------------cCH---HHHcCCCCCCEEECCCCCCCccChhhcc--cccCCCEEECCCC
Confidence            77888888776433211              110   1123577888888888888888888776  7888888888888


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      .|..++    ...+.++++|+.|++..|..
T Consensus       159 ~l~~l~----~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          159 NLTELP----AGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CCSCCC----TTTTTTCTTCCEEECCSSCC
T ss_pred             cCCccC----HHHhcCcCCCCEEECCCCcC
Confidence            888777    45567788888888877753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.44  E-value=5.2e-13  Score=136.37  Aligned_cols=144  Identities=24%  Similarity=0.291  Sum_probs=85.6

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|++++|+|..   ++  -...+++|+.|+|++|+|..++.    +.++++|+.|+|++|.+....       .+.
T Consensus        46 ~~L~~L~l~~~~i~~---~~--~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~-------~l~  109 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS---VQ--GIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLS-------SLK  109 (291)
T ss_dssp             HTCCEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGG-------GGT
T ss_pred             CcccEEEccCCCccc---Ch--hHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCCh-------hhc
Confidence            456677777777766   22  14556777777777777777653    667777777777777766543       156


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++..+-..                  + .....+.+|+.|+|++|.|..++  .+.  .+++|+.|++++|
T Consensus       110 ~l~~L~~L~L~~n~i~~------------------~-~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~N  166 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISD------------------I-NGLVHLPQLESLYLGNNKITDIT--VLS--RLTKLDTLSLEDN  166 (291)
T ss_dssp             TCTTCCEEECTTSCCCC------------------C-GGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSS
T ss_pred             cCCCCCEEECCCCcCCC------------------C-hhhcCCCCCCEEEccCCcCCcch--hhc--cCCCCCEEEccCC
Confidence            67777777665432211                  0 01123556666666666666652  232  5666666666666


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .|.++.    .  +.++++|+.|+++.|.
T Consensus       167 ~l~~~~----~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          167 QISDIV----P--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CCCCCG----G--GTTCTTCCEEECCSSC
T ss_pred             ccccch----h--hcCCCccCEEECCCCc
Confidence            666554    1  5566666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.44  E-value=1.2e-13  Score=135.38  Aligned_cols=62  Identities=21%  Similarity=0.234  Sum_probs=43.5

Q ss_pred             cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+.+|+.|+|++|.|..+++..|.  ++++|+.|+|++|.|..+.    ...+..+++|+.|++..|+
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRVDAFQ--DLHNLNLLSLYDNKLQTIA----KGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCCCCEeCHHHcC--CCCCCCEEECCCCcCCEEC----HHHHhCCCCCCEEEeCCCC
Confidence            356777777777777777776666  6777777777777777766    3446667777777776665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.44  E-value=1.2e-13  Score=140.28  Aligned_cols=170  Identities=21%  Similarity=0.199  Sum_probs=100.5

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|+|..   +|...+.++++|+.|+|++|.|..+......+.++++|+.|+|++|.+......      +.
T Consensus        28 ~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~------~~   98 (306)
T 2z66_A           28 SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN------FL   98 (306)
T ss_dssp             TTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE------EE
T ss_pred             CCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh------cC
Confidence            467889999999887   777778889999999999999887654445667788899999998887765421      45


Q ss_pred             cCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCcccccc-CcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN-LVNKAFSPA  300 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~-Lp~~~f~~~  300 (619)
                      .+++|+.|+++...-.+...            |....+.+....|    .....+.+|+.|+|++|.+.. ..+..|.  
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--  172 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFT--  172 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST----TTTTTCTTCCEEECTTCEEGGGEECSCCT--
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch----hhcccCcCCCEEECCCCccccccchhHHh--
Confidence            57777777665432211000            0011110000001    112234556666666666654 2233333  


Q ss_pred             CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+++|+.|++++|.|..+.    +..+.++++|+.|++..+.
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSC
T ss_pred             hCcCCCEEECCCCCcCCcC----HHHhcCCCCCCEEECCCCc
Confidence            5566666666666665543    2345555666666665554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.43  E-value=5.8e-13  Score=136.89  Aligned_cols=160  Identities=21%  Similarity=0.293  Sum_probs=96.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|.|.+   ++.  ...+++|+.|+|++|+|..++    .+.++++|+.|+|++|.+....       .+.
T Consensus        63 ~~L~~L~L~~n~i~~---~~~--~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~-------~l~  126 (308)
T 1h6u_A           63 NNLIGLELKDNQITD---LAP--LKNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQITDVT-------PLA  126 (308)
T ss_dssp             TTCCEEECCSSCCCC---CGG--GTTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSCCCCCG-------GGT
T ss_pred             CCCCEEEccCCcCCC---Chh--HccCCCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCCCCCch-------hhc
Confidence            445555566665555   222  455556666666666655543    3555666666666666555432       045


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++...-.+                  +. ....+.+|+.|+|++|.|..++.  +.  .+++|+.|++++|
T Consensus       127 ~l~~L~~L~l~~n~l~~------------------~~-~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n  183 (308)
T 1h6u_A          127 GLSNLQVLYLDLNQITN------------------IS-PLAGLTNLQYLSIGNAQVSDLTP--LA--NLSKLTTLKADDN  183 (308)
T ss_dssp             TCTTCCEEECCSSCCCC------------------CG-GGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCccCc------------------Cc-cccCCCCccEEEccCCcCCCChh--hc--CCCCCCEEECCCC
Confidence            55666665554322110                  00 12246788888888888888776  44  7888888888888


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .|.+++      .+.++++|+.|+++.+..-+..   -+..+++|+.|
T Consensus       184 ~l~~~~------~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L  222 (308)
T 1h6u_A          184 KISDIS------PLASLPNLIEVHLKNNQISDVS---PLANTSNLFIV  222 (308)
T ss_dssp             CCCCCG------GGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEE
T ss_pred             ccCcCh------hhcCCCCCCEEEccCCccCccc---cccCCCCCCEE
Confidence            888776      2678888888888877543222   25666776665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.43  E-value=1.2e-13  Score=148.99  Aligned_cols=174  Identities=22%  Similarity=0.185  Sum_probs=130.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|.|..   ++...+.++++|+.|+|++|.|..+.  ...+.++++|+.|+|++|.+....     ...+.
T Consensus        32 ~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~  101 (477)
T 2id5_A           32 TETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLIP-----LGVFT  101 (477)
T ss_dssp             TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCC-----TTSST
T ss_pred             CCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCcCCccC-----ccccc
Confidence            467889999999998   66777889999999999999999875  357899999999999999988665     33467


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++...-.+.             .|    .....+.+|+.|+|++|.|..+++..|.  ++++|+.|+|++|
T Consensus       102 ~l~~L~~L~Ls~n~i~~~-------------~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n  162 (477)
T 2id5_A          102 GLSNLTKLDISENKIVIL-------------LD----YMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKC  162 (477)
T ss_dssp             TCTTCCEEECTTSCCCEE-------------CT----TTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESC
T ss_pred             CCCCCCEEECCCCccccC-------------Ch----hHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCC
Confidence            899999999875432210             01    1123577889999999999888887777  8889999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .+..+.    ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus       163 ~l~~~~----~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L  205 (477)
T 2id5_A          163 NLTSIP----TEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVL  205 (477)
T ss_dssp             CCSSCC----HHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEE
T ss_pred             cCcccC----hhHhcccCCCcEEeCCCCcCcEe-ChhhcccCccccee
Confidence            888877    56678888888888877653211 11223445555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.43  E-value=2.8e-13  Score=139.02  Aligned_cols=157  Identities=18%  Similarity=0.142  Sum_probs=104.1

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHH--hcccccceeecCCCcccccccchhhhHH
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEV--TKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l--~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      ..+++|++++|+|..   ++...+.++++|+.|+|++|++.........+  .++++|+.|+|++|.+....  .+...+
T Consensus       149 ~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~  223 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN---FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--GVCSAL  223 (312)
T ss_dssp             TTCCEEEEESCSCCC---CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHH
T ss_pred             CCCcEEEeeCCCCcc---chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHH
Confidence            567777777777776   56566667788888888888765432223333  77788888888888776443  233455


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      +..+++|+.|+++...-.+.             .|.   .....+.+|+.|+|++|.|..+|..++     ++|+.|+|+
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~-------------~~~---~~~~~l~~L~~L~Ls~N~l~~ip~~~~-----~~L~~L~Ls  282 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDA-------------AGA---PSCDWPSQLNSLNLSFTGLKQVPKGLP-----AKLSVLDLS  282 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSS-------------CCC---SCCCCCTTCCEEECTTSCCSSCCSSCC-----SEEEEEECC
T ss_pred             HhcCCCCCEEECCCCcCCcc-------------cch---hhhhhcCCCCEEECCCCccChhhhhcc-----CCceEEECC
Confidence            56778888877764332210             000   011235688888888888888876444     678888888


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|+|..++      .+..+++|+.|+++.|.
T Consensus       283 ~N~l~~~p------~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          283 YNRLDRNP------SPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SSCCCSCC------CTTTSCEEEEEECTTCT
T ss_pred             CCCCCCCh------hHhhCCCCCEEeccCCC
Confidence            88888775      26778888888887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.42  E-value=2.8e-13  Score=138.43  Aligned_cols=169  Identities=22%  Similarity=0.205  Sum_probs=134.7

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.+++++++|..   +|..+.   ++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+.....       .
T Consensus         9 l~~l~~l~~~~~~l~~---ip~~~~---~~l~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-------~   73 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA---LPPDLP---KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELTKLQV-------D   73 (290)
T ss_dssp             STTCCEEECTTSCCSS---CCSCCC---TTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSCCCEEEC-------C
T ss_pred             cCCccEEECCCCCCCc---CCCCCC---CCCCEEEcCCCcCCccC--HHHhhcCCCCCEEECCCCccCcccC-------C
Confidence            3567889999999998   776554   78999999999999886  4678999999999999999987752       2


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..+++|+.|+++...-.              ..|.    ....+.+|+.|+|++|+|..+|+..|.  ++++|+.|+|++
T Consensus        74 ~~l~~L~~L~Ls~N~l~--------------~l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~  133 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ--------------SLPL----LGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKG  133 (290)
T ss_dssp             SCCTTCCEEECCSSCCS--------------SCCC----CTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTT
T ss_pred             CCCCcCCEEECCCCcCC--------------cCch----hhccCCCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCC
Confidence            67999999998754321              1221    223578999999999999999999897  899999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      |.|..++    ...+.++++|+.|++..|..- .....++..+++|+.|
T Consensus       134 N~l~~~~----~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          134 NELKTLP----PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL  177 (290)
T ss_dssp             SCCCCCC----TTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEE
T ss_pred             CCCCccC----hhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEE
Confidence            9999888    456789999999999988642 2112345566777666

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=2e-13  Score=131.34  Aligned_cols=131  Identities=22%  Similarity=0.320  Sum_probs=75.0

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .+++|++++|+|..   ++...+..+++|+.|+|++|+|+.++  ...+.++++|+.|+|++|.+....+     ..+. 
T Consensus        29 ~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~-   97 (208)
T 2o6s_A           29 QTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQSLPN-----GVFD-   97 (208)
T ss_dssp             TCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTTT-
T ss_pred             CCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCccCH-----hHhc-
Confidence            45555666666555   44444555566666666666555543  2334555666666666665543321     1122 


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072          235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP  314 (619)
Q Consensus       235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~  314 (619)
                                                              .+.+|+.|+|++|.|..++...|.  .+++|+.|++++|.
T Consensus        98 ----------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           98 ----------------------------------------KLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQ  135 (208)
T ss_dssp             ----------------------------------------TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred             ----------------------------------------CccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCc
Confidence                                                    355666666666766666666555  66667777777776


Q ss_pred             CCccchHHHHHHHhCCCCCccccccCCC
Q 007072          315 LEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |..+.    ...+.++++|+.|++..|.
T Consensus       136 l~~~~----~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          136 LKSVP----DGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CSCCC----TTTTTTCTTCCEEECCSCC
T ss_pred             cceeC----HHHhccCCCccEEEecCCC
Confidence            66655    2345666666666666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.42  E-value=1.8e-13  Score=147.36  Aligned_cols=189  Identities=18%  Similarity=0.164  Sum_probs=135.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|+|..   ++...+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....     ...+.
T Consensus        75 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~  144 (452)
T 3zyi_A           75 SNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLTVIP-----SGAFE  144 (452)
T ss_dssp             TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSBCC-----TTTSS
T ss_pred             CCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcCCccC-----hhhhc
Confidence            568899999999998   77777889999999999999999886  468899999999999999998765     33467


Q ss_pred             cCCccccccccccccccccccccc--cccc--CC---CCCCcccc-CCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFC--GEVY--DK---DNPSSLCL-RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL  305 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc--~~~~--~~---~~p~~l~~-~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L  305 (619)
                      .+++|+.|+++...-..--.-.|.  ...-  +.   +.-..+.. ....+.+|+.|+|++|.|..+|.  +.  .+++|
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L  220 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT--PLVGL  220 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CT--TCTTC
T ss_pred             ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--cc--ccccc
Confidence            899999999876433210000000  0000  00   00111111 23357889999999999998864  33  78999


Q ss_pred             cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       306 ~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +.|+|++|.|..+.    ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus       221 ~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          221 EELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVEL  271 (452)
T ss_dssp             CEEECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred             cEEECcCCcCcccC----cccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEE
Confidence            99999999998876    46688999999999987764222 12335567777776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=8.8e-14  Score=144.51  Aligned_cols=176  Identities=19%  Similarity=0.166  Sum_probs=110.6

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|+|..   ++...+.++++|+.|+|++|+|+.++  ...+.++++|+.|+|++|++......    ..
T Consensus        74 ~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~----~~  144 (353)
T 2z80_A           74 RCVNLQALVLTSNGINT---IEEDSFSSLGSLEHLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGET----SL  144 (353)
T ss_dssp             TCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSS----CS
T ss_pred             cCCCCCEEECCCCccCc---cCHhhcCCCCCCCEEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCch----hh
Confidence            35789999999999998   66677789999999999999999876  45689999999999999998866520    23


Q ss_pred             hhcCCccccccccccccccccc------------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWA------------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSP  299 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~------------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~  299 (619)
                      +..+++|+.|+++.....+.+.            +...++.+..-.|.    ....+.+|+.|+|++|.+..+|...+. 
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~~-  219 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK----SLKSIQNVSHLILHMKQHILLLEIFVD-  219 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT----TTTTCSEEEEEEEECSCSTTHHHHHHH-
T ss_pred             hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH----HHhccccCCeecCCCCccccchhhhhh-
Confidence            6788999998886542222110            00111111000111    112344555555555555555544443 


Q ss_pred             CCCCCCcccccCCCCCCccch---------------------------HHHHHHHhCCCCCccccccCCC
Q 007072          300 AEMPSLSHLNIRGNPLEQNSV---------------------------RELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       300 ~~L~~L~~LnLs~N~i~~i~~---------------------------~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                       .+++|+.|++++|.+..+..                           ..++..+.++++|+.|++..|.
T Consensus       220 -~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          220 -VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             -HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             -hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence             45566666666665554321                           1234456666667776666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=1.9e-13  Score=136.94  Aligned_cols=137  Identities=22%  Similarity=0.273  Sum_probs=97.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|+|..   ++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus        28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~   97 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLAL-----GAFS   97 (276)
T ss_dssp             TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT-----TTTT
T ss_pred             CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCccCccCh-----hhhc
Confidence            467889999999988   66667788999999999999998876  3568889999999999999887653     3467


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~  312 (619)
                      .+++|+.|+++.....+.              +.   .....+.+|+.|+|++|.+..++ +..|.  ++++|+.|++++
T Consensus        98 ~l~~L~~L~l~~n~l~~~--------------~~---~~~~~l~~L~~L~l~~n~l~~~~l~~~~~--~l~~L~~L~Ls~  158 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASL--------------EN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSS  158 (276)
T ss_dssp             TCTTCCEEECTTSCCCCS--------------TT---CCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCS
T ss_pred             CCccccEEECCCCCcccc--------------Cc---hhcccCCCCCEEECcCCccceecCchhhc--cCCCCCEEECCC
Confidence            788999888764332210              00   01224566777777777777643 33443  567777777777


Q ss_pred             CCCCccc
Q 007072          313 NPLEQNS  319 (619)
Q Consensus       313 N~i~~i~  319 (619)
                      |.|..+.
T Consensus       159 N~l~~~~  165 (276)
T 2z62_A          159 NKIQSIY  165 (276)
T ss_dssp             SCCCEEC
T ss_pred             CCCCcCC
Confidence            7776655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.42  E-value=1.7e-13  Score=146.88  Aligned_cols=189  Identities=19%  Similarity=0.170  Sum_probs=134.6

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|+|..   ++...+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus        64 ~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~  133 (440)
T 3zyj_A           64 TNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNRLTTIPN-----GAFV  133 (440)
T ss_dssp             TTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSSCCSSCCT-----TTSC
T ss_pred             CCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccC--hhhccCCccCCEEECCCCcCCeeCH-----hHhh
Confidence            567889999999998   77778889999999999999999887  4689999999999999999987653     3467


Q ss_pred             cCCcccccccccccccccc--cccccccc--cCC---CCCCcccc-CCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072          234 GCPKLEIYNSNFTINFGEW--ALGFCGEV--YDK---DNPSSLCL-RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL  305 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~--~l~fc~~~--~~~---~~p~~l~~-~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L  305 (619)
                      .+++|+.|+++...-..-.  .+.-+...  ++.   +.-..+.. ....+.+|+.|+|++|.|..+|.  +.  .+++|
T Consensus       134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L  209 (440)
T 3zyj_A          134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LT--PLIKL  209 (440)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CT--TCSSC
T ss_pred             ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cC--CCccc
Confidence            8999999998754322100  00000000  000   00111111 23357888999999999998874  33  78899


Q ss_pred             cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       306 ~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +.|+|++|.|..+.    ...+.++++|+.|++..+..-.. ....+..+++|+.|
T Consensus       210 ~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          210 DELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEI  260 (440)
T ss_dssp             CEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEE
T ss_pred             CEEECCCCccCccC----hhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEE
Confidence            99999999988876    45678889999999887753211 12334566777766

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.42  E-value=1.9e-13  Score=134.08  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+.+|+.|+|++|.|..+++..|.  .+++|+.|+|++|.|..+.    +..+.++++|+.|++..|.
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYDNQITTVA----PGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSST--TCTTCSEEECTTSCCCCBC----TTTTTTCTTCCEEECCSCC
T ss_pred             CCcCCCEEECCCCcCCeECHhHcC--CCccCCEEECCCCcCCEEC----HHHhcCCCCCCEEEecCcC
Confidence            366777777788887777776666  7777888888888777765    3456677777777777665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.41  E-value=2.3e-13  Score=153.74  Aligned_cols=192  Identities=20%  Similarity=0.209  Sum_probs=130.3

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|+|++|.|..   ++.  ...+++|+.|+|++|.|..++    .+.+|++|+.|+|++|.+....       .+
T Consensus        64 l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~-------~l  127 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTD---IKP--LTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSLSLEHNGISDIN-------GL  127 (605)
T ss_dssp             CTTCCEEECTTSCCCC---CGG--GGGCTTCCEEECCSSCCCCCT----TSTTCTTCCEEECTTSCCCCCG-------GG
T ss_pred             CCCCCEEEeeCCCCCC---Chh--hccCCCCCEEECcCCCCCCCh----hhccCCCCCEEEecCCCCCCCc-------cc
Confidence            3567777777777777   232  567777788888888777764    4677777888888888777643       15


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..|++|+.|+++.....+                  + .....+.+|+.|+|++|.|..+++  +.  ++++|+.|+|++
T Consensus       128 ~~l~~L~~L~Ls~N~l~~------------------l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~  184 (605)
T 1m9s_A          128 VHLPQLESLYLGNNKITD------------------I-TVLSRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSK  184 (605)
T ss_dssp             GGCTTCSEEECCSSCCCC------------------C-GGGGSCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCS
T ss_pred             cCCCccCEEECCCCccCC------------------c-hhhcccCCCCEEECcCCcCCCchh--hc--cCCCCCEEECcC
Confidence            677788877776433221                  1 122357899999999999999877  54  899999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCCCCCc--hhHHHhhhcCccccccCccchhh-hccCcceeecccCCCCCCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGE--SAIEILESLPTLCTLNGVTASKI-LEEGKHVIDSMLQPRLPEWS  389 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~--~~~~il~~lp~L~~LNg~~~s~~-~~~~~~~~~~~~~~~~~~~~  389 (619)
                      |.|.+++      .+..+++|+.|++..+.....  .....+..++.|..++|..++.. +.....+....+...+|.+.
T Consensus       185 N~i~~l~------~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~  258 (605)
T 1m9s_A          185 NHISDLR------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT  258 (605)
T ss_dssp             SCCCBCG------GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCC
T ss_pred             CCCCCCh------HHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCcceecccccc
Confidence            9998875      478999999999987643211  11233345566777777776642 23344444545555566553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.41  E-value=3.7e-14  Score=139.41  Aligned_cols=152  Identities=14%  Similarity=0.154  Sum_probs=100.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCc-ccchhhHHHHHhcccccceeecCC-CcccccccchhhhHH
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNK-LETVEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCMEDAI  231 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~Nk-L~~~~~v~~~l~~L~~Lk~L~Ls~-Npi~~~~~~~~~~~i  231 (619)
                      ..++.|++++|+|..   ++...+..+++|+.|+|++|+ |+.++  ...+.++++|+.|+|++ |.+....+     ..
T Consensus        31 ~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~  100 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDP-----DA  100 (239)
T ss_dssp             TTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCCEECT-----TS
T ss_pred             CcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCeeEcCH-----HH
Confidence            368899999999998   777778889999999999996 98886  34788999999999998 99886653     34


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCccc---ccccCcc-ccccCcccccCCCCCCCCc-
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT---SLDLSNR-CIHNLVNKAFSPAEMPSLS-  306 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~---~LdLS~N-~I~~Lp~~~f~~~~L~~L~-  306 (619)
                      +..+++|+.|+++...-.+              .|.     ...+.+|+   .|+|++| .|..+|...|.  ++++|+ 
T Consensus       101 f~~l~~L~~L~l~~n~l~~--------------lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--~l~~L~~  159 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM--------------FPD-----LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETL  159 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS--------------CCC-----CTTCCBCCSEEEEEEESCTTCCEECTTTTT--TTBSSEE
T ss_pred             hCCCCCCCEEeCCCCCCcc--------------ccc-----cccccccccccEEECCCCcchhhcCccccc--chhccee
Confidence            6788999998886543221              111     11233333   5555555 55555555554  555555 


Q ss_pred             ccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          307 HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       307 ~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      .|++++|.|..++    ...+.. ++|+.|++..+
T Consensus       160 ~L~l~~n~l~~i~----~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          160 TLKLYNNGFTSVQ----GYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEECCSCCCCEEC----TTTTTT-CEEEEEECTTC
T ss_pred             EEEcCCCCCcccC----HhhcCC-CCCCEEEcCCC
Confidence            5555555555544    122333 45555555555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.41  E-value=1.1e-13  Score=140.54  Aligned_cols=160  Identities=23%  Similarity=0.204  Sum_probs=124.7

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|.|..   ++.. +..+++|+.|+|++|.|..++. ...+.++++|+.|+|++|.+....     ...
T Consensus        76 ~~~~L~~L~Ls~n~i~~---l~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-----~~~  145 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVIT---MSSN-FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAF-----NGI  145 (306)
T ss_dssp             SCSCCCEEECCSCSEEE---EEEE-EETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECS-----TTT
T ss_pred             cccccCEEECCCCcccc---Chhh-cCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccc-----hhh
Confidence            45789999999999887   4443 5678999999999999988762 246888999999999999987654     234


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      +..+++|+.|+++...-.+.            ..|    .....+.+|+.|+|++|.|..+++..|.  .+++|+.|+++
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~------------~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~  207 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQEN------------FLP----DIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMS  207 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGG------------EEC----SCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECT
T ss_pred             cccCcCCCEEECCCCccccc------------cch----hHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECC
Confidence            67889999998874332110            011    1223578999999999999999887786  89999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +|.|.++.    ...+.++++|+.|++..|..
T Consensus       208 ~N~l~~~~----~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          208 HNNFFSLD----TFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             TSCCSBCC----SGGGTTCTTCCEEECTTSCC
T ss_pred             CCccCccC----hhhccCcccCCEeECCCCCC
Confidence            99998887    34578899999999988864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.41  E-value=3.3e-13  Score=137.83  Aligned_cols=170  Identities=20%  Similarity=0.178  Sum_probs=133.3

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|+|..   ++.  ...+++|+.|+|++|+|..++    .+.++++|+.|+|++|.+....       .+
T Consensus        67 l~~L~~L~L~~n~l~~---~~~--l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~i~~~~-------~l  130 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTD---IKP--LANLKNLGWLFLDENKVKDLS----SLKDLKKLKSLSLEHNGISDIN-------GL  130 (291)
T ss_dssp             CTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCGG----GGTTCTTCCEEECTTSCCCCCG-------GG
T ss_pred             CCCCCEEEccCCccCC---Ccc--cccCCCCCEEECCCCcCCCCh----hhccCCCCCEEECCCCcCCCCh-------hh
Confidence            3789999999999998   333  789999999999999999976    3899999999999999998763       26


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..+++|+.|+++..+-.+                  + .....+.+|+.|+|++|.|..+++  +.  .+++|+.|++++
T Consensus       131 ~~l~~L~~L~l~~n~l~~------------------~-~~l~~l~~L~~L~L~~N~l~~~~~--l~--~l~~L~~L~L~~  187 (291)
T 1h6t_A          131 VHLPQLESLYLGNNKITD------------------I-TVLSRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSK  187 (291)
T ss_dssp             GGCTTCCEEECCSSCCCC------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCS
T ss_pred             cCCCCCCEEEccCCcCCc------------------c-hhhccCCCCCEEEccCCccccchh--hc--CCCccCEEECCC
Confidence            789999999987543221                  1 122357899999999999999987  54  899999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCCC--CCchhHHHhhhcCccccccCccch
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP--LGESAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~--l~~~~~~il~~lp~L~~LNg~~~s  367 (619)
                      |.|.+++      .+.++++|+.|++..+..  ...+....+..++.+..++|..++
T Consensus       188 N~i~~l~------~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~~l~~l~~~~i~  238 (291)
T 1h6t_A          188 NHISDLR------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT  238 (291)
T ss_dssp             SCCCBCG------GGTTCTTCSEEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCC
T ss_pred             CcCCCCh------hhccCCCCCEEECcCCcccCCccccccccEEcceEECCCCCCcC
Confidence            9999876      388999999999987642  111222333445566667776665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.41  E-value=1.6e-13  Score=142.57  Aligned_cols=175  Identities=19%  Similarity=0.146  Sum_probs=130.2

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|++++|+|..   ++...+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....     ...+.
T Consensus        52 ~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~  121 (353)
T 2z80_A           52 EAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIE--EDSFSSLGSLEHLDLSYNYLSNLS-----SSWFK  121 (353)
T ss_dssp             TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCSSCC-----HHHHT
T ss_pred             ccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccC--HhhcCCCCCCCEEECCCCcCCcCC-----HhHhC
Confidence            478999999999998   77777889999999999999999875  357899999999999999998654     44578


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCcc-ccccCcccccCCCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR-CIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N-~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      .+++|+.|+++...-..              .|.  ......+.+|+.|+|++| .+..+++..|.  ++++|+.|++++
T Consensus       122 ~l~~L~~L~L~~n~l~~--------------l~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~l~~  183 (353)
T 2z80_A          122 PLSSLTFLNLLGNPYKT--------------LGE--TSLFSHLTKLQILRVGNMDTFTKIQRKDFA--GLTFLEELEIDA  183 (353)
T ss_dssp             TCTTCSEEECTTCCCSS--------------SCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEE
T ss_pred             CCccCCEEECCCCCCcc--------------cCc--hhhhccCCCCcEEECCCCccccccCHHHcc--CCCCCCEEECCC
Confidence            89999999987543211              111  001224678888888888 57777777776  788888888888


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      |.+..+.    +..+.++++|+.|++..+.. +.........+++|+.|
T Consensus       184 n~l~~~~----~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          184 SDLQSYE----PKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECL  227 (353)
T ss_dssp             TTCCEEC----TTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEE
T ss_pred             CCcCccC----HHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEE
Confidence            8887664    34577788888888877653 33233444556777666

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.41  E-value=2.2e-13  Score=141.41  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=99.4

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+..|+|++|+|..   +|..+.. +++|+.|+|++|.|..++   ..+.++++|+.|+|++|.+....      ..+
T Consensus        80 ~~~l~~L~L~~n~l~~---lp~~l~~-l~~L~~L~L~~n~l~~lp---~~~~~l~~L~~L~Ls~n~l~~lp------~~l  146 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ---FPDQAFR-LSHLQHMTIDAAGLMELP---DTMQQFAGLETLTLARNPLRALP------ASI  146 (328)
T ss_dssp             STTCCEEEEESSCCSS---CCSCGGG-GTTCSEEEEESSCCCCCC---SCGGGGTTCSEEEEESCCCCCCC------GGG
T ss_pred             ccceeEEEccCCCchh---cChhhhh-CCCCCEEECCCCCccchh---HHHhccCCCCEEECCCCccccCc------HHH
Confidence            4678899999999987   6666554 999999999999999776   56789999999999999988543      236


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..+++|+.|+++.....+.....++...    .+    .....+.+|+.|+|++|.|..+|..+.   ++++|+.|+|++
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~----~~----~~~~~l~~L~~L~L~~n~l~~lp~~l~---~l~~L~~L~L~~  215 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTD----AS----GEHQGLVNLQSLRLEWTGIRSLPASIA---NLQNLKSLKIRN  215 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-----C----CCEEESTTCCEEEEEEECCCCCCGGGG---GCTTCCEEEEES
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhcc----ch----hhhccCCCCCEEECcCCCcCcchHhhc---CCCCCCEEEccC
Confidence            7899999998876443322111111000    00    001124455555555555555544322   455555555555


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      |.|..++     ..+.++++|+.|++..+
T Consensus       216 N~l~~l~-----~~l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          216 SPLSALG-----PAIHHLPKLEELDLRGC  239 (328)
T ss_dssp             SCCCCCC-----GGGGGCTTCCEEECTTC
T ss_pred             CCCCcCc-----hhhccCCCCCEEECcCC
Confidence            5555443     12445555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=3.1e-13  Score=133.13  Aligned_cols=152  Identities=15%  Similarity=0.115  Sum_probs=104.7

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      ..+.++.+++++..   +|..+.   ++|+.|+|++|.|..+.  ...+.++++|+.|+|++|.+....     ...+..
T Consensus        20 s~~~v~c~~~~l~~---ip~~~~---~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~N~l~~i~-----~~~~~~   86 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS---VPAGIP---TNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLGALP-----VGVFDS   86 (229)
T ss_dssp             ETTEEECTTSCCSS---CCSCCC---TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCC-----TTTTTT
T ss_pred             eCCEeEccCCCcCc---cCCCCC---CCCCEEEcCCCccCccC--HHHhhCccCCcEEECCCCCCCCcC-----hhhccc
Confidence            34457777777776   554433   77778888888777764  346777788888888888775543     234566


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072          235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP  314 (619)
Q Consensus       235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~  314 (619)
                      +++|+.|+++..+-.              ..|.   .....+.+|+.|+|++|.|..+|..+.   .+++|+.|+|++|.
T Consensus        87 l~~L~~L~Ls~N~l~--------------~l~~---~~~~~l~~L~~L~Ls~N~l~~lp~~~~---~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLT--------------VLPS---AVFDRLVHLKELFMCCNKLTELPRGIE---RLTHLTHLALDQNQ  146 (229)
T ss_dssp             CTTCCEEECCSSCCC--------------CCCT---TTTTTCTTCCEEECCSSCCCSCCTTGG---GCTTCSEEECCSSC
T ss_pred             CCCcCEEECCCCcCC--------------ccCh---hHhCcchhhCeEeccCCcccccCcccc---cCCCCCEEECCCCc
Confidence            777777776643211              0111   112347788899999999998887654   68889999999998


Q ss_pred             CCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          315 LEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      |..++    ...+.++++|+.|++..|+.
T Consensus       147 l~~~~----~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          147 LKSIP----HGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCCCC----TTTTTTCTTCCEEECTTSCB
T ss_pred             CCccC----HHHHhCCCCCCEEEeeCCCc
Confidence            88877    35578888888888887753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.39  E-value=7.6e-13  Score=135.42  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=26.4

Q ss_pred             CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      .+|+.|+|++|+|..+|...+     ++|+.|+|++|.|..++      .+..+++|+.|+++.|
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~-----~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP-----AKLRVLDLSSNRLNRAP------QPDELPEVDNLTLDGN  304 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC-----SCCSCEECCSCCCCSCC------CTTSCCCCSCEECSST
T ss_pred             CcCCEEECCCCCCCchhhhhc-----CCCCEEECCCCcCCCCc------hhhhCCCccEEECcCC
Confidence            355555555555555544322     35555555555555443      1344455555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.38  E-value=3.5e-13  Score=129.23  Aligned_cols=149  Identities=19%  Similarity=0.252  Sum_probs=114.0

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|++++|+|.+   ++  -...+++|+.|+|++|.+..++    .+.++++|+.|+|++|.+....+.     .+
T Consensus        43 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~-----~l  108 (197)
T 4ezg_A           43 MNSLTYITLANINVTD---LT--GIEYAHNIKDLTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKIP-----NL  108 (197)
T ss_dssp             HHTCCEEEEESSCCSC---CT--TGGGCTTCSEEEEESCCCSCCG----GGTTCTTCCEEEEECTTCBGGGSC-----CC
T ss_pred             cCCccEEeccCCCccC---hH--HHhcCCCCCEEEccCCCCCcch----hhhcCCCCCEEEeECCccCcccCh-----hh
Confidence            3678899999999987   44  2568899999999999998875    678899999999999998864322     25


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccc-cccCcccccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~-I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      ..+++|+.|+++.++-.+.             .|    .....+.+|+.|+|++|. +..+|  .+.  .+++|+.|+++
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~-------------~~----~~l~~l~~L~~L~L~~n~~i~~~~--~l~--~l~~L~~L~l~  167 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDS-------------IL----TKINTLPKVNSIDLSYNGAITDIM--PLK--TLPELKSLNIQ  167 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGG-------------GH----HHHTTCSSCCEEECCSCTBCCCCG--GGG--GCSSCCEEECT
T ss_pred             cCCCCCCEEEecCCccCcH-------------hH----HHHhhCCCCCEEEccCCCCccccH--hhc--CCCCCCEEECC
Confidence            6789999988875433210             01    112247789999999998 88886  243  78999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|.|.+++      .+.++++|+.|++..|.
T Consensus       168 ~n~i~~~~------~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          168 FDGVHDYR------GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             TBCCCCCT------TGGGCSSCCEEEECBC-
T ss_pred             CCCCcChH------HhccCCCCCEEEeeCcc
Confidence            99988765      47788999999888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.38  E-value=2.5e-13  Score=142.74  Aligned_cols=137  Identities=17%  Similarity=0.267  Sum_probs=87.3

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|+++++.|..   +|...+..+++|+.|+|++|.|+.++  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus        45 ~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~  114 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQ  114 (390)
T ss_dssp             CCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTTT
T ss_pred             CCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCcCCH-----HHhc
Confidence            566777777777777   66666777778888888888777765  3467777788888888877766542     2356


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++..+-.              ..|...   ...+.+|+.|+|++|.|..+++..|.  .+++|+.|++++|
T Consensus       115 ~l~~L~~L~L~~n~l~--------------~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n  175 (390)
T 3o6n_A          115 NVPLLTVLVLERNDLS--------------SLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSN  175 (390)
T ss_dssp             TCTTCCEEECCSSCCC--------------CCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCccC--------------cCCHHH---hcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCC
Confidence            6777777777643221              111110   12355666666666666666665554  5666666666666


Q ss_pred             CCCccc
Q 007072          314 PLEQNS  319 (619)
Q Consensus       314 ~i~~i~  319 (619)
                      .+..++
T Consensus       176 ~l~~~~  181 (390)
T 3o6n_A          176 RLTHVD  181 (390)
T ss_dssp             CCSBCC
T ss_pred             cCCccc
Confidence            665554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=1.8e-12  Score=133.25  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=129.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|.+++|+|..   ++  -...+++|+.|+|++|.|..++.    +.++++|+.|+|++|.+....       .+.
T Consensus        41 ~~L~~L~l~~~~i~~---l~--~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~~~-------~~~  104 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT---IE--GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS-------AIA  104 (308)
T ss_dssp             HTCCEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG-------GGT
T ss_pred             CCcCEEEeeCCCccC---ch--hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCCch-------hhc
Confidence            678999999999988   33  25689999999999999999874    899999999999999988753       267


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++.+.-..              .+     ....+.+|+.|+|++|.|..++.  +.  ++++|+.|++++|
T Consensus       105 ~l~~L~~L~l~~n~l~~--------------~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n  161 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITD--------------VT-----PLAGLSNLQVLYLDLNQITNISP--LA--GLTNLQYLSIGNA  161 (308)
T ss_dssp             TCTTCCEEECTTSCCCC--------------CG-----GGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCCCCC--------------ch-----hhcCCCCCCEEECCCCccCcCcc--cc--CCCCccEEEccCC
Confidence            89999999987544321              11     13358899999999999999987  44  8999999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .|.++.      .+.++++|+.|++..+..-...   .+..+++|+.|
T Consensus       162 ~l~~~~------~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L  200 (308)
T 1h6u_A          162 QVSDLT------PLANLSKLTTLKADDNKISDIS---PLASLPNLIEV  200 (308)
T ss_dssp             CCCCCG------GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEE
T ss_pred             cCCCCh------hhcCCCCCCEEECCCCccCcCh---hhcCCCCCCEE
Confidence            999877      2889999999999988643222   25677777776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.37  E-value=1.2e-12  Score=142.39  Aligned_cols=159  Identities=18%  Similarity=0.168  Sum_probs=122.1

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|.|..   ..+....++++|+.|+|++|+|..++.....+.++++|+.|+|++|.+....+    ...
T Consensus       322 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~----~~~  394 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK----KGD  394 (520)
T ss_dssp             SCCCCCEEECCSSCCCT---TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG----GCS
T ss_pred             hCCcccEEEeECCccCh---hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc----cch
Confidence            45778889999999887   33445578899999999999999887777788999999999999999886221    223


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      +..+++|+.|+++...-.+             ..|.      ....+|+.|||++|+|..+|..++   .+++|+.|+|+
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~-------------~~~~------~l~~~L~~L~Ls~N~l~~ip~~~~---~l~~L~~L~L~  452 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTD-------------TIFR------CLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVA  452 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCG-------------GGGG------SCCTTCCEEECCSSCCCCCCGGGG---GCTTCCEEECC
T ss_pred             hccCccCCEEECcCCCCCc-------------chhh------hhcccCCEEECCCCcccccchhhh---cCCCCCEEECC
Confidence            5678888888887433211             0010      011589999999999999998887   69999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +|.|..++.    ..+.++++|+.|++..|+.
T Consensus       453 ~N~l~~l~~----~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          453 SNQLKSVPD----GIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             SSCCCCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred             CCcCCccCH----HHhccCCcccEEECcCCCC
Confidence            999998882    3578899999999988763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.37  E-value=9.3e-13  Score=144.63  Aligned_cols=141  Identities=22%  Similarity=0.275  Sum_probs=113.2

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|.|..   ++...+.++++|+.|+|++|+|+.++  ..++.+|++|+.|+|++|++....     ...+.
T Consensus        52 ~~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~l~~l~-----~~~f~  121 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLA-----LGAFS  121 (635)
T ss_dssp             TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEEC-----GGGGT
T ss_pred             cCCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCcCCCCC-----HHHhc
Confidence            457899999999998   88888899999999999999999987  467999999999999999988765     34578


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~  312 (619)
                      ++++|+.|+++..+-.+              .|.   .....+.+|+.|+|++|.|..++. ..|.  ++++|++|++++
T Consensus       122 ~L~~L~~L~Ls~N~l~~--------------l~~---~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L~~  182 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLAS--------------LEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSS  182 (635)
T ss_dssp             TCTTCCEEECTTSCCCC--------------STT---CCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCcCCC--------------CCh---hhhhcCcccCeeccccCccccCCCchhhc--cchhhhhhcccC
Confidence            89999999987543221              111   113358899999999999987653 4555  799999999999


Q ss_pred             CCCCccchHHH
Q 007072          313 NPLEQNSVREL  323 (619)
Q Consensus       313 N~i~~i~~~~l  323 (619)
                      |.|..+....+
T Consensus       183 N~l~~~~~~~l  193 (635)
T 4g8a_A          183 NKIQSIYCTDL  193 (635)
T ss_dssp             SCCCEECGGGG
T ss_pred             ccccccccccc
Confidence            99988874443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.37  E-value=5.4e-13  Score=130.79  Aligned_cols=144  Identities=18%  Similarity=0.218  Sum_probs=114.8

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      +.++++++++..   +|..+.   ++|+.|+|++|.|+.++  ...+.++++|+.|+|++|.+....++.          
T Consensus        14 ~~v~c~~~~l~~---iP~~l~---~~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~----------   75 (220)
T 2v9t_B           14 NIVDCRGKGLTE---IPTNLP---ETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDA----------   75 (220)
T ss_dssp             TEEECTTSCCSS---CCSSCC---TTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCCEECTTT----------
T ss_pred             CEEEcCCCCcCc---CCCccC---cCCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCCCcCHHH----------
Confidence            467889999888   665544   78999999999999887  457889999999999999987664221          


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                          ...+.+|+.|+|++|.|..+|...|.  ++++|+.|+|++|.|.
T Consensus        76 ------------------------------------~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           76 ------------------------------------FQGLRSLNSLVLYGNKITELPKSLFE--GLFSLQLLLLNANKIN  117 (220)
T ss_dssp             ------------------------------------TTTCSSCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred             ------------------------------------hhCCcCCCEEECCCCcCCccCHhHcc--CCCCCCEEECCCCCCC
Confidence                                                12477899999999999999999997  8999999999999999


Q ss_pred             ccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          317 QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       317 ~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .+.    ...+.++++|+.|++..|..-+.. ...+..+++|+.|
T Consensus       118 ~~~----~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L  157 (220)
T 2v9t_B          118 CLR----VDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTM  157 (220)
T ss_dssp             CCC----TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEE
T ss_pred             EeC----HHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEE
Confidence            987    456889999999999988642221 2234455666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=1.6e-12  Score=138.64  Aligned_cols=88  Identities=17%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|+|++|.|..   +++..+.++++|+.|+|++|.|.........+.++++|+.|+|++|.+....+.    .+
T Consensus        77 ~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~  149 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQ---LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA----SF  149 (455)
T ss_dssp             TCTTCCEEECTTCTTCE---ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC----GG
T ss_pred             ccccCCEEeCCCCccCc---cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc----cc
Confidence            34678888888888877   555666778888888888888876432223477788888888888887766432    23


Q ss_pred             hhcCCcccccccccc
Q 007072          232 LQGCPKLEIYNSNFT  246 (619)
Q Consensus       232 l~~lP~LeiLn~~~T  246 (619)
                      +..+++|+.|+++..
T Consensus       150 ~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          150 FLNMRRFHVLDLTFN  164 (455)
T ss_dssp             GGGCTTCCEEECTTC
T ss_pred             cCCCCcccEEeCCCC
Confidence            566777777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.36  E-value=9.9e-13  Score=147.75  Aligned_cols=186  Identities=21%  Similarity=0.241  Sum_probs=113.9

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccch------------------------hhHHHHHhcccc
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETV------------------------EIIVQEVTKLKN  208 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~------------------------~~v~~~l~~L~~  208 (619)
                      ...+++|++++|.|..  .++...+..+++|+.|+|++|++..+                        ......+.++++
T Consensus       404 l~~L~~L~L~~N~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~  481 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQ--ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN  481 (680)
T ss_dssp             CTTCCEEECCSSCCEE--ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred             CCCCCEEeCCCCcCcc--ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence            4567777777777754  24434445555555555555555443                        222334555666


Q ss_pred             cceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccc
Q 007072          209 LRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC  288 (619)
Q Consensus       209 Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~  288 (619)
                      |+.|+|++|.+....     ...+.++++|+.|+++...-.+-+.         ...|.........+.+|+.|+|++|.
T Consensus       482 L~~L~Ls~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~~~~~~~~~l~~L~~L~L~~N~  547 (680)
T 1ziw_A          482 LTILDLSNNNIANIN-----DDMLEGLEKLEILDLQHNNLARLWK---------HANPGGPIYFLKGLSHLHILNLESNG  547 (680)
T ss_dssp             CCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCGGGGS---------TTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCCCCcCC-----hhhhccccccCEEeCCCCCccccch---------hhccCCcchhhcCCCCCCEEECCCCC
Confidence            666666666655433     2234556666666655332211000         01111111123457889999999999


Q ss_pred             cccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhh-hcCccccc
Q 007072          289 IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILE-SLPTLCTL  361 (619)
Q Consensus       289 I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~-~lp~L~~L  361 (619)
                      |..+|...|.  ++++|+.|+|++|.|..++    ...+.++++|+.|++..|..-+. ....+. .+++|+.|
T Consensus       548 l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          548 FDEIPVEVFK--DLFELKIIDLGLNNLNTLP----ASVFNNQVSLKSLNLQKNLITSV-EKKVFGPAFRNLTEL  614 (680)
T ss_dssp             CCCCCTTTTT--TCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECTTSCCCBC-CHHHHHHHHTTCSEE
T ss_pred             CCCCCHHHcc--cccCcceeECCCCCCCcCC----HhHhCCCCCCCEEECCCCcCCcc-ChhHhcccccccCEE
Confidence            9999988887  8999999999999998888    45678889999999988854222 223333 56776665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.36  E-value=2.4e-12  Score=132.59  Aligned_cols=181  Identities=17%  Similarity=0.138  Sum_probs=115.1

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|+|..   +++..+.++++|+.|+|++|+|..++...     .++|+.|+|++|.+....     ...+
T Consensus        77 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~-----~~~~  143 (332)
T 2ft3_A           77 LQHLYALVLVNNKISK---IHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVP-----KGVF  143 (332)
T ss_dssp             CTTCCEEECCSSCCCE---ECGGGSTTCTTCCEEECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCC-----SGGG
T ss_pred             CCCCcEEECCCCccCc---cCHhHhhCcCCCCEEECCCCcCCccCccc-----cccCCEEECCCCccCccC-----HhHh
Confidence            4567777777777776   44555667777777777777777665221     167777777777776544     2346


