Citrus Sinensis ID: 007076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
Protein Sequence
MSGDKRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccEEEEEEccccccEEEEEcccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccEEcccccccccccccccccccHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHcHHHHHHHcHHcccHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccEEEcHHHHHHHccccEEccccccHHHHHHHHHHHcccEEEEEcccEEEEEEccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccHccccccccccccHcccccccccccccccccHHHHHHHHHccccccccEEEEEEEcccccEEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHEEEEEcccccccccccEEEEEccccccEEEEEEEccccHHHHHHHHHHcccHHHHHcccEEccccccHHHHHHHHccHHHHHHHHHHccccHEEEEEcccccEEEEEEEEEEEEEEEEccccccccHHHEEHHcccccHHHHHHcccHHHHHHHccccccccEEccccccccccHHHHHHccccccccEEEEcHHHHHHHHHHHEccccccccccccccccccEEEEEEccccccccEEcccccEEEEEEEcccccEccccEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHccccccEEEEEcEcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHcccccEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msgdkrrawadttplldqkhrssispiyntnriSYAAGGLLemayatapparsrsvflgvdvgtgsaraglfdesgkllgsasspiqiwkegdcieqsSTDIWHAICAAVDSACslanvdgeevkgvgFAATcslvdadgspvsvswngdsrrNIIVWMDHRAVKQAekinsrnspvlqycggavspemqppklLWVKENLQESWSMVFRWMDLSdwlsyratgddtrsLCTTVCKWTYLGHAHMQQMNEKGFrdmeacgwddefweeiglgdlidghhakigrsvafpghplgsgltpaaakelglvpgtpvgtslidahaggvgvmesvpesvsEAKENEEEAICHRMVLVCgtstchmavsrnklfipgvwgpfwsamvpkfwlteggqsatGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESmihernspfvaALTEDihvlpdfhgnrspiadpkskgiicgmtLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLacgglaknplflqqhadiigcpiilprenesVLLGAAILGAVAAKRYSSLIEAMKAMNAagqvihpskdpkvkkyhdAKYLIFRELFEQQVSQRSIMAQALA
Flexible Loop (DISEMBL)
msgdkrrawadttplldqkhrssispiyntNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCslvdadgspvsvswngdsrrNIIVWMDHRAVKQaekinsrnspVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAgqvihpskdpkvkkYHDAKYLIFRELFEQQVSQRSIMAQALA
Low Complexity Region (SEG)
MSGDKRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPesvseakeneeeaICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVasrslanraasrHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESvllgaailgavaaKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Disordered region (IsUnstruct)
***********************ISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV*****************AICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIA**KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIH*****KVKKYHDAKYLIFRELFE**************
Disordered Region (DISOPRED)
**************LL***************************************VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM*********AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQAL*
Disordered Region (DISEMBL)
*********ADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM**************EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Disordered Region (DISPRO)
***********TTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGDKRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	619	2.2.26 [Sep-21-2011]
Q6DCD1	550	FGGY carbohydrate kinase	N/A	no	0.861	0.969	0.482	1e-149
A2AJL3	552	FGGY carbohydrate kinase	yes	no	0.861	0.965	0.489	1e-148
Q96C11	551	FGGY carbohydrate kinase	yes	no	0.869	0.976	0.485	1e-147
Q6NUW9	545	FGGY carbohydrate kinase	yes	no	0.862	0.979	0.459	1e-134
Q04585	715	Uncharacterized sugar kin	yes	no	0.859	0.744	0.369	2e-99
Q65GC1	552	Ribulokinase OS=Bacillus	yes	no	0.814	0.913	0.269	1e-40
Q8NXY1	545	Ribulokinase OS=Staphyloc	yes	no	0.756	0.858	0.269	9e-40
Q6GBT5	545	Ribulokinase OS=Staphyloc	yes	no	0.756	0.858	0.269	9e-40
Q49V87	542	Ribulokinase 2 OS=Staphyl	yes	no	0.773	0.883	0.263	1e-39
Q2YSA9	545	Ribulokinase OS=Staphyloc	yes	no	0.756	0.858	0.269	3e-39