Q ss_pred             hcCCccccccccccccccc-cc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCC
Q 007072          233 QGCPKLEIYNSNFTINFGE-WA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA  300 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~-~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~  300 (619)
                      ..+++|+.|+++...-... ..           +....+.+ ...|.      ....+|+.|+|++|.|..++...|.  
T Consensus       144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l-~~l~~------~~~~~L~~L~l~~n~i~~~~~~~l~--  214 (332)
T 2ft3_A          144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPK------DLPETLNELHLDHNKIQAIELEDLL--  214 (332)
T ss_dssp             SSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC-SSCCS------SSCSSCSCCBCCSSCCCCCCTTSST--
T ss_pred             CCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC-CccCc------cccCCCCEEECCCCcCCccCHHHhc--
Confidence            7788888887765332110 00           00111111 01111      1225788899999999988877776  


Q ss_pred             CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .+++|+.|+|++|.|..+.    ...+.++++|+.|++..+..-...  ..+..+++|+.|
T Consensus       215 ~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L  269 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRMIE----NGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVV  269 (332)
T ss_dssp             TCTTCSCCBCCSSCCCCCC----TTGGGGCTTCCEEECCSSCCCBCC--TTGGGCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCC----hhHhhCCCCCCEEECCCCcCeecC--hhhhcCccCCEE
Confidence            8899999999999988877    445788899999998877532111  114556666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=2.3e-12  Score=132.42  Aligned_cols=153  Identities=20%  Similarity=0.227  Sum_probs=99.7

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|.|..   +|..+.   ++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....   .....+
T Consensus        99 l~~L~~L~Ls~n~l~~---l~~~~~---~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~  167 (330)
T 1xku_A           99 LVKLERLYLSKNQLKE---LPEKMP---KTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSG---IENGAF  167 (330)
T ss_dssp             CTTCCEEECCSSCCSB---CCSSCC---TTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGG---BCTTGG
T ss_pred             CCCCCEEECCCCcCCc---cChhhc---ccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccC---cChhhc
Confidence            3567777777777766   443332   67777777777777665  456777888888888888775421   223346


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..+++|+.|+++...-.              ..|..      ...+|+.|+|++|.|..+++..|.  .+++|+.|+|++
T Consensus       168 ~~l~~L~~L~l~~n~l~--------------~l~~~------~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~  225 (330)
T 1xku_A          168 QGMKKLSYIRIADTNIT--------------TIPQG------LPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSF  225 (330)
T ss_dssp             GGCTTCCEEECCSSCCC--------------SCCSS------CCTTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCS
T ss_pred             cCCCCcCEEECCCCccc--------------cCCcc------ccccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCC
Confidence            67778887777543221              11111      125677777777777777666665  677777777777


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |.|..+.    ...+.++++|+.|++..+.
T Consensus       226 n~l~~~~----~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          226 NSISAVD----NGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             SCCCEEC----TTTGGGSTTCCEEECCSSC
T ss_pred             CcCceeC----hhhccCCCCCCEEECCCCc
Confidence            7777665    3346677777777777664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.35  E-value=3.3e-13  Score=145.44  Aligned_cols=158  Identities=18%  Similarity=0.133  Sum_probs=119.6

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...++.|+|++|.|..   +++..+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....+     ..
T Consensus        54 ~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~  123 (477)
T 2id5_A           54 SFPHLEELELNENIVSA---VEPGAFNNLFNLRTLGLRSNRLKLIP--LGVFTGLSNLTKLDISENKIVILLD-----YM  123 (477)
T ss_dssp             TCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCSCC--TTSSTTCTTCCEEECTTSCCCEECT-----TT
T ss_pred             CCCCCCEEECCCCccCE---eChhhhhCCccCCEEECCCCcCCccC--cccccCCCCCCEEECCCCccccCCh-----hH
Confidence            35789999999999998   66677889999999999999999887  4467899999999999999887653     34


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      +..+++|+.|+++...-.+             -.|    .....+.+|+.|+|++|.+..++...|.  .+++|+.|+|+
T Consensus       124 ~~~l~~L~~L~l~~n~l~~-------------~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~  184 (477)
T 2id5_A          124 FQDLYNLKSLEVGDNDLVY-------------ISH----RAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLR  184 (477)
T ss_dssp             TTTCTTCCEEEECCTTCCE-------------ECT----TSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEE
T ss_pred             ccccccCCEEECCCCccce-------------eCh----hhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCC
Confidence            6789999999887533211             001    1122467888888888888888877776  78888888888


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|.+..+.    ...+.++++|+.|++..+.
T Consensus       185 ~n~i~~~~----~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          185 HLNINAIR----DYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             SCCCCEEC----TTCSCSCTTCCEEEEECCT
T ss_pred             CCcCcEeC----hhhcccCcccceeeCCCCc
Confidence            88887766    3446677777777776543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.34  E-value=1.7e-12  Score=136.51  Aligned_cols=189  Identities=19%  Similarity=0.125  Sum_probs=99.3

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|++++|.|..   ++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+     ..+
T Consensus        92 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~  161 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRY---LPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-----DTF  161 (390)
T ss_dssp             CTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCT-----TTT
T ss_pred             CCCcCEEECCCCCCCc---CCHHHhcCCCCCCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccCh-----hhc
Confidence            3456666666666665   45555556666666666666666554  2334566666666666666554432     224


Q ss_pred             hcCCccccccccccccccccccc----------------------------ccccccC---CCCCCcc------------
Q 007072          233 QGCPKLEIYNSNFTINFGEWALG----------------------------FCGEVYD---KDNPSSL------------  269 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~----------------------------fc~~~~~---~~~p~~l------------  269 (619)
                      ..+++|+.|+++...-.. +.+.                            ..++.+.   ...+..+            
T Consensus       162 ~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  240 (390)
T 3o6n_A          162 QATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD  240 (390)
T ss_dssp             SSCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC
T ss_pred             cCCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc
Confidence            455555555554322111 0000                            0000000   0000000            


Q ss_pred             ccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhH
Q 007072          270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAI  349 (619)
Q Consensus       270 ~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~  349 (619)
                      ......+.+|+.|+|++|.|..+++..|.  .+++|+.|+|++|.|..++     ..+..+++|+.|++..+..-...  
T Consensus       241 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~~n~l~~~~--  311 (390)
T 3o6n_A          241 TAWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNHLLHVE--  311 (390)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECCSSCCCCCG--
T ss_pred             cHHHcCCCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccC-----cccCCCCCCCEEECCCCcceecC--
Confidence            01122456777777777777777666665  6777777777777777655     12356777777777766432221  


Q ss_pred             HHhhhcCccccc
Q 007072          350 EILESLPTLCTL  361 (619)
Q Consensus       350 ~il~~lp~L~~L  361 (619)
                      ..+..+++|+.|
T Consensus       312 ~~~~~l~~L~~L  323 (390)
T 3o6n_A          312 RNQPQFDRLENL  323 (390)
T ss_dssp             GGHHHHTTCSEE
T ss_pred             ccccccCcCCEE
Confidence            113445666555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.34  E-value=7.8e-13  Score=140.97  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=49.1

Q ss_pred             cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhh
Q 007072          275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILES  354 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~  354 (619)
                      .+.+|+.|+|++|.|..+++..|.  ++++|+.|+|++|.|..+.    ...+.++++|+.|++..|..-+. .-..+..
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~  369 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSID----SRMFENLDKLEVLDLSYNHIRAL-GDQSFLG  369 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEEC----GGGGTTCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred             cCCCCCEEECCCCcccccChhHhc--CcccCCEEECCCCccCCcC----hhHhcCcccCCEEECCCCccccc-Chhhccc
Confidence            466777777777777777666665  6777777777777776665    34566677777777766543111 1122344


Q ss_pred             cCccccc
Q 007072          355 LPTLCTL  361 (619)
Q Consensus       355 lp~L~~L  361 (619)
                      +++|+.|
T Consensus       370 l~~L~~L  376 (455)
T 3v47_A          370 LPNLKEL  376 (455)
T ss_dssp             CTTCCEE
T ss_pred             cccccEE
Confidence            5555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.34  E-value=6.1e-13  Score=136.76  Aligned_cols=171  Identities=15%  Similarity=0.144  Sum_probs=116.2

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|.+++|.|..   ++.   ..+++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....+.    .+..
T Consensus        99 ~~L~~L~l~~n~l~~---~~~---~~~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~  166 (317)
T 3o53_A           99 PSIETLHAANNNISR---VSC---SRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAA  166 (317)
T ss_dssp             TTCCEEECCSSCCSE---EEE---CCCSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGG----GGGG
T ss_pred             CCcCEEECCCCccCC---cCc---cccCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHH----HHhh
Confidence            455556666666555   221   24678888888888888765  33567788888888888888775422    2345


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++...-.+                  + .....+.+|+.|+|++|.|..+|+. |.  .+++|+.|+|++|
T Consensus       167 ~l~~L~~L~L~~N~l~~------------------~-~~~~~l~~L~~L~Ls~N~l~~l~~~-~~--~l~~L~~L~L~~N  224 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYD------------------V-KGQVVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNN  224 (317)
T ss_dssp             GTTTCCEEECTTSCCCE------------------E-ECCCCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTS
T ss_pred             ccCcCCEEECCCCcCcc------------------c-ccccccccCCEEECCCCcCCcchhh-hc--ccCcccEEECcCC
Confidence            67888888876433211                  1 1112377899999999999998877 43  7899999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccccC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNG  363 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg  363 (619)
                      .|..++     ..+..+++|+.|+++.|.......-..+..+++|+.|+.
T Consensus       225 ~l~~l~-----~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          225 KLVLIE-----KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             CCCEEC-----TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred             cccchh-----hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence            998766     346788999999998886532223455556666655543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.34  E-value=2e-12  Score=142.81  Aligned_cols=158  Identities=20%  Similarity=0.182  Sum_probs=121.7

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|.|..   ..+....++++|+.|+|++|+|..++.....+.++++|+.|+|++|.+....+    ...
T Consensus       351 ~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~  423 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTD---SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----DRT  423 (562)
T ss_dssp             SCCCCCEEECCSSCCCT---TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS----SCC
T ss_pred             CCCCceEEECCCCcccc---chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC----hhh
Confidence            45778888999988887   44455678899999999999999887666778889999999999998876221    223


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcC-CcccccccCccccccCcccccCCCCCCCCccccc
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL-QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI  310 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L-~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnL  310 (619)
                      +..+++|+.|+++...-.+             ..|       ..+ .+|+.|+|++|+|..+|...|   .+++|+.|+|
T Consensus       424 ~~~l~~L~~L~l~~n~l~~-------------~~~-------~~l~~~L~~L~L~~N~l~~ip~~~~---~l~~L~~L~L  480 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTG-------------SVF-------RCLPPKVKVLDLHNNRIMSIPKDVT---HLQALQELNV  480 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCG-------------GGG-------SSCCTTCSEEECCSSCCCCCCTTTT---SSCCCSEEEC
T ss_pred             hcCcccCCEEECCCCCCCc-------------chh-------hhhcCcCCEEECCCCcCcccChhhc---CCCCCCEEEC
Confidence            5678888888886433211             001       112 589999999999999998888   6999999999


Q ss_pred             CCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          311 RGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       311 s~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      ++|.|..++.    ..+..+++|+.|++..|+.
T Consensus       481 ~~N~l~~l~~----~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          481 ASNQLKSVPD----GVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CSSCCCCCCT----TSTTTCTTCCCEECCSCCB
T ss_pred             CCCCCCCCCH----HHHhcCCCCCEEEecCCCc
Confidence            9999998882    3478899999999988763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.33  E-value=8.9e-13  Score=132.10  Aligned_cols=156  Identities=21%  Similarity=0.171  Sum_probs=87.6

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|.|..   ++...+.++++|+.|+|++|.+..++.  ..+.++++|+.|+|++|.+....    .+..+.
T Consensus        76 ~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~----l~~~~~  146 (276)
T 2z62_A           76 SHLSTLILTGNPIQS---LALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK----LPEYFS  146 (276)
T ss_dssp             TTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCC----CCGGGG
T ss_pred             cCCCEEECCCCccCc---cChhhhcCCccccEEECCCCCccccCc--hhcccCCCCCEEECcCCccceec----Cchhhc
Confidence            456666666666655   444555566666666666666665542  13556666666666666655422    112345


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCccc----ccccCccccccCcccccCCCCCCCCcccc
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT----SLDLSNRCIHNLVNKAFSPAEMPSLSHLN  309 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~----~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln  309 (619)
                      .+++|+.|+++..+-.+              .+.   .....+.+|+    .|+|++|.|..++...|.   ..+|+.|+
T Consensus       147 ~l~~L~~L~Ls~N~l~~--------------~~~---~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~---~~~L~~L~  206 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQS--------------IYC---TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK---EIRLKELA  206 (276)
T ss_dssp             GCTTCCEEECCSSCCCE--------------ECG---GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC---SCCEEEEE
T ss_pred             cCCCCCEEECCCCCCCc--------------CCH---HHhhhhhhccccceeeecCCCcccccCccccC---CCcccEEE
Confidence            56666666655322110              000   0001122333    677777777777776664   34677777


Q ss_pred             cCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +++|.|..++    ...+.++++|+.|++..|.
T Consensus       207 L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          207 LDTNQLKSVP----DGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCSSCCSCCC----TTTTTTCCSCCEEECCSSC
T ss_pred             CCCCceeecC----HhHhcccccccEEEccCCc
Confidence            7777777666    3446677777777777665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.33  E-value=6.8e-13  Score=148.24  Aligned_cols=82  Identities=15%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|++++|.|..   +|...+..+++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus        51 ~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~  120 (597)
T 3oja_B           51 NNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQ  120 (597)
T ss_dssp             CCCSEEEESSCEESE---ECTHHHHHCCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTTT
T ss_pred             CCceEEEeeCCCCCC---cCHHHHccCCCCcEEECCCCCCCCCC--hHHhcCCCCCCEEECCCCcCCCCCH-----HHHc
Confidence            345556666666655   55555556666666666666666554  2355566666666666666554432     2345


Q ss_pred             cCCccccccccc
Q 007072          234 GCPKLEIYNSNF  245 (619)
Q Consensus       234 ~lP~LeiLn~~~  245 (619)
                      .+++|+.|+++.
T Consensus       121 ~l~~L~~L~L~~  132 (597)
T 3oja_B          121 NVPLLTVLVLER  132 (597)
T ss_dssp             TCTTCCEEECCS
T ss_pred             CCCCCCEEEeeC
Confidence            566666665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=2.3e-12  Score=124.08  Aligned_cols=125  Identities=19%  Similarity=0.286  Sum_probs=92.4

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      ..+++++++|..   +|..+   .++|+.|+|++|.|+.++   ..+.++++|+.|+|++|.+....++     .+.   
T Consensus        13 ~~l~~~~~~l~~---ip~~~---~~~l~~L~L~~n~i~~ip---~~~~~l~~L~~L~Ls~N~i~~i~~~-----~f~---   75 (193)
T 2wfh_A           13 TVVRCSNKGLKV---LPKGI---PRDVTELYLDGNQFTLVP---KELSNYKHLTLIDLSNNRISTLSNQ-----SFS---   75 (193)
T ss_dssp             TEEECTTSCCSS---CCSCC---CTTCCEEECCSSCCCSCC---GGGGGCTTCCEEECCSSCCCCCCTT-----TTT---
T ss_pred             CEEEcCCCCCCc---CCCCC---CCCCCEEECCCCcCchhH---HHhhcccCCCEEECCCCcCCEeCHh-----Hcc---
Confidence            468899999988   66544   368999999999999886   5789999999999999998876522     122   


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                            .+.+|+.|+|++|.|..+++..|.  ++++|+.|+|++|.|.
T Consensus        76 --------------------------------------~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           76 --------------------------------------NMTQLLTLILSYNRLRCIPPRTFD--GLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             --------------------------------------TCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred             --------------------------------------CCCCCCEEECCCCccCEeCHHHhC--CCCCCCEEECCCCCCC
Confidence                                                  355677777777777777776665  6777777777777777


Q ss_pred             ccchHHHHHHHhCCCCCccccccCCC
Q 007072          317 QNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       317 ~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .++    ...+.++++|+.|++..|+
T Consensus       116 ~~~----~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          116 VVP----EGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             BCC----TTTTTTCTTCCEEECCSSC
T ss_pred             eeC----hhhhhcCccccEEEeCCCC
Confidence            666    3345666777777766664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.32  E-value=2.1e-12  Score=144.20  Aligned_cols=189  Identities=19%  Similarity=0.125  Sum_probs=109.4

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|+|++|.|..   ++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+     ..+
T Consensus        98 l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~  167 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRY---LPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-----DTF  167 (597)
T ss_dssp             CTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCT-----TTT
T ss_pred             CCCCCEEECCCCcCCC---CCHHHHcCCCCCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCCh-----hhh
Confidence            3566677777777666   55556666677777777777666655  2345666777777777776655442     234


Q ss_pred             hcCCccccccccccccccccccc----------------------------ccccccC---CCCCCcc------------
Q 007072          233 QGCPKLEIYNSNFTINFGEWALG----------------------------FCGEVYD---KDNPSSL------------  269 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~----------------------------fc~~~~~---~~~p~~l------------  269 (619)
                      ..+++|+.|+++...-.+ +.++                            ..++.+.   ...+..+            
T Consensus       168 ~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~  246 (597)
T 3oja_B          168 QATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD  246 (597)
T ss_dssp             TTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC
T ss_pred             hcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC
Confidence            556666666554332111 0000                            0000000   0000000            


Q ss_pred             ccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhH
Q 007072          270 CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAI  349 (619)
Q Consensus       270 ~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~  349 (619)
                      ......+.+|+.|+|++|.|..+++..|.  ++++|+.|+|++|.|..++     ..+..+++|+.|++..|..-...  
T Consensus       247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~N~l~~i~--  317 (597)
T 3oja_B          247 TAWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNHLLHVE--  317 (597)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCSSCCCCCG--
T ss_pred             ChhhccCCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCCCCCCccC--
Confidence            01123567888888898888888777776  7888888888888887765     23456788888888777543221  


Q ss_pred             HHhhhcCccccc
Q 007072          350 EILESLPTLCTL  361 (619)
Q Consensus       350 ~il~~lp~L~~L  361 (619)
                      ..+..+++|+.|
T Consensus       318 ~~~~~l~~L~~L  329 (597)
T 3oja_B          318 RNQPQFDRLENL  329 (597)
T ss_dssp             GGHHHHTTCSEE
T ss_pred             cccccCCCCCEE
Confidence            123456666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.32  E-value=1.5e-12  Score=131.18  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=124.8

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|+|.+   ++  -...+++|+.|+|++|+|..++.    +.++++|+.|+|++|.+.....       .
T Consensus        40 l~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~l~~l~~-------~  103 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQS---LA--GMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNRLKNLNG-------I  103 (263)
T ss_dssp             HTTCSEEECTTSCCCC---CT--TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSCCSCCTT-------C
T ss_pred             cCcCcEEECcCCCccc---ch--HHhhCCCCCEEECCCCccCCChh----hccCCCCCEEECCCCccCCcCc-------c
Confidence            3678899999999988   44  35678999999999999999874    8999999999999999887642       1


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      .. ++|+.|+++..+-.+                  + .....+.+|+.|+|++|+|..++  .+.  .+++|+.|++++
T Consensus       104 ~~-~~L~~L~L~~N~l~~------------------~-~~l~~l~~L~~L~Ls~N~i~~~~--~l~--~l~~L~~L~L~~  159 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNELRD------------------T-DSLIHLKNLEILSIRNNKLKSIV--MLG--FLSKLEVLDLHG  159 (263)
T ss_dssp             CC-SSCCEEECCSSCCSB------------------S-GGGTTCTTCCEEECTTSCCCBCG--GGG--GCTTCCEEECTT
T ss_pred             cc-CcccEEEccCCccCC------------------C-hhhcCcccccEEECCCCcCCCCh--HHc--cCCCCCEEECCC
Confidence            12 888888887543221                  1 11335789999999999999986  344  799999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCCCCCc--hhHHHhhhcCccccccCccch
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGE--SAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~--~~~~il~~lp~L~~LNg~~~s  367 (619)
                      |.|.++.      .+.++++|+.|++..+.....  .....+...+.+..++|..+.
T Consensus       160 N~i~~~~------~l~~l~~L~~L~l~~N~~~~~~~~~~~~l~~~~~l~~l~~~~i~  210 (263)
T 1xeu_A          160 NEITNTG------GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS  210 (263)
T ss_dssp             SCCCBCT------TSTTCCCCCEEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCC
T ss_pred             CcCcchH------HhccCCCCCEEeCCCCcccCCccccccceEECCeeecCCCCCcC
Confidence            9998874      578899999999876642111  111112234566677776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=133.93  Aligned_cols=77  Identities=22%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             cCCcccccccCccccccC-cccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhh
Q 007072          275 PLQSVTSLDLSNRCIHNL-VNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILE  353 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~L-p~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~  353 (619)
                      .+.+|+.||||+|.|..+ |...+.+..+++|++|+|++|.|..++.       .-+++|+.|++..|..-+.   .++.
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-------~~~~~L~~L~Ls~N~l~~~---~~~~  291 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-------GLPAKLRVLDLSSNRLNRA---PQPD  291 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-------CCCSCCSCEECCSCCCCSC---CCTT
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-------hhcCCCCEEECCCCcCCCC---chhh
Confidence            467899999999999987 5555543345899999999999988762       1148999999988864322   2245


Q ss_pred             hcCccccc
Q 007072          354 SLPTLCTL  361 (619)
Q Consensus       354 ~lp~L~~L  361 (619)
                      .+|+|+.|
T Consensus       292 ~l~~L~~L  299 (310)
T 4glp_A          292 ELPEVDNL  299 (310)
T ss_dssp             SCCCCSCE
T ss_pred             hCCCccEE
Confidence            56666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.30  E-value=1.1e-11  Score=127.44  Aligned_cols=166  Identities=16%  Similarity=0.213  Sum_probs=91.5

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...++.|++++|.+..   ++.  ...+++|+.|+|++|.+..++.    +.++++|+.|++++|.+....+       
T Consensus       153 ~l~~L~~L~l~~~~~~~---~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~-------  216 (347)
T 4fmz_A          153 NMTGLNYLTVTESKVKD---VTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP-------  216 (347)
T ss_dssp             TCTTCCEEECCSSCCCC---CGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG-------
T ss_pred             hCCCCcEEEecCCCcCC---chh--hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch-------
Confidence            34678888888888877   222  5678888888888888888763    7778888888888887766541       


Q ss_pred             hhcCCcccccccccccccccccccccccccC----CCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcc
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYD----KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH  307 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~----~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~  307 (619)
                      +..+++|+.|+++...-...-.+..+...-.    .+.-..+ .....+.+|+.|+|++|.|..++.  |.  .+++|+.
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~  291 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISV--LN--NLSQLNS  291 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSE
T ss_pred             hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChh--hc--CCCCCCE
Confidence            5667777777765433211000000000000    0000000 012234455555555555555431  22  4555555


Q ss_pred             cccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |++++|.+....    ...+.++++|+.|++..+.
T Consensus       292 L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          292 LFLNNNQLGNED----MEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             EECCSSCCCGGG----HHHHHTCTTCSEEECCSSS
T ss_pred             EECcCCcCCCcC----hhHhhccccCCEEEccCCc
Confidence            555555555444    3445555555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.30  E-value=3.8e-12  Score=125.33  Aligned_cols=146  Identities=16%  Similarity=0.113  Sum_probs=111.5

Q ss_pred             CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccc
Q 007072          181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV  260 (619)
Q Consensus       181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~  260 (619)
                      ...+.++.++|.+..+|..     -.++|+.|+|++|.+....+     ..+..+++|+.|+++..+-.           
T Consensus        19 Cs~~~v~c~~~~l~~ip~~-----~~~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~N~l~-----------   77 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAG-----IPTNAQILYLHDNQITKLEP-----GVFDSLINLKELYLGSNQLG-----------   77 (229)
T ss_dssp             EETTEEECTTSCCSSCCSC-----CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-----------
T ss_pred             EeCCEeEccCCCcCccCCC-----CCCCCCEEEcCCCccCccCH-----HHhhCccCCcEEECCCCCCC-----------
Confidence            4567899999999999842     23899999999999998753     34678999999998753321           


Q ss_pred             cCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072          261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI  340 (619)
Q Consensus       261 ~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~  340 (619)
                         ..|.   .....+.+|+.|+|++|.|..++...|.  .+++|+.|+|++|.|..++     ..+.++++|+.|++..
T Consensus        78 ---~i~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L~Ls~N~l~~lp-----~~~~~l~~L~~L~L~~  144 (229)
T 3e6j_A           78 ---ALPV---GVFDSLTQLTVLDLGTNQLTVLPSAVFD--RLVHLKELFMCCNKLTELP-----RGIERLTHLTHLALDQ  144 (229)
T ss_dssp             ---CCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCSCC-----TTGGGCTTCSEEECCS
T ss_pred             ---CcCh---hhcccCCCcCEEECCCCcCCccChhHhC--cchhhCeEeccCCcccccC-----cccccCCCCCEEECCC
Confidence               1111   1123588999999999999999999887  8999999999999999876     3468999999999998


Q ss_pred             CCCCCchhHHHhhhcCccccc
Q 007072          341 PGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       341 p~~l~~~~~~il~~lp~L~~L  361 (619)
                      |..-.. ....+..+++|+.|
T Consensus       145 N~l~~~-~~~~~~~l~~L~~L  164 (229)
T 3e6j_A          145 NQLKSI-PHGAFDRLSSLTHA  164 (229)
T ss_dssp             SCCCCC-CTTTTTTCTTCCEE
T ss_pred             CcCCcc-CHHHHhCCCCCCEE
Confidence            854222 12445566666655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.30  E-value=1.8e-12  Score=141.46  Aligned_cols=156  Identities=19%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|+|..   ++...+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....     ...+.
T Consensus        26 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~   95 (549)
T 2z81_A           26 AAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSLS-----SSWFG   95 (549)
T ss_dssp             TTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCSCC-----HHHHT
T ss_pred             CCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccC--hhhccccccCCEEECCCCccCccC-----HHHhc
Confidence            457778888888777   55555677788888888888777765  346777888888888888776554     33456


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccc-cccCcccccCCCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~-I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      .+++|+.|+++...-.+            ...|    .....+.+|+.|+|++|. +..+|...|.  ++++|++|++++
T Consensus        96 ~l~~L~~L~Ls~n~l~~------------~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~  157 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQT------------LGVT----SLFPNLTNLQTLRIGNVETFSEIRRIDFA--GLTSLNELEIKA  157 (549)
T ss_dssp             TCTTCCEEECTTCCCSS------------SCSS----CSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEE
T ss_pred             cCCCCcEEECCCCcccc------------cchh----hhhhccCCccEEECCCCccccccCHhhhh--cccccCeeeccC
Confidence            77788877776433211            0001    012235556666666665 4555555554  566666666666


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      |.+....    +..+.++++|+.|++..+
T Consensus       158 n~l~~~~----~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          158 LSLRNYQ----SQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             TTCCEEC----TTTTTTCSEEEEEEEECS
T ss_pred             CcccccC----hhhhhccccCceEecccC
Confidence            6655433    233444555555554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.29  E-value=2.2e-12  Score=117.63  Aligned_cols=132  Identities=23%  Similarity=0.297  Sum_probs=97.9

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|++++|+|.+. .+| ..+..+++|+.|+|++|.|..+    ..+.++++|+.|+|++|.+....+.     .+
T Consensus        16 ~~~l~~L~l~~n~l~~~-~~~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~-----~~   84 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEG-KLE-GLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEV-----LA   84 (149)
T ss_dssp             GGGCSEEECTTCBCBTT-BCC-SCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHH-----HH
T ss_pred             CccCeEEEccCCcCChh-HHH-HHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHH-----Hh
Confidence            36789999999999831 133 4567899999999999999987    5788999999999999998763211     11


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs  311 (619)
                      .                                         .+.+|+.|+|++|.|..++. ..+.  ++++|++|+++
T Consensus        85 ~-----------------------------------------~l~~L~~L~ls~N~i~~~~~~~~~~--~l~~L~~L~l~  121 (149)
T 2je0_A           85 E-----------------------------------------KCPNLTHLNLSGNKIKDLSTIEPLK--KLENLKSLDLF  121 (149)
T ss_dssp             H-----------------------------------------HCTTCCEEECTTSCCCSHHHHGGGG--GCTTCCEEECT
T ss_pred             h-----------------------------------------hCCCCCEEECCCCcCCChHHHHHHh--hCCCCCEEeCc
Confidence            1                                         25677888888888888763 4554  78999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCcccccc
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVD  339 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld  339 (619)
                      +|+|..++. -....+.++++|+.|++.
T Consensus       122 ~N~l~~~~~-~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          122 NCEVTNLND-YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred             CCcccchHH-HHHHHHHHCCCcccccCC
Confidence            999887761 001457777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.29  E-value=1.4e-12  Score=133.40  Aligned_cols=179  Identities=24%  Similarity=0.286  Sum_probs=104.6

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCC-cccccccchhhhHH
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNN-PVLKKCDHCMEDAI  231 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~N-pi~~~~~~~~~~~i  231 (619)
                      ...++.|++++|.|..  .........+|+|+.|+|++|.+...  ....+.++++|+.|+|++| .+...    ....+
T Consensus        92 ~~~L~~L~L~~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~~~l~~~----~l~~~  163 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEV--STLHGILSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEF----ALQTL  163 (336)
T ss_dssp             CBCCCEEECTTCEECH--HHHHHHHTTBCCCSEEECTTCBCCHH--HHHHHTTCTTCSEEECTTCBSCCHH----HHHHH
T ss_pred             CCCCCEEEccCCCcCH--HHHHHHHhhCCCCCEEeCcCcccCHH--HHHHHhcCCCCCEEECCCCCCCCHH----HHHHH
Confidence            3667788888887765  11334456778888888888877643  2456777888888888888 34422    13455


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCC-cccccccCcccc----ccCcccccCCCCCCCCc
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ-SVTSLDLSNRCI----HNLVNKAFSPAEMPSLS  306 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~-~L~~LdLS~N~I----~~Lp~~~f~~~~L~~L~  306 (619)
                      +..+|+|+.|+++.+.+.+..+               +......+. +|+.|+|++|.+    ..++. .+.  .+++|+
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~---------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~--~~~~L~  225 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKH---------------VQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVR--RCPNLV  225 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHH---------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHH--HCTTCS
T ss_pred             HhcCCCCCEEcCCCCCCcChHH---------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHh--hCCCCC
Confidence            6778888888776542211100               000111355 677777777743    23333 222  567777


Q ss_pred             ccccCCCC-CCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          307 HLNIRGNP-LEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       307 ~LnLs~N~-i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .|++++|. +.+..    ...+.++++|+.|++..+..+.......+..+|+|+.|
T Consensus       226 ~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          226 HLDLSDSVMLKNDC----FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             EEECTTCTTCCGGG----GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EEeCCCCCcCCHHH----HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            77777776 44333    23456667777777766653333333345556666665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.29  E-value=2.2e-12  Score=132.64  Aligned_cols=155  Identities=14%  Similarity=0.141  Sum_probs=103.8

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|.|..   ..+..+.++++|+.|+|++|.|....  ...+.++++|+.|+|++|.+....+.     .+
T Consensus       100 l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~-----~l  169 (313)
T 1ogq_A          100 LTQLHYLYITHTNVSG---AIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPD-----SY  169 (313)
T ss_dssp             CTTCSEEEEEEECCEE---ECCGGGGGCTTCCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCG-----GG
T ss_pred             CCCCCEEECcCCeeCC---cCCHHHhCCCCCCEEeCCCCccCCcC--ChHHhcCCCCCeEECcCCcccCcCCH-----HH
Confidence            4678899999999886   34455678899999999999888421  25678899999999999998754322     24


Q ss_pred             hcCC-cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          233 QGCP-KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP-~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      ..++ +|+.|+++.....+.             .|..+.    .+. |+.|+|++|.+...++..|.  .+++|+.|+|+
T Consensus       170 ~~l~~~L~~L~L~~N~l~~~-------------~~~~~~----~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~  229 (313)
T 1ogq_A          170 GSFSKLFTSMTISRNRLTGK-------------IPPTFA----NLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLA  229 (313)
T ss_dssp             GCCCTTCCEEECCSSEEEEE-------------CCGGGG----GCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECC
T ss_pred             hhhhhcCcEEECcCCeeecc-------------CChHHh----CCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECC
Confidence            5666 888888865433211             111111    233 77777777777766666665  67777777777


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|.+....     ..+..+++|+.|++..+.
T Consensus       230 ~N~l~~~~-----~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          230 KNSLAFDL-----GKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             SSEECCBG-----GGCCCCTTCCEEECCSSC
T ss_pred             CCceeeec-----CcccccCCCCEEECcCCc
Confidence            77765333     125566777777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.29  E-value=2.8e-12  Score=133.08  Aligned_cols=158  Identities=22%  Similarity=0.283  Sum_probs=100.3

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh---
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED---  229 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~---  229 (619)
                      ...+++|+|++|+|..   +|. ...++++|+.|+|++|.|..++   ..+.++++|+.|+|++|.+....+..+..   
T Consensus       103 l~~L~~L~L~~n~l~~---lp~-~~~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~  175 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLME---LPD-TMQQFAGLETLTLARNPLRALP---ASIASLNRLRELSIRACPELTELPEPLASTDA  175 (328)
T ss_dssp             GTTCSEEEEESSCCCC---CCS-CGGGGTTCSEEEEESCCCCCCC---GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred             CCCCCEEECCCCCccc---hhH-HHhccCCCCEEECCCCccccCc---HHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence            3678999999999986   553 3478999999999999999776   46899999999999998776654332211   


Q ss_pred             -HHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCccc
Q 007072          230 -AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHL  308 (619)
Q Consensus       230 -~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~L  308 (619)
                       ..+..+++|+.|+++..+-.              ..|..    ...+.+|+.|+|++|.+..+|.. |.  .+++|+.|
T Consensus       176 ~~~~~~l~~L~~L~L~~n~l~--------------~lp~~----l~~l~~L~~L~L~~N~l~~l~~~-l~--~l~~L~~L  234 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTGIR--------------SLPAS----IANLQNLKSLKIRNSPLSALGPA-IH--HLPKLEEL  234 (328)
T ss_dssp             CCCEEESTTCCEEEEEEECCC--------------CCCGG----GGGCTTCCEEEEESSCCCCCCGG-GG--GCTTCCEE
T ss_pred             hhhhccCCCCCEEECcCCCcC--------------cchHh----hcCCCCCCEEEccCCCCCcCchh-hc--cCCCCCEE
Confidence             11345899998888653321              11211    11345556666666666655553 22  45556666


Q ss_pred             ccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       309 nLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|++|.+....    +..+.++++|+.|++..+.
T Consensus       235 ~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          235 DLRGCTALRNY----PPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             ECTTCTTCCBC----CCCTTCCCCCCEEECTTCT
T ss_pred             ECcCCcchhhh----HHHhcCCCCCCEEECCCCC
Confidence            66655543322    2334555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.29  E-value=2.9e-12  Score=129.08  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=124.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+..+.+++++|.+   ++  ....+++|+.|+|++|.|.+++    .+.++++|+.|+|++|.+....+       +.
T Consensus        19 ~~l~~l~l~~~~i~~---~~--~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~-------l~   82 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTD---LV--SQKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP-------LK   82 (263)
T ss_dssp             HHHHHHHHTCSCTTS---EE--CHHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-------GT
T ss_pred             HHHHHHHhcCCCccc---cc--chhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCChh-------hc
Confidence            345567789999888   33  3468999999999999999986    58899999999999999987652       78


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++...-.+              .|    . ... .+|+.|+|++|.|..++.  +.  ++++|+.|++++|
T Consensus        83 ~l~~L~~L~L~~N~l~~--------------l~----~-~~~-~~L~~L~L~~N~l~~~~~--l~--~l~~L~~L~Ls~N  138 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKN--------------LN----G-IPS-ACLSRLFLDNNELRDTDS--LI--HLKNLEILSIRNN  138 (263)
T ss_dssp             TCSSCCEEECCSSCCSC--------------CT----T-CCC-SSCCEEECCSSCCSBSGG--GT--TCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCCccCC--------------cC----c-ccc-CcccEEEccCCccCCChh--hc--CcccccEEECCCC
Confidence            89999999987543221              11    1 112 789999999999999863  54  8999999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .|.+++      .+.++++|+.|++..|..-..   ..+..+++|+.|
T Consensus       139 ~i~~~~------~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L  177 (263)
T 1xeu_A          139 KLKSIV------MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWI  177 (263)
T ss_dssp             CCCBCG------GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEE
T ss_pred             cCCCCh------HHccCCCCCEEECCCCcCcch---HHhccCCCCCEE
Confidence            999876      588999999999998864322   345556666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.29  E-value=6.3e-12  Score=142.02  Aligned_cols=160  Identities=24%  Similarity=0.265  Sum_probs=128.6

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|.+++|+|..   ++  -...+++|+.|+|++|.|..++.    +.+|++|+.|+|++|.+....       .+.
T Consensus        43 ~~L~~L~l~~n~i~~---l~--~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~-------~l~  106 (605)
T 1m9s_A           43 NSIDQIIANNSDIKS---VQ--GIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDLS-------SLK  106 (605)
T ss_dssp             TTCCCCBCTTCCCCC---CT--TGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCT-------TST
T ss_pred             CCCCEEECcCCCCCC---Ch--HHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCCCCCh-------hhc
Confidence            568889999999988   33  25789999999999999999874    899999999999999998754       267


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .|++|+.|+++......               +    .....+.+|+.|+|++|.|..++  .|.  .+++|+.|+|++|
T Consensus       107 ~l~~L~~L~Ls~N~l~~---------------l----~~l~~l~~L~~L~Ls~N~l~~l~--~l~--~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISD---------------I----NGLVHLPQLESLYLGNNKITDIT--VLS--RLTKLDTLSLEDN  163 (605)
T ss_dssp             TCTTCCEEECTTSCCCC---------------C----GGGGGCTTCSEEECCSSCCCCCG--GGG--SCTTCSEEECCSS
T ss_pred             cCCCCCEEEecCCCCCC---------------C----ccccCCCccCEEECCCCccCCch--hhc--ccCCCCEEECcCC
Confidence            89999999987543221               1    11235889999999999999983  344  8999999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .|..+.    +  +.++++|+.|++..|..-..   ..+..|++|+.|
T Consensus       164 ~l~~~~----~--l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L  202 (605)
T 1m9s_A          164 QISDIV----P--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVL  202 (605)
T ss_dssp             CCCCCG----G--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEE
T ss_pred             cCCCch----h--hccCCCCCEEECcCCCCCCC---hHHccCCCCCEE
Confidence            999876    2  89999999999998864322   335667777766

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.29  E-value=2.6e-12  Score=142.13  Aligned_cols=171  Identities=22%  Similarity=0.249  Sum_probs=102.3

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .++.|++++|.|..   ++...+..+++|+.|+|++|.|..++   ..+.++++|+.|+|++|.+....+     ..+..
T Consensus       255 ~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~lp---~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~  323 (606)
T 3t6q_A          255 SVESINLQKHYFFN---ISSNTFHCFSGLQELDLTATHLSELP---SGLVGLSTLKKLVLSANKFENLCQ-----ISASN  323 (606)
T ss_dssp             EEEEEECTTCCCSS---CCTTTTTTCTTCSEEECTTSCCSCCC---SSCCSCTTCCEEECTTCCCSBGGG-----GCGGG
T ss_pred             ceeEEEeecCccCc---cCHHHhccccCCCEEeccCCccCCCC---hhhcccccCCEEECccCCcCcCch-----hhhhc
Confidence            78899999999988   77777889999999999999999876   357889999999999999886542     34678


Q ss_pred             CCccccccccccccccccc---ccccccccC----CCCCCcc---ccCCCcCCcccccccCccccccCcccccCCCCCCC
Q 007072          235 CPKLEIYNSNFTINFGEWA---LGFCGEVYD----KDNPSSL---CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS  304 (619)
Q Consensus       235 lP~LeiLn~~~T~n~~~~~---l~fc~~~~~----~~~p~~l---~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~  304 (619)
                      +|+|+.|+++.....+...   +..+...-.    .+.-...   ......+.+|+.|+|++|.+..+++..|.  .+++
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~  401 (606)
T 3t6q_A          324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQ  401 (606)
T ss_dssp             CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTT
T ss_pred             cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc--CCcc
Confidence            8999988887543322111   000000000    0000000   00122344555555555555555554444  4555


Q ss_pred             CcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       305 L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      |+.|++++|.+.....   ...+.++++|+.|++..+
T Consensus       402 L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             CSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTC
T ss_pred             CCeEECCCCcCCCccc---chhhhCcccCCEEECCCC
Confidence            5555555555543320   112445555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.28  E-value=3.4e-12  Score=131.08  Aligned_cols=154  Identities=16%  Similarity=0.162  Sum_probs=119.5

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|.|..   ++...+.++++|+.|+|++|.+...+.....+.++++|+.|+|++|.+.....        .
T Consensus       121 ~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--------~  189 (330)
T 1xku_A          121 KTLQELRVHENEITK---VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--------G  189 (330)
T ss_dssp             TTCCEEECCSSCCCB---BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--------S
T ss_pred             ccccEEECCCCcccc---cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc--------c
Confidence            579999999999998   77777889999999999999998755556788999999999999999887642        1


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++...-.+             -.|.    ....+.+|+.|+|++|.|..++...|.  .+++|+.|+|++|
T Consensus       190 ~~~~L~~L~l~~n~l~~-------------~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N  250 (330)
T 1xku_A          190 LPPSLTELHLDGNKITK-------------VDAA----SLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNN  250 (330)
T ss_dssp             CCTTCSEEECTTSCCCE-------------ECTG----GGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSS
T ss_pred             ccccCCEEECCCCcCCc-------------cCHH----HhcCCCCCCEEECCCCcCceeChhhcc--CCCCCCEEECCCC
Confidence            23788888876432211             0011    122477888999999999888877776  7889999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .|..++     ..+..+++|+.|++..|.
T Consensus       251 ~l~~lp-----~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          251 KLVKVP-----GGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CCSSCC-----TTTTTCSSCCEEECCSSC
T ss_pred             cCccCC-----hhhccCCCcCEEECCCCc
Confidence            888766     346788888888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.28  E-value=1.4e-11  Score=126.70  Aligned_cols=161  Identities=20%  Similarity=0.300  Sum_probs=90.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|.|.+   ++.  +..+++|+.|+|++|.|..++    .+.++++|+.|+|++|.+....+       +.
T Consensus        66 ~~L~~L~l~~n~i~~---~~~--~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~l~~n~i~~~~~-------~~  129 (347)
T 4fmz_A           66 TNLEYLNLNGNQITD---ISP--LSNLVKLTNLYIGTNKITDIS----ALQNLTNLRELYLNEDNISDISP-------LA  129 (347)
T ss_dssp             TTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECTTSCCCCCGG-------GT
T ss_pred             CCccEEEccCCcccc---chh--hhcCCcCCEEEccCCcccCch----HHcCCCcCCEEECcCCcccCchh-------hc
Confidence            456666666666665   232  556666666666666666653    36666666666666666655431       45


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++.....+..              .    ....+.+|+.|++++|.+..++.  +.  .+++|+.|++++|
T Consensus       130 ~l~~L~~L~l~~n~~~~~~--------------~----~~~~l~~L~~L~l~~~~~~~~~~--~~--~l~~L~~L~l~~n  187 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDL--------------S----PLSNMTGLNYLTVTESKVKDVTP--IA--NLTDLYSLSLNYN  187 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCC--------------G----GGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECTTS
T ss_pred             cCCceeEEECCCCCCcccc--------------c----chhhCCCCcEEEecCCCcCCchh--hc--cCCCCCEEEccCC
Confidence            6666666666543222110              0    12235566666677666666654  33  5666677777776


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .+.+++      .+..+++|+.|.+..+..-....   +..+++|+.|
T Consensus       188 ~l~~~~------~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L  226 (347)
T 4fmz_A          188 QIEDIS------PLASLTSLHYFTAYVNQITDITP---VANMTRLNSL  226 (347)
T ss_dssp             CCCCCG------GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEE
T ss_pred             cccccc------cccCCCccceeecccCCCCCCch---hhcCCcCCEE
Confidence            666655      15566666666666554322111   4445555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.28  E-value=1.5e-12  Score=133.89  Aligned_cols=148  Identities=22%  Similarity=0.160  Sum_probs=102.4

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|+|++|+|..   ++...+..+++|+.|+|++|.|.....    +.++++|+.|+|++|.+....         
T Consensus        33 ~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~l~---------   96 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL---------   96 (317)
T ss_dssp             GGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEEEEEE---------
T ss_pred             CCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCcccccc---------
Confidence            3578899999999988   666677899999999999999987763    889999999999999987654         


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                       .+++|+.|+++...-.+                  +  ....+.+|+.|+|++|.|..+++..|.  ++++|+.|++++
T Consensus        97 -~~~~L~~L~l~~n~l~~------------------~--~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~  153 (317)
T 3o53_A           97 -VGPSIETLHAANNNISR------------------V--SCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKL  153 (317)
T ss_dssp             -ECTTCCEEECCSSCCSE------------------E--EECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTT
T ss_pred             -CCCCcCEEECCCCccCC------------------c--CccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCC
Confidence             34788888776433211                  0  011245667777777777766665554  667777777777


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |.|..+....   ....+++|+.|+++.+.
T Consensus       154 N~l~~~~~~~---~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          154 NEIDTVNFAE---LAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             SCCCEEEGGG---GGGGTTTCCEEECTTSC
T ss_pred             CCCCcccHHH---HhhccCcCCEEECCCCc
Confidence            7766655211   12356666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=2e-12  Score=141.65  Aligned_cols=177  Identities=22%  Similarity=0.149  Sum_probs=112.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|+|..   +++..+..+++|+.|+|++|.|.....    +.++++|+.|+|++|.+....          
T Consensus        34 ~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l~----------   96 (487)
T 3oja_A           34 WNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELL----------   96 (487)
T ss_dssp             GGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEEEE----------
T ss_pred             CCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCCCC----------
Confidence            478999999999998   666777899999999999999987663    889999999999999988654          


Q ss_pred             cCCccccccccccccccccc--------ccccccccCCCCCCcc-ccCCCcCCcccccccCccccccCcccccCCCCCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWA--------LGFCGEVYDKDNPSSL-CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPS  304 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~--------l~fc~~~~~~~~p~~l-~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~  304 (619)
                      .+|+|+.|+++...-.+...        |...++.+     ..+ ......+.+|+.|+|++|.|..+++..|. ..+++
T Consensus        97 ~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~  170 (487)
T 3oja_A           97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKI-----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDT  170 (487)
T ss_dssp             ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCC-----CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTT
T ss_pred             CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCC-----CCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCc
Confidence            23777777766433221000        00111111     111 01122456777777777777765553331 14677


Q ss_pred             CcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       305 L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      |+.|+|++|.|..++      .+..+++|+.|+++.|..-+...  .+..+++|+.|
T Consensus       171 L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L  219 (487)
T 3oja_A          171 LEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWI  219 (487)
T ss_dssp             CCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEE
T ss_pred             ccEEecCCCcccccc------ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEE
Confidence            777777777776654      23357777777777665322211  14455666555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.28  E-value=9.5e-12  Score=135.78  Aligned_cols=181  Identities=18%  Similarity=0.157  Sum_probs=92.1

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhH-HHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEII-VQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v-~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..++.|++++|.|..   +|..++..+++|+.|+|++|+|...-.. ...+..+++|+.|+|++|.+....+   ....+
T Consensus       310 ~~L~~L~l~~n~l~~---ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~  383 (549)
T 2z81_A          310 EKVKRITVENSKVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK---TGEIL  383 (549)
T ss_dssp             TTCCEEEEESSCCCC---CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH---HHHHG
T ss_pred             ccceEEEeccCcccc---CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc---chhhh
Confidence            456666666666665   5555555666666666666666543211 1124556666666666666654321   01235


Q ss_pred             hcCCccccccccccccccccc--c---------cccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWA--L---------GFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE  301 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~--l---------~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~  301 (619)
                      ..+++|+.|+++..+-.. +.  +         ...++.+ ...|.      ....+|+.|||++|.|..++      ..
T Consensus       384 ~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l-~~l~~------~~~~~L~~L~Ls~N~l~~~~------~~  449 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI-RVVKT------CIPQTLEVLDVSNNNLDSFS------LF  449 (549)
T ss_dssp             GGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCC-SCCCT------TSCTTCSEEECCSSCCSCCC------CC
T ss_pred             hcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCc-ccccc------hhcCCceEEECCCCChhhhc------cc
Confidence            556666666654322110 00  0         0000000 00010      01235666666666665543      16


Q ss_pred             CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +++|+.|+|++|.|..++.      ...+++|+.|++..|..-+ ..-..+..+++|+.|
T Consensus       450 l~~L~~L~Ls~N~l~~ip~------~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L  502 (549)
T 2z81_A          450 LPRLQELYISRNKLKTLPD------ASLFPVLLVMKISRNQLKS-VPDGIFDRLTSLQKI  502 (549)
T ss_dssp             CTTCCEEECCSSCCSSCCC------GGGCTTCCEEECCSSCCCC-CCTTGGGGCTTCCEE
T ss_pred             CChhcEEECCCCccCcCCC------cccCccCCEEecCCCccCC-cCHHHHhcCcccCEE
Confidence            7777888888887776661      3457777777777664321 112234445555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.28  E-value=3.6e-12  Score=141.03  Aligned_cols=175  Identities=16%  Similarity=0.144  Sum_probs=99.8

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|.|.....+ ......+++|+.|+|++|.+..++   ..+.++++|+.|+|++|.+....+.    ..
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~----~~  419 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCC-SYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEF----SA  419 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEEC-CHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTT----TT
T ss_pred             cCCCCCEEECcCCccCCCcch-hhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccCh----hh
Confidence            446677777777776651101 223345666666666666666554   4555666666666666666554320    12


Q ss_pred             hhcCCccccccccccccccccc-----------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWA-----------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPA  300 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~-----------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~  300 (619)
                      +..+++|+.|+++.....+...           |...++.+...   .+......+.+|+.|+|++|.|..+++..|.  
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--  494 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQLEQISWGVFD--  494 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTT--
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCcCCccChhhhc--
Confidence            4455666666555433221100           00000000000   0011223567888888888888877777666  


Q ss_pred             CCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          301 EMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       301 ~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      ++++|+.|+|++|.+..+.    +..+.++++|+.|++..|..
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLD----SSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEE----GGGTTTCTTCCEEECTTSCC
T ss_pred             ccccCCEEECCCCcCCCcC----HHHccCCCcCCEEECCCCcC
Confidence            7888888888888887765    45677788888888877753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.27  E-value=6e-12  Score=129.60  Aligned_cols=169  Identities=18%  Similarity=0.202  Sum_probs=115.3

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|.|..   +|..+.   ++|+.|+|++|.|..++  ...+.++++|+.|+|++|++....   .....
T Consensus       100 ~l~~L~~L~L~~n~l~~---l~~~~~---~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~  168 (332)
T 2ft3_A          100 PLRKLQKLYISKNHLVE---IPPNLP---SSLVELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSG---FEPGA  168 (332)
T ss_dssp             TCTTCCEEECCSSCCCS---CCSSCC---TTCCEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGG---SCTTS
T ss_pred             CcCCCCEEECCCCcCCc---cCcccc---ccCCEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCC---CCccc
Confidence            34678889999998887   555444   78888888888888776  345788888888888888886421   11222


Q ss_pred             hhcCCcccccccccccccc---cc-----cccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCC
Q 007072          232 LQGCPKLEIYNSNFTINFG---EW-----ALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP  303 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~---~~-----~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~  303 (619)
                      +..+ +|+.|+++..+-.+   .+     .|...++.+..-.|    .....+.+|+.|+|++|.|..+++..|.  .++
T Consensus       169 ~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~  241 (332)
T 2ft3_A          169 FDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL----EDLLRYSKLYRLGLGHNQIRMIENGSLS--FLP  241 (332)
T ss_dssp             SCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT----TSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCT
T ss_pred             ccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCcCChhHhh--CCC
Confidence            3444 66666664432211   00     01111111111111    1233578999999999999999887776  899


Q ss_pred             CCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       304 ~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +|+.|++++|.|..++     ..+.++++|+.|++..|..
T Consensus       242 ~L~~L~L~~N~l~~lp-----~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          242 TLRELHLDNNKLSRVP-----AGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             TCCEEECCSSCCCBCC-----TTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCeecC-----hhhhcCccCCEEECCCCCC
Confidence            9999999999999776     2478899999999988753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.26  E-value=9.2e-12  Score=139.86  Aligned_cols=156  Identities=17%  Similarity=0.161  Sum_probs=121.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|+|++|+|..   ++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus        25 ~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~   94 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR---LPAANFTRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELSQLSD-----KTFA   94 (680)
T ss_dssp             TTCSEEECCSSCCCC---CCGGGGGGGTTCSEEECCSSCCCCCC--TTHHHHCTTCCEEECCSSCCCCCCT-----TTTT
T ss_pred             CCCcEEECCCCCCCC---cCHHHHhCCCcCcEEECCCCccCccC--HHHHhcccCcCEEECCCCccCccCh-----hhhc
Confidence            578899999999998   77777889999999999999998875  4678999999999999999886652     3467


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++.+.-.+              .|.   .....+.+|+.|+|++|.+..++...|.  ++++|+.|++++|
T Consensus        95 ~l~~L~~L~L~~n~l~~--------------~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n  155 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQK--------------IKN---NPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELLLSNN  155 (680)
T ss_dssp             TCTTCSEEECCSSCCCC--------------CCS---CTTTTCTTCCEEECCSSCCSCCCCCSSS--CCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCccCc--------------cCh---hHccccCCCCEEECCCCcccccCchhhc--ccccCCEEEccCC
Confidence            89999999987543211              110   1123578899999999999888877776  7899999999999


Q ss_pred             CCCccchHHHHHHH--hCCCCCccccccCCC
Q 007072          314 PLEQNSVRELLEVL--KGFPCLQSLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l--~~~~~L~sL~ld~p~  342 (619)
                      .+..+.    ...+  .++++|+.|++..+.
T Consensus       156 ~l~~~~----~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          156 KIQALK----SEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCCCBC----HHHHGGGTTCEESEEECTTCC
T ss_pred             cccccC----HHHhhccccccccEEECCCCc
Confidence            888776    2333  356888888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.26  E-value=8e-12  Score=138.23  Aligned_cols=156  Identities=17%  Similarity=0.107  Sum_probs=124.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|+|++|.|..   ++...+.++++|+.|+|++|+|..+.  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus        33 ~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~  102 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIH--EDTFQSQHRLDTLVLTANPLIFMAE-----TALS  102 (606)
T ss_dssp             TTCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCSEECT-----TTTS
T ss_pred             CcCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeC--hhhccCccccCeeeCCCCcccccCh-----hhhc
Confidence            468899999999998   67777899999999999999998875  4678999999999999999987653     3467


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++.+.-.+ .            .|    .....+.+|+.|+|++|.+..++...+.  .+++|+.|++++|
T Consensus       103 ~l~~L~~L~L~~n~i~~-l------------~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n  163 (606)
T 3t6q_A          103 GPKALKHLFFIQTGISS-I------------DF----IPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNN  163 (606)
T ss_dssp             SCTTCCEEECTTSCCSC-G------------GG----SCCTTCTTCCEEECCSSCCCCCCCCTTC--CCTTCCEEECCSS
T ss_pred             ccccccEeeccccCccc-C------------Cc----chhccCCcccEEECCCCcccccCccccc--CCcccCEEEcccC
Confidence            89999999987543321 0            01    1123578999999999999988754454  5999999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCc--cccccCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQ--SLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~--sL~ld~p~  342 (619)
                      .|..+.    ...+.++++|+  +|++..+.
T Consensus       164 ~l~~~~----~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          164 AIHYLS----KEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             CCCEEC----HHHHHTTTTCCSEEEECTTCC
T ss_pred             cccccC----hhhhhhhcccceeEEecCCCc
Confidence            998887    56788899999  66666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.26  E-value=5.2e-12  Score=138.68  Aligned_cols=148  Identities=16%  Similarity=0.086  Sum_probs=117.2

Q ss_pred             cccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccc
Q 007072          161 LEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEI  240 (619)
Q Consensus       161 Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~Lei  240 (619)
                      =++.++..   +|.++.   ++++.|+|++|+|+.++  ...+.++++|+.|+|++|.+....+     ..+.++++|+.
T Consensus        38 c~~~~l~~---vP~~lp---~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~-----~~f~~L~~L~~  104 (635)
T 4g8a_A           38 CMELNFYK---IPDNLP---FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLST  104 (635)
T ss_dssp             CTTSCCSS---CCSSSC---TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCE
T ss_pred             CCCCCcCc---cCCCCC---cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcCh-----hHhcCCCCCCE
Confidence            34455666   665443   48999999999999987  4579999999999999999987763     35788999999


Q ss_pred             cccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccch
Q 007072          241 YNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSV  320 (619)
Q Consensus       241 Ln~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~  320 (619)
                      |+++..+-.+              .|.   ..+..+.+|+.|+|++|.|..+|+..|.  ++++|+.|+|++|.|..+..
T Consensus       105 L~Ls~N~l~~--------------l~~---~~f~~L~~L~~L~Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~~  165 (635)
T 4g8a_A          105 LILTGNPIQS--------------LAL---GAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKL  165 (635)
T ss_dssp             EECTTCCCCE--------------ECG---GGGTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCCC
T ss_pred             EEccCCcCCC--------------CCH---HHhcCCCCCCEEECCCCcCCCCChhhhh--cCcccCeeccccCccccCCC
Confidence            9997543211              111   1123588999999999999999998887  99999999999999987653


Q ss_pred             HHHHHHHhCCCCCccccccCCCC
Q 007072          321 RELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       321 ~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                         +..+.++++|+.|++..|..
T Consensus       166 ---~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          166 ---PEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             ---CGGGGGCTTCCEEECCSSCC
T ss_pred             ---chhhccchhhhhhcccCccc
Confidence               34578899999999988764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.25  E-value=4.4e-12  Score=124.56  Aligned_cols=157  Identities=15%  Similarity=0.105  Sum_probs=106.4

Q ss_pred             CCCceeeeecccCC-CCccccccccccCCCCCccEeecCC-CcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072          152 GDGTVKWLELEDAD-IGDDMLLSLNLSSKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED  229 (619)
Q Consensus       152 g~~~l~~L~Ls~~~-I~~~~li~l~l~~~~p~L~~L~Ls~-NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~  229 (619)
                      +...+++|++++|. |..   ++...+.++++|+.|+|++ |+|+.++  ...+.++++|+.|+|++|.+....+     
T Consensus        53 ~l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~L~~L~l~~n~l~~lp~-----  122 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYID--PDALKELPLLKFLGIFNTGLKMFPD-----  122 (239)
T ss_dssp             TCTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEEC--TTSEECCTTCCEEEEEEECCCSCCC-----
T ss_pred             CCCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcC--HHHhCCCCCCCEEeCCCCCCccccc-----
Confidence            34677888888886 777   6666677888888888887 8888776  3467778888888888888776431     


Q ss_pred             HHhhcCCccc---ccccccccccccccccccccccCCCCCCccccCCCcCCccc-ccccCccccccCcccccCCCCCCCC
Q 007072          230 AILQGCPKLE---IYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVT-SLDLSNRCIHNLVNKAFSPAEMPSL  305 (619)
Q Consensus       230 ~il~~lP~Le---iLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~-~LdLS~N~I~~Lp~~~f~~~~L~~L  305 (619)
                        +..+++|+   .|+++.....+             ..|.   .....+.+|+ .|+|++|.|..+|...|.  . ++|
T Consensus       123 --~~~l~~L~~L~~L~l~~N~~l~-------------~i~~---~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~-~~L  181 (239)
T 2xwt_C          123 --LTKVYSTDIFFILEITDNPYMT-------------SIPV---NAFQGLCNETLTLKLYNNGFTSVQGYAFN--G-TKL  181 (239)
T ss_dssp             --CTTCCBCCSEEEEEEESCTTCC-------------EECT---TTTTTTBSSEEEEECCSCCCCEECTTTTT--T-CEE
T ss_pred             --cccccccccccEEECCCCcchh-------------hcCc---ccccchhcceeEEEcCCCCCcccCHhhcC--C-CCC
Confidence              45666666   66665321111             0010   0122466777 888888888888777775  3 778


Q ss_pred             cccccCCCC-CCccchHHHHHHHhCC-CCCccccccCCCC
Q 007072          306 SHLNIRGNP-LEQNSVRELLEVLKGF-PCLQSLGVDIPGP  343 (619)
Q Consensus       306 ~~LnLs~N~-i~~i~~~~l~~~l~~~-~~L~sL~ld~p~~  343 (619)
                      +.|++++|+ |..++    ...+.++ ++|+.|++..+..
T Consensus       182 ~~L~L~~n~~l~~i~----~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          182 DAVYLNKNKYLTVID----KDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             EEEECTTCTTCCEEC----TTTTTTCSBCCSEEECTTCCC
T ss_pred             CEEEcCCCCCcccCC----HHHhhccccCCcEEECCCCcc
Confidence            888888884 77766    3456777 7888888776653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.25  E-value=5.3e-12  Score=123.75  Aligned_cols=145  Identities=18%  Similarity=0.220  Sum_probs=112.3

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      +.+++++|+|..   +|..+   .+.++.|+|++|.|..++. ...+.++++|+.|+|++|.+....++           
T Consensus        14 ~~l~~s~n~l~~---iP~~~---~~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~-----------   75 (220)
T 2v70_A           14 TTVDCSNQKLNK---IPEHI---PQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEG-----------   75 (220)
T ss_dssp             TEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTT-----------
T ss_pred             CEeEeCCCCccc---CccCC---CCCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHH-----------
Confidence            468899999888   66544   3467899999999998741 23578999999999999998766521           


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                         ....+.+|+.|+|++|.|..+++..|.  ++++|+.|+|++|.|.
T Consensus        76 -----------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           76 -----------------------------------AFEGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRSNRIT  118 (220)
T ss_dssp             -----------------------------------TTTTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTTSCCC
T ss_pred             -----------------------------------HhCCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCCCcCC
Confidence                                               112477899999999999999999897  8999999999999999


Q ss_pred             ccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          317 QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       317 ~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .+.    +..+.++++|+.|++..|..-+.. -..+..+++|+.|
T Consensus       119 ~~~----~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L  158 (220)
T 2v70_A          119 CVG----NDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTL  158 (220)
T ss_dssp             CBC----TTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEE
T ss_pred             eEC----HhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEE
Confidence            886    456889999999999988642221 1334456666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.25  E-value=4.1e-12  Score=118.11  Aligned_cols=63  Identities=29%  Similarity=0.421  Sum_probs=50.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccc
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKK  222 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~  222 (619)
                      ..++.|++++|+|.+.. +| ..+..+++|+.|+|++|.|..+    ..+.++++|+.|+|++|.+...
T Consensus        24 ~~L~~L~l~~n~l~~~~-i~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGK-IE-GLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGG   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTB-CS-SCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSC
T ss_pred             ccCCEEECCCCCCChhh-HH-HHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchH
Confidence            67889999999988311 33 3467889999999999998887    5678899999999999988764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.25  E-value=2.4e-12  Score=132.45  Aligned_cols=172  Identities=14%  Similarity=0.140  Sum_probs=108.5

Q ss_pred             CCceeeeeccc-CCCCccccccccccCCCCCccEeecCCCccc-chhhHHHHHhcccccceeecCCCcccccccchhhhH
Q 007072          153 DGTVKWLELED-ADIGDDMLLSLNLSSKFPDLQALSLCGNKLE-TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA  230 (619)
Q Consensus       153 ~~~l~~L~Ls~-~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~-~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~  230 (619)
                      ...+++|++++ |.|..  .+| ..+.++++|++|+|++|.|. .++   ..+.++++|+.|+|++|.+....+     .
T Consensus        75 l~~L~~L~L~~~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p-----~  143 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVG--PIP-PAIAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVTLDFSYNALSGTLP-----P  143 (313)
T ss_dssp             CTTCSEEEEEEETTEES--CCC-GGGGGCTTCSEEEEEEECCEEECC---GGGGGCTTCCEEECCSSEEESCCC-----G
T ss_pred             CCCCCeeeCCCCCcccc--cCC-hhHhcCCCCCEEECcCCeeCCcCC---HHHhCCCCCCEEeCCCCccCCcCC-----h
Confidence            35677777774 66665  233 33456777777777777776 333   456777778888888777764332     2


Q ss_pred             HhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCC-cccccccCccccccCcccccCCCCCCCCcccc
Q 007072          231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQ-SVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN  309 (619)
Q Consensus       231 il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~-~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln  309 (619)
                      .+..+++|+.|+++...-.+             ..|..+    ..+. +|+.|+|++|.+....+..|.  .++ |+.|+
T Consensus       144 ~~~~l~~L~~L~L~~N~l~~-------------~~p~~l----~~l~~~L~~L~L~~N~l~~~~~~~~~--~l~-L~~L~  203 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRISG-------------AIPDSY----GSFSKLFTSMTISRNRLTGKIPPTFA--NLN-LAFVD  203 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEE-------------ECCGGG----GCCCTTCCEEECCSSEEEEECCGGGG--GCC-CSEEE
T ss_pred             HHhcCCCCCeEECcCCcccC-------------cCCHHH----hhhhhcCcEEECcCCeeeccCChHHh--CCc-ccEEE
Confidence            35667777777776433211             112222    1344 788889999988855454554  455 88999


Q ss_pred             cCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +++|.|....    +..+.++++|+.|++..+..-+...  .+..+++|+.|
T Consensus       204 Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L  249 (313)
T 1ogq_A          204 LSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGL  249 (313)
T ss_dssp             CCSSEEEECC----GGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEE
T ss_pred             CcCCcccCcC----CHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEE
Confidence            9999887655    4567888999999988775322211  13445555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.25  E-value=5.4e-12  Score=132.02  Aligned_cols=89  Identities=20%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CceeeeecccCCCCccccccc----cccCCCC-CccEeecCCCcccchh--hHHHHHhcc-cccceeecCCCcccccccc
Q 007072          154 GTVKWLELEDADIGDDMLLSL----NLSSKFP-DLQALSLCGNKLETVE--IIVQEVTKL-KNLRALWLNNNPVLKKCDH  225 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l----~l~~~~p-~L~~L~Ls~NkL~~~~--~v~~~l~~L-~~Lk~L~Ls~Npi~~~~~~  225 (619)
                      ..++.|+|++|.|.+   ++.    .....+| +|+.|+|++|.|....  .....+.+. ++|+.|+|++|.+......
T Consensus        22 ~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           22 HGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            346777777777776   333    3344666 6777777777776643  222333333 7777777777776654432


Q ss_pred             hhhhHHhhcC-Ccccccccccc
Q 007072          226 CMEDAILQGC-PKLEIYNSNFT  246 (619)
Q Consensus       226 ~~~~~il~~l-P~LeiLn~~~T  246 (619)
                      .+ ...+..+ ++|+.|+++..
T Consensus        99 ~l-~~~l~~~~~~L~~L~Ls~N  119 (362)
T 3goz_A           99 EL-VKTLAAIPFTITVLDLGWN  119 (362)
T ss_dssp             HH-HHHHHTSCTTCCEEECCSS
T ss_pred             HH-HHHHHhCCCCccEEECcCC
Confidence            22 1223344 66666666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.25  E-value=6.6e-12  Score=120.35  Aligned_cols=127  Identities=18%  Similarity=0.222  Sum_probs=84.6

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      +.|++++++|..   +|..+.   ++|+.|+|++|+|..++. ...+.++++|+.|+|++|.+....+.     .+..  
T Consensus        11 ~~l~~s~~~l~~---ip~~~~---~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~--   76 (192)
T 1w8a_A           11 TTVDCTGRGLKE---IPRDIP---LHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPN-----AFEG--   76 (192)
T ss_dssp             TEEECTTSCCSS---CCSCCC---TTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTT-----TTTT--
T ss_pred             CEEEcCCCCcCc---CccCCC---CCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCCCcCHh-----HcCC--
Confidence            568899999887   665443   389999999999988762 12478899999999999998766422     1222  


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                             +.+|+.|+|++|.|..+++..|.  .+++|++|+|++|.|.
T Consensus        77 ---------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           77 ---------------------------------------ASHIQELQLGENKIKEISNKMFL--GLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             ---------------------------------------CTTCCEEECCSCCCCEECSSSST--TCTTCCEEECCSSCCC
T ss_pred             ---------------------------------------cccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCC
Confidence                                                   45566666666666666665555  5666666666666665


Q ss_pred             ccchHHHHHHHhCCCCCccccccCCC
Q 007072          317 QNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       317 ~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+.    +..+..+++|+.|++..|.
T Consensus       116 ~~~----~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          116 CVM----PGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EEC----TTSSTTCTTCCEEECTTCC
T ss_pred             eeC----HHHhhcCCCCCEEEeCCCC
Confidence            544    2345556666666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.24  E-value=4.1e-12  Score=139.21  Aligned_cols=150  Identities=16%  Similarity=0.172  Sum_probs=95.4

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .+++|++++|.|..   ++.   ..+++|+.|+|++|.|..+.  ...+.++++|+.|+|++|.+....+.    .+...
T Consensus       100 ~L~~L~L~~N~l~~---~~~---~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~  167 (487)
T 3oja_A          100 SIETLHAANNNISR---VSC---SRGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFA----ELAAS  167 (487)
T ss_dssp             TCCEEECCSSCCCC---EEE---CCCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGG----GGGGG
T ss_pred             CcCEEECcCCcCCC---CCc---cccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChH----HHhhh
Confidence            44455555555544   221   24577777777777777664  23566677777777777777665422    22345


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072          235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP  314 (619)
Q Consensus       235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~  314 (619)
                      +++|+.|+++...-.+                  + .....+.+|+.|+||+|.|..+|+. |.  .+++|+.|+|++|.
T Consensus       168 l~~L~~L~Ls~N~l~~------------------~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~--~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYD------------------V-KGQVVFAKLKTLDLSSNKLAFMGPE-FQ--SAAGVTWISLRNNK  225 (487)
T ss_dssp             TTTCCEEECTTSCCCE------------------E-ECCCCCTTCCEEECCSSCCCEECGG-GG--GGTTCSEEECTTSC
T ss_pred             CCcccEEecCCCcccc------------------c-cccccCCCCCEEECCCCCCCCCCHh-Hc--CCCCccEEEecCCc
Confidence            6777777776433211                  0 1112367788888888888888776 33  67888888888888


Q ss_pred             CCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          315 LEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      |..++     ..+..+++|+.|++..|..
T Consensus       226 l~~lp-----~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          226 LVLIE-----KALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCEEC-----TTCCCCTTCCEEECTTCCB
T ss_pred             Ccccc-----hhhccCCCCCEEEcCCCCC
Confidence            87765     2467778888888877753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.24  E-value=6.9e-12  Score=131.53  Aligned_cols=165  Identities=20%  Similarity=0.233  Sum_probs=125.4

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHh-cccccceeecCCCcccccccchhhhHHhhcC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVT-KLKNLRALWLNNNPVLKKCDHCMEDAILQGC  235 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~-~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l  235 (619)
                      +.+++++++|..   +|..+.   ++++.|+|++|+|..++  ...+. ++++|+.|+|++|.+....+     ..+..+
T Consensus        21 ~~l~c~~~~l~~---iP~~~~---~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l   87 (361)
T 2xot_A           21 NILSCSKQQLPN---VPQSLP---SYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISS-----EAFVPV   87 (361)
T ss_dssp             TEEECCSSCCSS---CCSSCC---TTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCCEECT-----TTTTTC
T ss_pred             CEEEeCCCCcCc---cCccCC---CCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCCccCh-----hhccCC
Confidence            468899999988   665543   56899999999999987  34566 89999999999999987763     346789


Q ss_pred             CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072          236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i  315 (619)
                      ++|+.|+++...-..              .+.   ..+..+.+|+.|+|++|.|..+++..|.  ++++|+.|+|++|.|
T Consensus        88 ~~L~~L~Ls~N~l~~--------------~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~N~l  148 (361)
T 2xot_A           88 PNLRYLDLSSNHLHT--------------LDE---FLFSDLQALEVLLLYNNHIVVVDRNAFE--DMAQLQKLYLSQNQI  148 (361)
T ss_dssp             TTCCEEECCSSCCCE--------------ECT---TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCCcCCc--------------CCH---HHhCCCcCCCEEECCCCcccEECHHHhC--CcccCCEEECCCCcC
Confidence            999999987533211              010   1233588999999999999999988887  899999999999999


Q ss_pred             CccchHHHHHHH---hCCCCCccccccCCCCCCchhHHHhhhcCcc
Q 007072          316 EQNSVRELLEVL---KGFPCLQSLGVDIPGPLGESAIEILESLPTL  358 (619)
Q Consensus       316 ~~i~~~~l~~~l---~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L  358 (619)
                      ..++    ...+   .++++|+.|++..|..- .-....+..++++
T Consensus       149 ~~l~----~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~  189 (361)
T 2xot_A          149 SRFP----VELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAW  189 (361)
T ss_dssp             CSCC----GGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHH
T ss_pred             CeeC----HHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHh
Confidence            9988    3334   67999999999988642 2223445555553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.24  E-value=1.1e-11  Score=119.26  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=111.7

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      +.++.+++++..   +|..+   .++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+.           
T Consensus        10 ~~v~c~~~~l~~---~p~~~---~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-----------   70 (208)
T 2o6s_A           10 TTVECYSQGRTS---VPTGI---PAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQSLPNG-----------   70 (208)
T ss_dssp             TEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTT-----------
T ss_pred             CEEEecCCCccC---CCCCC---CCCCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCccCccChh-----------
Confidence            356788888877   55443   468999999999999876  45678999999999999987754311           


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                         ....+.+|+.|+|++|.|..++...|.  .+++|+.|++++|.|.
T Consensus        71 -----------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           71 -----------------------------------VFNKLTSLTYLNLSTNQLQSLPNGVFD--KLTQLKELALNTNQLQ  113 (208)
T ss_dssp             -----------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCC
T ss_pred             -----------------------------------hcCCCCCcCEEECCCCcCCccCHhHhc--CccCCCEEEcCCCcCc
Confidence                                               012477899999999999999998887  8999999999999999


Q ss_pred             ccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          317 QNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       317 ~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .+.    ...+.++++|+.|++..+..-+. ....+..+++|+.|
T Consensus       114 ~~~----~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L  153 (208)
T 2o6s_A          114 SLP----DGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYI  153 (208)
T ss_dssp             CCC----TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEE
T ss_pred             ccC----HhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEE
Confidence            887    45578999999999988753221 12334556666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.24  E-value=6.4e-12  Score=118.28  Aligned_cols=132  Identities=23%  Similarity=0.322  Sum_probs=79.1

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|+|..   + ..+...+|+|+.|+|++|.|+.+    ..+.++++|+.|+|++|.+....++     ++
T Consensus        18 ~~~L~~L~l~~n~l~~---i-~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~-----~~   84 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV---I-ENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEG-----LD   84 (176)
T ss_dssp             TTSCEEEECTTSCCCS---C-CCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSC-----HH
T ss_pred             cCCceEEEeeCCCCch---h-HHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcc-----hh
Confidence            3566777777777776   2 23444455777777777777765    3566777777777777776644311     01


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs  311 (619)
                      .                                         .+.+|+.|+|++|.|..+|. ..+.  .+++|+.|+++
T Consensus        85 ~-----------------------------------------~l~~L~~L~L~~N~i~~~~~~~~l~--~l~~L~~L~l~  121 (176)
T 1a9n_A           85 Q-----------------------------------------ALPDLTELILTNNSLVELGDLDPLA--SLKSLTYLCIL  121 (176)
T ss_dssp             H-----------------------------------------HCTTCCEEECCSCCCCCGGGGGGGG--GCTTCCEEECC
T ss_pred             h-----------------------------------------cCCCCCEEECCCCcCCcchhhHhhh--cCCCCCEEEec
Confidence            1                                         24566677777777777665 3443  67777777777


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      +|++..++... ...+..+++|+.|++..+
T Consensus       122 ~N~i~~~~~~~-~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          122 RNPVTNKKHYR-LYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             SSGGGGSTTHH-HHHHHHCTTCSEETTEEC
T ss_pred             CCCCCCcHhHH-HHHHHHCCccceeCCCcC
Confidence            77776555110 123555555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=1.2e-11  Score=116.11  Aligned_cols=126  Identities=20%  Similarity=0.261  Sum_probs=86.2

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      +.+++++++|..   +|..+   .++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....+.     .+.   
T Consensus        10 ~~l~~~~~~l~~---~p~~~---~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~---   73 (177)
T 2o6r_A           10 TEIRCNSKGLTS---VPTGI---PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQSLPDG-----VFD---   73 (177)
T ss_dssp             TEEECCSSCCSS---CCTTC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTT-----TTT---
T ss_pred             CEEEecCCCCcc---CCCCC---CCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcceEeChh-----Hcc---
Confidence            467888888887   56443   378999999999998776  44678899999999999987755421     122   


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                            .+.+|+.|+|++|.|..+|...|.  .+++|+.|++++|.|.
T Consensus        74 --------------------------------------~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           74 --------------------------------------KLTKLTILYLHENKLQSLPNGVFD--KLTQLKELALDTNQLK  113 (177)
T ss_dssp             --------------------------------------TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCS
T ss_pred             --------------------------------------CCCccCEEECCCCCccccCHHHhh--CCcccCEEECcCCcce
Confidence                                                  245666666666666666666555  5666666666666666


Q ss_pred             ccchHHHHHHHhCCCCCccccccCCC
Q 007072          317 QNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       317 ~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .++    ...+.++++|+.|++..|.
T Consensus       114 ~~~----~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          114 SVP----DGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCC----TTTTTTCTTCCEEECCSSC
T ss_pred             EeC----HHHhcCCcccCEEEecCCC
Confidence            655    3345566666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.23  E-value=8.3e-12  Score=119.60  Aligned_cols=145  Identities=20%  Similarity=0.256  Sum_probs=113.1

Q ss_pred             CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccc
Q 007072          178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC  257 (619)
Q Consensus       178 ~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc  257 (619)
                      ..+++|+.|+|++|.|.+++    .+..+++|+.|+|++|.+....       .+..+++|+.|+++...-.+       
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~l~~n~l~~-------  102 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATNYN-------PISGLSNLERLRIMGKDVTS-------  102 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT----TGGGCTTCSEEEEESCCCSCCG-------GGTTCTTCCEEEEECTTCBG-------
T ss_pred             hhcCCccEEeccCCCccChH----HHhcCCCCCEEEccCCCCCcch-------hhhcCCCCCEEEeECCccCc-------
Confidence            57899999999999999876    4889999999999999776553       26789999999987533221       


Q ss_pred             ccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC-CCccchHHHHHHHhCCCCCccc
Q 007072          258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP-LEQNSVRELLEVLKGFPCLQSL  336 (619)
Q Consensus       258 ~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~-i~~i~~~~l~~~l~~~~~L~sL  336 (619)
                            ..|.    ....+.+|+.|+|++|.|.......|.  .+++|+.|++++|. +.+++      .+.++++|+.|
T Consensus       103 ------~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L  164 (197)
T 4ezg_A          103 ------DKIP----NLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDIM------PLKTLPELKSL  164 (197)
T ss_dssp             ------GGSC----CCTTCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCSCTBCCCCG------GGGGCSSCCEE
T ss_pred             ------ccCh----hhcCCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccCCCCccccH------hhcCCCCCCEE
Confidence                  0111    223588999999999999986566666  89999999999998 88876      48899999999


Q ss_pred             cccCCCCCCchhHHHhhhcCccccc
Q 007072          337 GVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       337 ~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      ++..+..-.   ...+..+|+|+.|
T Consensus       165 ~l~~n~i~~---~~~l~~l~~L~~L  186 (197)
T 4ezg_A          165 NIQFDGVHD---YRGIEDFPKLNQL  186 (197)
T ss_dssp             ECTTBCCCC---CTTGGGCSSCCEE
T ss_pred             ECCCCCCcC---hHHhccCCCCCEE
Confidence            998876422   1245667777766

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.23  E-value=5.1e-12  Score=129.58  Aligned_cols=86  Identities=20%  Similarity=0.185  Sum_probs=68.9

Q ss_pred             CCCceeeeecccCCCCcccccccccc-CCCCCccEeecCCCcccchhhHHHHHhcc-----cccceeecCCCcccccccc
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLS-SKFPDLQALSLCGNKLETVEIIVQEVTKL-----KNLRALWLNNNPVLKKCDH  225 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~-~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L-----~~Lk~L~Ls~Npi~~~~~~  225 (619)
                      +...+++|++++|+|..  .+|..++ ..+++|+.|+|++|+|..++   ..+.++     ++|+.|+|++|.+....+.
T Consensus        93 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           93 GISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATRD---AWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TTSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSSS---SHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             CcCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcchh---HHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            46789999999999986  4666654 88999999999999999885   445555     8999999999998876532


Q ss_pred             hhhhHHhhcCCccccccccccc
Q 007072          226 CMEDAILQGCPKLEIYNSNFTI  247 (619)
Q Consensus       226 ~~~~~il~~lP~LeiLn~~~T~  247 (619)
                           .+..+++|+.|+++...
T Consensus       168 -----~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          168 -----QVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             -----TCCCCSSCCEEECCSCT
T ss_pred             -----HhccCCCCCEEECCCCC
Confidence                 35778899988887544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.23  E-value=6.2e-12  Score=137.45  Aligned_cols=156  Identities=21%  Similarity=0.259  Sum_probs=115.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|+|..   ++...+.++++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus        28 ~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~   97 (570)
T 2z63_A           28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLAL-----GAFS   97 (570)
T ss_dssp             SSCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT-----TTTT
T ss_pred             ccccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccC--cccccCchhCCEEeCcCCcCCccCH-----hhhc
Confidence            468899999999988   66677789999999999999999876  4578899999999999999887653     3467


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~  312 (619)
                      ++++|+.|+++.++-..              .|.   .....+.+|+.|+|++|.+..++ +..|.  ++++|++|++++
T Consensus        98 ~l~~L~~L~L~~n~l~~--------------l~~---~~~~~l~~L~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~l~~  158 (570)
T 2z63_A           98 GLSSLQKLVAVETNLAS--------------LEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSS  158 (570)
T ss_dssp             TCTTCCEEECTTSCCCC--------------STT---CSCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECTT
T ss_pred             Ccccccccccccccccc--------------CCC---ccccccccccEEecCCCccceecChhhhc--ccCCCCEEeCcC
Confidence            89999999987543221              010   01235788999999999988743 34454  789999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCC----ccccccCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCL----QSLGVDIPG  342 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L----~sL~ld~p~  342 (619)
                      |.+..+..    ..+.++++|    .+|++..+.
T Consensus       159 n~l~~~~~----~~~~~l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          159 NKIQSIYC----TDLRVLHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             SCCCEECG----GGGHHHHTCTTCCCEEECTTCC
T ss_pred             CccceecH----HHccchhccchhhhhcccCCCC
Confidence            98887752    223344444    556655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.22  E-value=3e-11  Score=131.41  Aligned_cols=75  Identities=16%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|.|..   ++   ...+++|+.|+|++|+|+.++     +.++++|+.|+|++|.+....        +
T Consensus        84 l~~L~~L~Ls~N~l~~---~~---~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~--------l  144 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTN---LD---VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID--------V  144 (457)
T ss_dssp             CTTCSEEECCSSCCSC---CC---CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC--------C
T ss_pred             CCCCCEEECcCCCCce---ee---cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec--------c
Confidence            3566777777777666   23   456777777777777777653     567777777777777766543        4


Q ss_pred             hcCCcccccccccc
Q 007072          233 QGCPKLEIYNSNFT  246 (619)
Q Consensus       233 ~~lP~LeiLn~~~T  246 (619)
                      ..+++|+.|+++..
T Consensus       145 ~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          145 SHNTQLTELDCHLN  158 (457)
T ss_dssp             TTCTTCCEEECTTC
T ss_pred             ccCCcCCEEECCCC
Confidence            56667776666544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.21  E-value=1e-11  Score=116.90  Aligned_cols=134  Identities=17%  Similarity=0.167  Sum_probs=107.1

Q ss_pred             cCCCCCccEeecCCCcccchhhHHHHHhccc-ccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccc
Q 007072          177 SSKFPDLQALSLCGNKLETVEIIVQEVTKLK-NLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALG  255 (619)
Q Consensus       177 ~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~-~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~  255 (619)
                      +..+++|+.|+|++|.|..++    .+.++. +|+.|+|++|.+....                                
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~----~~~~~~~~L~~L~Ls~N~l~~~~--------------------------------   58 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIE----NLGATLDQFDAIDFSDNEIRKLD--------------------------------   58 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCC----CGGGGTTCCSEEECCSSCCCEEC--------------------------------
T ss_pred             cCCcCCceEEEeeCCCCchhH----HhhhcCCCCCEEECCCCCCCccc--------------------------------
Confidence            457899999999999999875    245555 9999999999876542                                


Q ss_pred             ccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcc
Q 007072          256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS  335 (619)
Q Consensus       256 fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~s  335 (619)
                                      ....+.+|+.|+|++|.|..+|+..|.  .+++|+.|+|++|.|.+++.   ...+.++++|+.
T Consensus        59 ----------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~  117 (176)
T 1a9n_A           59 ----------------GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLVELGD---LDPLASLKSLTY  117 (176)
T ss_dssp             ----------------CCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCE
T ss_pred             ----------------ccccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCCCcCCcchh---hHhhhcCCCCCE
Confidence                            011367899999999999999988876  89999999999999988762   135789999999


Q ss_pred             ccccCCCCCCc--hhHHHhhhcCccccccCccch
Q 007072          336 LGVDIPGPLGE--SAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       336 L~ld~p~~l~~--~~~~il~~lp~L~~LNg~~~s  367 (619)
                      |++..|..-..  +...++..+|+|+.|++....
T Consensus       118 L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99998864222  224578999999999887765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.21  E-value=3e-11  Score=133.29  Aligned_cols=82  Identities=20%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|+|++|.|..   ++++.+.++++|+.|+|++|+|+.++..     ++++|+.|+|++|.+.....    +..
T Consensus        74 ~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~----p~~  141 (562)
T 3a79_B           74 FLSELRVLRLSHNRIRS---LDFHVFLFNQDLEYLDVSHNRLQNISCC-----PMASLRHLDLSFNDFDVLPV----CKE  141 (562)
T ss_dssp             TCTTCCEEECCSCCCCE---ECTTTTTTCTTCCEEECTTSCCCEECSC-----CCTTCSEEECCSSCCSBCCC----CGG
T ss_pred             cCCCccEEECCCCCCCc---CCHHHhCCCCCCCEEECCCCcCCccCcc-----ccccCCEEECCCCCccccCc----hHh
Confidence            34677788888888777   5566667778888888888877777632     67777777777777765430    123


Q ss_pred             hhcCCccccccccc
Q 007072          232 LQGCPKLEIYNSNF  245 (619)
Q Consensus       232 l~~lP~LeiLn~~~  245 (619)
                      +..+++|+.|+++.
T Consensus       142 ~~~l~~L~~L~L~~  155 (562)
T 3a79_B          142 FGNLTKLTFLGLSA  155 (562)
T ss_dssp             GGGCTTCCEEEEEC
T ss_pred             hcccCcccEEecCC
Confidence            45666666666544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.21  E-value=6e-12  Score=139.22  Aligned_cols=137  Identities=23%  Similarity=0.231  Sum_probs=100.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|.|..   ++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....++     .+.
T Consensus        32 ~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~~  101 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIE--DKAWHGLHHLSNLILTGNPIQSFSPG-----SFS  101 (606)
T ss_dssp             TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCCCCTT-----SST
T ss_pred             CCcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccC--HHHhhchhhcCEeECCCCcccccChh-----hcC
Confidence            568889999999988   67777889999999999999998875  35788999999999999998876533     367


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~  312 (619)
                      .+++|+.|+++.+...+-             .|.    ....+.+|+.|+|++|.+..+. +..|.  ++++|++|++++
T Consensus       102 ~l~~L~~L~L~~n~l~~~-------------~~~----~~~~l~~L~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~Ls~  162 (606)
T 3vq2_A          102 GLTSLENLVAVETKLASL-------------ESF----PIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSY  162 (606)
T ss_dssp             TCTTCCEEECTTSCCCCS-------------SSS----CCTTCTTCCEEECCSSCCCCCCCCGGGG--TCTTCCEEECCS
T ss_pred             CcccCCEEEccCCccccc-------------ccc----ccCCCCCCCEEeCCCCcccceechHhHh--hcCCCCEEEccC
Confidence            889999998875443210             001    1224677788888888877532 23443  678888888888


Q ss_pred             CCCCccc
Q 007072          313 NPLEQNS  319 (619)
Q Consensus       313 N~i~~i~  319 (619)
                      |.+..+.
T Consensus       163 n~l~~~~  169 (606)
T 3vq2_A          163 NYIQTIT  169 (606)
T ss_dssp             SCCCEEC
T ss_pred             CcceecC
Confidence            8777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.21  E-value=7.3e-12  Score=136.88  Aligned_cols=159  Identities=17%  Similarity=0.146  Sum_probs=100.4

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+++|++++|.|...... ......+++|+.|+|++|.+..++.   .+.++++|+.|+|++|.+....+    ...
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~l~~n~l~~~~~----~~~  416 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCC-SQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSE----FSV  416 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEE-EHHHHTCSCCCEEECCSCSEEEEEE---EEETCTTCCEEECTTSEEESCTT----SCT
T ss_pred             cCCCCCEEeCcCCccCccccc-cccccccCccCEEECCCCccccccc---cccccCCCCEEEccCCccccccc----hhh
Confidence            457788889999888761100 2334578888888888888887763   27788888888888888776532    123


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccc--cCcccccCCCCCCCCcccc
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIH--NLVNKAFSPAEMPSLSHLN  309 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~--~Lp~~~f~~~~L~~L~~Ln  309 (619)
                      +..+++|+.|+++.....+             ..|.    ....+.+|+.|+|++|.+.  .+| ..|.  .+++|+.|+
T Consensus       417 ~~~l~~L~~L~l~~n~l~~-------------~~~~----~~~~l~~L~~L~l~~n~l~~~~~p-~~~~--~l~~L~~L~  476 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRV-------------AFNG----IFNGLSSLEVLKMAGNSFQENFLP-DIFT--ELRNLTFLD  476 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEE-------------CCTT----TTTTCTTCCEEECTTCEEGGGEEC-SCCT--TCTTCCEEE
T ss_pred             hhcCCCCCEEeCcCCcccc-------------cchh----hhhcCCcCcEEECcCCcCccccch-hhhh--cccCCCEEE
Confidence            5678888888876543221             0111    1123566677777777665  243 3333  566777777


Q ss_pred             cCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |++|.+..+.    +..+.++++|+.|++..+.
T Consensus       477 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          477 LSQCQLEQLS----PTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             CTTSCCCEEC----TTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccccCC----hhhhhcccCCCEEeCCCCc
Confidence            7777666654    3345666677777666553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=2.6e-11  Score=124.04  Aligned_cols=184  Identities=21%  Similarity=0.202  Sum_probs=129.7

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCC-cccccccchhhh
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNN-PVLKKCDHCMED  229 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~N-pi~~~~~~~~~~  229 (619)
                      +...++.|++++|.|.+   ..+.....+++|+.|+|++| .+.... +...+.++++|+.|+|++| .+....    ..
T Consensus       116 ~~~~L~~L~L~~~~l~~---~~~~~l~~~~~L~~L~L~~~~~l~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~----~~  187 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSD---PIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKH----VQ  187 (336)
T ss_dssp             TBCCCSEEECTTCBCCH---HHHHHHTTCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHH----HH
T ss_pred             hCCCCCEEeCcCcccCH---HHHHHHhcCCCCCEEECCCCCCCCHHH-HHHHHhcCCCCCEEcCCCCCCcChHH----HH
Confidence            34789999999999887   33344556999999999999 677532 3467899999999999999 776432    35


Q ss_pred             HHhhcCC-ccccccccccc-ccccccccccccccCCCCCCccccCCCcCCcccccccCccc-cccCcccccCCCCCCCCc
Q 007072          230 AILQGCP-KLEIYNSNFTI-NFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLS  306 (619)
Q Consensus       230 ~il~~lP-~LeiLn~~~T~-n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~-I~~Lp~~~f~~~~L~~L~  306 (619)
                      .++..+| +|+.|+++... ..+.-.               +......+.+|+.|+|++|. ++......+.  .+++|+
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~---------------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~  250 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSD---------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQ  250 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHH---------------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCC
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHH---------------HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh--CCCCCC
Confidence            5678899 99999987543 111000               00111247799999999999 6543333444  789999