>sp|Q6DCD1|FGGY_XENLA FGGY carbohydrate kinase domain-containing protein OS=Xenopus laevis GN=fggy PE=2 SV=2

 Score =  527 bits (1358), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/566 (48%), Positives = 367/566 (64%), Gaps = 33/566 (5%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
           ++G+DVGT S R  L D+ G ++      I+IW+ + D  EQSS DIW A C        
Sbjct: 11  YVGIDVGTASVRVALVDQFGTVVDQVEQSIKIWEPQPDHYEQSSDDIWAACCQVTKQV-- 68

Query: 116 LANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
           +   D   ++G+GF ATCSLV  D    P++V+  G+ +RNII+WMDHRA  Q ++IN  
Sbjct: 69  VRTKDPRCIRGLGFDATCSLVVLDTQFQPLAVNSQGEHKRNIIMWMDHRAGCQVDRINRT 128

Query: 174 NSPVLQYCGGAVSPEMQPPKLLWVKENL-QESWSMVFRWMDLSDWLSYRATGDDTRSLCT 232
           N  VL+Y GG +S EMQPPKLLW+KENL +E W+   +  DL D+L+++ATGD+TRS CT
Sbjct: 129 NHKVLRYVGGVMSVEMQPPKLLWLKENLREECWNKSGQLFDLPDFLTWKATGDNTRSFCT 188

Query: 233 TVCKWTY-LGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 291
            VCKWTY L H                 GWDD FW+EIGL D+ +G++ KIG  V  PG 
Sbjct: 189 LVCKWTYSLDH-----------------GWDDSFWKEIGLEDICEGNYVKIGNQVMSPGA 231

Query: 292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSE-AKENEEEAICHRM 350
            +G+ LT  AAKELGL  G PV  SLIDAHAGG+GV+ +   S+ E   E E   I  R+
Sbjct: 232 SIGNCLTATAAKELGLPEGLPVAASLIDAHAGGLGVIGA---SLKEYGLEGENHPITSRL 288

Query: 351 VLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASR 410
            L+CGTS+CHM +S   +F+PGVWGP++SAM+P  WL EGGQSATG L+D+++  H+A  
Sbjct: 289 ALICGTSSCHMGISEKPIFVPGVWGPYYSAMIPGLWLNEGGQSATGKLIDHVVHGHIAFM 348

Query: 411 SLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKG 470
            L N+A +R   ++  LN  L+ +   + S  V  L  D+HV PDFHGNRSP+AD   KG
Sbjct: 349 ELENQAKARGQHIYTYLNNHLDKI---KKSGPVGFLAADLHVWPDFHGNRSPLADLTMKG 405

Query: 471 IICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQ 530
           ++ G+TL  S   LA LYLAT+Q IA GTRHI+E     GH I TL  CGGL+KNPLF+Q
Sbjct: 406 MVVGLTLSKSLDDLATLYLATIQAIALGTRHILETMQTAGHHISTLYLCGGLSKNPLFVQ 465

Query: 531 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK 590
            HADI G P++L +E ESVL+GAAILGA A+  + S+ EAM+ M+  G++I P+ +   K
Sbjct: 466 MHADITGLPVVLSKEVESVLVGAAILGACASGDFPSIKEAMEKMSKVGKIIFPNHED--K 523

Query: 591 KYHDAKYLIFRELFEQQVSQRSIMAQ 616
           +++D KY +F +L   Q   ++IM +
Sbjct: 524 RFYDKKYEVFLKLSSHQKEYQAIMGR 549

Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

>sp|A2AJL3|FGGY_MOUSE FGGY carbohydrate kinase domain-containing protein OS=Mus musculus GN=Fggy PE=2 SV=1

 Score =  525 bits (1353), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/562 (48%), Positives = 364/562 (64%), Gaps = 29/562 (5%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
           ++G+DVGTGS RA L D+ G LL  A  PI+ W+ + +  EQSS DIW A C        
Sbjct: 13  YVGIDVGTGSVRAALVDQRGLLLAFAEQPIKKWEPQFNHHEQSSEDIWAACCLVTKEV-- 70