Q ss_pred             ccccCCCC-CCccchHHHHHHHhCCCCCccccccCCCCCCchhH-HHhhhcCccccccCccch
Q 007072          307 HLNIRGNP-LEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAI-EILESLPTLCTLNGVTAS  367 (619)
Q Consensus       307 ~LnLs~N~-i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~-~il~~lp~L~~LNg~~~s  367 (619)
                      +|++++|. +.+..    ...+.++++|+.|++..+  ++.... .+...+|+|. +++-.++
T Consensus       251 ~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~-l~~n~l~  306 (336)
T 2ast_B          251 HLSLSRCYDIIPET----LLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ-INCSHFT  306 (336)
T ss_dssp             EEECTTCTTCCGGG----GGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE-ESCCCSC
T ss_pred             EeeCCCCCCCCHHH----HHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE-EecccCc
Confidence            99999995 43332    245788999999999987  444443 3445688887 4444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.19  E-value=1e-11  Score=115.43  Aligned_cols=134  Identities=20%  Similarity=0.169  Sum_probs=93.9

Q ss_pred             CCCCccEeecCCCccc--chhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF  256 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~--~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~f  256 (619)
                      ..++|+.|+|++|.|.  .++   ..+.++++|+.|+|++|.+....       .+..+++|+.|+++...-.+      
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~Ls~N~l~~------   85 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLISVS-------NLPKLPKLKKLELSENRIFG------   85 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCCCCS-------SCCCCSSCCEEEEESCCCCS------
T ss_pred             CcccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCCChh-------hhccCCCCCEEECcCCcCch------
Confidence            4488999999999998  665   34789999999999999988662       25678888888876433221      


Q ss_pred             cccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcc
Q 007072          257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQS  335 (619)
Q Consensus       257 c~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~s  335 (619)
                             ..|.    ....+.+|+.|+|++|.|..+|. ..|.  .+++|+.|++++|+|..++. -....+.++++|+.
T Consensus        86 -------~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~  151 (168)
T 2ell_A           86 -------GLDM----LAEKLPNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTY  151 (168)
T ss_dssp             -------CCCH----HHHHCTTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCE
T ss_pred             -------HHHH----HHhhCCCCCEEeccCCccCcchhHHHHh--cCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcE
Confidence                   0111    11136778888888888888764 4555  78888888888888876661 00135677777777


Q ss_pred             ccccCCC
Q 007072          336 LGVDIPG  342 (619)
Q Consensus       336 L~ld~p~  342 (619)
                      |++..+.
T Consensus       152 L~l~~n~  158 (168)
T 2ell_A          152 LDGYDRE  158 (168)
T ss_dssp             ETTEETT
T ss_pred             ecCCCCC
Confidence            7766553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.19  E-value=2.4e-11  Score=127.66  Aligned_cols=192  Identities=19%  Similarity=0.152  Sum_probs=107.4

Q ss_pred             CceeeeecccCCCCccccc-cccccCCCCCccEeecCCCcccchh--hHHHHHhcc---------cccceeecCCCcccc
Q 007072          154 GTVKWLELEDADIGDDMLL-SLNLSSKFPDLQALSLCGNKLETVE--IIVQEVTKL---------KNLRALWLNNNPVLK  221 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li-~l~l~~~~p~L~~L~Ls~NkL~~~~--~v~~~l~~L---------~~Lk~L~Ls~Npi~~  221 (619)
                      ..+++|+|++|.|...... .......+++|+.|+|++|.|....  .+...+.++         ++|+.|+|++|++..
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            5566666666666552111 1112245666666666666665332  122334444         666666666666552


Q ss_pred             cccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCcccc-CCCcCCcccccccCcccc-----ccCccc
Q 007072          222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL-RDRPLQSVTSLDLSNRCI-----HNLVNK  295 (619)
Q Consensus       222 ~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~-~~~~L~~L~~LdLS~N~I-----~~Lp~~  295 (619)
                      ..-. .....+..+++|+.|+++..+-.. .++.            .+.. ....+.+|+.|+|++|.|     ..+|. 
T Consensus       174 ~~~~-~l~~~l~~~~~L~~L~L~~n~l~~-~g~~------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-  238 (386)
T 2ca6_A          174 GSMK-EWAKTFQSHRLLHTVKMVQNGIRP-EGIE------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-  238 (386)
T ss_dssp             GGHH-HHHHHHHHCTTCCEEECCSSCCCH-HHHH------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-
T ss_pred             HHHH-HHHHHHHhCCCcCEEECcCCCCCH-hHHH------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-
Confidence            2100 011234556666666655332110 0000            0011 223477899999999998     44554 


Q ss_pred             ccCCCCCCCCcccccCCCCCCccchHHHHHHHhC--CCCCccccccCCCCCCc----hhHHHhhhcCcccccc
Q 007072          296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG--FPCLQSLGVDIPGPLGE----SAIEILESLPTLCTLN  362 (619)
Q Consensus       296 ~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~--~~~L~sL~ld~p~~l~~----~~~~il~~lp~L~~LN  362 (619)
                      .+.  .+++|++|+|++|.|.+.....+...+..  +++|+.|++..|..-..    ....+...+|+|+.|+
T Consensus       239 ~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          239 ALK--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HGG--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHc--cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence            333  68899999999999887766666677744  89999999988764221    1122224568877763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.19  E-value=2.4e-11  Score=127.09  Aligned_cols=187  Identities=19%  Similarity=0.211  Sum_probs=126.4

Q ss_pred             eecccCCCCccccccccccCCCCCccEeecCCCcccchhh--HHHHHhccc-ccceeecCCCcccccccchhhhHHhhcC
Q 007072          159 LELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEI--IVQEVTKLK-NLRALWLNNNPVLKKCDHCMEDAILQGC  235 (619)
Q Consensus       159 L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~--v~~~l~~L~-~Lk~L~Ls~Npi~~~~~~~~~~~il~~l  235 (619)
                      +.++.|+|..   ..+......++|+.|+|++|.|...+.  +...+.+++ +|+.|+|++|.+.......+...+...+
T Consensus         3 ~~ls~n~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSN---PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCC---HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchH---HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            5688888887   444555666779999999999998863  337889999 9999999999998876444433333335


Q ss_pred             CcccccccccccccccccccccccccCCCCCCccccCCCcC-CcccccccCccccccCcccccC--CCCC-CCCcccccC
Q 007072          236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPL-QSVTSLDLSNRCIHNLVNKAFS--PAEM-PSLSHLNIR  311 (619)
Q Consensus       236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L-~~L~~LdLS~N~I~~Lp~~~f~--~~~L-~~L~~LnLs  311 (619)
                      ++|+.|+++...-...-             +..+......+ .+|+.|+|++|.|...+...+.  ...+ ++|++|+|+
T Consensus        80 ~~L~~L~Ls~n~l~~~~-------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  146 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKS-------------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR  146 (362)
T ss_dssp             TTCCEEECCSSCGGGSC-------------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred             CCccEEECcCCcCChHH-------------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence            99999999764432100             00011001123 5788899999998887764432  1133 588899999


Q ss_pred             CCCCCccchHHHHHHHhCCC-CCccccccCCCCCCchh---HHHhhhcC-ccccc
Q 007072          312 GNPLEQNSVRELLEVLKGFP-CLQSLGVDIPGPLGESA---IEILESLP-TLCTL  361 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~-~L~sL~ld~p~~l~~~~---~~il~~lp-~L~~L  361 (619)
                      +|.|.+.....+...+..++ +|++|++..+..-....   ...+..+| +|+.|
T Consensus       147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L  201 (362)
T 3goz_A          147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL  201 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             CCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence            99888888777777788777 88988888775311111   33444553 66665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.18  E-value=3.1e-11  Score=138.93  Aligned_cols=174  Identities=22%  Similarity=0.188  Sum_probs=108.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|.|..   ..+....++++|+.|+|++|+|....  ...+.++++|+.|+|++|++....+     ..+.
T Consensus       466 ~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p-----~~l~  535 (768)
T 3rgz_A          466 KTLETLILDFNDLTG---EIPSGLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNNSFSGNIP-----AELG  535 (768)
T ss_dssp             TTCCEEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEEECC-----GGGG
T ss_pred             CCceEEEecCCcccC---cCCHHHhcCCCCCEEEccCCccCCcC--ChHHhcCCCCCEEECCCCcccCcCC-----HHHc
Confidence            456666677766665   23344556777777777777776321  2456677777777777777765443     2356


Q ss_pred             cCCccccccccccccccccc--cc---------ccc--------ccc-------------------------CCCCC---
Q 007072          234 GCPKLEIYNSNFTINFGEWA--LG---------FCG--------EVY-------------------------DKDNP---  266 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~--l~---------fc~--------~~~-------------------------~~~~p---  266 (619)
                      .+++|+.|+++...-.+.+-  +.         +..        +..                         ....+   
T Consensus       536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  615 (768)
T 3rgz_A          536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI  615 (768)
T ss_dssp             GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred             CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence            77888877775433222110  00         000        000                         00000   


Q ss_pred             ------CccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072          267 ------SSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI  340 (619)
Q Consensus       267 ------~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~  340 (619)
                            +.+......+.+|+.||||+|.+....+..|.  ++++|+.|+|++|.|...-    +..+.++++|++|++..
T Consensus       616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~i----p~~l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHNDISGSI----PDEVGDLRGLNILDLSS  689 (768)
T ss_dssp             TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG--GCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECCS
T ss_pred             ccceecccCchhhhccccccEEECcCCcccccCCHHHh--ccccCCEEeCcCCccCCCC----ChHHhCCCCCCEEECCC
Confidence                  00001223467899999999999955555555  7999999999999997433    46789999999999988


Q ss_pred             CCC
Q 007072          341 PGP  343 (619)
Q Consensus       341 p~~  343 (619)
                      |..
T Consensus       690 N~l  692 (768)
T 3rgz_A          690 NKL  692 (768)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.18  E-value=1.3e-10  Score=125.48  Aligned_cols=144  Identities=22%  Similarity=0.258  Sum_probs=75.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|++++|.|..   ++  ....+++|+.|+|++|.+..+..    +..+++|+.|+|++|.+....       .+.
T Consensus       177 ~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~-------~l~  240 (466)
T 1o6v_A          177 TTLERLDISSNKVSD---IS--VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKDIG-------TLA  240 (466)
T ss_dssp             TTCCEEECCSSCCCC---CG--GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCG-------GGG
T ss_pred             CCCCEEECcCCcCCC---Ch--hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcccch-------hhh
Confidence            456666666666555   11  23456666666666666665542    455666666666666655432       144


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++...-.+..                   ....+.+|+.|+|++|.+..++.  +.  .+++|+.|++++|
T Consensus       241 ~l~~L~~L~l~~n~l~~~~-------------------~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n  297 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLA-------------------PLSGLTKLTELKLGANQISNISP--LA--GLTALTNLELNEN  297 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCG-------------------GGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSS
T ss_pred             cCCCCCEEECCCCccccch-------------------hhhcCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCC
Confidence            5666666665532221100                   01234455555555555555544  22  4555555555555


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+..+.      .+..+++|+.|++..+.
T Consensus       298 ~l~~~~------~~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          298 QLEDIS------PISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CCSCCG------GGGGCTTCSEEECCSSC
T ss_pred             cccCch------hhcCCCCCCEEECcCCc
Confidence            555544      14555555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.17  E-value=1e-10  Score=126.23  Aligned_cols=78  Identities=27%  Similarity=0.328  Sum_probs=60.4

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|.|..  +.+   ...+++|+.|+|++|.+..++    .+.++++|+.|+|++|.+....+       +
T Consensus       198 l~~L~~L~l~~n~l~~--~~~---~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-------~  261 (466)
T 1o6v_A          198 LTNLESLIATNNQISD--ITP---LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP-------L  261 (466)
T ss_dssp             CTTCSEEECCSSCCCC--CGG---GGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG-------G
T ss_pred             CCCCCEEEecCCcccc--ccc---ccccCCCCEEECCCCCcccch----hhhcCCCCCEEECCCCccccchh-------h
Confidence            4678899999999887  333   456888999999999888874    57788888889998888876541       5


Q ss_pred             hcCCcccccccccc
Q 007072          233 QGCPKLEIYNSNFT  246 (619)
Q Consensus       233 ~~lP~LeiLn~~~T  246 (619)
                      ..+++|+.|+++..
T Consensus       262 ~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          262 SGLTKLTELKLGAN  275 (466)
T ss_dssp             TTCTTCSEEECCSS
T ss_pred             hcCCCCCEEECCCC
Confidence            67888888887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.16  E-value=2.9e-11  Score=116.36  Aligned_cols=120  Identities=24%  Similarity=0.286  Sum_probs=98.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|.|..   +| ..+..+++|+.|+|++|.|+.++  ...+.++++|+.|+|++|.+....++        
T Consensus        31 ~~l~~L~L~~n~i~~---ip-~~~~~l~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~--------   96 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL---VP-KELSNYKHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNRLRCIPPR--------   96 (193)
T ss_dssp             TTCCEEECCSSCCCS---CC-GGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTT--------
T ss_pred             CCCCEEECCCCcCch---hH-HHhhcccCCCEEECCCCcCCEeC--HhHccCCCCCCEEECCCCccCEeCHH--------
Confidence            468899999999987   66 56789999999999999999987  46789999999999999998876522        


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                                                            ....+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|
T Consensus        97 --------------------------------------~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N  136 (193)
T 2wfh_A           97 --------------------------------------TFDGLKSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGAN  136 (193)
T ss_dssp             --------------------------------------TTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECCSS
T ss_pred             --------------------------------------HhCCCCCCCEEECCCCCCCeeChhhhh--cCccccEEEeCCC
Confidence                                                  112477899999999999999999897  8999999999999


Q ss_pred             CCC-ccchHHHHHHH
Q 007072          314 PLE-QNSVRELLEVL  327 (619)
Q Consensus       314 ~i~-~i~~~~l~~~l  327 (619)
                      ++. +-....+..++
T Consensus       137 ~~~C~c~l~~l~~~~  151 (193)
T 2wfh_A          137 PLYCDCNMQWLSDWV  151 (193)
T ss_dssp             CEECSGGGHHHHHHH
T ss_pred             CeecCCcCHHHHHHH
Confidence            983 33333344443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.15  E-value=9.2e-12  Score=130.83  Aligned_cols=192  Identities=19%  Similarity=0.208  Sum_probs=131.4

Q ss_pred             CCceeeeecccCCCCcccccccccc---CCC---------CCccEeecCCCccc--chhhHHHHHhcccccceeecCCCc
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLS---SKF---------PDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNP  218 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~---~~~---------p~L~~L~Ls~NkL~--~~~~v~~~l~~L~~Lk~L~Ls~Np  218 (619)
                      ...+++|+|++|+|...  .+..+.   ..+         ++|+.|+|++|.|.  .++.....+.++++|+.|+|++|.
T Consensus       121 ~~~L~~L~L~~n~l~~~--~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  198 (386)
T 2ca6_A          121 HTPLEHLYLHNNGLGPQ--AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG  198 (386)
T ss_dssp             CTTCCEEECCSSCCHHH--HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             CCCCCEEECcCCCCCHH--HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence            47899999999999761  111111   223         99999999999996  555555789999999999999999


Q ss_pred             ccccccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc----
Q 007072          219 VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN----  294 (619)
Q Consensus       219 i~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~----  294 (619)
                      +....-..+.+..+..+++|+.|+++...-. ..+..            .+......+.+|+.|+|++|.|.....    
T Consensus       199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~-~~g~~------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-HLGSS------------ALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSCCH-HHHHH------------HHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCHhHHHHHHHHHhhcCCCccEEECcCCCCC-cHHHH------------HHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            8743211233335678999999998754321 00000            000112246789999999999986522    


Q ss_pred             cccCCCCCCCCcccccCCCCCCccchHHHHHHH-hCCCCCccccccCCCCCCch--hHHHhhhcCccc
Q 007072          295 KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVL-KGFPCLQSLGVDIPGPLGES--AIEILESLPTLC  359 (619)
Q Consensus       295 ~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l-~~~~~L~sL~ld~p~~l~~~--~~~il~~lp~L~  359 (619)
                      ..+....+++|++|+|++|.|....+..++..+ .++++|+.|++..|..-+..  ...+...+|+++
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~  333 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG  333 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence            222112489999999999999886555566666 77999999999988653333  255556666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.14  E-value=4.4e-11  Score=114.56  Aligned_cols=110  Identities=25%  Similarity=0.368  Sum_probs=93.8

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .++.|++++|.|..  +.+...+..+++|+.|+|++|+|+.+.  ...+.++++|+.|+|++|.+....+.         
T Consensus        30 ~l~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~---------   96 (192)
T 1w8a_A           30 HTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQLGENKIKEISNK---------   96 (192)
T ss_dssp             TCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSCCCCEECSS---------
T ss_pred             CCCEEECCCCcCCc--cCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEEECCCCcCCccCHH---------
Confidence            78899999999998  333356889999999999999999885  46789999999999999998766521         


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072          235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP  314 (619)
Q Consensus       235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~  314 (619)
                                                           ....+.+|+.|+|++|.|..+++..|.  .+++|++|+|++|+
T Consensus        97 -------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           97 -------------------------------------MFLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNP  137 (192)
T ss_dssp             -------------------------------------SSTTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTCC
T ss_pred             -------------------------------------HhcCCCCCCEEECCCCcCCeeCHHHhh--cCCCCCEEEeCCCC
Confidence                                                 112377899999999999999888887  89999999999999


Q ss_pred             CC
Q 007072          315 LE  316 (619)
Q Consensus       315 i~  316 (619)
                      +.
T Consensus       138 l~  139 (192)
T 1w8a_A          138 FN  139 (192)
T ss_dssp             BC
T ss_pred             cc
Confidence            85

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=6.3e-11  Score=111.17  Aligned_cols=111  Identities=23%  Similarity=0.337  Sum_probs=95.1

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|++++|+|..   ++...+..+++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+.        
T Consensus        28 ~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~--------   94 (177)
T 2o6r_A           28 SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYLHENKLQSLPNG--------   94 (177)
T ss_dssp             TTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTT--------
T ss_pred             CCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeC--hhHccCCCccCEEECCCCCccccCHH--------
Confidence            578999999999998   77777889999999999999999886  45678999999999999997755421        


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                                                            ....+.+|+.|+|++|.|..+|...|.  .+++|++|++++|
T Consensus        95 --------------------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N  134 (177)
T 2o6r_A           95 --------------------------------------VFDKLTQLKELALDTNQLKSVPDGIFD--RLTSLQKIWLHTN  134 (177)
T ss_dssp             --------------------------------------TTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSS
T ss_pred             --------------------------------------HhhCCcccCEEECcCCcceEeCHHHhc--CCcccCEEEecCC
Confidence                                                  012367899999999999999998887  8999999999999


Q ss_pred             CCCc
Q 007072          314 PLEQ  317 (619)
Q Consensus       314 ~i~~  317 (619)
                      ++..
T Consensus       135 ~~~~  138 (177)
T 2o6r_A          135 PWDC  138 (177)
T ss_dssp             CBCC
T ss_pred             Ceec
Confidence            9864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.13  E-value=2.1e-11  Score=111.15  Aligned_cols=131  Identities=23%  Similarity=0.274  Sum_probs=100.8

Q ss_pred             CCCCccEeecCCCccc--chhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKLE--TVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGF  256 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~--~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~f  256 (619)
                      ..++|+.|+|++|.|.  .++   ..+.++++|+.|+|++|.+....                                 
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~---------------------------------   58 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTSIA---------------------------------   58 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCCCT---------------------------------
T ss_pred             CCccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCCch---------------------------------
Confidence            3478999999999988  555   35688999999999999866441                                 


Q ss_pred             cccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccc
Q 007072          257 CGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL  336 (619)
Q Consensus       257 c~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL  336 (619)
                                     ....+.+|+.|+|++|.|....+..+.  .+++|+.|++++|.|..++.   ...+.++++|+.|
T Consensus        59 ---------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L  118 (149)
T 2je0_A           59 ---------------NLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSL  118 (149)
T ss_dssp             ---------------TCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEE
T ss_pred             ---------------hhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEE
Confidence                           011367899999999999985455554  69999999999999987641   3568999999999


Q ss_pred             cccCCCCCCchh--HHHhhhcCccccccCcc
Q 007072          337 GVDIPGPLGESA--IEILESLPTLCTLNGVT  365 (619)
Q Consensus       337 ~ld~p~~l~~~~--~~il~~lp~L~~LNg~~  365 (619)
                      ++..|..-+...  ...+..+|+|+.|+..+
T Consensus       119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999885422222  36789999999987653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.13  E-value=9.8e-12  Score=132.47  Aligned_cols=173  Identities=17%  Similarity=0.183  Sum_probs=101.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCC----CccEeecCCCcccchh--hHHHHHhcccccceeecCCCcccccccchh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFP----DLQALSLCGNKLETVE--IIVQEVTKLKNLRALWLNNNPVLKKCDHCM  227 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p----~L~~L~Ls~NkL~~~~--~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~  227 (619)
                      ..++.|+|++|.|.+  ..+..++..++    +|+.|+|++|.|....  .+...+.++++|+.|+|++|++.......+
T Consensus        56 ~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  133 (461)
T 1z7x_W           56 PALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  133 (461)
T ss_dssp             TTCCEEECTTCCCHH--HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             CCcCEEeCCCCcCCh--HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence            568888888888876  22223333444    6888888888887643  445678888888888888888765443333


Q ss_pred             hhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccC---CCCCCC
Q 007072          228 EDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS---PAEMPS  304 (619)
Q Consensus       228 ~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~---~~~L~~  304 (619)
                      ...+....++|+.|+++.++-.....             ..+......+.+|+.|+|++|.|.......+.   ..++++
T Consensus       134 ~~~l~~~~~~L~~L~L~~n~l~~~~~-------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~  200 (461)
T 1z7x_W          134 CEGLLDPQCRLEKLQLEYCSLSAASC-------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ  200 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGH-------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhcCCCcceEEECCCCCCCHHHH-------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC
Confidence            33444456678887776543221000             00000011245666777777766543322211   002456


Q ss_pred             CcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       305 L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      |++|++++|.+.+.....+...+.++++|++|++..+
T Consensus       201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence            6777777776666555555666666677777666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.13  E-value=7.9e-11  Score=128.03  Aligned_cols=144  Identities=18%  Similarity=0.215  Sum_probs=114.5

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      +.|++++|+|..   +|..+.   ++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+....+     ..+..++
T Consensus         3 ~~l~ls~n~l~~---ip~~~~---~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~   69 (520)
T 2z7x_B            3 FLVDRSKNGLIH---VPKDLS---QKTTILNISQNYISELW--TSDILSLSKLRILIISHNRIQYLDI-----SVFKFNQ   69 (520)
T ss_dssp             CEEECTTSCCSS---CCCSCC---TTCSEEECCSSCCCCCC--HHHHTTCTTCCEEECCSSCCCEEEG-----GGGTTCT
T ss_pred             ceEecCCCCccc---cccccc---ccccEEECCCCcccccC--hhhccccccccEEecCCCccCCcCh-----HHhhccc
Confidence            578999999998   776655   89999999999999876  5689999999999999999887653     3468899


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i  315 (619)
                      +|+.|+++...-.              ..|.    .  .+.+|+.|+|++|.|..++. ..|.  ++++|++|++++|.|
T Consensus        70 ~L~~L~Ls~N~l~--------------~lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           70 ELEYLDLSHNKLV--------------KISC----H--PTVNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHL  127 (520)
T ss_dssp             TCCEEECCSSCCC--------------EEEC----C--CCCCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSC
T ss_pred             CCCEEecCCCcee--------------ecCc----c--ccCCccEEeccCCccccccchhhhc--cCCcceEEEecCccc
Confidence            9999999754321              1111    1  47899999999999998643 5565  899999999999999


Q ss_pred             CccchHHHHHHHhCCCCC--ccccccCCC
Q 007072          316 EQNSVRELLEVLKGFPCL--QSLGVDIPG  342 (619)
Q Consensus       316 ~~i~~~~l~~~l~~~~~L--~sL~ld~p~  342 (619)
                      ....       +.++++|  +.|++..+.
T Consensus       128 ~~~~-------~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B          128 EKSS-------VLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CGGG-------GGGGTTSCEEEEEEEECT
T ss_pred             chhh-------ccccccceeeEEEeeccc
Confidence            7643       5667777  888887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.13  E-value=1.7e-11  Score=127.93  Aligned_cols=172  Identities=20%  Similarity=0.132  Sum_probs=105.1

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcc-cchhhHHHHHhcccccce-eecCCCcccccccchhhhHH
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKL-ETVEIIVQEVTKLKNLRA-LWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL-~~~~~v~~~l~~L~~Lk~-L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      ..++.|+|++|+|..   +|.+.+.++++|+.|+|++|+| +.++  ..++.++++|+. +.+++|.+....+     ..
T Consensus        30 ~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~--~~~f~~L~~l~~~l~~~~N~l~~l~~-----~~   99 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRIEKANNLLYINP-----EA   99 (350)
T ss_dssp             TTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEEC--TTSBCSCTTCCEEEEEEETTCCEECT-----TS
T ss_pred             CCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccC--hhHhhcchhhhhhhcccCCcccccCc-----hh
Confidence            357788899999888   7888888899999999999986 4444  346778887764 6677788877653     34


Q ss_pred             hhcCCccccccccccccccccccccccccc-------CCCCCCcccc-CCCcC-CcccccccCccccccCcccccCCCCC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVY-------DKDNPSSLCL-RDRPL-QSVTSLDLSNRCIHNLVNKAFSPAEM  302 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~-------~~~~p~~l~~-~~~~L-~~L~~LdLS~N~I~~Lp~~~f~~~~L  302 (619)
                      +..+++|+.|+++.++-..--...|+...-       +...-..+.. .+..+ ..++.|+|++|.|..+|...|.   .
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~---~  176 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN---G  176 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST---T
T ss_pred             hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc---c
Confidence            677888888877654332111111111000       0000011111 11122 3466777777777777777763   4


Q ss_pred             CCCcccccC-CCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          303 PSLSHLNIR-GNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       303 ~~L~~LnLs-~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+|+.|+++ +|.+..++    ...|.++++|+.|++..|.
T Consensus       177 ~~L~~l~l~~~n~l~~i~----~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             EEEEEEECTTCTTCCCCC----TTTTTTEECCSEEECTTSC
T ss_pred             cchhHHhhccCCcccCCC----HHHhccCcccchhhcCCCC
Confidence            567777775 35666666    3456667777777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.12  E-value=1.5e-11  Score=128.18  Aligned_cols=157  Identities=18%  Similarity=0.225  Sum_probs=102.9

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccE-eecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQA-LSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA  230 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~-L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~  230 (619)
                      |...+++|+|++|.|..  .++.+.+.+++++.. +.+.+|+|..++  ...+.++++|+.|+|++|.+....+..    
T Consensus        52 ~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~--~~~f~~l~~L~~L~l~~n~l~~~~~~~----  123 (350)
T 4ay9_X           52 GFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYLLISNTGIKHLPDVH----  123 (350)
T ss_dssp             TCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETTCCEEC--TTSBCCCTTCCEEEEEEECCSSCCCCT----
T ss_pred             CCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCcccccC--chhhhhccccccccccccccccCCchh----
Confidence            45678899999999866  577788888888775 577788998886  457888999999999999887665321    


Q ss_pred             HhhcCCcccccccccccccccccc-ccccc-----cc--CCCCCCccccCCCcCCcccccccC-ccccccCcccccCCCC
Q 007072          231 ILQGCPKLEIYNSNFTINFGEWAL-GFCGE-----VY--DKDNPSSLCLRDRPLQSVTSLDLS-NRCIHNLVNKAFSPAE  301 (619)
Q Consensus       231 il~~lP~LeiLn~~~T~n~~~~~l-~fc~~-----~~--~~~~p~~l~~~~~~L~~L~~LdLS-~N~I~~Lp~~~f~~~~  301 (619)
                       +....++..+++....+.+...- .|.+-     ..  ..+.-..+........+|+.|+|+ +|.+..+|...|.  .
T Consensus       124 -~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~--~  200 (350)
T 4ay9_X          124 -KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH--G  200 (350)
T ss_dssp             -TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTT--T
T ss_pred             -hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhc--c
Confidence             22233343343321111111000 00000     00  001112222222245678999997 5889999999998  9


Q ss_pred             CCCCcccccCCCCCCccc
Q 007072          302 MPSLSHLNIRGNPLEQNS  319 (619)
Q Consensus       302 L~~L~~LnLs~N~i~~i~  319 (619)
                      +++|+.|+|++|.|..++
T Consensus       201 l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          201 ASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             EECCSEEECTTSCCCCCC
T ss_pred             CcccchhhcCCCCcCccC
Confidence            999999999999999988

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.12  E-value=2.7e-11  Score=129.08  Aligned_cols=68  Identities=15%  Similarity=0.093  Sum_probs=49.6

Q ss_pred             CCcccccccCccccccCcccccC---CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          276 LQSVTSLDLSNRCIHNLVNKAFS---PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       276 L~~L~~LdLS~N~I~~Lp~~~f~---~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +.+|+.|||++|.|.......+.   ....++|++|+|++|.|.+.....+...+..+++|+.|++..|..
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence            56888888888888765432221   013678889999999887766666777788889999998888753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=1.1e-10  Score=109.92  Aligned_cols=120  Identities=20%  Similarity=0.258  Sum_probs=91.8

Q ss_pred             eeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072          156 VKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC  235 (619)
Q Consensus       156 l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l  235 (619)
                      .+.|++++|+|..   +|..+   .++|+.|+|++|+|+.++  ...+.++++|+.|+|++|.+....++          
T Consensus        11 ~~~l~~s~n~l~~---ip~~~---~~~l~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~l~~~----------   72 (170)
T 3g39_A           11 GTTVDCSGKSLAS---VPTGI---PTTTQVLYLYDNQITKLE--PGVFDRLTQLTRLDLDNNQLTVLPAG----------   72 (170)
T ss_dssp             TTEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTT----------
T ss_pred             CCEEEeCCCCcCc---cCccC---CCCCcEEEcCCCcCCccC--hhhhcCcccCCEEECCCCCcCccChh----------
Confidence            3568899999988   66554   388999999999999885  45788999999999999987765421          


Q ss_pred             CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072          236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i  315 (619)
                                                          .+..+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|++
T Consensus        73 ------------------------------------~f~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           73 ------------------------------------VFDKLTQLTQLSLNDNQLKSIPRGAFD--NLKSLTHIWLLNNPW  114 (170)
T ss_dssp             ------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCB
T ss_pred             ------------------------------------hccCCCCCCEEECCCCccCEeCHHHhc--CCCCCCEEEeCCCCC
Confidence                                                012477899999999999999998887  899999999999998


Q ss_pred             Cccc--hHHHHHHHhCCC
Q 007072          316 EQNS--VRELLEVLKGFP  331 (619)
Q Consensus       316 ~~i~--~~~l~~~l~~~~  331 (619)
                      .-.-  ...+..++...+
T Consensus       115 ~c~c~~l~~l~~~l~~~~  132 (170)
T 3g39_A          115 DCACSDILYLSRWISQHP  132 (170)
T ss_dssp             CTTBGGGHHHHHHHHHCG
T ss_pred             CCCchhHHHHHHHHHhCc
Confidence            5432  333444444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.11  E-value=3.6e-11  Score=139.80  Aligned_cols=142  Identities=23%  Similarity=0.172  Sum_probs=109.2

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..++.|+|++|.|..   ++...+.++++|+.|+|++| .+..++  ...+.+|++|+.|+|++|.+....++     .+
T Consensus        24 ~~l~~LdLs~N~i~~---i~~~~~~~l~~L~~LdLs~n~~~~~i~--~~~f~~L~~L~~L~Ls~N~l~~~~p~-----~~   93 (844)
T 3j0a_A           24 NTTERLLLSFNYIRT---VTASSFPFLEQLQLLELGSQYTPLTID--KEAFRNLPNLRILDLGSSKIYFLHPD-----AF   93 (844)
T ss_dssp             TTCCEEEEESCCCCE---ECSSSCSSCCSCSEEEECTTCCCCEEC--TTTTSSCTTCCEEECTTCCCCEECTT-----SS
T ss_pred             CCcCEEECCCCcCCc---cChhHCcccccCeEEeCCCCCCccccC--HHHhcCCCCCCEEECCCCcCcccCHh-----Hc
Confidence            578899999999998   66677889999999999999 555553  35789999999999999999877533     46


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs  311 (619)
                      ..+++|+.|+++.+...+             ..|..  .....+.+|+.||||+|.+..++. ..|+  ++++|+.|+|+
T Consensus        94 ~~l~~L~~L~Ls~n~l~~-------------~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls  156 (844)
T 3j0a_A           94 QGLFHLFELRLYFCGLSD-------------AVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFS  156 (844)
T ss_dssp             CSCSSCCCEECTTCCCSS-------------CCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEE
T ss_pred             cCCcccCEeeCcCCCCCc-------------ccccC--ccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECC
Confidence            789999999987544321             01110  013358899999999999988765 5666  89999999999


Q ss_pred             CCCCCccchHH
Q 007072          312 GNPLEQNSVRE  322 (619)
Q Consensus       312 ~N~i~~i~~~~  322 (619)
                      +|.|..+....
T Consensus       157 ~N~i~~~~~~~  167 (844)
T 3j0a_A          157 SNQIFLVCEHE  167 (844)
T ss_dssp             SSCCCCCCSGG
T ss_pred             CCcCCeeCHHH
Confidence            99987765333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.11  E-value=5.3e-11  Score=138.35  Aligned_cols=178  Identities=20%  Similarity=0.191  Sum_probs=103.3

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccccc-------
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD-------  224 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~-------  224 (619)
                      +...++.|+|++|.|..   ++...+..+++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+.....       
T Consensus       312 ~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L  386 (844)
T 3j0a_A          312 GLDNLQVLNLSYNLLGE---LYSSNFYGLPKVAYIDLQKNHIAIIQ--DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI  386 (844)
T ss_dssp             TCSSCCEEEEESCCCSC---CCSCSCSSCTTCCEEECCSCCCCCCC--SSCSCSCCCCCEEEEETCCSCCCSSCCSCSEE
T ss_pred             CCCCCCEEECCCCCCCc---cCHHHhcCCCCCCEEECCCCCCCccC--hhhhcCCCCCCEEECCCCCCCcccCCCCcchh
Confidence            34566677777777665   44455556666666666666666554  2345566666666666666543210       


Q ss_pred             ------------c---------------hh-hhHHhhcCCcccccccccccccc---cc---------cccccccccCCC
Q 007072          225 ------------H---------------CM-EDAILQGCPKLEIYNSNFTINFG---EW---------ALGFCGEVYDKD  264 (619)
Q Consensus       225 ------------~---------------~~-~~~il~~lP~LeiLn~~~T~n~~---~~---------~l~fc~~~~~~~  264 (619)
                                  .               ++ ....+..+|+|+.|+++...-.+   ..         .|....+.+...
T Consensus       387 ~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  466 (844)
T 3j0a_A          387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA  466 (844)
T ss_dssp             EEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred             ccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence                        0               00 01224478888888776533221   00         001111111100


Q ss_pred             CCCccc-cCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          265 NPSSLC-LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       265 ~p~~l~-~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+.... .....+.+|+.|+|++|.|..+|+..|.  ++++|+.|+|++|.|..++...    +.  ++|+.|+++.|.
T Consensus       467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~----~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS--HLTALRGLSLNSNRLTVLSHND----LP--ANLEILDISRNQ  537 (844)
T ss_dssp             CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS--SCCSCSEEEEESCCCSSCCCCC----CC--SCCCEEEEEEEC
T ss_pred             cccccchhhhcCcccccEEECCCCcccccChhHcc--chhhhheeECCCCCCCccChhh----hh--ccccEEECCCCc
Confidence            001111 1234578899999999999999998887  8999999999999998877211    21  667777666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.09  E-value=2.3e-10  Score=124.44  Aligned_cols=171  Identities=18%  Similarity=0.131  Sum_probs=101.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|++++|+|..   +|  -...+++|+.|+|++|.|+.++     +.++++|+.|+|++|.+....        +.
T Consensus        42 ~~L~~L~Ls~n~l~~---~~--~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~--------~~  103 (457)
T 3bz5_A           42 ATLTSLDCHNSSITD---MT--GIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLD--------VT  103 (457)
T ss_dssp             TTCCEEECCSSCCCC---CT--TGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCCC--------CT
T ss_pred             CCCCEEEccCCCccc---Ch--hhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCCCceee--------cC
Confidence            567888888888887   34  2467888888888888888864     677888888888888877653        56


Q ss_pred             cCCcccccccccccccccccccccccccC----CCCCCccccCCCcCCcccccccCcc-ccccCcccccCCCCCCCCccc
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYD----KDNPSSLCLRDRPLQSVTSLDLSNR-CIHNLVNKAFSPAEMPSLSHL  308 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~----~~~p~~l~~~~~~L~~L~~LdLS~N-~I~~Lp~~~f~~~~L~~L~~L  308 (619)
                      .+++|+.|+++...-.+ +.++.+...-.    .+.-..+  ....+.+|+.|+|++| .+..+   .+.  .+++|+.|
T Consensus       104 ~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~--~l~~L~~L  175 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL---DVT--PQTQLTTL  175 (457)
T ss_dssp             TCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC---CCT--TCTTCCEE
T ss_pred             CCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc---ccc--cCCcCCEE
Confidence            77888888776543221 11000000000    0000000  1223445555555555 33333   122  67777777


Q ss_pred             ccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       309 nLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      ++++|.|..++       +.++++|+.|++..+..-+.    -+..+++|+.|
T Consensus       176 ~ls~n~l~~l~-------l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L  217 (457)
T 3bz5_A          176 DCSFNKITELD-------VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFL  217 (457)
T ss_dssp             ECCSSCCCCCC-------CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEE
T ss_pred             ECCCCccceec-------cccCCCCCEEECcCCcCCee----ccccCCCCCEE
Confidence            77777777755       56778888888776653222    13455666555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.09  E-value=9.2e-13  Score=126.40  Aligned_cols=155  Identities=21%  Similarity=0.265  Sum_probs=100.0

Q ss_pred             CceeeeecccCCCCcc--cc--ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072          154 GTVKWLELEDADIGDD--ML--LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED  229 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~--~l--i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~  229 (619)
                      ..+..++++++.+...  .+  +|. .+..+++|+.|+|++|.|+.++    .+.++++|+.|+|++|.+.....     
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~----~~~~l~~L~~L~l~~n~l~~l~~-----   87 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIKKIEN-----   87 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC----CHHHHTTCCEEEEEEEEECSCSS-----
T ss_pred             ccccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc----ccccCCCCCEEECCCCCcccccc-----
Confidence            3455555666665541  00  111 4467888999999999888865    67788889999998888764321     


Q ss_pred             HHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccc
Q 007072          230 AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLN  309 (619)
Q Consensus       230 ~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~Ln  309 (619)
                       ....                                         +.+|+.|+|++|.|..+|.  +.  .+++|+.|+
T Consensus        88 -~~~~-----------------------------------------~~~L~~L~L~~N~l~~l~~--~~--~l~~L~~L~  121 (198)
T 1ds9_A           88 -LDAV-----------------------------------------ADTLEELWISYNQIASLSG--IE--KLVNLRVLY  121 (198)
T ss_dssp             -HHHH-----------------------------------------HHHCSEEEEEEEECCCHHH--HH--HHHHSSEEE
T ss_pred             -hhhc-----------------------------------------CCcCCEEECcCCcCCcCCc--cc--cCCCCCEEE
Confidence             1122                                         3456667777777776652  33  567777777


Q ss_pred             cCCCCCCccchHHHHHHHhCCCCCccccccCCCCC---------CchhHHHhhhcCccccccCccch
Q 007072          310 IRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPL---------GESAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       310 Ls~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l---------~~~~~~il~~lp~L~~LNg~~~s  367 (619)
                      +++|.|.+++.   ...+.++++|+.|++..|..-         ..+...++..+|+|+.|+|..++
T Consensus       122 l~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~  185 (198)
T 1ds9_A          122 MSNNKITNWGE---IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             ESEEECCCHHH---HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred             CCCCcCCchhH---HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence            77777766541   134667777777777665421         11225668889999999988886

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.07  E-value=1.8e-10  Score=129.95  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             cccccccCccccccCccccc-CCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC
Q 007072          278 SVTSLDLSNRCIHNLVNKAF-SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI  340 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f-~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~  340 (619)
                      +|+.|+|++|.|..+|...+ .  .+++|+.|+|++|.|..++     ..+.++++|+.|++..
T Consensus       489 ~L~~L~Ls~N~l~~lp~~~~~~--~l~~L~~L~Ls~N~l~~ip-----~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          489 LLTSIDLRFNKLTKLSDDFRAT--TLPYLVGIDLSYNSFSKFP-----TQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             GCCEEECCSSCCCBCCGGGSTT--TCTTCCEEECCSSCCSSCC-----CGGGGCSSCCEEECCS
T ss_pred             CccEEECcCCcCCccChhhhhc--cCCCcCEEECCCCCCCCcC-----hhhhcCCCCCEEECCC
Confidence            77778888888877776665 3  5777888888888777654     3456677777777754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=8.9e-11  Score=131.54  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=60.3

Q ss_pred             CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072          182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY  261 (619)
Q Consensus       182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~  261 (619)
                      .|+.|+|++|+|+.++   . +.+|++|+.|+|++|.+.....      .+..+++|+.|+++...-.+           
T Consensus       442 ~L~~L~Ls~n~l~~lp---~-~~~l~~L~~L~Ls~N~l~~lp~------~~~~l~~L~~L~Ls~N~l~~-----------  500 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC---H-LEQLLLVTHLDLSHNRLRALPP------ALAALRCLEVLQASDNALEN-----------  500 (567)
T ss_dssp             TCSEEECTTSCCSSCC---C-GGGGTTCCEEECCSSCCCCCCG------GGGGCTTCCEEECCSSCCCC-----------
T ss_pred             CceEEEecCCCCCCCc---C-ccccccCcEeecCcccccccch------hhhcCCCCCEEECCCCCCCC-----------
Confidence            4777888888777765   2 6777788888888887764321      23444444444443221110           


Q ss_pred             CCCCCCccccCCCcCCcccccccCccccccCc-ccccCCCCCCCCcccccCCCCCCccc
Q 007072          262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-NKAFSPAEMPSLSHLNIRGNPLEQNS  319 (619)
Q Consensus       262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~L~~L~~LnLs~N~i~~i~  319 (619)
                         .|     ....+.+|+.|+|++|.|..++ +..|.  ++++|+.|+|++|+|...+
T Consensus       501 ---lp-----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~--~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          501 ---VD-----GVANLPRLQELLLCNNRLQQSAAIQPLV--SCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             ---CG-----GGTTCSSCCEEECCSSCCCSSSTTGGGG--GCTTCCEEECTTSGGGGSS
T ss_pred             ---Cc-----ccCCCCCCcEEECCCCCCCCCCCcHHHh--cCCCCCEEEecCCcCCCCc
Confidence               01     1123556666666666666663 33333  5666666666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.06  E-value=1.7e-10  Score=109.43  Aligned_cols=106  Identities=23%  Similarity=0.361  Sum_probs=80.8

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      ..+++++++|..   +|..+.   ++|+.|+|++|+|..++  ...+.++++|+.|+|++|.+....++           
T Consensus        15 ~~l~~~~n~l~~---iP~~~~---~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~i~~~-----------   75 (174)
T 2r9u_A           15 TLVNCQNIRLAS---VPAGIP---TDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLTAIPTG-----------   75 (174)
T ss_dssp             SEEECCSSCCSS---CCSCCC---TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTT-----------
T ss_pred             cEEEeCCCCCCc---cCCCcC---CCCcEEEeCCCCccccC--HHHhcCCcCCCEEECCCCCCCccChh-----------
Confidence            467888888877   665543   78888888888888875  35678888888888888887655411           


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                         .+..+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|++.
T Consensus        76 -----------------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           76 -----------------------------------VFDKLTQLTQLDLNDNHLKSIPRGAFD--NLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             -----------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCBC
T ss_pred             -----------------------------------HhCCcchhhEEECCCCccceeCHHHhc--cccCCCEEEeCCCCcc
Confidence                                               012367888888999999988888776  7889999999999886


Q ss_pred             cc
Q 007072          317 QN  318 (619)
Q Consensus       317 ~i  318 (619)
                      -.
T Consensus       119 c~  120 (174)
T 2r9u_A          119 CE  120 (174)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=7.9e-11  Score=125.19  Aligned_cols=186  Identities=16%  Similarity=0.128  Sum_probs=128.7

Q ss_pred             CceeeeecccCCCCccc--cccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          154 GTVKWLELEDADIGDDM--LLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~--li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      ..++.|+|++|.|....  .+...+....++|+.|+|++|.|.+.. +......+++|+.|+|++|.+.......+...+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            56889999999998721  122222345589999999999997754 334556688999999999998765433333333


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc----cccCCCCCCCCcc
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN----KAFSPAEMPSLSH  307 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~----~~f~~~~L~~L~~  307 (619)
                      ....++|+.|+++...-. ..+...            +........+|+.|||++|.|.....    ..+.  ..++|+.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~-~~~~~~------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--~~~~L~~  215 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLT-AAGVAV------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD--RNRQLQE  215 (372)
T ss_dssp             HSTTCCCCEEECCSSCCH-HHHHHH------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG--GCSCCCE
T ss_pred             HhcCCccceeeCCCCCCC-hHHHHH------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh--cCCCcCe
Confidence            356899999998754321 111000            00001135689999999999986432    2233  5789999


Q ss_pred             cccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcC
Q 007072          308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLP  356 (619)
Q Consensus       308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp  356 (619)
                      |+|++|.|.+.....+...+..+++|++|+++.|. ++......+..+.
T Consensus       216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~  263 (372)
T 3un9_A          216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLG  263 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHh
Confidence            99999999988877788889999999999999886 4444444554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.06  E-value=1.8e-10  Score=130.02  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             cCCcccccccCccccccCcccccCCCCCCCCcccccCC------CCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG------NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~------N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      .+.+|+.|+|++|.|..+|..++   .+++|+.|+|++      |.+...-    +..+.++++|+.|++..|..
T Consensus       511 ~l~~L~~L~Ls~N~l~~ip~~~~---~l~~L~~L~Ls~N~~ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKFPTQPL---NSSTLKGFGIRNQRDAQGNRTLREW----PEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             TCTTCCEEECCSSCCSSCCCGGG---GCSSCCEEECCSCBCTTCCBCCCCC----CTTGGGCSSCCEEECCSSCC
T ss_pred             cCCCcCEEECCCCCCCCcChhhh---cCCCCCEEECCCCcccccCcccccC----hHHHhcCCCCCEEECCCCcC
Confidence            57899999999999999888776   699999999965      4444322    35678899999999988864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.02  E-value=4.8e-10  Score=127.14  Aligned_cols=52  Identities=23%  Similarity=0.140  Sum_probs=30.2

Q ss_pred             CcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+|+.|+|++|.|..+|.      .+++|+.|+|++|.|..++.        .+++|+.|++..|.
T Consensus       221 ~~L~~L~Ls~N~L~~lp~------~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSC
T ss_pred             CCCCEEEccCCccCcCCC------CCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCC
Confidence            456666666666666551      45566666666666665551        45566666665553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.01  E-value=2.2e-10  Score=131.73  Aligned_cols=157  Identities=17%  Similarity=0.131  Sum_probs=98.7

Q ss_pred             ceeeeecccCCCCccccccccccC-CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSS-KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~-~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      .++.|++++|.+..  .++..+.. .+++|+.|+|++|.+....  ...+.++++|+.|+|++|.+....+     ..+.
T Consensus       369 ~L~~L~Ls~N~l~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p-----~~l~  439 (768)
T 3rgz_A          369 SLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLSGTIP-----SSLG  439 (768)
T ss_dssp             TCSEEECCSSEEEE--ECCTTTTCSTTCCCCEEECCSSEEEEEC--CGGGGGCTTCCEEECCSSEEESCCC-----GGGG
T ss_pred             CCcEEEccCCCcCC--CcChhhhhcccCCccEEECCCCcccccc--CHHHhcCCCCCEEECcCCcccCccc-----HHHh
Confidence            67888888888766  33433332 3678888888888877432  3467788888888888888775443     2356


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++.....+             ..|..    ...+.+|+.|+|++|.+....+..|.  ++++|+.|+|++|
T Consensus       440 ~l~~L~~L~L~~n~l~~-------------~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N  500 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEG-------------EIPQE----LMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNN  500 (768)
T ss_dssp             GCTTCCEEECCSSCCCS-------------CCCGG----GGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCcccC-------------cCCHH----HcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCC
Confidence            77888888776433221             11211    11356677777777777644444444  5677777777777


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      .+....    +..+.++++|+.|++..|..
T Consensus       501 ~l~~~~----p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          501 RLTGEI----PKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             CCCSCC----CGGGGGCTTCCEEECCSSCC
T ss_pred             ccCCcC----ChHHhcCCCCCEEECCCCcc
Confidence            766332    34566677777777766643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=3.4e-10  Score=133.06  Aligned_cols=79  Identities=14%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             CceeeeecccCCCCccccccc-cccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..++.|+|++|+|..   +|. +...++++|+.|+|++|.|..++    .+.++++|+.|+|++|.+.....      .+
T Consensus       548 ~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~~L~~L~~L~Ls~N~l~~lp~------~l  614 (876)
T 4ecn_A          548 PKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCVHNKVRHLE----AFGTNVKLTDLKLDYNQIEEIPE------DF  614 (876)
T ss_dssp             TTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECTTSCCCBCC----CCCTTSEESEEECCSSCCSCCCT------TS
T ss_pred             CCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECCCCCcccch----hhcCCCcceEEECcCCccccchH------HH
Confidence            466777777777765   443 34556777777777777776554    56667777777777777663321      14


Q ss_pred             hcCCc-cccccccc
Q 007072          233 QGCPK-LEIYNSNF  245 (619)
Q Consensus       233 ~~lP~-LeiLn~~~  245 (619)
                      ..+++ |+.|+++.
T Consensus       615 ~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          615 CAFTDQVEGLGFSH  628 (876)
T ss_dssp             CEECTTCCEEECCS
T ss_pred             hhccccCCEEECcC
Confidence            55666 66666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.95  E-value=6.7e-10  Score=124.46  Aligned_cols=155  Identities=20%  Similarity=0.277  Sum_probs=110.1

Q ss_pred             ccCCCCCccEee-cCCCcccchhhHH---HHHhc--ccccceeecCCCcccccccchhhhHHhhcCCccccccccccccc
Q 007072          176 LSSKFPDLQALS-LCGNKLETVEIIV---QEVTK--LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF  249 (619)
Q Consensus       176 l~~~~p~L~~L~-Ls~NkL~~~~~v~---~~l~~--L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~  249 (619)
                      ....+++|+.|+ ++.|.+.+++...   ..+..  ...|+.|+|++|.+....      . +..|++|+.|+++...-.
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp------~-~~~l~~L~~L~Ls~N~l~  476 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC------H-LEQLLLVTHLDLSHNRLR  476 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC------C-GGGGTTCCEEECCSSCCC
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCc------C-ccccccCcEeecCccccc
Confidence            334566677776 6666555444211   11222  236999999999998753      2 678999999998753321


Q ss_pred             ccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhC
Q 007072          250 GEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG  329 (619)
Q Consensus       250 ~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~  329 (619)
                                    ..|..+    ..+.+|+.|+|++|.|..+|  .|.  ++++|+.|+|++|.|..+..   +..+.+
T Consensus       477 --------------~lp~~~----~~l~~L~~L~Ls~N~l~~lp--~l~--~l~~L~~L~Ls~N~l~~~~~---p~~l~~  531 (567)
T 1dce_A          477 --------------ALPPAL----AALRCLEVLQASDNALENVD--GVA--NLPRLQELLLCNNRLQQSAA---IQPLVS  531 (567)
T ss_dssp             --------------CCCGGG----GGCTTCCEEECCSSCCCCCG--GGT--TCSSCCEEECCSSCCCSSST---TGGGGG
T ss_pred             --------------ccchhh----hcCCCCCEEECCCCCCCCCc--ccC--CCCCCcEEECCCCCCCCCCC---cHHHhc
Confidence                          233322    35889999999999999998  454  89999999999999988731   246889


Q ss_pred             CCCCccccccCCCCCCc--hhHHHhhhcCcccccc
Q 007072          330 FPCLQSLGVDIPGPLGE--SAIEILESLPTLCTLN  362 (619)
Q Consensus       330 ~~~L~sL~ld~p~~l~~--~~~~il~~lp~L~~LN  362 (619)
                      +++|+.|++..|..-+.  ....+...+|+|+.||
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            99999999998864322  2256777899998875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.95  E-value=1.1e-09  Score=123.02  Aligned_cols=148  Identities=18%  Similarity=0.137  Sum_probs=83.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|.|..   +|    ..+++|+.|+|++|+|+.++.    +.+  +|+.|+|++|.+....+         
T Consensus        80 ~~L~~L~Ls~N~l~~---ip----~~l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L~Ls~N~l~~lp~---------  137 (571)
T 3cvr_A           80 PQITVLEITQNALIS---LP----ELPASLEYLDACDNRLSTLPE----LPA--SLKHLDVDNNQLTMLPE---------  137 (571)
T ss_dssp             TTCSEEECCSSCCSC---CC----CCCTTCCEEECCSSCCSCCCC----CCT--TCCEEECCSSCCSCCCC---------
T ss_pred             CCCCEEECcCCCCcc---cc----cccCCCCEEEccCCCCCCcch----hhc--CCCEEECCCCcCCCCCC---------
Confidence            346777777777765   44    345777777777777776653    332  67777777777665331         


Q ss_pred             cCCccccccccccccccccc--------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWA--------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL  305 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~--------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L  305 (619)
                      .+++|+.|+++...-.+ +.        |....+.+. ..|.     .  ..+|+.|+|++|.|..+|.  |.  .  +|
T Consensus       138 ~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~-~lp~-----l--~~~L~~L~Ls~N~L~~lp~--~~--~--~L  202 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLT-FLPE-----L--PESLEALDVSTNLLESLPA--VP--V--RN  202 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC-----C--CTTCCEEECCSSCCSSCCC--CC-------
T ss_pred             cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCC-Ccch-----h--hCCCCEEECcCCCCCchhh--HH--H--hh
Confidence            45666666665432211 00        001111110 1111     0  1567777777777777776  32  1  44


Q ss_pred             -------cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          306 -------SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       306 -------~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                             +.|+|++|.|..++     ..+..+++|+.|++..|..
T Consensus       203 ~~~~~~L~~L~Ls~N~l~~lp-----~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRITHIP-----ENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -----CCEEEECCSSCCCCCC-----GGGGGSCTTEEEECCSSSC
T ss_pred             hcccccceEEecCCCcceecC-----HHHhcCCCCCEEEeeCCcC
Confidence                   77788888777766     2344578888888777753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=8e-10  Score=129.93  Aligned_cols=160  Identities=14%  Similarity=0.167  Sum_probs=112.7

Q ss_pred             ceeeeecccCCCCcccccccccc-----CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhh
Q 007072          155 TVKWLELEDADIGDDMLLSLNLS-----SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMED  229 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~-----~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~  229 (619)
                      .++.|+|++|.|..   .++.+.     ..+++|+.|+|++|.|..++  ...+.++++|+.|+|++|.+...... +..
T Consensus       645 ~L~~L~Ls~N~l~g---~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp--~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~~  718 (876)
T 4ecn_A          645 VMGSVDFSYNKIGS---EGRNISCSMDDYKGINASTVTLSYNEIQKFP--TELFATGSPISTIILSNNLMTSIPEN-SLK  718 (876)
T ss_dssp             CEEEEECCSSCTTT---TSSSCSSCTTTCCCCCEEEEECCSSCCCSCC--HHHHHTTCCCSEEECCSCCCSCCCTT-SSS
T ss_pred             CCCEEECcCCcCCC---ccccchhhhccccCCCcCEEEccCCcCCccC--HHHHccCCCCCEEECCCCcCCccChH-Hhc
Confidence            49999999999877   222222     24569999999999999876  56677899999999999999855422 111


Q ss_pred             H---HhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc
Q 007072          230 A---ILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS  306 (619)
Q Consensus       230 ~---il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~  306 (619)
                      .   .++.|++|+.|+++...-.              ..|..+.  ...+.+|+.|+|++|.|..+|..++   ++++|+
T Consensus       719 ~~~~~l~nl~~L~~L~Ls~N~L~--------------~lp~~l~--~~~l~~L~~L~Ls~N~L~~lp~~l~---~L~~L~  779 (876)
T 4ecn_A          719 PKDGNYKNTYLLTTIDLRFNKLT--------------SLSDDFR--ATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLK  779 (876)
T ss_dssp             CTTSCCTTGGGCCEEECCSSCCC--------------CCCGGGS--TTTCTTCCEEECCSSCCSSCCCGGG---GCTTCC
T ss_pred             cccccccccCCccEEECCCCCCc--------------cchHHhh--hccCCCcCEEEeCCCCCCccchhhh---cCCCCC
Confidence            1   1234458998888743221              1221111  1247889999999999999887766   689999


Q ss_pred             ccccCC------CCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          307 HLNIRG------NPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       307 ~LnLs~------N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      .|+|++      |.+...-    +..+.++++|+.|++..|..
T Consensus       780 ~L~Ls~N~~ls~N~l~~~i----p~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          780 AFGIRHQRDAEGNRILRQW----PTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             EEECCCCBCTTCCBCCCCC----CTTGGGCSSCCEEECCSSCC
T ss_pred             EEECCCCCCcccccccccC----hHHHhcCCCCCEEECCCCCC
Confidence            999977      4443322    45678899999999988764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.92  E-value=2.7e-09  Score=121.00  Aligned_cols=58  Identities=16%  Similarity=0.091  Sum_probs=51.1

Q ss_pred             cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      .+.+|+.|+|++|.|..+|.      .+++|+.|+|++|.|..++     ..+.++++|+.|++..|..
T Consensus       239 ~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~N~L~~lp-----~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          239 LPSELKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLTRLP-----ESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCCSCC-----GGGGGSCTTCEEECCSCCC
T ss_pred             CCCcCcEEECCCCCCCcCCc------ccccCcEEeCCCCCCCcCC-----HHHhhccccCEEEecCCCC
Confidence            46789999999999999986      5789999999999999776     3588999999999998874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.92  E-value=1.9e-09  Score=121.12  Aligned_cols=125  Identities=14%  Similarity=0.168  Sum_probs=76.2

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .+++|+|++|.|..   +|.    .+++|+.|+|++|+|+.++.      .+++|+.|+|++|.+.....  +     . 
T Consensus       121 ~L~~L~Ls~N~l~~---lp~----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~lp~--l-----~-  179 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM---LPE----LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTFLPE--L-----P-  179 (571)
T ss_dssp             TCCEEECCSSCCSC---CCC----CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC--C-----C-
T ss_pred             CCCEEECCCCcCCC---CCC----cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCCcch--h-----h-
Confidence            56666666666655   333    45666666666666666552      45666666666666655331  1     1 


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCcccc-CCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCL-RDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~-~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                       ++|+.|+++..+-.              ..|. +.. .......|+.|+|++|.|..+|..++   .+++|+.|+|++|
T Consensus       180 -~~L~~L~Ls~N~L~--------------~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~---~l~~L~~L~L~~N  240 (571)
T 3cvr_A          180 -ESLEALDVSTNLLE--------------SLPA-VPVRNHHSEETEIFFRCRENRITHIPENIL---SLDPTCTIILEDN  240 (571)
T ss_dssp             -TTCCEEECCSSCCS--------------SCCC-CC--------CCEEEECCSSCCCCCCGGGG---GSCTTEEEECCSS
T ss_pred             -CCCCEEECcCCCCC--------------chhh-HHHhhhcccccceEEecCCCcceecCHHHh---cCCCCCEEEeeCC
Confidence             56666665532211              1222 110 00012233999999999999999888   5999999999999


Q ss_pred             CCCccc
Q 007072          314 PLEQNS  319 (619)
Q Consensus       314 ~i~~i~  319 (619)
                      +|....
T Consensus       241 ~l~~~~  246 (571)
T 3cvr_A          241 PLSSRI  246 (571)
T ss_dssp             SCCHHH
T ss_pred             cCCCcC
Confidence            997654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.92  E-value=6.5e-10  Score=104.68  Aligned_cols=105  Identities=19%  Similarity=0.211  Sum_probs=88.2

Q ss_pred             CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072          182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY  261 (619)
Q Consensus       182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~  261 (619)
                      ..+.|++++|.|..++..   +  .++|+.|+|++|.+....++                                    
T Consensus        10 ~~~~l~~s~n~l~~ip~~---~--~~~l~~L~L~~N~i~~~~~~------------------------------------   48 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG---I--PTTTQVLYLYDNQITKLEPG------------------------------------   48 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTT------------------------------------
T ss_pred             CCCEEEeCCCCcCccCcc---C--CCCCcEEEcCCCcCCccChh------------------------------------
Confidence            457899999999998732   1  48999999999998876522                                    


Q ss_pred             CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                                ....+.+|+.|+|++|+|..+|+..|.  .+++|+.|+|++|.|..++    ...+.++++|+.|++..|
T Consensus        49 ----------~~~~l~~L~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           49 ----------VFDRLTQLTRLDLDNNQLTVLPAGVFD--KLTQLTQLSLNDNQLKSIP----RGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             ----------TTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSS
T ss_pred             ----------hhcCcccCCEEECCCCCcCccChhhcc--CCCCCCEEECCCCccCEeC----HHHhcCCCCCCEEEeCCC
Confidence                      112477899999999999999999997  8999999999999999988    456889999999999988


Q ss_pred             CC
Q 007072          342 GP  343 (619)
Q Consensus       342 ~~  343 (619)
                      ..
T Consensus       113 ~~  114 (170)
T 3g39_A          113 PW  114 (170)
T ss_dssp             CB
T ss_pred             CC
Confidence            63

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.92  E-value=1.1e-09  Score=126.20  Aligned_cols=137  Identities=19%  Similarity=0.268  Sum_probs=89.4

Q ss_pred             CCceeeeecccCCCCcc------ccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccch
Q 007072          153 DGTVKWLELEDADIGDD------MLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHC  226 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~------~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~  226 (619)
                      ...+..+.|+.+.|...      ..++.+.+..++.|+.|+|++|+|..++   ..+.+|++|+.|+|++|.+....   
T Consensus       190 ~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~lp---  263 (727)
T 4b8c_D          190 QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS---ANIFKYDFLTRLYLNGNSLTELP---  263 (727)
T ss_dssp             --------------------------------CCCCCCEEECTTSCCSCCC---GGGGGCCSCSCCBCTTSCCSCCC---
T ss_pred             hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCC---hhhcCCCCCCEEEeeCCcCcccC---
Confidence            34556677777776652      2355667788999999999999999876   34558999999999999998543   


Q ss_pred             hhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc
Q 007072          227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS  306 (619)
Q Consensus       227 ~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~  306 (619)
                         ..+..|++|+.|+++...-.              ..|..+    ..|.+|+.|+|++|.|..+|.. |.  +|++|+
T Consensus       264 ---~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~----~~l~~L~~L~L~~N~l~~lp~~-~~--~l~~L~  319 (727)
T 4b8c_D          264 ---AEIKNLSNLRVLDLSHNRLT--------------SLPAEL----GSCFQLKYFYFFDNMVTTLPWE-FG--NLCNLQ  319 (727)
T ss_dssp             ---GGGGGGTTCCEEECTTSCCS--------------SCCSSG----GGGTTCSEEECCSSCCCCCCSS-TT--SCTTCC
T ss_pred             ---hhhhCCCCCCEEeCcCCcCC--------------ccChhh----cCCCCCCEEECCCCCCCccChh-hh--cCCCcc
Confidence               22578999999998753321              234333    2588999999999999999887 55  899999


Q ss_pred             ccccCCCCCCccc
Q 007072          307 HLNIRGNPLEQNS  319 (619)
Q Consensus       307 ~LnLs~N~i~~i~  319 (619)
                      .|+|++|+|....
T Consensus       320 ~L~L~~N~l~~~~  332 (727)
T 4b8c_D          320 FLGVEGNPLEKQF  332 (727)
T ss_dssp             CEECTTSCCCSHH
T ss_pred             EEeCCCCccCCCC
Confidence            9999999998654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.89  E-value=9.1e-10  Score=104.34  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=86.5

Q ss_pred             ccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccccC
Q 007072          183 LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYD  262 (619)
Q Consensus       183 L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~  262 (619)
                      -..|++++|+|..+|.-   +  .++|+.|+|++|.+....++                                     
T Consensus        14 ~~~l~~~~n~l~~iP~~---~--~~~L~~L~Ls~N~l~~~~~~-------------------------------------   51 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAG---I--PTDKQRLWLNNNQITKLEPG-------------------------------------   51 (174)
T ss_dssp             SSEEECCSSCCSSCCSC---C--CTTCSEEECCSSCCCCCCTT-------------------------------------
T ss_pred             CcEEEeCCCCCCccCCC---c--CCCCcEEEeCCCCccccCHH-------------------------------------
Confidence            47899999999998742   2  38999999999998766422                                     


Q ss_pred             CCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          263 KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       263 ~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                               ....+.+|+.|+|++|.|..+|...|.  .+++|+.|+|++|.|..++    ...+.++++|+.|++..|.
T Consensus        52 ---------~~~~l~~L~~L~Ls~N~l~~i~~~~~~--~l~~L~~L~L~~N~l~~l~----~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           52 ---------VFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNHLKSIP----RGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             ---------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSC
T ss_pred             ---------HhcCCcCCCEEECCCCCCCccChhHhC--CcchhhEEECCCCccceeC----HHHhccccCCCEEEeCCCC
Confidence                     112477899999999999999999887  8999999999999999888    4558899999999998886

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.89  E-value=5.1e-09  Score=113.73  Aligned_cols=137  Identities=18%  Similarity=0.169  Sum_probs=78.8

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .+++|++++|.|..   +| . +.++++|+.|+|++|+|+.++.      .+++|+.|+|++|.+.... .      +..
T Consensus       132 ~L~~L~L~~n~l~~---lp-~-~~~l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l~~l~-~------~~~  193 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK---LP-E-LQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEELP-E------LQN  193 (454)
T ss_dssp             TCCEEECCSSCCSS---CC-C-CTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSCC-C------CTT
T ss_pred             CCCEEECcCCCCCC---Cc-c-cCCCCCCCEEECCCCcCcccCC------CcccccEEECcCCcCCcCc-c------ccC
Confidence            45666666666655   33 2 4566666666666666665542      2346666666666665432 1      455


Q ss_pred             CCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCC
Q 007072          235 CPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNP  314 (619)
Q Consensus       235 lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~  314 (619)
                      +++|+.|+++...-.+              .|       ....+|+.|+|++|.+..+|.  |.  .+++|+.|++++|.
T Consensus       194 l~~L~~L~l~~N~l~~--------------l~-------~~~~~L~~L~l~~n~l~~lp~--~~--~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          194 LPFLTAIYADNNSLKK--------------LP-------DLPLSLESIVAGNNILEELPE--LQ--NLPFLTTIYADNNL  248 (454)
T ss_dssp             CTTCCEEECCSSCCSS--------------CC-------CCCTTCCEEECCSSCCSSCCC--CT--TCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCcCCc--------------CC-------CCcCcccEEECcCCcCCcccc--cC--CCCCCCEEECCCCc
Confidence            6666666654322110              01       112467777777777777663  43  67777777777777


Q ss_pred             CCccchHHHHHHHhCCCCCccccccCCC
Q 007072          315 LEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       315 i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +..++        ..+++|+.|+++.+.
T Consensus       249 l~~l~--------~~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          249 LKTLP--------DLPPSLEALNVRDNY  268 (454)
T ss_dssp             CSSCC--------SCCTTCCEEECCSSC
T ss_pred             CCccc--------ccccccCEEECCCCc
Confidence            76655        124667777666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.87  E-value=1.6e-09  Score=124.58  Aligned_cols=150  Identities=17%  Similarity=0.052  Sum_probs=86.8

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchh-------hHHHHHhcccccceeecCCCcccccccch
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVE-------IIVQEVTKLKNLRALWLNNNPVLKKCDHC  226 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~-------~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~  226 (619)
                      ..+..|+|.++++..   ++.      .-|..|+|+.|.|..+.       .+...+..+++|+.|+|++|.+....+. 
T Consensus       173 ~~~~~l~L~~n~~~~---~~~------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-  242 (727)
T 4b8c_D          173 PLTPKIELFANGKDE---ANQ------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-  242 (727)
T ss_dssp             ----------------------------------------------------------CCCCCCEEECTTSCCSCCCGG-
T ss_pred             CccceEEeeCCCCCc---chh------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-
Confidence            457789999999887   332      22344445555444433       2245788999999999999999865422 


Q ss_pred             hhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc
Q 007072          227 MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS  306 (619)
Q Consensus       227 ~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~  306 (619)
                           +..|++|+.|+++...-.              ..|..+    ..|.+|+.|||++|.|..+|..+.   +|++|+
T Consensus       243 -----~~~l~~L~~L~Ls~N~l~--------------~lp~~~----~~l~~L~~L~Ls~N~l~~lp~~~~---~l~~L~  296 (727)
T 4b8c_D          243 -----IFKYDFLTRLYLNGNSLT--------------ELPAEI----KNLSNLRVLDLSHNRLTSLPAELG---SCFQLK  296 (727)
T ss_dssp             -----GGGCCSCSCCBCTTSCCS--------------CCCGGG----GGGTTCCEEECTTSCCSSCCSSGG---GGTTCS
T ss_pred             -----hcCCCCCCEEEeeCCcCc--------------ccChhh----hCCCCCCEEeCcCCcCCccChhhc---CCCCCC
Confidence                 337999999998753321              233322    358899999999999999987654   799999


Q ss_pred             ccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCC
Q 007072          307 HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPL  344 (619)
Q Consensus       307 ~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l  344 (619)
                      +|+|++|.|..++     ..|.++++|+.|++..|..-
T Consensus       297 ~L~L~~N~l~~lp-----~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          297 YFYFFDNMVTTLP-----WEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             EEECCSSCCCCCC-----SSTTSCTTCCCEECTTSCCC
T ss_pred             EEECCCCCCCccC-----hhhhcCCCccEEeCCCCccC
Confidence            9999999998877     24889999999999988753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.86  E-value=7.1e-10  Score=114.43  Aligned_cols=193  Identities=13%  Similarity=0.134  Sum_probs=129.8

Q ss_pred             CCceeeeecccCCCCc-----------------cccccccccCC--------CCCccEeecCCCcccchhhHHHHHhccc
Q 007072          153 DGTVKWLELEDADIGD-----------------DMLLSLNLSSK--------FPDLQALSLCGNKLETVEIIVQEVTKLK  207 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~-----------------~~li~l~l~~~--------~p~L~~L~Ls~NkL~~~~~v~~~l~~L~  207 (619)
                      ...+++|+|++|.|..                 ...+|...+.+        |++|+.|+|.. .|+.++  ..++.+|+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~--~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE--DAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC--TTTTTTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchh--HHHhhcCc
Confidence            4679999999999981                 11366677778        99999999999 888887  57899999


Q ss_pred             ccceeecCCCcccccccchhhhHHhhcCCccccccccccccc---cccc---cccccccc--------------------
Q 007072          208 NLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINF---GEWA---LGFCGEVY--------------------  261 (619)
Q Consensus       208 ~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~---~~~~---l~fc~~~~--------------------  261 (619)
                      +|+.|+|++|.+....+     ..+.++.++..+........   ..|.   ..-|...-                    
T Consensus       125 ~L~~l~l~~n~i~~i~~-----~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~  199 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLP-----EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL  199 (329)
T ss_dssp             TCCEEEBCCSSCCEECT-----TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred             ccceEEcCCCCccccch-----hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence            99999999999876653     23455666665544321100   0000   00011000                    


Q ss_pred             CCCCCCccccCC-----------CcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCC
Q 007072          262 DKDNPSSLCLRD-----------RPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGF  330 (619)
Q Consensus       262 ~~~~p~~l~~~~-----------~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~  330 (619)
                      ...+...+....           ..+.+|+.|+|++|.|..+|...|.  ++++|+.|+|.+| +..+.    ...|.+|
T Consensus       200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~--~~~~L~~l~l~~n-i~~I~----~~aF~~~  272 (329)
T 3sb4_A          200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA--QKKYLLKIKLPHN-LKTIG----QRVFSNC  272 (329)
T ss_dssp             CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT--TCTTCCEEECCTT-CCEEC----TTTTTTC
T ss_pred             CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh--CCCCCCEEECCcc-cceeh----HHHhhCC
Confidence            000000000000           0167899999999999999999998  9999999999998 88887    5678999


Q ss_pred             CCCc-cccccCCCCCCchhHHHhhhcCcccccc
Q 007072          331 PCLQ-SLGVDIPGPLGESAIEILESLPTLCTLN  362 (619)
Q Consensus       331 ~~L~-sL~ld~p~~l~~~~~~il~~lp~L~~LN  362 (619)
                      ++|+ +|.+...  ++.-....+..|++|+.|+
T Consensus       273 ~~L~~~l~l~~~--l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          273 GRLAGTLELPAS--VTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEEEECTT--CCEECTTTTTTCTTEEEEE
T ss_pred             hhccEEEEEccc--ceEEchhhhhCCccCCEEE
Confidence            9999 8887653  2222234566778888775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.81  E-value=7.3e-11  Score=113.08  Aligned_cols=127  Identities=27%  Similarity=0.367  Sum_probs=100.5

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|+|..   +|  ....+++|+.|+|++|.|..++   ..+..+++|+.|+|++|.+....  .     +
T Consensus        47 l~~L~~L~ls~n~l~~---l~--~~~~l~~L~~L~l~~n~l~~l~---~~~~~~~~L~~L~L~~N~l~~l~--~-----~  111 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK---IS--SLSGMENLRILSLGRNLIKKIE---NLDAVADTLEELWISYNQIASLS--G-----I  111 (198)
T ss_dssp             TTTCSEEECSEEEESC---CC--CHHHHTTCCEEEEEEEEECSCS---SHHHHHHHCSEEEEEEEECCCHH--H-----H
T ss_pred             CCCCCEEECCCCCCcc---cc--ccccCCCCCEEECCCCCccccc---chhhcCCcCCEEECcCCcCCcCC--c-----c
Confidence            4689999999999988   55  5678999999999999999886   46677899999999999877542  0     1


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs  311 (619)
                      .                                         .+.+|+.|+|++|.|..++. ..+.  .+++|+.|+++
T Consensus       112 ~-----------------------------------------~l~~L~~L~l~~N~i~~~~~~~~l~--~l~~L~~L~l~  148 (198)
T 1ds9_A          112 E-----------------------------------------KLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLA  148 (198)
T ss_dssp             H-----------------------------------------HHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEEC
T ss_pred             c-----------------------------------------cCCCCCEEECCCCcCCchhHHHHHh--cCCCCCEEEec
Confidence            1                                         25678889999999998876 5555  89999999999


Q ss_pred             CCCCCccch-----H-HHHHHHhCCCCCcccc
Q 007072          312 GNPLEQNSV-----R-ELLEVLKGFPCLQSLG  337 (619)
Q Consensus       312 ~N~i~~i~~-----~-~l~~~l~~~~~L~sL~  337 (619)
                      +|++.....     . -....+..+++|+.|+
T Consensus       149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999855420     1 1234588999999986

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.79  E-value=5.5e-09  Score=107.87  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             eeecccC-CCCccccccccccCCCCCccEeecCC-CcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072          158 WLELEDA-DIGDDMLLSLNLSSKFPDLQALSLCG-NKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC  235 (619)
Q Consensus       158 ~L~Ls~~-~I~~~~li~l~l~~~~p~L~~L~Ls~-NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l  235 (619)
                      .++.+++ +|..   +|.  ...+++|+.|+|++ |+|..++  ...+.+|++|+.|+|++|.+....++.         
T Consensus        12 ~v~~~~~n~l~~---ip~--l~~~~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~---------   75 (347)
T 2ifg_A           12 GLRCTRDGALDS---LHH--LPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPDA---------   75 (347)
T ss_dssp             CEECCSSCCCTT---TTT--SCSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCEECTTG---------
T ss_pred             EEEcCCCCCCCc---cCC--CCCCCCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccceeCHHH---------
Confidence            4677887 7877   665  66788899999996 9998886  456888999999999999877665321         


Q ss_pred             CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072          236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i  315 (619)
                                                           +..|.+|+.|||++|.|..+|...|.  .++ |+.|+|++|++
T Consensus        76 -------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~--~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           76 -------------------------------------FHFTPRLSRLNLSFNALESLSWKTVQ--GLS-LQELVLSGNPL  115 (347)
T ss_dssp             -------------------------------------GGSCSCCCEEECCSSCCSCCCSTTTC--SCC-CCEEECCSSCC
T ss_pred             -------------------------------------hcCCcCCCEEeCCCCccceeCHHHcc--cCC-ceEEEeeCCCc
Confidence                                                 11377899999999999999999886  555 99999999998


Q ss_pred             Cc
Q 007072          316 EQ  317 (619)
Q Consensus       316 ~~  317 (619)
                      .-
T Consensus       116 ~c  117 (347)
T 2ifg_A          116 HC  117 (347)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.77  E-value=8.5e-09  Score=113.31  Aligned_cols=20  Identities=10%  Similarity=0.137  Sum_probs=13.9

Q ss_pred             HHHhcCCCCHHHHHHHHHHh
Q 007072           20 VLLAASGLPQSLHRQLFQKL   39 (619)
Q Consensus        20 ~~l~~~~~P~~l~~~L~~kl   39 (619)
                      ..+.++++|.++|...+..|
T Consensus         9 ~~~~~~~LPdeil~~I~~~L   28 (592)
T 3ogk_B            9 CKLSCVATVDDVIEQVMTYI   28 (592)
T ss_dssp             ---CCCCCGGGTHHHHHTTC
T ss_pred             HhhccCCCCHHHHHHHHHhc
Confidence            34566788888888888887

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.76  E-value=1.5e-08  Score=109.94  Aligned_cols=56  Identities=23%  Similarity=0.223  Sum_probs=35.8

Q ss_pred             cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+.+|+.|++++|.+..+|.      ..++|+.|++++|.+..++      .+.++++|+.|+++.+.
T Consensus       193 ~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~n~l~~lp------~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          193 NLPFLTAIYADNNSLKKLPD------LPLSLESIVAGNNILEELP------ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             TCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCSSCC------CCTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCCcCCC------CcCcccEEECcCCcCCccc------ccCCCCCCCEEECCCCc
Confidence            45666666777776666553      2346777777777766554      25677777777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.76  E-value=1.7e-09  Score=118.88  Aligned_cols=90  Identities=19%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             CceeeeecccCCCCccccccccccCCCCC-ccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPD-LQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~-L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..++.|+|++|.|.+.  .+..+...+|+ |+.|+|++|.-...........++++|+.|+|++|.+..... .....++
T Consensus       112 ~~L~~L~L~~~~i~~~--~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~  188 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDL--DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG-KWLHELA  188 (592)
T ss_dssp             TTCCEEEEESCBCCHH--HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS-HHHHHHH
T ss_pred             CCCCeEEeeccEecHH--HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch-hHHHHHH
Confidence            4577777777776651  11112222444 666777666522222333445566777777777776543321 1234455


Q ss_pred             hcCCcccccccccc
Q 007072          233 QGCPKLEIYNSNFT  246 (619)
Q Consensus       233 ~~lP~LeiLn~~~T  246 (619)
                      ..+|+|+.|+++.+
T Consensus       189 ~~~~~L~~L~L~~n  202 (592)
T 3ogk_B          189 QHNTSLEVLNFYMT  202 (592)
T ss_dssp             HHCCCCCEEECTTC
T ss_pred             hcCCCccEEEeecc
Confidence            66666666666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.73  E-value=1.6e-09  Score=118.87  Aligned_cols=185  Identities=17%  Similarity=0.110  Sum_probs=112.3

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      ...++.|+|++|.|.+  ..+..+...+|+|+.|+|++| .+... .+...+.++++|+.|+|++|.+...... ....+
T Consensus       104 ~~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~i~~~~~~-~l~~~  179 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFSTD-GLAAIAATCRNLKELDLRESDVDDVSGH-WLSHF  179 (594)
T ss_dssp             CTTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEEEHH-HHHHHHHHCTTCCEEECTTCEEECCCGG-GGGGS
T ss_pred             CCCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCCCHH-HHHHHHHhCCCCCEEeCcCCccCCcchH-HHHHH
Confidence            3578999999999887  222233346899999999999 56542 2445677899999999999997764422 23445


Q ss_pred             hhcCCcccccccccccc-cccccccccccccCCCCCCccccCCCcCCcccccccCcc-ccc-------------------
Q 007072          232 LQGCPKLEIYNSNFTIN-FGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNR-CIH-------------------  290 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n-~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N-~I~-------------------  290 (619)
                      ...+++|+.|+++.+.. .+.-.+               ......+.+|+.|+|++| .+.                   
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l---------------~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSAL---------------ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHH---------------HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             hhcCCcCcEEEecccCCcCCHHHH---------------HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence            56788999998876541 100000               000001234444444444 111                   


Q ss_pred             ------------------------------cCcccccC--CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072          291 ------------------------------NLVNKAFS--PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       291 ------------------------------~Lp~~~f~--~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                                                    .+....+.  ...+++|++|+|++|.+.+   ..+..++.++++|++|.+
T Consensus       245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~---~~l~~~~~~~~~L~~L~l  321 (594)
T 2p1m_B          245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS---YDLVKLLCQCPKLQRLWV  321 (594)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH---HHHHHHHTTCTTCCEEEE
T ss_pred             ccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH---HHHHHHHhcCCCcCEEeC
Confidence                                          01110010  0046888888888888543   234556788899999988


Q ss_pred             cCCCCCCchh-HHHhhhcCccccc
Q 007072          339 DIPGPLGESA-IEILESLPTLCTL  361 (619)
Q Consensus       339 d~p~~l~~~~-~~il~~lp~L~~L  361 (619)
                      ..+  ++... ..+...+++|+.|
T Consensus       322 ~~~--~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          322 LDY--IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             EGG--GHHHHHHHHHHHCTTCCEE
T ss_pred             cCc--cCHHHHHHHHHhCCCCCEE
Confidence            765  22222 3444567888777

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.67  E-value=5e-09  Score=111.28  Aligned_cols=164  Identities=19%  Similarity=0.159  Sum_probs=112.2

Q ss_pred             CCCccEeecCCCcccchhh--HHHHHhc-ccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccc-c
Q 007072          180 FPDLQALSLCGNKLETVEI--IVQEVTK-LKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWAL-G  255 (619)
Q Consensus       180 ~p~L~~L~Ls~NkL~~~~~--v~~~l~~-L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l-~  255 (619)
                      .+.|+.|+|++|.|.....  +...+.. .++|+.|+|++|.+....    ...+...+++|+.|+++...-. ..+. .
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~----~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG----LRTLLPVFLRARKLGLQLNSLG-PEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH----HHHTHHHHHTEEEEECCSSCCC-HHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH----HHHHHHHHHhccHhhcCCCCCC-HHHHHH
Confidence            4789999999999987652  2223332 279999999999986543    3455666788999998754321 1111 1


Q ss_pred             ccccccCCCCCCccccCCCcCCcccccccCccccccCcccccC--CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCC
Q 007072          256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFS--PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCL  333 (619)
Q Consensus       256 fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~--~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L  333 (619)
                      +|...            .....+|+.|+|++|.|.......+.  ...+++|++|+|++|.|.+..+..+...+..+++|
T Consensus       146 L~~~L------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L  213 (372)
T 3un9_A          146 LRDLL------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL  213 (372)
T ss_dssp             HHHHH------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred             HHHHH------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence            11100            01245799999999999864332220  12688999999999999888777788889999999


Q ss_pred             ccccccCCCCCCchh----HHHhhhcCccccc
Q 007072          334 QSLGVDIPGPLGESA----IEILESLPTLCTL  361 (619)
Q Consensus       334 ~sL~ld~p~~l~~~~----~~il~~lp~L~~L  361 (619)
                      ++|++..|.. +...    ...+...++|+.|
T Consensus       214 ~~L~Ls~N~i-~~~g~~~l~~~L~~~~~L~~L  244 (372)
T 3un9_A          214 QELNVAYNGA-GDTAALALARAAREHPSLELL  244 (372)
T ss_dssp             CEEECCSSCC-CHHHHHHHHHHHHHCSSCCEE
T ss_pred             CeEECCCCCC-CHHHHHHHHHHHHhCCCCCEE
Confidence            9999998863 3322    2334456777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.64  E-value=8.7e-09  Score=113.08  Aligned_cols=81  Identities=21%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             cCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccC--------CCCCC
Q 007072          275 PLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDI--------PGPLG  345 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~--------p~~l~  345 (619)
                      .+.+|+.|+|++|.+..... .++.  ++++|+.|++++| +.+   ..+..+..++++|++|.+..        ...++
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~--~~~~L~~L~l~~~-~~~---~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~  360 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLC--QCPKLQRLWVLDY-IED---AGLEVLASTCKDLRELRVFPSEPFVMEPNVALT  360 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHT--TCTTCCEEEEEGG-GHH---HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHh--cCCCcCEEeCcCc-cCH---HHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence            46799999999999663221 2233  7899999999998 432   23455567799999998832        22344


Q ss_pred             chh-HHHhhhcCccccc
Q 007072          346 ESA-IEILESLPTLCTL  361 (619)
Q Consensus       346 ~~~-~~il~~lp~L~~L  361 (619)
                      ... ..+...+|+|+.|
T Consensus       361 ~~~l~~l~~~~~~L~~L  377 (594)
T 2p1m_B          361 EQGLVSVSMGCPKLESV  377 (594)
T ss_dssp             HHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHHhchhHHHH
Confidence            333 3444558888877

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.64  E-value=1.6e-08  Score=104.32  Aligned_cols=103  Identities=23%  Similarity=0.273  Sum_probs=85.7

Q ss_pred             cEeecCCC-cccchhhHHHHHhcccccceeecCC-CcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072          184 QALSLCGN-KLETVEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY  261 (619)
Q Consensus       184 ~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~-Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~  261 (619)
                      ..++++++ .|..+|.    +..+++|+.|+|++ |.+....++.                                   
T Consensus        11 ~~v~~~~~n~l~~ip~----l~~~~~L~~L~l~~~n~l~~~~~~~-----------------------------------   51 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH----LPGAENLTELYIENQQHLQHLELRD-----------------------------------   51 (347)
T ss_dssp             SCEECCSSCCCTTTTT----SCSCSCCSEEECCSCSSCCEECGGG-----------------------------------
T ss_pred             CEEEcCCCCCCCccCC----CCCCCCeeEEEccCCCCCCCcChhH-----------------------------------
Confidence            45799998 9999873    89999999999996 9987765321                                   


Q ss_pred             CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                                 +..|.+|+.|+|++|.|..+++..|.  +|++|+.|+|++|.|..++    ...+..++ |+.|++..|
T Consensus        52 -----------~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~----~~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           52 -----------LRGLGELRNLTIVKSGLRFVAPDAFH--FTPRLSRLNLSFNALESLS----WKTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             -----------SCSCCCCSEEECCSSCCCEECTTGGG--SCSCCCEEECCSSCCSCCC----STTTCSCC-CCEEECCSS
T ss_pred             -----------hccccCCCEEECCCCccceeCHHHhc--CCcCCCEEeCCCCccceeC----HHHcccCC-ceEEEeeCC
Confidence                       12478899999999999999999987  8999999999999999888    34556665 999999888


Q ss_pred             CC
Q 007072          342 GP  343 (619)
Q Consensus       342 ~~  343 (619)
                      ..
T Consensus       114 ~~  115 (347)
T 2ifg_A          114 PL  115 (347)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=3.2e-08  Score=101.99  Aligned_cols=177  Identities=10%  Similarity=0.026  Sum_probs=112.0

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccc----ccc-----
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVL----KKC-----  223 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~----~~~-----  223 (619)
                      ...++.|.|.+ +|..   ++...|..|++|+.|+|.+|.+..++  ..++.++.++..|.++.+...    ...     
T Consensus       100 ~~~L~~l~L~~-~i~~---I~~~aF~~~~~L~~l~l~~n~i~~i~--~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKN---IEDAAFKGCDNLKICQIRKKTAPNLL--PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             CTTCCC-CBCT-TCCE---ECTTTTTTCTTCCEEEBCCSSCCEEC--TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cCCCcEEECCc-cccc---hhHHHhhcCcccceEEcCCCCccccc--hhhhcCCCceEEecCcchhhhhccccccccccc
Confidence            67899999999 8888   88899999999999999999987776  456777777776666553210    000     


Q ss_pred             -------------cch---------------------------hhhHHhhcCCcccccccccccccccccccccccccCC
Q 007072          224 -------------DHC---------------------------MEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDK  263 (619)
Q Consensus       224 -------------~~~---------------------------~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~  263 (619)
                                   .+.                           -...+...|++|+.++++.++...             
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-------------  240 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-------------  240 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-------------
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-------------
Confidence                         000                           011222347888887776432210             


Q ss_pred             CCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc-ccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          264 DNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS-HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       264 ~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~-~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                       .|.   ..+..+.+|+.|+|++| |..++...|.  ++++|+ .|++.+ .+..+.    ...|.+|++|++|.+..+.
T Consensus       241 -I~~---~aF~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~----~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          241 -IPD---FTFAQKKYLLKIKLPHN-LKTIGQRVFS--NCGRLAGTLELPA-SVTAIE----FGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             -ECT---TTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEEECT-TCCEEC----TTTTTTCTTEEEEEECSSC
T ss_pred             -ecH---hhhhCCCCCCEEECCcc-cceehHHHhh--CChhccEEEEEcc-cceEEc----hhhhhCCccCCEEEeCCCc
Confidence             010   11234667888888877 7778877777  788887 888877 666666    4567788888888775443


Q ss_pred             CCCchhHHHhhhcCccccc
Q 007072          343 PLGESAIEILESLPTLCTL  361 (619)
Q Consensus       343 ~l~~~~~~il~~lp~L~~L  361 (619)
                      . ..-....+..+++|+.|
T Consensus       309 i-~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          309 I-TTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             C-CEECTTTTCTTCCCCEE
T ss_pred             c-CccchhhhcCCcchhhh
Confidence            2 11112335556666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=1.2e-07  Score=97.02  Aligned_cols=121  Identities=23%  Similarity=0.295  Sum_probs=80.5

Q ss_pred             cCCCCCccE--eecCCCcccchhhHHHHH-hcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccc
Q 007072          177 SSKFPDLQA--LSLCGNKLETVEIIVQEV-TKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWA  253 (619)
Q Consensus       177 ~~~~p~L~~--L~Ls~NkL~~~~~v~~~l-~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~  253 (619)
                      +...|+|..  ++++.|++..++.+.+.+ .++++|+.|+||+|.+.....  + ...+.                    
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~--l-~~~~~--------------------  193 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD--M-SSIVQ--------------------  193 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG--G-TTHHH--------------------
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc--c-hhHHh--------------------
Confidence            456677887  788899877777666655 678999999999998776541  0 00111                    


Q ss_pred             ccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCCCc-cchHHHHHHHhCCC
Q 007072          254 LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPLEQ-NSVRELLEVLKGFP  331 (619)
Q Consensus       254 l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i~~-i~~~~l~~~l~~~~  331 (619)
                                           .+.+|+.||||+|.|..+.. ..++  .+ +|+.|+|++|++.. ++            
T Consensus       194 ---------------------~l~~L~~L~Ls~N~i~~~~~l~~l~--~l-~L~~L~L~~Npl~~~~~------------  237 (267)
T 3rw6_A          194 ---------------------KAPNLKILNLSGNELKSERELDKIK--GL-KLEELWLDGNSLCDTFR------------  237 (267)
T ss_dssp             ---------------------HSTTCCEEECTTSCCCSGGGGGGGT--TS-CCSEEECTTSTTGGGCS------------
T ss_pred             ---------------------hCCCCCEEECCCCccCCchhhhhcc--cC-CcceEEccCCcCccccC------------
Confidence                                 25567777777777777633 2222  34 78888888888753 11            


Q ss_pred             CCccccccCCCCCCchhHHHhhhcCccccccCccch
Q 007072          332 CLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       332 ~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg~~~s  367 (619)
                                 ....+...+++.+|+|+.|||..++
T Consensus       238 -----------~~~~y~~~il~~~P~L~~LDg~~v~  262 (267)
T 3rw6_A          238 -----------DQSTYISAIRERFPKLLRLDGHELP  262 (267)
T ss_dssp             -----------SHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred             -----------cchhHHHHHHHHCcccCeECCcCCC
Confidence                       0012335788899999999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=4.3e-07  Score=86.78  Aligned_cols=65  Identities=23%  Similarity=0.281  Sum_probs=41.8

Q ss_pred             cccccccCccccccCccccc--CCCCCCCCccccc--CCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          278 SVTSLDLSNRCIHNLVNKAF--SPAEMPSLSHLNI--RGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f--~~~~L~~L~~LnL--s~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|+.|+|++|.|..-....+  .....++|++|+|  ++|.|.+.....+...+...++|++|++..+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            45556666666553211100  0114667888888  77888777766677778888888888877664

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*

Probab=98.07  E-value=1e-06  Score=94.27  Aligned_cols=72  Identities=13%  Similarity=0.033  Sum_probs=61.2

Q ss_pred             EEechhHHHhhcCCCC-E-EecCCCCCccEEEEecccchhHHHhhCC-CCceeeccCCCCchhhhhhHHHHHHHhh
Q 007072          543 VYTDIPYVEEFLTRTE-F-VITTEPKDADIIWTSLQVDEDMKTATGI-TDQQYVNQFPFESCLVMKHHLAETVQKV  615 (619)
Q Consensus       543 Vytd~~~v~~~Lt~~~-F-~lvd~~~eADIiW~~~h~~~d~k~~~~~-~p~~~iNQFP~E~~lt~Kd~La~~~~~~  615 (619)
                      ++|.|+.|++.|++.. + +++++..++||+|...|.. .|+.+.-. ++.|.||+||+++.||.||.||..++|+
T Consensus        13 ~~svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~-p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~   87 (380)
T 3tig_A           13 NSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRL-PFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTS   87 (380)
T ss_dssp             SCHHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSC-CGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCC-CHHHhccCCCcceEEeecCCcccccccHHHHHHHHHh
Confidence            3566788888888888 5 6777889999999998875 78888654 6789999999999999999999999884

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.05  E-value=1.1e-06  Score=93.23  Aligned_cols=168  Identities=16%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             CceeeeecccCCCCccc---c---ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchh
Q 007072          154 GTVKWLELEDADIGDDM---L---LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCM  227 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~---l---i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~  227 (619)
                      ..++.|.+..+..+...   +   ....+...+|+|+.|+|++|.-..++.    + .+++|+.|+|..|.+....    
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~----~-~~~~L~~L~L~~~~l~~~~----  209 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK----K-PRPNLKSLEIISGGLPDSV----  209 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS----C-BCTTCSEEEEECSBCCHHH----
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc----c-cCCCCcEEEEecCCCChHH----
Confidence            47777877654332100   1   011333578999999999983122321    2 4899999999888765322    


Q ss_pred             hhHHh-hcCCccccccccccccc-c-cccccccccccCCCCCCccccC--CCcCCcccccccCccccccCc-ccccCCCC
Q 007072          228 EDAIL-QGCPKLEIYNSNFTINF-G-EWALGFCGEVYDKDNPSSLCLR--DRPLQSVTSLDLSNRCIHNLV-NKAFSPAE  301 (619)
Q Consensus       228 ~~~il-~~lP~LeiLn~~~T~n~-~-~~~l~fc~~~~~~~~p~~l~~~--~~~L~~L~~LdLS~N~I~~Lp-~~~f~~~~  301 (619)
                      ...+. ..+|+|+.|++.+..+. + ...+            ..+...  ...+++|+.|+|++|.|..-. ..++....
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~------------~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~  277 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDM------------NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI  277 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCG------------GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhH------------HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc
Confidence            23333 47999999988643221 1 0000            001110  123678999999999987422 22332225


Q ss_pred             CCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          302 MPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       302 L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +|+|+.|+|+.|.|.+.....+..-+.++++|++|++..+.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            89999999999999876654555455678999999988764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.02  E-value=4.9e-06  Score=89.21  Aligned_cols=77  Identities=10%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQG  234 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~  234 (619)
                      .++.+.|.. .|..   ++...+.+|++|+.|+|.+|+|+.++  ..++. ..+|+.+.|.+| +....     ...+.+
T Consensus       158 ~L~~i~lp~-~l~~---I~~~aF~~c~~L~~l~l~~n~l~~I~--~~aF~-~~~L~~l~lp~~-l~~I~-----~~aF~~  224 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQ---LKEDIFYYCYNLKKADLSKTKITKLP--ASTFV-YAGIEEVLLPVT-LKEIG-----SQAFLK  224 (401)
T ss_dssp             CCCEEECCT-TCCE---ECSSTTTTCTTCCEEECTTSCCSEEC--TTTTT-TCCCSEEECCTT-CCEEC-----TTTTTT
T ss_pred             CceEEEeCC-CccE---ehHHHhhCcccCCeeecCCCcceEec--hhhEe-ecccCEEEeCCc-hheeh-----hhHhhC
Confidence            466666664 4555   66677788888888888888888877  33444 578888888755 44443     345777


Q ss_pred             CCcccccccc
Q 007072          235 CPKLEIYNSN  244 (619)
Q Consensus       235 lP~LeiLn~~  244 (619)
                      |++|+.+.+.
T Consensus       225 ~~~L~~l~l~  234 (401)
T 4fdw_A          225 TSQLKTIEIP  234 (401)
T ss_dssp             CTTCCCEECC
T ss_pred             CCCCCEEecC
Confidence            8888877664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.00  E-value=2.9e-06  Score=80.95  Aligned_cols=122  Identities=12%  Similarity=0.118  Sum_probs=79.4

Q ss_pred             CCceeeeecccC-CCCccccccc-cccCCCCCccEeecCCCcccchh--hHHHHHhcccccceeecCCCcccccccchhh
Q 007072          153 DGTVKWLELEDA-DIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVE--IIVQEVTKLKNLRALWLNNNPVLKKCDHCME  228 (619)
Q Consensus       153 ~~~l~~L~Ls~~-~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~--~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~  228 (619)
                      ...++.|+|++| +|.+.-...+ ......++|+.|+|++|.|.+..  .+...+...++|+.|+|++|.+....-    
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~----  110 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI----  110 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH----
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH----
Confidence            577888999998 8887322222 11245688899999999887643  345667777889999999988775431    


Q ss_pred             hHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCccccccc--CccccccCcc----cccCCCCC
Q 007072          229 DAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL--SNRCIHNLVN----KAFSPAEM  302 (619)
Q Consensus       229 ~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdL--S~N~I~~Lp~----~~f~~~~L  302 (619)
                      ..+...                                      .....+|+.|+|  ++|.|..--.    ..+.  ..
T Consensus       111 ~~l~~~--------------------------------------L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~--~n  150 (185)
T 1io0_A          111 LALVEA--------------------------------------LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE--KN  150 (185)
T ss_dssp             HHHHHG--------------------------------------GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH--HC
T ss_pred             HHHHHH--------------------------------------HHhCCCceEEEecCCCCCCCHHHHHHHHHHHH--hC
Confidence            111110                                      011346788888  7788874322    1222  56


Q ss_pred             CCCcccccCCCCCCcc
Q 007072          303 PSLSHLNIRGNPLEQN  318 (619)
Q Consensus       303 ~~L~~LnLs~N~i~~i  318 (619)
                      ++|++|+|++|.|.+-
T Consensus       151 ~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          151 TTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             SSCCEEECCCSSHHHH
T ss_pred             CCcCEEeccCCCCChH
Confidence            8899999999987643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.97  E-value=5.5e-06  Score=84.69  Aligned_cols=88  Identities=25%  Similarity=0.395  Sum_probs=69.2

Q ss_pred             CCCceeeeecccCCCCccccccc-cccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccc--hhh
Q 007072          152 GDGTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDH--CME  228 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~--~~~  228 (619)
                      +...++.|+|++|.|..  +.++ ++...+|+|+.|+|++|+|.+++.+ ..+.++ +|+.|+|++||+....+.  +..
T Consensus       168 ~l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HCTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSGGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hCCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCchhh-hhcccC-CcceEEccCCcCccccCcchhHH
Confidence            35689999999999998  3332 4556899999999999999998543 344455 999999999999874332  455


Q ss_pred             hHHhhcCCccccccc
Q 007072          229 DAILQGCPKLEIYNS  243 (619)
Q Consensus       229 ~~il~~lP~LeiLn~  243 (619)
                      ..++..||+|+.||-
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence            678899999999984

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.90  E-value=8.9e-06  Score=87.17  Aligned_cols=65  Identities=17%  Similarity=0.138  Sum_probs=51.0

Q ss_pred             cCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072          151 KGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       151 ~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      .|-..|+.+.|++|+|..   ++...+. +.+|+.|.|..| ++.++  ..++.++++|+.+.|.+| +....
T Consensus       177 ~~c~~L~~l~l~~n~l~~---I~~~aF~-~~~L~~l~lp~~-l~~I~--~~aF~~~~~L~~l~l~~~-l~~I~  241 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITK---LPASTFV-YAGIEEVLLPVT-LKEIG--SQAFLKTSQLKTIEIPEN-VSTIG  241 (401)
T ss_dssp             TTCTTCCEEECTTSCCSE---ECTTTTT-TCCCSEEECCTT-CCEEC--TTTTTTCTTCCCEECCTT-CCEEC
T ss_pred             hCcccCCeeecCCCcceE---echhhEe-ecccCEEEeCCc-hheeh--hhHhhCCCCCCEEecCCC-ccCcc
Confidence            445779999999999888   7777776 689999999855 77776  568899999999999876 44433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.51  E-value=4.3e-05  Score=81.08  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=91.6

Q ss_pred             CCCCCccEeecCCCcccch-------hhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccc
Q 007072          178 SKFPDLQALSLCGNKLETV-------EIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFG  250 (619)
Q Consensus       178 ~~~p~L~~L~Ls~NkL~~~-------~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~  250 (619)
                      .++|+|++|.+.++..+..       ..+...+..+|+|+.|+|++|.-....     .  + .+|+|+.|++..++...
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~-----~--~-~~~~L~~L~L~~~~l~~  207 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG-----K--K-PRPNLKSLEIISGGLPD  207 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC-----S--C-BCTTCSEEEEECSBCCH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec-----c--c-cCCCCcEEEEecCCCCh
Confidence            3788999998877643321       124578889999999999988311111     1  1 37888888775332211


Q ss_pred             cccccccccccCCCCCCccccCCCcCCcccccccCc--cc------cccCcccccCCCCCCCCcccccCCCCCCccchHH
Q 007072          251 EWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSN--RC------IHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRE  322 (619)
Q Consensus       251 ~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~--N~------I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~  322 (619)
                      .-.-..|               ...+++|+.|+|+.  |.      +..+.. .++...+|+|++|+|++|.+.+.....
T Consensus       208 ~~l~~l~---------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          208 SVVEDIL---------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             HHHHHHH---------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             HHHHHHH---------------HccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            0000001               11377899999863  22      222211 232235899999999999986533111


Q ss_pred             HHHHHhCCCCCccccccCCCCCCchh-HHHh---hhcCccccc
Q 007072          323 LLEVLKGFPCLQSLGVDIPGPLGESA-IEIL---ESLPTLCTL  361 (619)
Q Consensus       323 l~~~l~~~~~L~sL~ld~p~~l~~~~-~~il---~~lp~L~~L  361 (619)
                      +.. -..+|+|++|++..|. ++... ..+.   ..+++|+.|
T Consensus       272 la~-a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L  312 (362)
T 2ra8_A          272 FLE-SDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFI  312 (362)
T ss_dssp             HHH-CSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEE
T ss_pred             HHh-CccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEE
Confidence            111 1368999999998775 34432 2333   345666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.48  E-value=0.0001  Score=71.02  Aligned_cols=89  Identities=12%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcc----cccceeecCCCc-ccccccc
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKL----KNLRALWLNNNP-VLKKCDH  225 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L----~~Lk~L~Ls~Np-i~~~~~~  225 (619)
                      +.-.++.|++++|.|.+   ..+.....|++|+.|+|++| .|++..  ...+.++    ++|+.|+|++|+ |...   
T Consensus        59 ~~~~L~~LDLs~~~Itd---~GL~~L~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~~L~~L~Ls~C~~ITD~---  130 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMS---IGFDHMEGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQKSMLEMEIISCGNVTDK---  130 (176)
T ss_dssp             TCCCEEEEEEESCCCCG---GGGGGGTTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHHHCCEEEEESCTTCCHH---
T ss_pred             CCceEeEEeCcCCCccH---HHHHHhcCCCCCCEEEeCCCCccCHHH--HHHHHhcccccCCCCEEEcCCCCcCCHH---
Confidence            44579999999999999   55555579999999999999 588765  5667764    589999999997 5543   


Q ss_pred             hhhhHHhhcCCcccccccccccccc
Q 007072          226 CMEDAILQGCPKLEIYNSNFTINFG  250 (619)
Q Consensus       226 ~~~~~il~~lP~LeiLn~~~T~n~~  250 (619)
                      ++ . .+..||+|+.|+++.+...+
T Consensus       131 Gl-~-~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          131 GI-I-ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HH-H-HGGGCTTCCEEEEESCTTCC
T ss_pred             HH-H-HHhcCCCCCEEECCCCCCCC
Confidence            23 2 34679999999998655443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.37  E-value=5.2e-05  Score=72.97  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=30.3

Q ss_pred             CCccEeecCCCcccchhhHHHHHhcccccceeecCCCc
Q 007072          181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP  218 (619)
Q Consensus       181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Np  218 (619)
                      ..|+.|||++|.|++..  ...+.++++|+.|+|++|+
T Consensus        61 ~~L~~LDLs~~~Itd~G--L~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIG--FDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGG--GGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHH--HHHhcCCCCCCEEEeCCCC
Confidence            47999999999988866  4567889999999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.86  E-value=0.0016  Score=63.74  Aligned_cols=64  Identities=11%  Similarity=0.186  Sum_probs=34.6

Q ss_pred             cccccccCccccccCccccc--CCCCCCCCcccccCCC---CCCccchHHHHHHHhCCCCCccccccCC
Q 007072          278 SVTSLDLSNRCIHNLVNKAF--SPAEMPSLSHLNIRGN---PLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f--~~~~L~~L~~LnLs~N---~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      .|+.|+|+.|.|..--...+  ....-+.|+.|+|++|   .|.+.....+...|..-+.|++|.+..+
T Consensus        99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A           99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            45566666666653222111  0113455777777654   3333333345666777778887776544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.98  E-value=0.0045  Score=55.99  Aligned_cols=58  Identities=24%  Similarity=0.342  Sum_probs=46.6

Q ss_pred             eeecccCCCC--ccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072          158 WLELEDADIG--DDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       158 ~L~Ls~~~I~--~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      .++-+++++.  .   +|.++.   ++|+.|+|++|+|+.++  ...+.++++|+.|+|++||+.=-+
T Consensus        12 ~v~Cs~~~L~~~~---vP~~lp---~~l~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           12 LVDCGRRGLTWAS---LPTAFP---VDTTELVLTGNNLTALP--PGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             EEECCSSCCCTTT---SCSCCC---TTCSEEECTTSCCSSCC--TTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             EEEeCCCCCcccc---CCCCCC---cCCCEEECCCCcCCccC--hhhhhhccccCEEEecCCCeeccC
Confidence            5677888877  5   553322   47999999999999998  578999999999999999986433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.81  E-value=0.0066  Score=63.79  Aligned_cols=56  Identities=21%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             cCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072          275 PLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       275 ~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                      .+.+|+.++|.++ +..+....|.  ++++|+.+++..| +..+.    ...|.+|++|+++.+
T Consensus       318 ~c~~L~~i~lp~~-v~~I~~~aF~--~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          318 SCTSLVSIDLPYL-VEEIGKRSFR--GCTSLSNINFPLS-LRKIG----ANAFQGCINLKKVEL  373 (394)
T ss_dssp             TCTTCCEECCCTT-CCEECTTTTT--TCTTCCEECCCTT-CCEEC----TTTBTTCTTCCEEEE
T ss_pred             CCCCCCEEEeCCc-ccEEhHHhcc--CCCCCCEEEECcc-ccEeh----HHHhhCCCCCCEEEE
Confidence            3456666666533 6666666665  6666666666655 55554    345666666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.67  E-value=0.0068  Score=54.79  Aligned_cols=52  Identities=21%  Similarity=0.282  Sum_probs=40.5

Q ss_pred             CcccccccCccccccCcccccCCCCCCCCcccccCCCCCC-ccchHHHHHHHhCC
Q 007072          277 QSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE-QNSVRELLEVLKGF  330 (619)
Q Consensus       277 ~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~-~i~~~~l~~~l~~~  330 (619)
                      .+|+.|||++|.|+.+|...|.  .+++|+.|+|++|++. +=....|..++...
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~   83 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWRCDCRLVPLRAWLAGR   83 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred             cCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence            4789999999999999999997  8999999999999873 33333455555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.28  E-value=0.02  Score=55.80  Aligned_cols=84  Identities=20%  Similarity=0.252  Sum_probs=55.5

Q ss_pred             cccccccCccccccCcccccC--CCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCC--CCCchh----H
Q 007072          278 SVTSLDLSNRCIHNLVNKAFS--PAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG--PLGESA----I  349 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f~--~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~--~l~~~~----~  349 (619)
                      .|+.|+|++|+|..--...+.  ...-+.|+.|+|+.|.|.+.....+...|..-+.|++|+++.+.  .++...    .
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia  150 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  150 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence            455566666665532221110  11468899999999999988888888889999999999998542  455432    3


Q ss_pred             HHhhhcCccccc
Q 007072          350 EILESLPTLCTL  361 (619)
Q Consensus       350 ~il~~lp~L~~L  361 (619)
                      +.+..=++|..|
T Consensus       151 ~aL~~N~tL~~L  162 (197)
T 1pgv_A          151 MAIEENESLLRV  162 (197)
T ss_dssp             HHHHHCSSCCEE
T ss_pred             HHHHhCCCcCeE
Confidence            444444556554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.25  E-value=0.021  Score=59.24  Aligned_cols=133  Identities=18%  Similarity=0.213  Sum_probs=87.4

Q ss_pred             ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccc
Q 007072          172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE  251 (619)
Q Consensus       172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~  251 (619)
                      +....+..+.+|..+.+..+ +..+.  ..++.++.+|+.+.|..+ +....     ...+..+.+|+.+.+.-  +...
T Consensus       208 i~~~~f~~~~~l~~i~~~~~-~~~i~--~~~f~~~~~L~~i~lp~~-v~~I~-----~~aF~~~~~l~~i~l~~--~i~~  276 (379)
T 4h09_A          208 VTAYGFSYGKNLKKITITSG-VTTLG--DGAFYGMKALDEIAIPKN-VTSIG-----SFLLQNCTALKTLNFYA--KVKT  276 (379)
T ss_dssp             ECTTTTTTCSSCSEEECCTT-CCEEC--TTTTTTCSSCCEEEECTT-CCEEC-----TTTTTTCTTCCEEEECC--CCSE
T ss_pred             Eeecccccccccceeeeccc-eeEEc--cccccCCccceEEEcCCC-ccEeC-----ccccceeehhccccccc--ccee
Confidence            34445567788888887665 33333  356778888888888766 33333     23456666676554421  1100


Q ss_pred             ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCC
Q 007072          252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP  331 (619)
Q Consensus       252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~  331 (619)
                      +             +   ...+..+.+|+.++|.++.+..++...|.  ++.+|+.+.|..+ +..+.    ...|.+|+
T Consensus       277 i-------------~---~~aF~~c~~L~~i~l~~~~i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~----~~aF~~C~  333 (379)
T 4h09_A          277 V-------------P---YLLCSGCSNLTKVVMDNSAIETLEPRVFM--DCVKLSSVTLPTA-LKTIQ----VYAFKNCK  333 (379)
T ss_dssp             E-------------C---TTTTTTCTTCCEEEECCTTCCEECTTTTT--TCTTCCEEECCTT-CCEEC----TTTTTTCT
T ss_pred             c-------------c---ccccccccccccccccccccceehhhhhc--CCCCCCEEEcCcc-ccEEH----HHHhhCCC
Confidence            0             0   00122467889999999999999998887  8899999999754 66666    45688999


Q ss_pred             CCccccc
Q 007072          332 CLQSLGV  338 (619)
Q Consensus       332 ~L~sL~l  338 (619)
                      +|+++.+
T Consensus       334 ~L~~i~i  340 (379)
T 4h09_A          334 ALSTISY  340 (379)
T ss_dssp             TCCCCCC
T ss_pred             CCCEEEE
Confidence            9998875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.15  E-value=0.033  Score=58.39  Aligned_cols=150  Identities=13%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccc-ccc
Q 007072          172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTI-NFG  250 (619)
Q Consensus       172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~-n~~  250 (619)
                      |.-..|.+|.+|+++.|.. .|+.++  ..++.++++|+.++|.+| +....     ...+.+|++|+.+.+...- ..+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~--~~aF~~c~~L~~i~lp~~-l~~I~-----~~aF~~c~~L~~i~~p~~l~~i~  132 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIG--EFAFENCSKLEIINIPDS-VKMIG-----RCTFSGCYALKSILLPLMLKSIG  132 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEEC--TTTTTTCTTCCEECCCTT-CCEEC-----TTTTTTCTTCCCCCCCTTCCEEC
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcc--hhHhhCCCCCcEEEeCCC-ceEcc-----chhhcccccchhhcccCceeeec
Confidence            5556677788888888864 366665  457778888888888655 33333     3346667777654432110 011


Q ss_pred             cccccccccccCCCCCCcc----ccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHH
Q 007072          251 EWALGFCGEVYDKDNPSSL----CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV  326 (619)
Q Consensus       251 ~~~l~fc~~~~~~~~p~~l----~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~  326 (619)
                      ..+-..|... ....|...    ...+..+.+|+.++|.++ +..++...|.  ++++|+.+++..| +..+.    ...
T Consensus       133 ~~aF~~~~~~-~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~--~c~~L~~i~l~~~-~~~I~----~~~  203 (394)
T 4fs7_A          133 VEAFKGCDFK-EITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFS--GCGKLKSIKLPRN-LKIIR----DYC  203 (394)
T ss_dssp             TTTTTTCCCS-EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCBCCCCTT-CCEEC----TTT
T ss_pred             ceeeeccccc-ccccCccccccchhhhcccCCCcEEecCCc-cceecccccc--CCCCceEEEcCCC-ceEeC----chh
Confidence            1111111100 00011111    011234567777777644 4567777776  7778888887766 44444    334


Q ss_pred             HhCCCCCcccccc
Q 007072          327 LKGFPCLQSLGVD  339 (619)
Q Consensus       327 l~~~~~L~sL~ld  339 (619)
                      +.+|+.|+.+.+.
T Consensus       204 F~~~~~L~~i~~~  216 (394)
T 4fs7_A          204 FAECILLENMEFP  216 (394)
T ss_dssp             TTTCTTCCBCCCC
T ss_pred             hccccccceeecC
Confidence            6777777777644

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=95.12  E-value=0.011  Score=60.17  Aligned_cols=64  Identities=20%  Similarity=0.321  Sum_probs=44.0

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCCCccchhhhccccc
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGEDKQRSARLTAWF  497 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~~~~~R~a~L~pw~  497 (619)
                      .+++-|+||-+||+.+.++. -|.-     .-.-.++-++||++|||+|=||-+.......+.+....|+
T Consensus       185 n~aRfiNHSC~PN~~~~~~~-~~~~-----~~~i~i~A~RdI~~GEELt~dYg~~~~~~~~~~~~ap~W~  248 (261)
T 2f69_A          185 SLGHKANHSFTPNCIYDMFV-HPRF-----GPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWY  248 (261)
T ss_dssp             CCGGGCEECSSCSEEEEEEE-ETTT-----EEEEEEEESSCBCTTCEEEECCCCCSCCC-----CSCHHH
T ss_pred             cceeeEeeCCCCCeEEEEEE-cCCC-----CcEEEEEECcccCCCCEEEEEcCCccccccccCccCccHH
Confidence            35678999999999998762 2331     2333788999999999999999876655555555555564

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.75  E-value=0.032  Score=57.77  Aligned_cols=128  Identities=13%  Similarity=0.082  Sum_probs=83.6

Q ss_pred             ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccc
Q 007072          172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE  251 (619)
Q Consensus       172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~  251 (619)
                      +....+..+.+|+.+.+..+ ++.++  ..++.++.+|+.+.+..+ +....     ...+.+|++|+.+.+..+... .
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~--~~aF~~~~~l~~i~l~~~-i~~i~-----~~aF~~c~~L~~i~l~~~~i~-~  300 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIG--SFLLQNCTALKTLNFYAK-VKTVP-----YLLCSGCSNLTKVVMDNSAIE-T  300 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEEC--TTTTTTCTTCCEEEECCC-CSEEC-----TTTTTTCTTCCEEEECCTTCC-E
T ss_pred             EccccccCCccceEEEcCCC-ccEeC--ccccceeehhcccccccc-ceecc-----ccccccccccccccccccccc-e
Confidence            55566678888888888766 55554  357788888888888665 33332     345677888887665321110 0


Q ss_pred             ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCC
Q 007072          252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP  331 (619)
Q Consensus       252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~  331 (619)
                      +             +   ..-+..+.+|+.++|..+ +..+....|.  ++++|+.+.+..+ +..+.    ...|.+|+
T Consensus       301 I-------------~---~~aF~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~~-v~~I~----~~aF~~c~  356 (379)
T 4h09_A          301 L-------------E---PRVFMDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPKS-ITLIE----SGAFEGSS  356 (379)
T ss_dssp             E-------------C---TTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCTT-CCEEC----TTTTTTSS
T ss_pred             e-------------h---hhhhcCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECCc-cCEEc----hhHhhCCC
Confidence            0             0   001224668888888754 8888888897  8999999999765 66555    34566765


Q ss_pred             CC
Q 007072          332 CL  333 (619)
Q Consensus       332 ~L  333 (619)
                      .+
T Consensus       357 ~~  358 (379)
T 4h09_A          357 IT  358 (379)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=94.61  E-value=0.026  Score=52.78  Aligned_cols=49  Identities=22%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             cccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCC
Q 007072          429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG  484 (619)
Q Consensus       429 ~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~  484 (619)
                      ++.-|+||-.||+.+..+. .+ +     ...-.++-++||.+|||+|=||-.+..
T Consensus       107 ~aRfiNHSC~PN~~~~~~~-~~-~-----~~~i~~~A~rdI~~GEELt~dY~~~~~  155 (166)
T 3f9x_A          107 LGRLINHSKCGNCQTKLHD-ID-G-----VPHLILIASRDIAAGEELLFDYGDRSK  155 (166)
T ss_dssp             SGGGCEECTTCSEEEEEEE-ET-T-----EEEEEEEESSCBCTTCBCEECCCCCCH
T ss_pred             hhheeecCCCCCeeEEEEE-EC-C-----eeEEEEEECCcCCCCCEEEEEcCCChh
Confidence            3466999999998775432 22 2     566778899999999999999876543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.30  E-value=0.042  Score=57.55  Aligned_cols=130  Identities=11%  Similarity=0.174  Sum_probs=75.8

Q ss_pred             ccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccc
Q 007072          172 LSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGE  251 (619)
Q Consensus       172 i~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~  251 (619)
                      +....+..|.+|+.+.|..+.. .+.  ..++.++++|+.+.+.. .+....     ...+.+|.+|+.+.+.-  +...
T Consensus       256 i~~~aF~~c~~L~~i~lp~~~~-~I~--~~aF~~c~~L~~i~l~~-~i~~I~-----~~aF~~c~~L~~i~lp~--~v~~  324 (394)
T 4gt6_A          256 IETHAFDSCAYLASVKMPDSVV-SIG--TGAFMNCPALQDIEFSS-RITELP-----ESVFAGCISLKSIDIPE--GITQ  324 (394)
T ss_dssp             ECTTTTTTCSSCCEEECCTTCC-EEC--TTTTTTCTTCCEEECCT-TCCEEC-----TTTTTTCTTCCEEECCT--TCCE
T ss_pred             cccceeeecccccEEecccccc-eec--CcccccccccccccCCC-cccccC-----ceeecCCCCcCEEEeCC--cccE
Confidence            5556778899999999976643 333  36788999999999964 344333     33466777777665431  1100


Q ss_pred             ccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCC
Q 007072          252 WALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFP  331 (619)
Q Consensus       252 ~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~  331 (619)
                      ++                ..-+..+.+|+.+.|..+ +..+....|.  ++++|+.+.+.+|...       ...+..+.
T Consensus       325 I~----------------~~aF~~C~~L~~i~ip~s-v~~I~~~aF~--~C~~L~~i~~~~~~~~-------~~~~~~~~  378 (394)
T 4gt6_A          325 IL----------------DDAFAGCEQLERIAIPSS-VTKIPESAFS--NCTALNNIEYSGSRSQ-------WNAISTDS  378 (394)
T ss_dssp             EC----------------TTTTTTCTTCCEEEECTT-CCBCCGGGGT--TCTTCCEEEESSCHHH-------HHTCBCCC
T ss_pred             eh----------------HhHhhCCCCCCEEEECcc-cCEEhHhHhh--CCCCCCEEEECCceee-------hhhhhccC
Confidence            00                001223556777777543 6777777776  7777777777776421       12355666


Q ss_pred             CCccccc
Q 007072          332 CLQSLGV  338 (619)
Q Consensus       332 ~L~sL~l  338 (619)
                      +|++|.+
T Consensus       379 ~L~~i~i  385 (394)
T 4gt6_A          379 GLQNLPV  385 (394)
T ss_dssp             CC-----
T ss_pred             CCCEEEe
Confidence            6666654

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=93.82  E-value=0.028  Score=49.95  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      -+|+.|+||-+||+....   .+.      ..--.++-++||.+|||+|=||-...
T Consensus        63 ~~~~~~NHsc~pN~~~~~---~~~------~~~~~~~A~rdI~~GeElt~~Y~~~~  109 (119)
T 1n3j_A           63 GFGAIFNHSKDPNARHEL---TAG------LKRMRIFTIKPIAIGEEITISYGDDY  109 (119)
T ss_dssp             SSHHHHHSCSSCCCEEEE---CSS------SSCEEEEECSCBCSSEEECCCCCCCC
T ss_pred             CceeeeccCCCCCeeEEE---ECC------CeEEEEEEccccCCCCEEEEecCchh
Confidence            478999999999998753   222      12234677999999999999986543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.81  E-value=0.085  Score=55.23  Aligned_cols=125  Identities=15%  Similarity=0.222  Sum_probs=82.1

Q ss_pred             CccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccccccc
Q 007072          182 DLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVY  261 (619)
Q Consensus       182 ~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~  261 (619)
                      .+..+.+- +.+..+.  ..++.++.+|+.+.|.++-.. .     ....+..+++|+.+.+.-  ....+         
T Consensus       243 ~~~~~~ip-~~v~~i~--~~aF~~c~~L~~i~lp~~~~~-I-----~~~aF~~c~~L~~i~l~~--~i~~I---------  302 (394)
T 4gt6_A          243 EDPAFKIP-NGVARIE--THAFDSCAYLASVKMPDSVVS-I-----GTGAFMNCPALQDIEFSS--RITEL---------  302 (394)
T ss_dssp             CCSEEECC-TTEEEEC--TTTTTTCSSCCEEECCTTCCE-E-----CTTTTTTCTTCCEEECCT--TCCEE---------
T ss_pred             ccceEEcC-CcceEcc--cceeeecccccEEecccccce-e-----cCcccccccccccccCCC--ccccc---------
Confidence            33444443 3344444  357889999999999776532 2     233467788888666531  11000         


Q ss_pred             CCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          262 DKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       262 ~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                          +.   ..+..+.+|+.++|..+ +..+....|.  ++.+|+.+.|..+ +..+.    ...|.+|++|+++.+..+
T Consensus       303 ----~~---~aF~~c~~L~~i~lp~~-v~~I~~~aF~--~C~~L~~i~ip~s-v~~I~----~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          303 ----PE---SVFAGCISLKSIDIPEG-ITQILDDAFA--GCEQLERIAIPSS-VTKIP----ESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             ----CT---TTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEECTT-CCBCC----GGGGTTCTTCCEEEESSC
T ss_pred             ----Cc---eeecCCCCcCEEEeCCc-ccEehHhHhh--CCCCCCEEEECcc-cCEEh----HhHhhCCCCCCEEEECCc
Confidence                00   11224678899999764 8888888887  8999999999654 66666    456899999999987653

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=91.99  E-value=0.13  Score=50.75  Aligned_cols=48  Identities=21%  Similarity=0.317  Sum_probs=38.0

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG  482 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~  482 (619)
                      .++.-|+||-+||+.+.++..  .+     ..--.+|-++||.+|||+|=||-+.
T Consensus       145 n~aRfiNHSC~PN~~~~~~~~--~~-----~~~i~~~A~RdI~~GEELT~dY~~~  192 (222)
T 3ope_A          145 NEARFINHSCDPNCEMQKWSV--NG-----VYRIGLYALKDMPAGTELTYDYNFH  192 (222)
T ss_dssp             CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCBCEECTTSS
T ss_pred             ccceeeccCCCCCeEeEEEEE--CC-----eEEEEEEECCccCCCCEEEEECCCc
Confidence            345679999999999876532  22     5666789999999999999998754

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=91.05  E-value=0.18  Score=50.03  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG  482 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~  482 (619)
                      .++.-|+||-+||+.+.++..  .+     ..--.+|-++||.+|||+|=||-..
T Consensus       164 n~aRfiNHSC~PN~~~~~~~~--~~-----~~~i~~~A~RdI~~GEELT~dY~~~  211 (232)
T 3ooi_A          164 NYARFMNHCCQPNCETQKWSV--NG-----DTRVGLFALSDIKAGTELTFNYNLE  211 (232)
T ss_dssp             CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCBCEECCTTC
T ss_pred             cccccccccCCCCeEEEEEEE--CC-----ceEEEEEECCccCCCCEEEEECCCC
Confidence            455779999999998876432  23     4566789999999999999998654

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=90.80  E-value=0.2  Score=48.53  Aligned_cols=49  Identities=22%  Similarity=0.463  Sum_probs=36.8

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      .+++-|+||-+||+.+..+..  .+     ..--+++-++||.+|||+|=||-...
T Consensus       123 n~arfiNHSC~PN~~~~~~~~--~g-----~~~i~i~A~rdI~~GEELt~dY~~~~  171 (192)
T 2w5y_A          123 NAARFINHSCEPNCYSRVINI--DG-----QKHIVIFAMRKIYRGEELTYDYKFPI  171 (192)
T ss_dssp             CGGGGCEECSSCSEEEEEEEE--TT-----EEEEEEEESSCBCTTCEEEECCCC--
T ss_pred             ChhHhhccCCCCCEEEEEEEE--CC-----cEEEEEEECcccCCCCEEEEEcCCch
Confidence            456679999999998754321  33     45567899999999999999997654

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=90.77  E-value=0.19  Score=50.73  Aligned_cols=47  Identities=19%  Similarity=0.265  Sum_probs=36.7

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG  484 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~  484 (619)
                      ..++-|+||=.||+.++.+    .+      .--.++-++||.+|||+|-||....-
T Consensus       175 ~~ar~iNHSC~PN~~~~~~----~~------~~i~v~A~rdI~~GEElt~~Y~~~~~  221 (247)
T 3rq4_A          175 GPAAFINHDCKPNCKFVPA----DG------NAACVKVLRDIEPGDEVTCFYGEGFF  221 (247)
T ss_dssp             SGGGGCEECSSCSEEEEEE----TT------TEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred             chhhhcCCCCCCCEEEEEe----CC------CEEEEEECCcCCCCCEEEEecCchhc
Confidence            5688999999999976543    22      23457889999999999999986543

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=90.36  E-value=0.19  Score=51.23  Aligned_cols=49  Identities=24%  Similarity=0.279  Sum_probs=37.6

Q ss_pred             cccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       429 ~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      +++-|+||-+|||.+.++ ..|..     ...-+++-++||.+|||+|-||=+..
T Consensus       240 ~ar~iNHsc~pN~~~~~~-~~~~~-----~~~~~~~a~r~I~~geElt~~Yg~~~  288 (293)
T 1h3i_A          240 LGHKANHSFTPNCIYDMF-VHPRF-----GPIKCIRTLRAVEADEELTVAYGYDH  288 (293)
T ss_dssp             CGGGSEEESSCSEEEEEE-EETTT-----EEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred             ceeeeccCCCCCeEEEEE-EcCCC-----CcEEEEEECCccCCCCEEEEecCCCC
Confidence            577899999999998775 33432     22236889999999999999986554

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=89.27  E-value=0.22  Score=51.43  Aligned_cols=53  Identities=21%  Similarity=0.264  Sum_probs=37.4

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      .++.-|+||-+||+.+.+.+.-   ..+....--.+|-++||.+|||+|=||-.+.
T Consensus       219 N~arfiNHSC~PN~~~~~~~~~---~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~  271 (302)
T 1ml9_A          219 GPTRFINHSCDPNMAIFARVGD---HADKHIHDLALFAIKDIPKGTELTFDYVNGL  271 (302)
T ss_dssp             CGGGGCEECSSCSEEEEEEESS---GGGGGGCEEEEEESSCBCTTCEEEECTTC--
T ss_pred             CHHHhcccCCCCCeeEEEEEec---cCCCCceEEEEEECCCcCCCCEEEEEECCCc
Confidence            4677799999999987643211   0011234567899999999999999997654

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=89.10  E-value=0.33  Score=50.07  Aligned_cols=53  Identities=15%  Similarity=0.140  Sum_probs=38.8

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      .++.-|+||-+||+.+.+.+.- .  .+.+..--.+|-++||.+|||+|=||-...
T Consensus       212 N~aRfiNHSC~PN~~~~~v~~~-~--~~~~~~~i~~~A~rdI~~GEELt~dY~~~~  264 (299)
T 1mvh_A          212 DVSRFFNHSCSPNIAIYSAVRN-H--GFRTIYDLAFFAIKDIQPLEELTFDYAGAK  264 (299)
T ss_dssp             CGGGGCEECSSCSEEEEEEESC-T--TCTTSCEEEEEESSCBCTTCBCEECCCTTS
T ss_pred             ChhheEeecCCCCeEEEEEEee-c--CCCCceEEEEEEccCcCCCCEEEEEcCCcc
Confidence            4667799999999998765321 1  111244567899999999999999997543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=88.14  E-value=0.27  Score=52.85  Aligned_cols=84  Identities=19%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhhhceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCc
Q 007072          395 ADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDE  474 (619)
Q Consensus       395 ~~rV~~~mWk~~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gde  474 (619)
                      +-+++..+.  +++|.+....   ..++=.-+--.+|.++||-.||+... |    .+     .. -+++-++||++|||
T Consensus       172 ~~~~~~~~~--~N~f~i~~~~---~~~~g~~l~~~~s~~NHsC~PN~~~~-~----~~-----~~-~~~~a~r~I~~GeE  235 (429)
T 3qwp_A          172 LFEAFAKVI--CNSFTICNAE---MQEVGVGLYPSISLLNHSCDPNCSIV-F----NG-----PH-LLLRAVRDIEVGEE  235 (429)
T ss_dssp             HHHHHHHHH--HHCEEEECTT---SCEEEEEECTTGGGCEECSSCSEEEE-E----ET-----TE-EEEEECSCBCTTCE
T ss_pred             HHHHHHHHH--hcCccccccc---cccceEEEchhhHhhCcCCCCCeEEE-E----eC-----CE-EEEEEeeeECCCCE
Confidence            345555555  4467665432   11211222256899999999999874 2    12     22 35778999999999


Q ss_pred             cccccccCCCCccchhhhcc
Q 007072          475 CTRDFLYGIGEDKQRSARLT  494 (619)
Q Consensus       475 vTRD~~~~~~~~~~R~a~L~  494 (619)
                      +|=+|.....+...|...|.
T Consensus       236 l~isY~~~~~~~~~R~~~L~  255 (429)
T 3qwp_A          236 LTICYLDMLMTSEERRKQLR  255 (429)
T ss_dssp             EEECCSCSSCCHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHh
Confidence            99999876666667776664

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=87.92  E-value=0.33  Score=50.15  Aligned_cols=52  Identities=21%  Similarity=0.314  Sum_probs=38.3

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYG  482 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~  482 (619)
                      .++.-|+||-+||+.+.+++.--   .+.+..--.+|-++||.+|||+|=||-+.
T Consensus       214 N~aRfiNHSC~PN~~~~~v~~~~---~d~~~~~i~~~A~rdI~~GEELt~dY~~~  265 (300)
T 2r3a_A          214 NVSHFVNHSCDPNLQVFNVFIDN---LDTRLPRIALFSTRTINAGEELTFDYQMK  265 (300)
T ss_dssp             CGGGGCEECSSCSEEEEEEESSC---CCTTSCEEEEEESSCBCTTCEEEECGGGS
T ss_pred             ChHHheecCCCCCEEEEEEEecc---CCCCceEEEEEEccCCCCCCEEEEECCCC
Confidence            36678999999999886654321   11123455788899999999999999754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=87.84  E-value=0.33  Score=53.24  Aligned_cols=94  Identities=15%  Similarity=0.109  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHhhhceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCC--CCC---ceEEEEEeeccc
Q 007072          394 LADRVLSAMWLYLMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGK--LSS---AVSFSILWPIQN  468 (619)
Q Consensus       394 ~~~rV~~~mWk~~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~--~~~---~~sySllwPi~d  468 (619)
                      .+-+++..++  +++|.+.... + ..++=.-+--.+|.|+||-.||+.+.   |-....  ..+   ...--.++.++|
T Consensus       169 ~l~~~~~~~~--~N~f~i~~~~-g-~~~~g~gl~p~~s~~NHSC~PN~~~~---~~~~~~~~~~~~~~~~~~~~v~A~rd  241 (490)
T 3n71_A          169 YISHIFGVIN--CNGFTLSDQR-G-LQAVGVGIFPNLGLVNHDCWPNCTVI---FNNGNHEAVKSMFHTQMRIELRALGK  241 (490)
T ss_dssp             HHHHHHHHHH--TTEEEEECTT-S-CSEEEEEECTTGGGCEECSSCSEEEE---EECCCCSSSCCCGGGSCEEEEEESSC
T ss_pred             HHHHHHHHHh--ccCcccccCC-C-CccceEEEchhhhhcccCCCCCeeEE---ecCCccccccccccccceEEEEECCC
Confidence            3445555554  4566665431 1 11222223367899999999999853   222110  000   012567889999


Q ss_pred             cCCCCccccccccCCCCccchhhhcc
Q 007072          469 VYKRDECTRDFLYGIGEDKQRSARLT  494 (619)
Q Consensus       469 i~~gdevTRD~~~~~~~~~~R~a~L~  494 (619)
                      |+.|||+|=+|.....+...|...|.
T Consensus       242 I~~GEEltisY~~~~~~~~~R~~~L~  267 (490)
T 3n71_A          242 ISEGEELTVSYIDFLHLSEERRRQLK  267 (490)
T ss_dssp             BCTTCBCEECSSCSCSCHHHHHHHHH
T ss_pred             CCCCCEEEEeecCCCCCHHHHHHHHH
Confidence            99999999999876655666776664

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=87.61  E-value=0.35  Score=49.70  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=38.1

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      .++.-|+||-+||+.+.++..  .+    ...--.+|-++||.+|||+|-||-...
T Consensus       204 N~arfiNHSC~PN~~~~~~~~--~~----~~~~i~~~A~rdI~~GEELt~dY~~~~  253 (290)
T 3bo5_A          204 NIGRFLNHSCEPNLLMIPVRI--DS----MVPKLALFAAKDIVPEEELSYDYSGRY  253 (290)
T ss_dssp             CGGGGCEECSSCSEEEEEEES--SS----SSCEEEEEESSCBCTTCEEEECTTSCT
T ss_pred             CchheeeecCCCCEEEEEEEe--CC----CceEEEEEEccccCCCCEEEEECCCcc
Confidence            566779999999999876532  11    133457889999999999999997543

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=87.05  E-value=0.46  Score=48.74  Aligned_cols=51  Identities=10%  Similarity=0.128  Sum_probs=38.0

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccccc
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY  481 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~  481 (619)
                      .++.-|+||-+||+.+..++..-.   +.+..--.+|-++||.+|||+|=||-.
T Consensus       215 N~aRFiNHSC~PN~~~~~v~~~~~---d~~~~~i~~~A~RdI~~GEELT~dYg~  265 (287)
T 3hna_A          215 NVSRFINHHCEPNLVPVRVFMAHQ---DLRFPRIAFFSTRLIEAGEQLGFDYGE  265 (287)
T ss_dssp             CGGGGCEECSSCSEEEEEEESSCC---CTTCCEEEEEESSCBCTTCBCEECCCH
T ss_pred             CchheeeecCCCCceeEEEEEecC---CCCceeEEEEEcceeCCCCeEEEeCCC
Confidence            567778999999998766543221   112456678889999999999999853

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=86.82  E-value=0.36  Score=49.37  Aligned_cols=46  Identities=13%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      ..++-|+||=+||+.++.     .+     ..--.++-++||++|||+|-||....
T Consensus       204 ~~arfiNHSC~PN~~~~~-----~~-----~~~i~i~A~RdI~~GEELt~~Y~~~~  249 (273)
T 3s8p_A          204 GPAAFINHDCRPNCKFVS-----TG-----RDTACVKALRDIEPGEEISCYYGDGF  249 (273)
T ss_dssp             SGGGGCEECSSCSEEEEE-----EE-----TTEEEEEESSCBCTTCBCEECCCTTT
T ss_pred             chHHhhCCCCCCCeEEEE-----cC-----CCEEEEEECceeCCCCEEEEecCchh
Confidence            457889999999998631     22     11346888999999999999997554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=85.39  E-value=0.46  Score=51.30  Aligned_cols=75  Identities=19%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             hceEEcccccccCcceeeEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCCC
Q 007072          406 LMTYRLANEEKIDETSVWYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIGE  485 (619)
Q Consensus       406 ~~tY~l~~~~~~~~~p~WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~~  485 (619)
                      +++|.+....   ..++=.-+--.+|.++||-.||+... |    .+     .. -.++.++||..|||+|=+|.....+
T Consensus       181 ~N~f~i~~~~---~~~~g~gl~p~~s~~NHsC~PN~~~~-~----~~-----~~-~~~~a~r~I~~Geel~i~Y~~~~~~  246 (433)
T 3qww_A          181 CNGFTIEDEE---LSHLGSAIFPDVALMNHSCCPNVIVT-Y----KG-----TL-AEVRAVQEIHPGDEVFTSYIDLLYP  246 (433)
T ss_dssp             HHCEEEECTT---CCEEEEEECTTGGGSEECSSCSEEEE-E----ET-----TE-EEEEESSCBCTTCEEEECCSCTTSC
T ss_pred             CCceecccCC---ccceeEEecccccccCCCCCCCceEE-E----cC-----CE-EEEEeccCcCCCCEEEEeecCCcCC
Confidence            4567665432   11211223357899999999998763 2    22     12 3688999999999999999876655


Q ss_pred             ccchhhhcc
Q 007072          486 DKQRSARLT  494 (619)
Q Consensus       486 ~~~R~a~L~  494 (619)
                      ...|...|.
T Consensus       247 ~~~R~~~L~  255 (433)
T 3qww_A          247 TEDRNDRLR  255 (433)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666776664

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=83.55  E-value=0.77  Score=42.64  Aligned_cols=48  Identities=10%  Similarity=0.012  Sum_probs=35.0

Q ss_pred             eEecccc-------ccccccCCCC---CceeeceeeccCCCCCCceEEEEEeeccccCCCCcccccccc
Q 007072          423 WYVMDEL-------GSAVRHSDEP---NFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLY  481 (619)
Q Consensus       423 WYvmDE~-------GsaI~HSd~P---N~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~  481 (619)
                      ||+.|-.       +.-|+||-+|   |+.++..    .+       --.++-+|||.+|||+|=||-.
T Consensus        86 ~~~IDa~~~~~gn~~RfINhSc~p~eqNl~~~~~----~~-------~I~~~A~RdI~~GEEL~~dY~~  143 (149)
T 2qpw_A           86 WMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEI----NR-------AIYYKTLKPIAPGEELLVWYNG  143 (149)
T ss_dssp             EEEEECSSGGGSCGGGGCEECBTTBTCCEEEEEE----TT-------EEEEEESSCBCTTCBCEECCCC
T ss_pred             eEEEeCCCCCCCcceeeeeccCChhhcCEEEEEE----CC-------EEEEEEccCCCCCCEEEEccCC
Confidence            6666654       4568999999   8876321    22       2257889999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	619
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 23/168 (13%)

Query: 178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPK 237
                L  + +    + T+   +       +L  L L+ N    K       ++      
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGN----KITKVDAASLKGLNNL 197

Query: 238 LEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRP-----LQSVTSLDLSNRCIHNL 292
            ++  S  +I+  +           + + ++  L   P      + +  + L N  I  +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 293 VNKAFSP----AEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
            +  F P     +  S S +++  NP++   ++        F C+   
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-----STFRCVYVR 300

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 18/155 (11%), Positives = 46/155 (29%), Gaps = 6/155 (3%)

Query: 213 WLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLR 272
                P  +     ++             +      F          + D          
Sbjct: 305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 364

Query: 273 DRPLQSVTSLDLSNRCIHNLVNKAFSPA--EMPSLSHLNIRGNPLEQNSVRELLEVLKGF 330
            +P   +  L L++  + +    + +       SL  L++  N L    + +L+E ++  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 331 PC-LQSL---GVDIPGPLGESAIEILESLPTLCTL 361
            C L+ L    +     + +    + +  P+L  +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 32/193 (16%)

Query: 165 DIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD 224
              ++ +  +       +L  LSL GN+L+ +  +      L NL  L L NN    +  
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANN----QIS 254

Query: 225 HCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDL 284
           +    + L    +L++  +  +       L     +   +N          L+++T L L
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 285 SNRCI------------------HNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEV 326
               I                  +N V+   S A + +++ L+   N +        L  
Sbjct: 315 YFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD------LTP 368

Query: 327 LKGFPCLQSLGVD 339
           L     +  LG++
Sbjct: 369 LANLTRITQLGLN 381

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 30/221 (13%)

Query: 116 TDIEEVDAVKGVLHENGTKSNVEDILESEIHNATEKGDGTVKWLELEDADIGDDMLLSLN 175
             I   DA    + +N  K +V D +       T+    ++  +   ++DI     +   
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAV-------TQNELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 176 LSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC 235
                P++  L L GNKL  ++ +        NL+ L        K  D      + +  
Sbjct: 66  ---YLPNVTKLFLNGNKLTDIKPL-------ANLKNLGWLFLDENKVKDLSSLKDLKKLK 115

Query: 236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK 295
                +N    I  G   L     +Y  +N  +       L  + +L L +  I ++V  
Sbjct: 116 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP- 173

Query: 296 AFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
               A +  L +L +  N +        L  L G   L  L
Sbjct: 174 ---LAGLTKLQNLYLSKNHISD------LRALAGLKNLDVL 205

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 23/153 (15%), Positives = 43/153 (28%), Gaps = 31/153 (20%)

Query: 184 QALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNS 243
           + L L    L  +      + +L  +  L L++N +            L     LE+  +
Sbjct: 1   RVLHLAHKDLTVLC----HLEQLLLVTHLDLSHNRLRALPPA------LAALRCLEVLQA 50

Query: 244 NFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMP 303
           +         +                        +  L L N  +             P
Sbjct: 51  SDNALENVDGVANL-------------------PRLQELLLCNNRLQQSAAIQ-PLVSCP 90

Query: 304 SLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSL 336
            L  LN++GN L Q        + +  P + S+
Sbjct: 91  RLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSI 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	619
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.32
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.29
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.18
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.14
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.07
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.97
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.93
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.67
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.44
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.85
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.21
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	96.0
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	94.51
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	92.63
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	92.44

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.7e-15  Score=136.92  Aligned_cols=134  Identities=18%  Similarity=0.167  Sum_probs=94.7

Q ss_pred             CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccc
Q 007072          178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC  257 (619)
Q Consensus       178 ~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc  257 (619)
                      .++.+++.|+|++|+|..++   .....+++|+.|+||+|.+....  +                               
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~---~~~~~l~~L~~L~Ls~N~i~~l~--~-------------------------------   58 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSDNEIRKLD--G-------------------------------   58 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCC---CGGGGTTCCSEEECCSSCCCEEC--C-------------------------------
T ss_pred             cCcCcCcEEECCCCCCCccC---ccccccccCCEEECCCCCCCccC--C-------------------------------
Confidence            45667777888888777775   34466777888888888766543  0                               


Q ss_pred             ccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcccc
Q 007072          258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG  337 (619)
Q Consensus       258 ~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~  337 (619)
                                     ...+.+|+.|+|++|+|..++...|.  .+++|+.|++++|.|.+++.   ...+.++++|++|+
T Consensus        59 ---------------~~~l~~L~~L~ls~N~i~~l~~~~~~--~l~~L~~L~L~~N~i~~~~~---l~~l~~l~~L~~L~  118 (162)
T d1a9na_          59 ---------------FPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLVELGD---LDPLASLKSLTYLC  118 (162)
T ss_dssp             ---------------CCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEE
T ss_pred             ---------------cccCcchhhhhcccccccCCCccccc--cccccccceecccccccccc---ccccccccccchhh
Confidence                           11256677777788888777776665  67788888888888777651   13467778888888


Q ss_pred             ccCCCC--CCchhHHHhhhcCccccccCccch
Q 007072          338 VDIPGP--LGESAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       338 ld~p~~--l~~~~~~il~~lp~L~~LNg~~~s  367 (619)
                      +..|+.  +..+...+++.+|+|+.|||..++
T Consensus       119 l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~  150 (162)
T d1a9na_         119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  150 (162)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCccccccchHHHHHHHCCCcCeeCCCCCC
Confidence            777653  223335688999999999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.5e-14  Score=139.64  Aligned_cols=153  Identities=20%  Similarity=0.180  Sum_probs=105.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|+|++|.|..   ++...+.++++|+.|+|++|+|+.++    .+..+++|+.|+|++|++.....      .+.
T Consensus        31 ~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~L~~N~l~~l~----~~~~l~~L~~L~Ls~N~l~~~~~------~~~   97 (266)
T d1p9ag_          31 KDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKLQ----VDGTLPVLGTLDLSHNQLQSLPL------LGQ   97 (266)
T ss_dssp             TTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCEEE----CCSCCTTCCEEECCSSCCSSCCC------CTT
T ss_pred             cCCCEEECcCCcCCC---cCHHHhhccccccccccccccccccc----ccccccccccccccccccccccc------ccc
Confidence            468899999999998   77788889999999999999999987    35789999999999999886542      367


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.|+++......-..                 .....+.++..|++++|.+..+|+..|.  .+++|+.|++++|
T Consensus        98 ~l~~L~~L~l~~~~~~~~~~-----------------~~~~~l~~l~~L~l~~n~l~~l~~~~~~--~l~~l~~l~l~~N  158 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTSLPL-----------------GALRGLGELQELYLKGNELKTLPPGLLT--PTPKLEKLSLANN  158 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCS-----------------STTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTS
T ss_pred             cccccccccccccccceeec-----------------cccccccccccccccccccceecccccc--ccccchhcccccc
Confidence            89999999987644321000                 0111344555555555555555555554  5555555555555


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .|..+.    ...+.++++|++|++..|.
T Consensus       159 ~l~~~~----~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         159 NLTELP----AGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             CCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred             cccccC----ccccccccccceeecccCC
Confidence            555554    2334555555555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=7.6e-13  Score=125.49  Aligned_cols=160  Identities=20%  Similarity=0.267  Sum_probs=124.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|.+++|+|.+  +..   ...+++|+.|+|++|+|++++.    ++++++|+.|++++|.+....       .+.
T Consensus        40 ~~l~~L~l~~~~i~~--l~~---l~~l~nL~~L~Ls~N~l~~~~~----l~~l~~L~~L~l~~n~~~~~~-------~l~  103 (199)
T d2omxa2          40 DQVTTLQADRLGIKS--IDG---VEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADIT-------PLA  103 (199)
T ss_dssp             TTCCEEECTTSCCCC--CTT---GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG-------GGT
T ss_pred             cCCCEEECCCCCCCC--ccc---cccCCCcCcCccccccccCccc----ccCCccccccccccccccccc-------ccc
Confidence            567899999999988  322   3579999999999999999873    889999999999999987664       157


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+++|+.++++.+....                  . .....+.+|+.|++++|.+..++.  +.  .+++|+.|++++|
T Consensus       104 ~l~~L~~L~l~~~~~~~------------------~-~~~~~l~~L~~L~l~~n~l~~~~~--l~--~~~~L~~L~l~~n  160 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITD------------------I-DPLKNLTNLNRLELSSNTISDISA--LS--GLTSLQQLNFSSN  160 (199)
T ss_dssp             TCTTCSEEECCSSCCCC------------------C-GGGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSS
T ss_pred             ccccccccccccccccc------------------c-cccchhhhhHHhhhhhhhhccccc--cc--ccccccccccccc
Confidence            88999988876433221                  0 112347889999999999988763  33  7999999999999


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      .+.+++      .+.++++|+.|++..+. ++  +...+..+++|+.|
T Consensus       161 ~l~~l~------~l~~l~~L~~L~ls~N~-i~--~i~~l~~L~~L~~L  199 (199)
T d2omxa2         161 QVTDLK------PLANLTTLERLDISSNK-VS--DISVLAKLTNLESL  199 (199)
T ss_dssp             CCCCCG------GGTTCTTCCEEECCSSC-CC--CCGGGGGCTTCSEE
T ss_pred             cccCCc------cccCCCCCCEEECCCCC-CC--CCccccCCCCCCcC
Confidence            998876      37899999999999885 32  23345677777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1.8e-12  Score=123.98  Aligned_cols=143  Identities=24%  Similarity=0.296  Sum_probs=95.4

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|.+++|+|..  +.+   ...+++|+.|+|++|+|++++.    +.+|++|+.|+|++|++....       .+.
T Consensus        46 ~~L~~L~l~~~~i~~--l~~---l~~l~~L~~L~L~~n~i~~l~~----~~~l~~L~~L~l~~n~i~~l~-------~l~  109 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS--VQG---IQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLS-------SLK  109 (210)
T ss_dssp             HTCCEEECTTSCCCC--CTT---GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGG-------GGT
T ss_pred             cCccEEECcCCCCCC--chh---HhhCCCCCEEeCCCccccCccc----cccCccccccccccccccccc-------ccc
Confidence            468899999999988  333   3579999999999999999873    578999999999999987654       167


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                      .+|+|+.|+++.+....               ..    ....+.+|+.+++++|.+..++.  ++  .+++|+.|++++|
T Consensus       110 ~l~~L~~L~l~~~~~~~---------------~~----~l~~l~~l~~l~~~~n~l~~~~~--~~--~l~~L~~l~l~~n  166 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISD---------------IN----GLVHLPQLESLYLGNNKITDITV--LS--RLTKLDTLSLEDN  166 (210)
T ss_dssp             TCTTCCEEECTTSCCCC---------------CG----GGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECCSS
T ss_pred             ccccccccccccccccc---------------cc----ccccccccccccccccccccccc--cc--ccccccccccccc
Confidence            79999999886543321               00    11124455556666665554432  11  4555666666666


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCC
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      .+.++.      -+.++++|+.|++..+
T Consensus       167 ~l~~i~------~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         167 QISDIV------PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CCCCCG------GGTTCTTCCEEECCSS
T ss_pred             cccccc------cccCCCCCCEEECCCC
Confidence            555543      1455566666665555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=130.27  Aligned_cols=191  Identities=19%  Similarity=0.124  Sum_probs=125.3

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecC-CCcccccccchhhhHHh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLN-NNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls-~Npi~~~~~~~~~~~il  232 (619)
                      ..+++|+|++|+|..   +|...+.++++|+.|++++|+|..++  ...+.+++.++.|..+ .|.+....     ...+
T Consensus        32 ~~~~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~ls~n~l~~i~--~~~~~~~~~~~~l~~~~~~~~~~l~-----~~~~  101 (284)
T d1ozna_          32 AASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVD-----PATF  101 (284)
T ss_dssp             TTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCC-----TTTT
T ss_pred             CCCCEEECcCCcCCC---CCHHHhhccccccccccccccccccc--ccccccccccccccccccccccccc-----chhh
Confidence            356789999999887   77777888899999999999888776  3456666666666543 44444333     2235


Q ss_pred             hcCCccccccccccccccccc--cccccccc----CCCCCCccc-cCCCcCCcccccccCccccccCcccccCCCCCCCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWA--LGFCGEVY----DKDNPSSLC-LRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSL  305 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~--l~fc~~~~----~~~~p~~l~-~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L  305 (619)
                      .++++|+.|+++..+...-..  ..++....    ..+.-..+. .....+.+|+.|+|++|.|..+++..|.  ++++|
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~--~l~~L  179 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSL  179 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTC
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc--ccccc
Confidence            667777777665543321111  11111000    000111111 1123466888999999999999888887  88999


Q ss_pred             cccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          306 SHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       306 ~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      ++|++++|.+..+.    +..|.++++|++|++..+..-+. ....+..+++|+.|
T Consensus       180 ~~l~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~L~~L  230 (284)
T d1ozna_         180 DRLLLHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYL  230 (284)
T ss_dssp             CEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEE
T ss_pred             chhhhhhccccccC----hhHhhhhhhcccccccccccccc-cccccccccccCEE
Confidence            99999999988776    55688889999999888765332 23556677777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=7.2e-13  Score=124.94  Aligned_cols=126  Identities=17%  Similarity=0.175  Sum_probs=93.1

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccc-hhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLET-VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGC  235 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~-~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~l  235 (619)
                      ++++.+++++..   +|.++.   ++++.|+|++|+|.. ++  ...+.++++|+.|+|++|.+....++     .    
T Consensus        11 ~~v~Cs~~~L~~---iP~~lp---~~l~~L~Ls~N~i~~~~~--~~~f~~l~~L~~L~L~~N~i~~~~~~-----~----   73 (192)
T d1w8aa_          11 TTVDCTGRGLKE---IPRDIP---LHTTELLLNDNELGRISS--DGLFGRLPHLVKLELKRNQLTGIEPN-----A----   73 (192)
T ss_dssp             TEEECTTSCCSS---CCSCCC---TTCSEEECCSCCCCSBCC--SCSGGGCTTCCEEECCSSCCCCBCTT-----T----
T ss_pred             CEEEEeCCCcCc---cCCCCC---CCCCEEEeCCCCCccccc--ccccCCCceEeeeecccccccccccc-----c----
Confidence            357788888888   776654   688999999999865 33  34678899999999999987765422     1    


Q ss_pred             CcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCC
Q 007072          236 PKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       236 P~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i  315 (619)
                                                           ...+.+|+.|+|++|+|..+|+..|.  ++++|+.|+|++|.|
T Consensus        74 -------------------------------------~~~~~~L~~L~Ls~N~l~~l~~~~F~--~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          74 -------------------------------------FEGASHIQELQLGENKIKEISNKMFL--GLHQLKTLNLYDNQI  114 (192)
T ss_dssp             -------------------------------------TTTCTTCCEEECCSCCCCEECSSSST--TCTTCCEEECCSSCC
T ss_pred             -------------------------------------cccccccceeeeccccccccCHHHHh--CCCcccccccCCccc
Confidence                                                 11356777778888888888777776  788888888888888


Q ss_pred             CccchHHHHHHHhCCCCCccccccCCC
Q 007072          316 EQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       316 ~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      ..++    ...|.++++|++|++..|.
T Consensus       115 ~~i~----~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         115 SCVM----PGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CEEC----TTSSTTCTTCCEEECTTCC
T ss_pred             cccC----HHHhcCCcccccccccccc
Confidence            7777    4556777777777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.3e-13  Score=122.18  Aligned_cols=129  Identities=23%  Similarity=0.343  Sum_probs=104.2

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|+|++|+|..   ++ +++..+++|+.|+|++|.|++++    .+.++++|+.|+|++|.+....++     ++
T Consensus        17 ~~~lr~L~L~~n~I~~---i~-~~~~~l~~L~~L~Ls~N~i~~l~----~~~~l~~L~~L~ls~N~i~~l~~~-----~~   83 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV---IE-NLGATLDQFDAIDFSDNEIRKLD----GFPLLRRLKTLLVNNNRICRIGEG-----LD   83 (162)
T ss_dssp             TTSCEEEECTTSCCCS---CC-CGGGGTTCCSEEECCSSCCCEEC----CCCCCSSCCEEECCSSCCCEECSC-----HH
T ss_pred             cCcCcEEECCCCCCCc---cC-ccccccccCCEEECCCCCCCccC----CcccCcchhhhhcccccccCCCcc-----cc
Confidence            3567899999999999   44 56788999999999999999986    478999999999999998876521     11


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs  311 (619)
                      .                                         .+.+|+.|+|++|+|..++. ..++  .+++|++|+++
T Consensus        84 ~-----------------------------------------~l~~L~~L~L~~N~i~~~~~l~~l~--~l~~L~~L~l~  120 (162)
T d1a9na_          84 Q-----------------------------------------ALPDLTELILTNNSLVELGDLDPLA--SLKSLTYLCIL  120 (162)
T ss_dssp             H-----------------------------------------HCTTCCEEECCSCCCCCGGGGGGGG--GCTTCCEEECC
T ss_pred             c-----------------------------------------cccccccceeccccccccccccccc--cccccchhhcC
Confidence            1                                         26678889999999998876 4555  89999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccc
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                      +|++.+.+.- -...+..+|+|+.|+.
T Consensus       121 ~N~i~~~~~~-r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         121 RNPVTNKKHY-RLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             SSGGGGSTTH-HHHHHHHCTTCSEETT
T ss_pred             CCccccccch-HHHHHHHCCCcCeeCC
Confidence            9999877621 1346888999999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=1.6e-12  Score=115.55  Aligned_cols=105  Identities=23%  Similarity=0.296  Sum_probs=80.7

Q ss_pred             eeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          157 KWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       157 ~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      ++|+|++|+|..   ++ . ...+++|+.|+|++|+|..+|   ..+.++++|+.|+|++|.+....  +          
T Consensus         1 R~L~Ls~n~l~~---l~-~-l~~l~~L~~L~ls~N~l~~lp---~~~~~l~~L~~L~l~~N~i~~l~--~----------   60 (124)
T d1dcea3           1 RVLHLAHKDLTV---LC-H-LEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNALENVD--G----------   60 (124)
T ss_dssp             SEEECTTSCCSS---CC-C-GGGGTTCCEEECCSSCCCCCC---GGGGGCTTCCEEECCSSCCCCCG--G----------
T ss_pred             CEEEcCCCCCCC---Cc-c-cccCCCCCEEECCCCccCcch---hhhhhhhcccccccccccccccC--c----------
Confidence            468899999887   33 2 467888999999999998886   35788899999999999876543  0          


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIRGNPL  315 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs~N~i  315 (619)
                                                          ...+.+|+.|++++|+|..++. ..+.  .+++|+.|++++|+|
T Consensus        61 ------------------------------------~~~l~~L~~L~l~~N~i~~~~~~~~l~--~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          61 ------------------------------------VANLPRLQELLLCNNRLQQSAAIQPLV--SCPRLVLLNLQGNSL  102 (124)
T ss_dssp             ------------------------------------GTTCSSCCEEECCSSCCCSSSTTGGGG--GCTTCCEEECTTSGG
T ss_pred             ------------------------------------cccccccCeEECCCCccCCCCCchhhc--CCCCCCEEECCCCcC
Confidence                                                1136678888899999998876 4454  789999999999998


Q ss_pred             Cccc
Q 007072          316 EQNS  319 (619)
Q Consensus       316 ~~i~  319 (619)
                      .+.+
T Consensus       103 ~~~~  106 (124)
T d1dcea3         103 CQEE  106 (124)
T ss_dssp             GGSS
T ss_pred             CcCc
Confidence            7654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-12  Score=127.73  Aligned_cols=155  Identities=19%  Similarity=0.122  Sum_probs=123.3

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...++.|+|++|+|..   ++.  +..+++|+.|+|++|+|...+   ..+.++++|+.|+|++|.+.....     ..
T Consensus        53 ~l~~L~~L~L~~N~l~~---l~~--~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~L~~L~l~~~~~~~~~~-----~~  119 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTK---LQV--DGTLPVLGTLDLSHNQLQSLP---LLGQTLPALTVLDVSFNRLTSLPL-----GA  119 (266)
T ss_dssp             TCTTCCEEECTTSCCCE---EEC--CSCCTTCCEEECCSSCCSSCC---CCTTTCTTCCEEECCSSCCCCCCS-----ST
T ss_pred             ccccccccccccccccc---ccc--ccccccccccccccccccccc---cccccccccccccccccccceeec-----cc
Confidence            45789999999999987   442  468999999999999998876   468899999999999999887653     34


Q ss_pred             hhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccC
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs  311 (619)
                      +..+++++.++++.....              ..|.   .....+.+|+.|++++|+|..++...|.  .+++|++|+|+
T Consensus       120 ~~~l~~l~~L~l~~n~l~--------------~l~~---~~~~~l~~l~~l~l~~N~l~~~~~~~~~--~l~~L~~L~Ls  180 (266)
T d1p9ag_         120 LRGLGELQELYLKGNELK--------------TLPP---GLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQ  180 (266)
T ss_dssp             TTTCTTCCEEECTTSCCC--------------CCCT---TTTTTCTTCCEEECTTSCCSCCCTTTTT--TCTTCCEEECC
T ss_pred             cccccccccccccccccc--------------eecc---ccccccccchhcccccccccccCccccc--cccccceeecc
Confidence            577888888877643221              1111   1123578899999999999999999887  89999999999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                      +|.|..++     .-+..+++|+.|++.+|+.
T Consensus       181 ~N~L~~lp-----~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         181 ENSLYTIP-----KGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SSCCCCCC-----TTTTTTCCCSEEECCSCCB
T ss_pred             cCCCcccC-----hhHCCCCCCCEEEecCCCC
Confidence            99999887     2344689999999998873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=8.9e-12  Score=119.66  Aligned_cols=180  Identities=14%  Similarity=0.178  Sum_probs=125.5

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|.+++|+|.+  +.+   ..++++|+.|+|++|+|..+.    .+.++++|+.|++++|++....       -+.
T Consensus        41 ~~L~~L~l~~~~i~~--l~~---l~~l~~L~~L~ls~n~i~~~~----~l~~l~~l~~l~~~~n~~~~i~-------~l~  104 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT--IEG---VQYLNNLIGLELKDNQITDLA----PLKNLTKITELELSGNPLKNVS-------AIA  104 (227)
T ss_dssp             HTCCEEECTTSCCCC--CTT---GGGCTTCCEEECCSSCCCCCG----GGTTCCSCCEEECCSCCCSCCG-------GGT
T ss_pred             CCcCEEECCCCCCCc--chh---HhcCCCCcEeecCCceeeccc----cccccccccccccccccccccc-------ccc
Confidence            578999999999998  322   468999999999999999876    3899999999999999987654       156


Q ss_pred             cCCcccccccccccccccccccccccccCCCCC-Ccc--ccCCCcCCcccccccCccccccCcccccCCCCCCCCccccc
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNP-SSL--CLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNI  310 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p-~~l--~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnL  310 (619)
                      .+++|+.++++.......-.+..+......... +.+  ........+|+.|++++|.+...++  |.  ++++|+.|+|
T Consensus       105 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--l~--~l~~L~~L~L  180 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LA--NLSKLTTLKA  180 (227)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEEC
T ss_pred             ccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh--hc--ccccceeccc
Confidence            788998887765433221111000000000000 000  0112346789999999999987654  44  7999999999


Q ss_pred             CCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCcccccc
Q 007072          311 RGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN  362 (619)
Q Consensus       311 s~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LN  362 (619)
                      ++|.+.+++      .+.++++|++|++..+. ++.  ..-+..+++|+.|+
T Consensus       181 s~n~l~~l~------~l~~l~~L~~L~Ls~N~-lt~--i~~l~~l~~L~~L~  223 (227)
T d1h6ua2         181 DDNKISDIS------PLASLPNLIEVHLKNNQ-ISD--VSPLANTSNLFIVT  223 (227)
T ss_dssp             CSSCCCCCG------GGGGCTTCCEEECTTSC-CCB--CGGGTTCTTCCEEE
T ss_pred             CCCccCCCh------hhcCCCCCCEEECcCCc-CCC--CcccccCCCCCEEE
Confidence            999998876      37899999999999885 322  22356677776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=8.3e-12  Score=118.16  Aligned_cols=139  Identities=19%  Similarity=0.271  Sum_probs=112.8

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..++++|++++|.|.+  +.+   ..++++|+.|++++|.+..++    .+.++++|+.|++++|.+....       .+
T Consensus        61 l~nL~~L~Ls~N~l~~--~~~---l~~l~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~l~~~~~~~~~-------~~  124 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD--ITP---LKNLTKLVDILMNNNQIADIT----PLANLTNLTGLTLFNNQITDID-------PL  124 (199)
T ss_dssp             CTTCCEEECCSSCCCC--CGG---GTTCTTCCEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCG-------GG
T ss_pred             CCCcCcCccccccccC--ccc---ccCCccccccccccccccccc----cccccccccccccccccccccc-------cc
Confidence            3689999999999988  333   678999999999999999886    4789999999999999987654       26


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      ..+++|+.++++..+-..                  + .....+.+|+.|++++|.+..+++  |.  ++++|++|++++
T Consensus       125 ~~l~~L~~L~l~~n~l~~------------------~-~~l~~~~~L~~L~l~~n~l~~l~~--l~--~l~~L~~L~ls~  181 (199)
T d2omxa2         125 KNLTNLNRLELSSNTISD------------------I-SALSGLTSLQQLNFSSNQVTDLKP--LA--NLTTLERLDISS  181 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC------------------C-GGGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCS
T ss_pred             chhhhhHHhhhhhhhhcc------------------c-ccccccccccccccccccccCCcc--cc--CCCCCCEEECCC
Confidence            789999999886433210                  1 112347799999999999999874  44  899999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccc
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSL  336 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL  336 (619)
                      |+|.+++      .+.++++|++|
T Consensus       182 N~i~~i~------~l~~L~~L~~L  199 (199)
T d2omxa2         182 NKVSDIS------VLAKLTNLESL  199 (199)
T ss_dssp             SCCCCCG------GGGGCTTCSEE
T ss_pred             CCCCCCc------cccCCCCCCcC
Confidence            9999877      37788888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=1.4e-11  Score=122.77  Aligned_cols=189  Identities=15%  Similarity=0.181  Sum_probs=113.1

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..++.|+|++|+|..   ++...+.++++|+.|++++|.+..++  ...++++++|+.|+|++|++......     ...
T Consensus        31 ~~l~~L~Ls~N~i~~---l~~~~f~~l~~L~~L~l~~n~~~~i~--~~~f~~l~~L~~L~l~~n~l~~l~~~-----~~~  100 (305)
T d1xkua_          31 PDTALLDLQNNKITE---IKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQLKELPEK-----MPK  100 (305)
T ss_dssp             TTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCSBCCSS-----CCT
T ss_pred             CCCCEEECcCCcCCC---cChhHhhccccccccccccccccccc--hhhhhCCCccCEecccCCccCcCccc-----hhh
Confidence            468899999999998   77777889999999999999999886  35789999999999999998765421     011


Q ss_pred             cCCccccccccccccc--------cccccccccc----------cc---------CCCCCCcccc-CCCcCCcccccccC
Q 007072          234 GCPKLEIYNSNFTINF--------GEWALGFCGE----------VY---------DKDNPSSLCL-RDRPLQSVTSLDLS  285 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~--------~~~~l~fc~~----------~~---------~~~~p~~l~~-~~~~L~~L~~LdLS  285 (619)
                      .+..|...+...+.-.        ....+.++.+          .+         .... +.+.. ....+.+|+.|+++
T Consensus       101 ~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~l~~~~~~~L~~L~l~  179 (305)
T d1xkua_         101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQGLPPSLTELHLD  179 (305)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSSCCTTCSEEECT
T ss_pred             hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc-CCccccCcccCCccCEEECC
Confidence            1121211111111000        0000000000          00         0000 00000 11234567777777


Q ss_pred             ccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccc
Q 007072          286 NRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTL  361 (619)
Q Consensus       286 ~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~L  361 (619)
                      +|.+...+...|.  ++++++.|++++|.|.++.    ...+.++++|++|+++.+..-...  .-+..+++|+.|
T Consensus       180 ~n~~~~~~~~~~~--~~~~l~~L~~s~n~l~~~~----~~~~~~l~~L~~L~L~~N~L~~lp--~~l~~l~~L~~L  247 (305)
T d1xkua_         180 GNKITKVDAASLK--GLNNLAKLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVV  247 (305)
T ss_dssp             TSCCCEECTGGGT--TCTTCCEEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSSCC--TTTTTCSSCCEE
T ss_pred             CCcCCCCChhHhh--ccccccccccccccccccc----cccccccccceeeecccccccccc--cccccccCCCEE
Confidence            7777766666665  6777888888888877776    345677788888887776432211  123455666655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=7.5e-12  Score=117.82  Aligned_cols=112  Identities=24%  Similarity=0.342  Sum_probs=97.9

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ..+++|+|++|.|..  .++...+.++++|+.|+|++|.|..++  ...+.++++|+.|+|++|++....++        
T Consensus        29 ~~l~~L~Ls~N~i~~--~~~~~~f~~l~~L~~L~L~~N~i~~~~--~~~~~~~~~L~~L~Ls~N~l~~l~~~--------   96 (192)
T d1w8aa_          29 LHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQLGENKIKEISNK--------   96 (192)
T ss_dssp             TTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSCCCCEECSS--------
T ss_pred             CCCCEEEeCCCCCcc--cccccccCCCceEeeeecccccccccc--ccccccccccceeeeccccccccCHH--------
Confidence            467899999999976  577788899999999999999999886  57899999999999999998876532        


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                                                            .+..+.+|+.|+|++|.|..+|+..|.  .+++|++|+|++|
T Consensus        97 --------------------------------------~F~~l~~L~~L~L~~N~l~~i~~~~f~--~l~~L~~l~L~~N  136 (192)
T d1w8aa_          97 --------------------------------------MFLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASN  136 (192)
T ss_dssp             --------------------------------------SSTTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTC
T ss_pred             --------------------------------------HHhCCCcccccccCCccccccCHHHhc--CCccccccccccc
Confidence                                                  122478899999999999999999998  8999999999999


Q ss_pred             CCCc
Q 007072          314 PLEQ  317 (619)
Q Consensus       314 ~i~~  317 (619)
                      ++.-
T Consensus       137 ~~~~  140 (192)
T d1w8aa_         137 PFNC  140 (192)
T ss_dssp             CBCC
T ss_pred             cccc
Confidence            9853

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=4.9e-11  Score=120.60  Aligned_cols=181  Identities=20%  Similarity=0.195  Sum_probs=125.1

Q ss_pred             CCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          152 GDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       152 g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      +...+..|.+++|.|..  +.+   ...+++|+.|++++|.+++++    .+..+++|+.|++++|.+....+       
T Consensus       195 ~l~~~~~l~l~~n~i~~--~~~---~~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-------  258 (384)
T d2omza2         195 KLTNLESLIATNNQISD--ITP---LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP-------  258 (384)
T ss_dssp             GCTTCSEEECCSSCCCC--CGG---GGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG-------
T ss_pred             cccccceeeccCCccCC--CCc---ccccCCCCEEECCCCCCCCcc----hhhcccccchhccccCccCCCCc-------
Confidence            34567788999998887  322   356789999999999999875    57889999999999999876542       


Q ss_pred             hhcCCcccccccccccccccccccccccccC----CCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcc
Q 007072          232 LQGCPKLEIYNSNFTINFGEWALGFCGEVYD----KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH  307 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~----~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~  307 (619)
                      +..+++|+.++++.....+--.+..+.....    .+.-..+ .....+.+++.|+|++|+|..+++  +.  .+++|++
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~l~~--l~--~l~~L~~  333 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDISP--VS--SLTKLQR  333 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCGG--GG--GCTTCCE
T ss_pred             ccccccCCEeeccCcccCCCCccccccccccccccccccccc-cccchhcccCeEECCCCCCCCCcc--cc--cCCCCCE
Confidence            5678899988876544322111110000000    0000111 113357789999999999998864  43  7999999


Q ss_pred             cccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCcccccc
Q 007072          308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLN  362 (619)
Q Consensus       308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LN  362 (619)
                      |+|++|.|.+++      .+.++++|+.|++..|..-+..   -+..+++|+.|+
T Consensus       334 L~L~~n~l~~l~------~l~~l~~L~~L~l~~N~l~~l~---~l~~l~~L~~L~  379 (384)
T d2omza2         334 LFFANNKVSDVS------SLANLTNINWLSAGHNQISDLT---PLANLTRITQLG  379 (384)
T ss_dssp             EECCSSCCCCCG------GGGGCTTCCEEECCSSCCCBCG---GGTTCTTCSEEE
T ss_pred             EECCCCCCCCCh------hHcCCCCCCEEECCCCcCCCCh---hhccCCCCCEee
Confidence            999999998876      4788999999999988642222   256667776653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.1e-11  Score=118.57  Aligned_cols=156  Identities=20%  Similarity=0.177  Sum_probs=111.9

Q ss_pred             Cceeeeec-ccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          154 GTVKWLEL-EDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       154 ~~l~~L~L-s~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ..+..+.+ ..+.+..   ++...+.++++|+.|+|++|.+..++  ...+..+++|+.+++++|.+....+     ..+
T Consensus        80 ~~~~~l~~~~~~~~~~---l~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i~~-----~~f  149 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRS---VDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD-----DTF  149 (284)
T ss_dssp             TTCCEEECCSCTTCCC---CCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT-----TTT
T ss_pred             cccccccccccccccc---ccchhhcccccCCEEecCCccccccc--ccccchhcccchhhhccccccccCh-----hHh
Confidence            44444443 3455666   56666778888888888888777665  3466677888888888888776542     346


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRG  312 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~  312 (619)
                      +.+++|+.|+++..+-.+              .|.   .....+.+|+.|++++|.+..+++..|.  .+++|+.|++++
T Consensus       150 ~~~~~L~~L~l~~N~l~~--------------l~~---~~f~~l~~L~~l~l~~N~l~~i~~~~f~--~l~~L~~L~l~~  210 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISS--------------VPE---RAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFA  210 (284)
T ss_dssp             TTCTTCCEEECCSSCCCE--------------ECT---TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCS
T ss_pred             ccccchhhcccccCcccc--------------cch---hhhccccccchhhhhhccccccChhHhh--hhhhcccccccc
Confidence            677777777765332110              000   1123477899999999999999888887  899999999999


Q ss_pred             CCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          313 NPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       313 N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |.|..+.    ...+.++++|+.|+++.|.
T Consensus       211 N~i~~~~----~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         211 NNLSALP----TEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SCCSCCC----HHHHTTCTTCCEEECCSSC
T ss_pred             ccccccc----ccccccccccCEEEecCCC
Confidence            9999888    6778899999999998876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.14  E-value=7.1e-11  Score=113.21  Aligned_cols=160  Identities=20%  Similarity=0.262  Sum_probs=114.0

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|++++|.|.+  +.+   ..++++|+.|++++|.+++++    .+.++++|+.|.+++|.+....+       +
T Consensus        62 l~~L~~L~ls~n~i~~--~~~---l~~l~~l~~l~~~~n~~~~i~----~l~~l~~L~~l~l~~~~~~~~~~-------~  125 (227)
T d1h6ua2          62 LNNLIGLELKDNQITD--LAP---LKNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQITDVTP-------L  125 (227)
T ss_dssp             CTTCCEEECCSSCCCC--CGG---GTTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSCCCCCGG-------G
T ss_pred             CCCCcEeecCCceeec--ccc---ccccccccccccccccccccc----cccccccccccccccccccccch-------h
Confidence            5789999999999988  333   689999999999999999886    57899999999999998776541       3


Q ss_pred             hcCCcccccccccccccccccccccccccCC----CCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCccc
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDK----DNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHL  308 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~----~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~L  308 (619)
                      ...+.+..+.+..........+..+......    ...... .....+.+|+.|||++|++..++.  |+  ++++|++|
T Consensus       126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n~l~~l~~--l~--~l~~L~~L  200 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP--LA--SLPNLIEV  200 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCCEE
T ss_pred             ccccchhhhhchhhhhchhhhhccccccccccccccccccc-hhhcccccceecccCCCccCCChh--hc--CCCCCCEE
Confidence            4455555554433222211111111110000    000011 123468899999999999999875  44  89999999


Q ss_pred             ccCCCCCCccchHHHHHHHhCCCCCcccccc
Q 007072          309 NIRGNPLEQNSVRELLEVLKGFPCLQSLGVD  339 (619)
Q Consensus       309 nLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld  339 (619)
                      +|++|+|.+++      -+.++++|+.|++.
T Consensus       201 ~Ls~N~lt~i~------~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         201 HLKNNQISDVS------PLANTSNLFIVTLT  225 (227)
T ss_dssp             ECTTSCCCBCG------GGTTCTTCCEEEEE
T ss_pred             ECcCCcCCCCc------ccccCCCCCEEEee
Confidence            99999999887      37899999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=5.4e-13  Score=127.59  Aligned_cols=132  Identities=23%  Similarity=0.301  Sum_probs=87.3

Q ss_pred             CCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccccc
Q 007072          178 SKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFC  257 (619)
Q Consensus       178 ~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc  257 (619)
                      ..+++|+.|+|++|+|++++    .+.+|++|+.|+|++|.+....+      +...                       
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~----~l~~l~~L~~L~Ls~N~i~~i~~------~~~~-----------------------   91 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIKKIEN------LDAV-----------------------   91 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC----CHHHHTTCCEEECCEEEECSCSS------HHHH-----------------------
T ss_pred             hcccccceeECcccCCCCcc----cccCCccccChhhcccccccccc------cccc-----------------------
Confidence            46788888899988888875    37788889999998888765431      1111                       


Q ss_pred             ccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCcccc
Q 007072          258 GEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLG  337 (619)
Q Consensus       258 ~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~  337 (619)
                                        +.+|+.|++++|.|..++.  +.  .+++|+.|+|++|.|.+++.   ...+.++++|+.|+
T Consensus        92 ------------------~~~L~~L~l~~N~i~~l~~--~~--~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~  146 (198)
T d1m9la_          92 ------------------ADTLEELWISYNQIASLSG--IE--KLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLL  146 (198)
T ss_dssp             ------------------HHHCCEEECSEEECCCHHH--HH--HHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEE
T ss_pred             ------------------ccccccccccccccccccc--cc--ccccccccccccchhccccc---cccccCCCccceee
Confidence                              2345666666666666542  22  56666666666666665541   23456666666666


Q ss_pred             ccCCCCC---------CchhHHHhhhcCccccccCccch
Q 007072          338 VDIPGPL---------GESAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       338 ld~p~~l---------~~~~~~il~~lp~L~~LNg~~~s  367 (619)
                      +..|+..         ..+...++..+|+|+.|||..++
T Consensus       147 L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~  185 (198)
T d1m9la_         147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             ECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGT
T ss_pred             cCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCC
Confidence            6655320         11225678999999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=1.3e-10  Score=117.37  Aligned_cols=164  Identities=16%  Similarity=0.192  Sum_probs=114.4

Q ss_pred             cCCCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhH
Q 007072          151 KGDGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA  230 (619)
Q Consensus       151 ~g~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~  230 (619)
                      .+...++.|.+++|.|.+   ++  ....+++|+.|++++|.++.++    .+.++++|+.|++++|.+....+      
T Consensus       216 ~~~~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~~~l~~~~~------  280 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD---IG--TLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISP------  280 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC---CG--GGGGCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCGG------
T ss_pred             cccCCCCEEECCCCCCCC---cc--hhhcccccchhccccCccCCCC----cccccccCCEeeccCcccCCCCc------
Confidence            345788999999999888   22  3567899999999999999876    37889999999999999876541      


Q ss_pred             HhhcCCcccccccccccccccccccccccccC----CCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCc
Q 007072          231 ILQGCPKLEIYNSNFTINFGEWALGFCGEVYD----KDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLS  306 (619)
Q Consensus       231 il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~----~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~  306 (619)
                       +..++.++.+........+--.+..|.....    .+.-..+. ....+.+|+.|+|++|.|+.++.  |+  ++++|+
T Consensus       281 -~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~~--l~--~l~~L~  354 (384)
T d2omza2         281 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS--LA--NLTNIN  354 (384)
T ss_dssp             -GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCC
T ss_pred             -cccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCChh--Hc--CCCCCC
Confidence             3445555554443322211000111111000    00011111 13458899999999999999873  54  899999


Q ss_pred             ccccCCCCCCccchHHHHHHHhCCCCCccccccCC
Q 007072          307 HLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIP  341 (619)
Q Consensus       307 ~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p  341 (619)
                      +|+|++|+|.++.      .+.++++|++|+++.|
T Consensus       355 ~L~l~~N~l~~l~------~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         355 WLSAGHNQISDLT------PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCCBCG------GGTTCTTCSEEECCCE
T ss_pred             EEECCCCcCCCCh------hhccCCCCCEeeCCCC
Confidence            9999999999876      3889999999998875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.5e-11  Score=120.20  Aligned_cols=91  Identities=26%  Similarity=0.352  Sum_probs=69.6

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|++++|.|..+.+  ..++..|++|+.|+|++|.+.+.  ....+.++++|+.|+|+++.-...   .....+.
T Consensus        45 ~~~L~~LdLs~~~i~~~~l--~~l~~~c~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~Ls~c~~itd---~~l~~l~  117 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTL--HGILSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSE---FALQTLL  117 (284)
T ss_dssp             CBCCCEEECTTCEECHHHH--HHHHTTBCCCSEEECTTCBCCHH--HHHHHTTCTTCSEEECTTCBSCCH---HHHHHHH
T ss_pred             CCCCCEEECCCCccCHHHH--HHHHHhCCCcccccccccCCCcH--HHHHHhcCCCCcCccccccccccc---cccchhh
Confidence            4678899999999877322  34578999999999999988754  366788999999999999753221   1245667


Q ss_pred             hcCCcccccccccccccc
Q 007072          233 QGCPKLEIYNSNFTINFG  250 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~  250 (619)
                      +.+|+|+.|+++.+.+.+
T Consensus       118 ~~~~~L~~L~ls~c~~~~  135 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFT  135 (284)
T ss_dssp             HHCTTCCEEECCCCTTCC
T ss_pred             HHHHhccccccccccccc
Confidence            889999999998766554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=9.2e-11  Score=103.85  Aligned_cols=120  Identities=20%  Similarity=0.255  Sum_probs=95.2

Q ss_pred             cEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccccCC
Q 007072          184 QALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDK  263 (619)
Q Consensus       184 ~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~  263 (619)
                      +.|+|++|+|+.++    .+.++++|+.|+|++|.+....+.                                      
T Consensus         1 R~L~Ls~n~l~~l~----~l~~l~~L~~L~ls~N~l~~lp~~--------------------------------------   38 (124)
T d1dcea3           1 RVLHLAHKDLTVLC----HLEQLLLVTHLDLSHNRLRALPPA--------------------------------------   38 (124)
T ss_dssp             SEEECTTSCCSSCC----CGGGGTTCCEEECCSSCCCCCCGG--------------------------------------
T ss_pred             CEEEcCCCCCCCCc----ccccCCCCCEEECCCCccCcchhh--------------------------------------
Confidence            46899999999886    478999999999999998765311                                      


Q ss_pred             CCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCC
Q 007072          264 DNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGP  343 (619)
Q Consensus       264 ~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~  343 (619)
                               ...+.+|+.|++++|.|..+|+  |.  ++++|+.|++++|.|.+++.   ...+.++++|+.|++..|..
T Consensus        39 ---------~~~l~~L~~L~l~~N~i~~l~~--~~--~l~~L~~L~l~~N~i~~~~~---~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          39 ---------LAALRCLEVLQASDNALENVDG--VA--NLPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             ---------GGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGG
T ss_pred             ---------hhhhhcccccccccccccccCc--cc--cccccCeEECCCCccCCCCC---chhhcCCCCCCEEECCCCcC
Confidence                     1136789999999999999974  44  89999999999999998872   24578999999999998864


Q ss_pred             CC--chhHHHhhhcCccccc
Q 007072          344 LG--ESAIEILESLPTLCTL  361 (619)
Q Consensus       344 l~--~~~~~il~~lp~L~~L  361 (619)
                      ..  .+...+...+|+|..|
T Consensus       103 ~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3         103 CQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGSSSCTTHHHHHCTTCSEE
T ss_pred             CcCccHHHHHHHHCcCcceE
Confidence            22  2336677778887654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.6e-10  Score=111.95  Aligned_cols=185  Identities=21%  Similarity=0.196  Sum_probs=125.6

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHH
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAI  231 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~i  231 (619)
                      -..+++|.+++|.+.+   ..+....++|+|+.|+|++| .+++.. ......++++|+.|+|+++.....  .++...+
T Consensus        70 c~~L~~L~L~~~~l~~---~~~~~l~~~~~L~~L~Ls~c~~itd~~-l~~l~~~~~~L~~L~ls~c~~~~~--~~~~~~~  143 (284)
T d2astb2          70 CSKLQNLSLEGLRLSD---PIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTE--KHVQVAV  143 (284)
T ss_dssp             BCCCSEEECTTCBCCH---HHHHHHTTCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCH--HHHHHHH
T ss_pred             CCCcccccccccCCCc---HHHHHHhcCCCCcCccccccccccccc-cchhhHHHHhcccccccccccccc--ccchhhh
Confidence            3579999999999887   33333457899999999996 776543 345678899999999999753322  2344445


Q ss_pred             hhcCCccccccccccc-ccccccccccccccCCCCCCccccCCCcCCcccccccCccc-cccCcccccCCCCCCCCcccc
Q 007072          232 LQGCPKLEIYNSNFTI-NFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRC-IHNLVNKAFSPAEMPSLSHLN  309 (619)
Q Consensus       232 l~~lP~LeiLn~~~T~-n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~-I~~Lp~~~f~~~~L~~L~~Ln  309 (619)
                      ...+++|+.|+++... +.+.-++.               .....+++|+.|+|++|. ++.-....+.  .+++|++|+
T Consensus       144 ~~~~~~L~~L~l~~~~~~i~~~~l~---------------~l~~~~~~L~~L~L~~~~~itd~~~~~l~--~~~~L~~L~  206 (284)
T d2astb2         144 AHVSETITQLNLSGYRKNLQKSDLS---------------TLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQHLS  206 (284)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHH---------------HHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCCEEE
T ss_pred             cccccccchhhhccccccccccccc---------------ccccccccccccccccccCCCchhhhhhc--ccCcCCEEE
Confidence            5667899999886422 11111111               011136789999999875 5533333333  789999999


Q ss_pred             cCCC-CCCccchHHHHHHHhCCCCCccccccCCCCCCchh-HHHhhhcCccccccCccch
Q 007072          310 IRGN-PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESA-IEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       310 Ls~N-~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~-~~il~~lp~L~~LNg~~~s  367 (619)
                      |+++ .|.+..    ...+.++|+|++|++...  +.... ..+.+.+|+|+ +|+..++
T Consensus       207 L~~C~~i~~~~----l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~-i~~~~ls  259 (284)
T d2astb2         207 LSRCYDIIPET----LLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ-INCSHFT  259 (284)
T ss_dssp             CTTCTTCCGGG----GGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE-ESCCCSC
T ss_pred             CCCCCCCChHH----HHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCcccc-ccCccCC
Confidence            9995 676655    344788999999998764  23333 55667899997 4666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.93  E-value=1.2e-11  Score=117.97  Aligned_cols=127  Identities=28%  Similarity=0.376  Sum_probs=98.8

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...+++|+|++|+|.+   ++  -...+++|+.|+|++|.|.+++.   ....+++|+.|+|++|.+....+  +     
T Consensus        47 L~~L~~L~Ls~n~I~~---i~--~l~~l~~L~~L~Ls~N~i~~i~~---~~~~~~~L~~L~l~~N~i~~l~~--~-----  111 (198)
T d1m9la_          47 LKACKHLALSTNNIEK---IS--SLSGMENLRILSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLSG--I-----  111 (198)
T ss_dssp             TTTCCEEECSEEEESC---CC--CHHHHTTCCEEECCEEEECSCSS---HHHHHHHCCEEECSEEECCCHHH--H-----
T ss_pred             ccccceeECcccCCCC---cc--cccCCccccChhhcccccccccc---ccccccccccccccccccccccc--c-----
Confidence            4689999999999998   33  24689999999999999999863   44557789999999999876531  1     


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc-cccCCCCCCCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN-KAFSPAEMPSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~-~~f~~~~L~~L~~LnLs  311 (619)
                                                               ..+.+|+.|+|++|+|..++. ..++  .+++|+.|+|+
T Consensus       112 -----------------------------------------~~l~~L~~L~L~~N~i~~~~~~~~l~--~l~~L~~L~L~  148 (198)
T d1m9la_         112 -----------------------------------------EKLVNLRVLYMSNNKITNWGEIDKLA--ALDKLEDLLLA  148 (198)
T ss_dssp             -----------------------------------------HHHHHSSEEEESEEECCCHHHHHHHT--TTTTCSEEEEC
T ss_pred             -----------------------------------------cccccccccccccchhcccccccccc--CCCccceeecC
Confidence                                                     025678899999999998876 4565  89999999999


Q ss_pred             CCCCCccch-----HH-HHHHHhCCCCCcccc
Q 007072          312 GNPLEQNSV-----RE-LLEVLKGFPCLQSLG  337 (619)
Q Consensus       312 ~N~i~~i~~-----~~-l~~~l~~~~~L~sL~  337 (619)
                      +|++.....     .. -..++..+|+|+.|+
T Consensus       149 ~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            999854431     11 123478899999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=2.2e-09  Score=102.08  Aligned_cols=141  Identities=19%  Similarity=0.240  Sum_probs=110.1

Q ss_pred             CCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG  258 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~  258 (619)
                      .+.+|+.|++++|.|.+++    .+..+++|+.|+|++|.+....+       ...+++|+.|+++..+-..        
T Consensus        44 ~L~~L~~L~l~~~~i~~l~----~l~~l~~L~~L~L~~n~i~~l~~-------~~~l~~L~~L~l~~n~i~~--------  104 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKD--------  104 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC--------
T ss_pred             HhcCccEEECcCCCCCCch----hHhhCCCCCEEeCCCccccCccc-------cccCccccccccccccccc--------
Confidence            4678999999999999986    37899999999999999887652       4679999999987543210        


Q ss_pred             cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072          259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                                +. ....+.+|+.|++++|.+..++.  +.  .+++|+.+++++|.+.+..      .+.++++|+.|.+
T Consensus       105 ----------l~-~l~~l~~L~~L~l~~~~~~~~~~--l~--~l~~l~~l~~~~n~l~~~~------~~~~l~~L~~l~l  163 (210)
T d1h6ta2         105 ----------LS-SLKDLKKLKSLSLEHNGISDING--LV--HLPQLESLYLGNNKITDIT------VLSRLTKLDTLSL  163 (210)
T ss_dssp             ----------GG-GGTTCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCG------GGGGCTTCSEEEC
T ss_pred             ----------cc-ccccccccccccccccccccccc--cc--ccccccccccccccccccc------ccccccccccccc
Confidence                      11 12247899999999999998764  33  7899999999999998766      4678999999999


Q ss_pred             cCCCCCCchhHHHhhhcCcccccc
Q 007072          339 DIPGPLGESAIEILESLPTLCTLN  362 (619)
Q Consensus       339 d~p~~l~~~~~~il~~lp~L~~LN  362 (619)
                      ..+..-+..   -+..+++|+.|+
T Consensus       164 ~~n~l~~i~---~l~~l~~L~~L~  184 (210)
T d1h6ta2         164 EDNQISDIV---PLAGLTKLQNLY  184 (210)
T ss_dssp             CSSCCCCCG---GGTTCTTCCEEE
T ss_pred             ccccccccc---cccCCCCCCEEE
Confidence            988643322   256788888774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=1.2e-09  Score=108.32  Aligned_cols=171  Identities=19%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|++++|+|..   +|.   ..++.+..|.+++|.+..++  ...+.....+..++...|+.....   .....+
T Consensus        78 l~~L~~L~l~~n~l~~---l~~---~~~~~l~~L~~~~n~l~~l~--~~~~~~~~~~~~l~~~~n~~~~~~---~~~~~~  146 (305)
T d1xkua_          78 LVKLERLYLSKNQLKE---LPE---KMPKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSG---IENGAF  146 (305)
T ss_dssp             CTTCCEEECCSSCCSB---CCS---SCCTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGG---BCTTGG
T ss_pred             CCccCEecccCCccCc---Ccc---chhhhhhhhhccccchhhhh--hhhhhccccccccccccccccccC---CCcccc
Confidence            4677888888888877   443   23456677777777777665  344556666666666666544332   112234


Q ss_pred             hcCCcccccccccccccccccccccccccC----C-CCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcc
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYD----K-DNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSH  307 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~----~-~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~  307 (619)
                      ..+++|+.++++...-. .+...++.....    . ............+..++.|++++|.|..+++..|.  ++++|+.
T Consensus       147 ~~l~~L~~l~l~~n~l~-~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~--~l~~L~~  223 (305)
T d1xkua_         147 QGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRE  223 (305)
T ss_dssp             GGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCE
T ss_pred             ccccccCccccccCCcc-ccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc--cccccee
Confidence            55555555554432111 010000000000    0 00000011223456777888888888888777776  7788888


Q ss_pred             cccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          308 LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       308 LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      |+|++|.|..++     ..+.++++|+.|++..|.
T Consensus       224 L~L~~N~L~~lp-----~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         224 LHLNNNKLVKVP-----GGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             EECCSSCCSSCC-----TTTTTCSSCCEEECCSSC
T ss_pred             eecccccccccc-----cccccccCCCEEECCCCc
Confidence            888888887765     246777888888877664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-09  Score=104.77  Aligned_cols=58  Identities=22%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             cccccccCccccccCcccccCCCCCCCCcc-cccCCCCCCccchHHHHHHHhCCCCCccccccCCC
Q 007072          278 SVTSLDLSNRCIHNLVNKAFSPAEMPSLSH-LNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       278 ~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~-LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      .+..|++++|.|..++...|.   .+++.. +.+++|.|.+++    ...|.++++|+.|++..+.
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~---~~~l~~~~~l~~n~l~~l~----~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFN---GTQLDELNLSDNNNLEELP----NDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTT---TCCEEEEECTTCTTCCCCC----TTTTTTSCCCSEEECTTSC
T ss_pred             cceeeeccccccccccccccc---chhhhcccccccccccccc----HHHhcCCCCCCEEECCCCc
Confidence            455566666666666665553   333333 344555666555    2345566666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.3e-09  Score=95.74  Aligned_cols=114  Identities=21%  Similarity=0.190  Sum_probs=83.3

Q ss_pred             eeecccCCCCccccccccccCCCCCccEeecCCC-cccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCC
Q 007072          158 WLELEDADIGDDMLLSLNLSSKFPDLQALSLCGN-KLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCP  236 (619)
Q Consensus       158 ~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~N-kL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP  236 (619)
                      .+..+++++.+   .|-. ...+++|+.|+|.+| .|+.++  ...+.++++|+.|+|++|.+....++.          
T Consensus        12 ~l~c~~~~~~~---~p~~-l~~l~~l~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~----------   75 (156)
T d2ifga3          12 GLRCTRDGALD---SLHH-LPGAENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPDA----------   75 (156)
T ss_dssp             CEECCSSCCCT---TTTT-SCSCSCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCEECTTG----------
T ss_pred             eEEecCCCCcc---Cccc-ccCccccCeeecCCCccccccC--chhhccccccCcceeeccccCCccccc----------
Confidence            45667777655   3322 346788999999766 588887  457888999999999999888775321          


Q ss_pred             cccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCC
Q 007072          237 KLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLE  316 (619)
Q Consensus       237 ~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~  316 (619)
                                                          +..+.+|+.|+|++|+|..+|.+.|.   ..+|++|+|++|++.
T Consensus        76 ------------------------------------f~~l~~L~~L~Ls~N~l~~l~~~~~~---~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          76 ------------------------------------FHFTPRLSRLNLSFNALESLSWKTVQ---GLSLQELVLSGNPLH  116 (156)
T ss_dssp             ------------------------------------GGSCSCCCEEECCSSCCSCCCSTTTC---SCCCCEEECCSSCCC
T ss_pred             ------------------------------------ccccccccceeccCCCCcccChhhhc---cccccccccCCCccc
Confidence                                                12477899999999999999999995   446999999999983


Q ss_pred             -ccchHHHHHH
Q 007072          317 -QNSVRELLEV  326 (619)
Q Consensus       317 -~i~~~~l~~~  326 (619)
                       +-....+..+
T Consensus       117 C~C~~~~l~~~  127 (156)
T d2ifga3         117 CSCALRWLQRW  127 (156)
T ss_dssp             CCGGGHHHHHH
T ss_pred             CCchHHHHHHH
Confidence             3333334443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.67  E-value=9.3e-09  Score=102.37  Aligned_cols=168  Identities=15%  Similarity=0.175  Sum_probs=109.4

Q ss_pred             CCceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHh
Q 007072          153 DGTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAIL  232 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il  232 (619)
                      ...++.|+|++|+|..   ++...+..++.|+.|++++|.+...-  ...+.++++|+.++|++|.+....+.     .+
T Consensus       100 L~~L~~L~Ls~N~l~~---~~~~~~~~~~~L~~l~l~~N~~~~~~--p~~l~~l~~L~~l~l~~n~l~~~ip~-----~~  169 (313)
T d1ogqa_         100 LTQLHYLYITHTNVSG---AIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPD-----SY  169 (313)
T ss_dssp             CTTCSEEEEEEECCEE---ECCGGGGGCTTCCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCG-----GG
T ss_pred             ccccchhhhccccccc---cccccccchhhhcccccccccccccC--chhhccCcccceeecccccccccccc-----cc
Confidence            3678889999998888   66666778888999999988665432  35678889999999999987754422     23


Q ss_pred             hcCCcc-ccccccccccccc----cc------ccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCC
Q 007072          233 QGCPKL-EIYNSNFTINFGE----WA------LGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAE  301 (619)
Q Consensus       233 ~~lP~L-eiLn~~~T~n~~~----~~------l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~  301 (619)
                      ..++++ +.+..+..+-.+.    +.      +..+........    ......+.+|+.|++++|.+...++.+.   .
T Consensus       170 ~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~----~~~~~~~~~l~~l~~~~~~l~~~~~~~~---~  242 (313)
T d1ogqa_         170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLAFDLGKVG---L  242 (313)
T ss_dssp             GCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC----GGGCCTTSCCSEEECCSSEECCBGGGCC---C
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccc---c
Confidence            445554 4444332111110    00      001111110111    1122356788899999999887666543   6


Q ss_pred             CCCCcccccCCCCCC-ccchHHHHHHHhCCCCCccccccCCC
Q 007072          302 MPSLSHLNIRGNPLE-QNSVRELLEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       302 L~~L~~LnLs~N~i~-~i~~~~l~~~l~~~~~L~sL~ld~p~  342 (619)
                      +++|+.|+|++|+|. .++     ..+.++++|+.|++..|.
T Consensus       243 ~~~L~~L~Ls~N~l~g~iP-----~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         243 SKNLNGLDLRNNRIYGTLP-----QGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CTTCCEEECCSSCCEECCC-----GGGGGCTTCCEEECCSSE
T ss_pred             ccccccccCccCeecccCC-----hHHhCCCCCCEEECcCCc
Confidence            889999999999987 444     467888999999988774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.5e-08  Score=92.63  Aligned_cols=108  Identities=21%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             CCCccEeecCCCcccchhhHHHHHhcccccceeecCCCc-ccccccchhhhHHhhcCCcccccccccccccccccccccc
Q 007072          180 FPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNP-VLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCG  258 (619)
Q Consensus       180 ~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Np-i~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~  258 (619)
                      +.....++.+++.+.+.+   ..+.++++|+.|+|++|+ +....++                                 
T Consensus         7 c~~~~~l~c~~~~~~~~p---~~l~~l~~l~~L~l~~n~~l~~i~~~---------------------------------   50 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSL---HHLPGAENLTELYIENQQHLQHLELR---------------------------------   50 (156)
T ss_dssp             CSSSSCEECCSSCCCTTT---TTSCSCSCCSEEECCSCSSCCEECGG---------------------------------
T ss_pred             cCCCCeEEecCCCCccCc---ccccCccccCeeecCCCccccccCch---------------------------------
Confidence            345667899999888775   457889999999998775 6655422                                 


Q ss_pred             cccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccc
Q 007072          259 EVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGV  338 (619)
Q Consensus       259 ~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~l  338 (619)
                                   .+..+.+|+.|+|++|+|..+++..|.  .+++|+.|+|++|.|..++    ...+... +|+.|++
T Consensus        51 -------------~f~~l~~L~~L~Ls~N~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~l~----~~~~~~~-~l~~L~L  110 (156)
T d2ifga3          51 -------------DLRGLGELRNLTIVKSGLRFVAPDAFH--FTPRLSRLNLSFNALESLS----WKTVQGL-SLQELVL  110 (156)
T ss_dssp             -------------GSCSCCCCSEEECCSSCCCEECTTGGG--SCSCCCEEECCSSCCSCCC----STTTCSC-CCCEEEC
T ss_pred             -------------hhccccccCcceeeccccCCccccccc--ccccccceeccCCCCcccC----hhhhccc-ccccccc
Confidence                         122477899999999999999999998  8999999999999999988    3445444 6999999


Q ss_pred             cCCCC
Q 007072          339 DIPGP  343 (619)
Q Consensus       339 d~p~~  343 (619)
                      +.|+.
T Consensus       111 ~~Np~  115 (156)
T d2ifga3         111 SGNPL  115 (156)
T ss_dssp             CSSCC
T ss_pred             CCCcc
Confidence            98864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=9.5e-09  Score=98.18  Aligned_cols=174  Identities=18%  Similarity=0.144  Sum_probs=105.7

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccc-hhhHHHHHhcccccceeecCC-CcccccccchhhhHHh
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLET-VEIIVQEVTKLKNLRALWLNN-NPVLKKCDHCMEDAIL  232 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~-~~~v~~~l~~L~~Lk~L~Ls~-Npi~~~~~~~~~~~il  232 (619)
                      .++.|++++|.|..   ++...+.++++|+.|+|++|.+.. ++  ...+.++++++.|.++. |.+....+     ..+
T Consensus        30 ~l~~L~Ls~n~i~~---l~~~~f~~l~~L~~L~ls~n~~~~~i~--~~~f~~l~~l~~l~~~~~n~l~~~~~-----~~~   99 (242)
T d1xwdc1          30 NAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRIEKANNLLYINP-----EAF   99 (242)
T ss_dssp             CCSEEEEESCCCCE---ECTTTTTTCTTCCEEEEESCTTCCEEC--SSSEESCTTCCEEEEECCTTCCEECT-----TSE
T ss_pred             CCCEEECcCCcCCc---cChhHhhccchhhhhhhccccccceee--cccccccccccccccccccccccccc-----ccc
Confidence            46677788877776   666667777888888888876654 22  33566777777777653 55554442     235


Q ss_pred             hcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCC-CCCcccccC
Q 007072          233 QGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEM-PSLSHLNIR  311 (619)
Q Consensus       233 ~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L-~~L~~LnLs  311 (619)
                      ..+++|+.++++.++-..              .+ . ......+..+..+..+++.+..++...|.  .+ ..+..|+++
T Consensus       100 ~~l~~L~~l~l~~~~l~~--------------~~-~-~~~~~~l~~l~~~~~~n~~l~~i~~~~~~--~~~~~l~~L~l~  161 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKH--------------LP-D-VHKIHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLN  161 (242)
T ss_dssp             ECCTTCCEEEEESCCCCS--------------CC-C-CTTTCBSSCEEEEEESCTTCCEECTTSST--TSBSSCEEEECC
T ss_pred             cccccccccccchhhhcc--------------cc-c-ccccccccccccccccccccccccccccc--cccccceeeecc
Confidence            677778777765432110              00 0 00122356667777888888888887775  44 478889999


Q ss_pred             CCCCCccchHHHHHHHhCCCCCcccc-ccCCCCCCchhHHHhhhcCcccccc
Q 007072          312 GNPLEQNSVRELLEVLKGFPCLQSLG-VDIPGPLGESAIEILESLPTLCTLN  362 (619)
Q Consensus       312 ~N~i~~i~~~~l~~~l~~~~~L~sL~-ld~p~~l~~~~~~il~~lp~L~~LN  362 (619)
                      +|.|..+..    ..+ ..++++++. ++.+. ++.-....+..+++|+.|+
T Consensus       162 ~n~l~~i~~----~~~-~~~~l~~~~~l~~n~-l~~l~~~~f~~l~~L~~L~  207 (242)
T d1xwdc1         162 KNGIQEIHN----CAF-NGTQLDELNLSDNNN-LEELPNDVFHGASGPVILD  207 (242)
T ss_dssp             SSCCCEECT----TTT-TTCCEEEEECTTCTT-CCCCCTTTTTTSCCCSEEE
T ss_pred             ccccccccc----ccc-cchhhhccccccccc-cccccHHHhcCCCCCCEEE
Confidence            999988772    222 334555553 34332 2221123456677777763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.3e-08  Score=93.36  Aligned_cols=136  Identities=21%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             CceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhh
Q 007072          154 GTVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQ  233 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~  233 (619)
                      ...+.|+++++....+ +      ..+..+..|++..|.+..++   .+..++++|+.|+||+|.+....+  + ...+ 
T Consensus        22 ~~~~~Ldls~l~~~~~-l------~~~~~~~~l~~~~~~~~~l~---~~~~~~~~L~~L~Ls~N~i~~l~~--~-~~~~-   87 (162)
T d1koha1          22 GSQQALDLKGLRSDPD-L------VAQNIDVVLNRRSSMAATLR---IIEENIPELLSLNLSNNRLYRLDD--M-SSIV-   87 (162)
T ss_dssp             SSSCCBCCCCCSSCTT-T------TTTTCCCCTTSHHHHHHHHH---HHHHHCTTCCCCCCCSSCCCCCSG--G-GTHH-
T ss_pred             hhhCeeecccCCCCch-h------hhccchhhcchhhhHhhhhH---HHHHhCCCCCEeeCCCccccCCch--h-HHHH-
Confidence            3456677776653221 1      12223333444444443332   345678889999999998776541  0 0000 


Q ss_pred             cCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCC
Q 007072          234 GCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGN  313 (619)
Q Consensus       234 ~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N  313 (619)
                                                              ..+.+|+.||||+|.|..++.-.+.  ...+|+.|+++||
T Consensus        88 ----------------------------------------~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~N  125 (162)
T d1koha1          88 ----------------------------------------QKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGN  125 (162)
T ss_dssp             ----------------------------------------HHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTS
T ss_pred             ----------------------------------------hhCCcccccccccCccccchhhhhh--hccccceeecCCC
Confidence                                                    1256677778888888887764332  4556888888888


Q ss_pred             CCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccccccCccch
Q 007072          314 PLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLCTLNGVTAS  367 (619)
Q Consensus       314 ~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~~LNg~~~s  367 (619)
                      +|.......                      ..|...+++.+|+|+.|||..+.
T Consensus       126 pl~~~~~~~----------------------~~y~~~i~~~~P~L~~LDg~~v~  157 (162)
T d1koha1         126 SLSDTFRDQ----------------------STYISAIRERFPKLLRLDGHELP  157 (162)
T ss_dssp             TTSSSSSSH----------------------HHHHHHHHTTSTTCCEETTEECC
T ss_pred             CcCcCcccc----------------------hhHHHHHHHHCCCCCEECcCCCc
Confidence            876543100                      01235667777777777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=3.8e-08  Score=99.32  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=72.5

Q ss_pred             CCCCccEeecCCCcccc--hhhHHHHHhcccccceeecCCCcccccccchhhhH--------HhhcCCcccccccccccc
Q 007072          179 KFPDLQALSLCGNKLET--VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDA--------ILQGCPKLEIYNSNFTIN  248 (619)
Q Consensus       179 ~~p~L~~L~Ls~NkL~~--~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~--------il~~lP~LeiLn~~~T~n  248 (619)
                      .+++|+.|+|++|.+..  +..+...+..+++|+.|+|++|.+.......+.+.        .....+.|+.++++.+.-
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            56777777777776655  33445566667777777777776543221111111        123456666655543221


Q ss_pred             cccccccccccccCCCCCCccccCCCcCCcccccccCccccccCc-----ccccCCCCCCCCcccccCCCCCCccchHHH
Q 007072          249 FGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLV-----NKAFSPAEMPSLSHLNIRGNPLEQNSVREL  323 (619)
Q Consensus       249 ~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp-----~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l  323 (619)
                      .......++.             ......+|+.|+|++|.|..-.     ...+.  .+++|+.|+|++|.|.+.....+
T Consensus       171 ~~~~~~~l~~-------------~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~--~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         171 ENGSMKEWAK-------------TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TGGGHHHHHH-------------HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cccccccccc-------------hhhhhhhhcccccccccccccccccchhhhhc--chhhhcccccccccccccccccc
Confidence            1000000000             0012335556666666554210     11122  45556666666665544444445


Q ss_pred             HHHHhCCCCCccccccCCC
Q 007072          324 LEVLKGFPCLQSLGVDIPG  342 (619)
Q Consensus       324 ~~~l~~~~~L~sL~ld~p~  342 (619)
                      ...+..+++|++|++..+.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCC
T ss_pred             cccccccccchhhhhhcCc
Confidence            5555566666666655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.51  E-value=2.9e-08  Score=98.71  Aligned_cols=74  Identities=18%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             cccccCccccccCcccccCCCCCCCCcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCchhHHHhhhcCccc
Q 007072          280 TSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGESAIEILESLPTLC  359 (619)
Q Consensus       280 ~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~~~~~il~~lp~L~  359 (619)
                      ..++++.|.+...++..+.  .+++|+.|++++|.+....     ..+..+++|+.|+++.|..-+.-. ..+..+++|+
T Consensus       200 ~~l~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~l~~~~-----~~~~~~~~L~~L~Ls~N~l~g~iP-~~l~~L~~L~  271 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLH  271 (313)
T ss_dssp             SEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEECCC-GGGGGCTTCC
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccc-----cccccccccccccCccCeecccCC-hHHhCCCCCC
Confidence            3566666666655555554  7899999999999886433     247788999999998876432111 2245566666


Q ss_pred             cc
Q 007072          360 TL  361 (619)
Q Consensus       360 ~L  361 (619)
                      .|
T Consensus       272 ~L  273 (313)
T d1ogqa_         272 SL  273 (313)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.46  E-value=1.3e-08  Score=102.74  Aligned_cols=192  Identities=19%  Similarity=0.169  Sum_probs=120.7

Q ss_pred             CceeeeecccCCCCccccccc-cccCCCCCccEeecCCCcccchhh--HHHH---------HhcccccceeecCCCcccc
Q 007072          154 GTVKWLELEDADIGDDMLLSL-NLSSKFPDLQALSLCGNKLETVEI--IVQE---------VTKLKNLRALWLNNNPVLK  221 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~li~l-~l~~~~p~L~~L~Ls~NkL~~~~~--v~~~---------l~~L~~Lk~L~Ls~Npi~~  221 (619)
                      ..++.|+|++|.|.......+ .....+++|+.|+|++|.+.....  +...         ..+.+.|+.|.+++|.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            568889999999887422222 122467899999999998764321  1111         2457789999999998765


Q ss_pred             cccchhhhHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcc----ccc
Q 007072          222 KCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVN----KAF  297 (619)
Q Consensus       222 ~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~----~~f  297 (619)
                      ..-. .....+..++.|+.++++..+-... ++..           -+........+|+.|+|++|.+..--.    ..+
T Consensus       173 ~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~-g~~~-----------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         173 GSMK-EWAKTFQSHRLLHTVKMVQNGIRPE-GIEH-----------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             GGHH-HHHHHHHHCTTCCEEECCSSCCCHH-HHHH-----------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             cccc-cccchhhhhhhhccccccccccccc-cccc-----------chhhhhcchhhhcccccccccccccccccccccc
Confidence            4311 2234456788899888765332110 0000           001112246688899999998764211    223


Q ss_pred             CCCCCCCCcccccCCCCCCccchHHHHHHHhC--CCCCccccccCCCCCCchh----HHHh-hhcCccccc
Q 007072          298 SPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG--FPCLQSLGVDIPGPLGESA----IEIL-ESLPTLCTL  361 (619)
Q Consensus       298 ~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~--~~~L~sL~ld~p~~l~~~~----~~il-~~lp~L~~L  361 (619)
                      .  .+++|+.|+|++|.|.+..+..+...+..  .+.|++|++..|. ++...    .+.+ ..+++|+.|
T Consensus       240 ~--~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L  307 (344)
T d2ca6a1         240 K--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFL  307 (344)
T ss_dssp             G--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEE
T ss_pred             c--ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEE
Confidence            3  68899999999999988777677777765  4679999998876 44433    3333 256777766

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.2e-08  Score=98.52  Aligned_cols=51  Identities=24%  Similarity=0.374  Sum_probs=37.6

Q ss_pred             CcccccccCccccccCcc----cccCCCCCCCCcccccCCCCCCccchHHHHHHHhC
Q 007072          277 QSVTSLDLSNRCIHNLVN----KAFSPAEMPSLSHLNIRGNPLEQNSVRELLEVLKG  329 (619)
Q Consensus       277 ~~L~~LdLS~N~I~~Lp~----~~f~~~~L~~L~~LnLs~N~i~~i~~~~l~~~l~~  329 (619)
                      .+|+.|+|++|.|+...-    ..++  .+++|++|++++|.|.+..+..+...+..
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~--~~~~L~~L~L~~N~i~~~~~~~l~~~l~~  138 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSDNLLGDAGLQLLCEGLLD  138 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTT--SCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             CCCCEEECCCCCccccccccccchhh--ccccccccccccccchhhhhhhhhhcccc
Confidence            468999999999975432    2333  78999999999999987766555554433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.42  E-value=2.8e-07  Score=90.77  Aligned_cols=56  Identities=23%  Similarity=0.302  Sum_probs=45.5

Q ss_pred             ceeeeecccCCCCccccccccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccc
Q 007072          155 TVKWLELEDADIGDDMLLSLNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       155 ~l~~L~Ls~~~I~~~~li~l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      .++.|+|++++|..   +|    .-.|+|++|+|++|+|+++|.      .+.+|+.|++++|.+....
T Consensus        39 ~l~~LdLs~~~L~~---lp----~~~~~L~~L~Ls~N~l~~lp~------~~~~L~~L~l~~n~l~~l~   94 (353)
T d1jl5a_          39 QAHELELNNLGLSS---LP----ELPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALS   94 (353)
T ss_dssp             TCSEEECTTSCCSC---CC----SCCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCC
T ss_pred             CCCEEEeCCCCCCC---CC----CCCCCCCEEECCCCCCccccc------chhhhhhhhhhhcccchhh
Confidence            57789999999987   55    236899999999999999873      3678999999999876543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1e-07  Score=96.89  Aligned_cols=177  Identities=16%  Similarity=0.120  Sum_probs=111.1

Q ss_pred             CceeeeecccCCCCccc--cccccccCCCCCccEeecCCCcccchhh--HHHHHhcccccceeecCCCcccccccchhhh
Q 007072          154 GTVKWLELEDADIGDDM--LLSLNLSSKFPDLQALSLCGNKLETVEI--IVQEVTKLKNLRALWLNNNPVLKKCDHCMED  229 (619)
Q Consensus       154 ~~l~~L~Ls~~~I~~~~--li~l~l~~~~p~L~~L~Ls~NkL~~~~~--v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~  229 (619)
                      ..++.+.+++|.+.+..  ..........+.|+.|+|++|.+.....  ....+..++.++.+++++|++....-..+..
T Consensus       226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~  305 (460)
T d1z7xw1         226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  305 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence            44556667776655421  1122333466788888888887765542  3345677888888888888876432112222


Q ss_pred             HHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCcccccc-----CcccccCCCCCCC
Q 007072          230 AILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHN-----LVNKAFSPAEMPS  304 (619)
Q Consensus       230 ~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~-----Lp~~~f~~~~L~~  304 (619)
                      ........|+.++++.+.-... .+            ..+........+|+.||||+|.|..     +...++.  ..+.
T Consensus       306 ~l~~~~~~L~~l~l~~~~l~~~-~~------------~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~--~~~~  370 (460)
T d1z7xw1         306 TLLEPGCQLESLWVKSCSFTAA-CC------------SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ--PGSV  370 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGG-GH------------HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS--TTCC
T ss_pred             cccccccccccccccccchhhh-hh------------hhcccccccccchhhhheeeecccCcccchhhhhhhc--ccCC
Confidence            2333455677776654432110 00            0000001124579999999999864     3333333  5678


Q ss_pred             CcccccCCCCCCccchHHHHHHHhCCCCCccccccCCCCCCc
Q 007072          305 LSHLNIRGNPLEQNSVRELLEVLKGFPCLQSLGVDIPGPLGE  346 (619)
Q Consensus       305 L~~LnLs~N~i~~i~~~~l~~~l~~~~~L~sL~ld~p~~l~~  346 (619)
                      |++|+|++|.|.+.....+...+..+++|++|+++.|. ++.
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~-i~~  411 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGD  411 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCH
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc-CCH
Confidence            99999999999887777777888999999999999884 443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.18  E-value=8.4e-07  Score=87.19  Aligned_cols=99  Identities=15%  Similarity=0.087  Sum_probs=71.5

Q ss_pred             CCccEeecCCCcccchhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCcccccccccccccccccccccccc
Q 007072          181 PDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALGFCGEV  260 (619)
Q Consensus       181 p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~  260 (619)
                      .+++.|+|++|.|+.+|.      -+++|+.|+|++|.+....         ..+.+|+.|++...+..           
T Consensus        38 ~~l~~LdLs~~~L~~lp~------~~~~L~~L~Ls~N~l~~lp---------~~~~~L~~L~l~~n~l~-----------   91 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE------LPPHLESLVASCNSLTELP---------ELPQSLKSLLVDNNNLK-----------   91 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS------CCTTCSEEECCSSCCSSCC---------CCCTTCCEEECCSSCCS-----------
T ss_pred             cCCCEEEeCCCCCCCCCC------CCCCCCEEECCCCCCcccc---------cchhhhhhhhhhhcccc-----------
Confidence            368899999999999873      3689999999999988663         23456666665432211           


Q ss_pred             cCCCCCCccccCCCcCCcccccccCccccccCcccccCCCCCCCCcccccCCCCCCccc
Q 007072          261 YDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKAFSPAEMPSLSHLNIRGNPLEQNS  319 (619)
Q Consensus       261 ~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~f~~~~L~~L~~LnLs~N~i~~i~  319 (619)
                             .+.   .-...|+.|||++|.|..+|.  +.  .+++|+.|++++|.+....
T Consensus        92 -------~l~---~lp~~L~~L~L~~n~l~~lp~--~~--~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_          92 -------ALS---DLPPLLEYLGVSNNQLEKLPE--LQ--NSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             -------CCC---SCCTTCCEEECCSSCCSSCCC--CT--TCTTCCEEECCSSCCSCCC
T ss_pred             -------hhh---hhccccccccccccccccccc--hh--hhccceeeccccccccccc
Confidence                   000   112468899999999998875  33  6889999999999887655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.6e-07  Score=82.21  Aligned_cols=87  Identities=24%  Similarity=0.324  Sum_probs=69.6

Q ss_pred             CCceeeeecccCCCCcccccc-ccccCCCCCccEeecCCCcccchhhHHHHHhcccccceeecCCCccccccc--chhhh
Q 007072          153 DGTVKWLELEDADIGDDMLLS-LNLSSKFPDLQALSLCGNKLETVEIIVQEVTKLKNLRALWLNNNPVLKKCD--HCMED  229 (619)
Q Consensus       153 ~~~l~~L~Ls~~~I~~~~li~-l~l~~~~p~L~~L~Ls~NkL~~~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~--~~~~~  229 (619)
                      ...+++|+|++|+|.+  +.+ ......+|+|+.|+|++|.|++++... .+. ..+|+.|+|++||+.....  .....
T Consensus        64 ~~~L~~L~Ls~N~i~~--l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~-~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          64 IPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERELD-KIK-GLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             CTTCCCCCCCSSCCCC--CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHH-HHT-TCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             CCCCCEeeCCCccccC--CchhHHHHhhCCcccccccccCccccchhhh-hhh-ccccceeecCCCCcCcCcccchhHHH
Confidence            5789999999999998  323 234568999999999999999998653 344 4579999999999987542  24566


Q ss_pred             HHhhcCCccccccc
Q 007072          230 AILQGCPKLEIYNS  243 (619)
Q Consensus       230 ~il~~lP~LeiLn~  243 (619)
                      .+.+.||+|+.||-
T Consensus       140 ~i~~~~P~L~~LDg  153 (162)
T d1koha1         140 AIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHTTSTTCCEETT
T ss_pred             HHHHHCCCCCEECc
Confidence            78899999999983

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.85  E-value=9e-06  Score=74.29  Aligned_cols=121  Identities=9%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             CCCCccEeecCCC-cccc--hhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGN-KLET--VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALG  255 (619)
Q Consensus       179 ~~p~L~~L~Ls~N-kL~~--~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~  255 (619)
                      +.|+|+.|+|+++ .|..  +..+...+...++|+.|+|++|.+....-..+.+. +.                      
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~-L~----------------------   69 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL-IE----------------------   69 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHH-HH----------------------
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhh-hh----------------------
Confidence            3466777777664 3433  23345566667777777777776553321111100 11                      


Q ss_pred             ccccccCCCCCCccccCCCcCCcccccccCccccccCccc-cc-CCCCCCCCcccccCCCCCCccc---hHHHHHHHhCC
Q 007072          256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK-AF-SPAEMPSLSHLNIRGNPLEQNS---VRELLEVLKGF  330 (619)
Q Consensus       256 fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~-~f-~~~~L~~L~~LnLs~N~i~~i~---~~~l~~~l~~~  330 (619)
                                         ....|+.|+|++|.|..-.-. ++ .....++|++|+|++|.+..+.   ...+...+...
T Consensus        70 -------------------~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n  130 (167)
T d1pgva_          70 -------------------TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN  130 (167)
T ss_dssp             -------------------HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC
T ss_pred             -------------------hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhC
Confidence                               123455666666665532111 11 1225677888888888766654   34467778888


Q ss_pred             CCCccccccCC
Q 007072          331 PCLQSLGVDIP  341 (619)
Q Consensus       331 ~~L~sL~ld~p  341 (619)
                      ++|+.|.++..
T Consensus       131 ~sL~~l~l~~~  141 (167)
T d1pgva_         131 ESLLRVGISFA  141 (167)
T ss_dssp             SSCCEEECCCC
T ss_pred             CCccEeeCcCC
Confidence            88888876554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.58  E-value=2.5e-05  Score=70.72  Aligned_cols=121  Identities=14%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             CCCCccEeecCCC-cccc--hhhHHHHHhcccccceeecCCCcccccccchhhhHHhhcCCccccccccccccccccccc
Q 007072          179 KFPDLQALSLCGN-KLET--VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCMEDAILQGCPKLEIYNSNFTINFGEWALG  255 (619)
Q Consensus       179 ~~p~L~~L~Ls~N-kL~~--~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~~~il~~lP~LeiLn~~~T~n~~~~~l~  255 (619)
                      +.|+|+.|+|+++ .|+.  +..++.++.+.++|+.|+|++|.+....-..+. ..++..                    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~-~~l~~~--------------------   73 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA-EMLKVN--------------------   73 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH-HHHHHC--------------------
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHH-HHHhhc--------------------
Confidence            4467777777763 4433  334566677777788888887776543311111 111222                    


Q ss_pred             ccccccCCCCCCccccCCCcCCcccccccCccccccCccc-cc-CCCCCCCCcc--cccCCCCCCccchHHHHHHHhCCC
Q 007072          256 FCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNK-AF-SPAEMPSLSH--LNIRGNPLEQNSVRELLEVLKGFP  331 (619)
Q Consensus       256 fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~-~f-~~~~L~~L~~--LnLs~N~i~~i~~~~l~~~l~~~~  331 (619)
                                           .+++.|++++|.+..-.-. ++ .....++|+.  |++++|.+.+.....+...+..++
T Consensus        74 ---------------------~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~  132 (166)
T d1io0a_          74 ---------------------NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT  132 (166)
T ss_dssp             ---------------------SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS
T ss_pred             ---------------------ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCC
Confidence                                 2344455555544321110 00 0115677765  555778887766667778888999


Q ss_pred             CCccccccCC
Q 007072          332 CLQSLGVDIP  341 (619)
Q Consensus       332 ~L~sL~ld~p  341 (619)
                      +|+.|+++.+
T Consensus       133 ~L~~L~l~~~  142 (166)
T d1io0a_         133 TLLKFGYHFT  142 (166)
T ss_dssp             SCCEEECCCS
T ss_pred             CcCEEeCcCC
Confidence            9999987654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=5e-05  Score=69.17  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=82.9

Q ss_pred             CCceeeeecccC-CCCcccccccc-ccCCCCCccEeecCCCcccc--hhhHHHHHhcccccceeecCCCcccccccchhh
Q 007072          153 DGTVKWLELEDA-DIGDDMLLSLN-LSSKFPDLQALSLCGNKLET--VEIIVQEVTKLKNLRALWLNNNPVLKKCDHCME  228 (619)
Q Consensus       153 ~~~l~~L~Ls~~-~I~~~~li~l~-l~~~~p~L~~L~Ls~NkL~~--~~~v~~~l~~L~~Lk~L~Ls~Npi~~~~~~~~~  228 (619)
                      ...++.|.|+++ .|.++.+..+. .....+.|++|+|++|.|.+  ...++..+...++|+.|+|++|.+....    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g----~   89 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL----L   89 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH----H
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH----H
Confidence            578999999985 58775443332 23467899999999999986  4556678889999999999999987643    1


Q ss_pred             hHHhhcCCcccccccccccccccccccccccccCCCCCCccccCCCcCCcccccccCccccccCcccc---cC--CCCCC
Q 007072          229 DAILQGCPKLEIYNSNFTINFGEWALGFCGEVYDKDNPSSLCLRDRPLQSVTSLDLSNRCIHNLVNKA---FS--PAEMP  303 (619)
Q Consensus       229 ~~il~~lP~LeiLn~~~T~n~~~~~l~fc~~~~~~~~p~~l~~~~~~L~~L~~LdLS~N~I~~Lp~~~---f~--~~~L~  303 (619)
                      ..+...+                                      ..-.+|+.|+|++|++..+....   +.  ....+
T Consensus        90 ~~l~~aL--------------------------------------~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~  131 (167)
T d1pgva_          90 ARLLRST--------------------------------------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE  131 (167)
T ss_dssp             HHHHHHT--------------------------------------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS
T ss_pred             HHHHHHH--------------------------------------HhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCC
Confidence            1111111                                      01246788888888777664321   10  11468


Q ss_pred             CCcccccCCCCC
Q 007072          304 SLSHLNIRGNPL  315 (619)
Q Consensus       304 ~L~~LnLs~N~i  315 (619)
                      +|+.|+++.+..
T Consensus       132 sL~~l~l~~~~~  143 (167)
T d1pgva_         132 SLLRVGISFASM  143 (167)
T ss_dssp             SCCEEECCCCCH
T ss_pred             CccEeeCcCCCc
Confidence            899999987754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.21  E-value=0.00097  Score=59.79  Aligned_cols=73  Identities=12%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             cCCCceeeeeccc-CCCCcccccccccc-CCCCCccEeecCCCcccch--hhHHHHHhcccccceeecCCCcccccc
Q 007072          151 KGDGTVKWLELED-ADIGDDMLLSLNLS-SKFPDLQALSLCGNKLETV--EIIVQEVTKLKNLRALWLNNNPVLKKC  223 (619)
Q Consensus       151 ~g~~~l~~L~Ls~-~~I~~~~li~l~l~-~~~p~L~~L~Ls~NkL~~~--~~v~~~l~~L~~Lk~L~Ls~Npi~~~~  223 (619)
                      .++..++.|.|++ +.|.+.....+.-+ ...+.|+.|+|++|.|.+.  ..+...+...++|+.|++++|++....
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            3568999999998 56888544443332 4789999999999998653  445568888999999999999987543

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=96.00  E-value=0.0022  Score=54.78  Aligned_cols=49  Identities=18%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             eEeccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccc
Q 007072          423 WYVMDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL  480 (619)
Q Consensus       423 WYvmDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~  480 (619)
                      +++..-.|+-++||.+||++..+   .+.      ...-.+.-++||++|||+|-||-
T Consensus        58 ~~~~~~~~~~~NHsc~pN~~~~~---~~~------~~~~~~~A~rdI~~GEEL~~dYg  106 (119)
T d2g46a1          58 SAMALGFGAIFNHSKDPNARHEL---TAG------LKRMRIFTIKPIAIGEEITISYG  106 (119)
T ss_dssp             EEECCSTTSSCCCCSSCCCEEEE---CSS------SSEEEEECSSCBCTTEEECCCCC
T ss_pred             cceecCCeEEEEecCCcCceEEE---ECC------CCEEEEEECcccCCCCEEEEecC
Confidence            56666789999999999998743   233      23445677999999999999984

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.012  Score=53.45  Aligned_cols=49  Identities=20%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             ccccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccc
Q 007072          426 MDELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFL  480 (619)
Q Consensus       426 mDE~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~  480 (619)
                      ++.+|.-|+||.+||+....+.....      ...-.++-++||++|||+|=||=
T Consensus        95 ~g~~~rfiNHsc~pN~~~~~~~~~~~------~~~i~~~A~RdI~~GEEL~~dYG  143 (171)
T d2f69a2          95 CASLGHKANHSFTPNCIYDMFVHPRF------GPIKCIRTLRAVEADEELTVAYG  143 (171)
T ss_dssp             CSCCGGGCEECSSCSEEEEEEEETTT------EEEEEEEESSCBCTTCEEEECCC
T ss_pred             ccCcceeeEccCCCCceEEEEEecCC------CeEEEEEEccCcCCCCEEEEEeC
Confidence            45678899999999998766543332      34455888999999999999973

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=92.63  E-value=0.031  Score=54.71  Aligned_cols=53  Identities=21%  Similarity=0.261  Sum_probs=39.0

Q ss_pred             ccccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCC
Q 007072          428 ELGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGI  483 (619)
Q Consensus       428 E~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~  483 (619)
                      .+|.-|+||-+||+.+.+.+.--.   ..+...-.++-++||++|||+|=||-++.
T Consensus       211 N~aRfiNHSC~PN~~~~~v~~~~~---~~~~~~i~~~A~rdI~~GEELt~dYg~~~  263 (284)
T d1ml9a_         211 GPTRFINHSCDPNMAIFARVGDHA---DKHIHDLALFAIKDIPKGTELTFDYVNGL  263 (284)
T ss_dssp             CGGGGCEECSSCSEEEEEEESSGG---GGGGCEEEEEESSCBCTTCEEEECTTC--
T ss_pred             chhheeeccccCCcceEEEEeccC---CCCceEEEEEECCccCCCCEEEEecCCCC
Confidence            367889999999999876532111   11356667889999999999999998654

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.44  E-value=0.053  Score=52.82  Aligned_cols=53  Identities=15%  Similarity=0.137  Sum_probs=39.3

Q ss_pred             cccccccCCCCCceeeceeeccCCCCCCceEEEEEeeccccCCCCccccccccCCC
Q 007072          429 LGSAVRHSDEPNFRVAPFLFMPEGKLSSAVSFSILWPIQNVYKRDECTRDFLYGIG  484 (619)
Q Consensus       429 ~GsaI~HSd~PN~r~~Pf~~~p~~~~~~~~sySllwPi~di~~gdevTRD~~~~~~  484 (619)
                      ++.-|+||-+||+.+.+++.--.   ..+...-.++-++||++|||+|=||-++..
T Consensus       212 ~aRFiNHSC~PN~~~~~v~~~~~---~~~~~~i~~fA~rdI~~GEELt~DYG~~~d  264 (269)
T d1mvha_         212 VSRFFNHSCSPNIAIYSAVRNHG---FRTIYDLAFFAIKDIQPLEELTFDYAGAKD  264 (269)
T ss_dssp             GGGGCEECSSCSEEEEEEESCTT---CTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred             ceEEeecCCCCCcEEEEEEecCC---cCccceEEEEECCccCCCCEEEEecCCCcC
Confidence            45568999999999877643211   113455678899999999999999866544