Query: 116 LANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
           +  +D   ++G+GF ATCSLV  D +  P+ V+  GDS RN+I+W+DHRAV Q  +IN  
Sbjct: 71  VQGIDAHRIRGLGFDATCSLVVLDKEFHPLPVNHEGDSSRNVIMWLDHRAVSQVHRINET 130

Query: 174 NSPVLQYCGGAVSPEMQPPKLLWVKENLQE-SWSMVFRWMDLSDWLSYRATGDDTRSLCT 232
              VLQY GG +S EMQ PKLLW+KENL+E  W     + DL D+LS++ATG   RSLC+
Sbjct: 131 KHRVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCS 190

Query: 233 TVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHP 292
            VCKWTY          EKG        WDD FW+ IGL DLID +++KIG  V  PG  
Sbjct: 191 LVCKWTYSA--------EKG--------WDDSFWKMIGLEDLIDDNYSKIGNLVLLPGAA 234

Query: 293 LGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVL 352
           LG GLTP AA+ELGL  G  V  SLIDAHAGG+GV+ +  +        E + +  R+ +
Sbjct: 235 LGIGLTPEAARELGLPSGIAVAASLIDAHAGGLGVIGA--DVRGHGLTCEGQPVTSRLAV 292

Query: 353 VCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSL 412
           +CGTS+CHM +S++ +F+PGVWGP++SAMVP FWL EGGQS TG L+D++++ H A   L
Sbjct: 293 ICGTSSCHMGISKDPVFVPGVWGPYYSAMVPGFWLNEGGQSVTGKLIDHMVQGHPAFPEL 352

Query: 413 ANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGII 472
             +A +R  S++  LN  L+ +   + +  V  LT D+HV PDFHGNRSP+AD   KG++
Sbjct: 353 QAKATARCQSIYAYLNSHLDLI---KKAQPVGFLTVDLHVWPDFHGNRSPLADLTLKGMV 409

Query: 473 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQH 532
            G+TL      LA+LYLATVQ IA+GTR I+E   A GH + TL  CGGL+KNPLF+Q H
Sbjct: 410 TGLTLSQDLDDLAILYLATVQAIAFGTRFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMH 469

Query: 533 ADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY 592
           ADI G P++L +E ESVL+GAAILGA A+  ++S+ EAM  M+  G+V+ P      KKY
Sbjct: 470 ADITGMPVVLSQEVESVLVGAAILGACASGDFTSVQEAMARMSKVGKVVFPEHAD--KKY 527

Query: 593 HDAKYLIFRELFEQQVSQRSIM 614
           +D KY +F  + E Q    +IM
Sbjct: 528 YDKKYQVFLRMVEHQKEYSAIM 549

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q96C11|FGGY_HUMAN FGGY carbohydrate kinase domain-containing protein OS=Homo sapiens GN=FGGY PE=1 SV=2

 Score =  524 bits (1349), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/567 (48%), Positives = 367/567 (64%), Gaps = 29/567 (5%)

Query: 52  RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAV 110
           +    ++GVDVGTGS RA L D+SG LL  A  PI+ W+ + +  EQSS DIW A C   
Sbjct: 7   KPERYYVGVDVGTGSVRAALVDQSGVLLAFADQPIKNWEPQFNHHEQSSEDIWAACCVVT 66

Query: 111 DSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 168
                +  +D  +++G+GF ATCSLV  D    P+ V+  GDS RN+I+W+DHRAV Q  
Sbjct: 67  KKV--VQGIDLNQIRGLGFDATCSLVVLDKQFHPLPVNQEGDSHRNVIMWLDHRAVSQVN 124

Query: 169 KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQE-SWSMVFRWMDLSDWLSYRATGDDT 227
           +IN     VLQY GG +S EMQ PKLLW+KENL+E  W     + DL D+LS++ATG   
Sbjct: 125 RINETKHSVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTA 184

Query: 228 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 287
           RSLC+ VCKWTY          EKG        WDD FW+ IGL D +  +++KIG  V 
Sbjct: 185 RSLCSLVCKWTYSA--------EKG--------WDDSFWKMIGLEDFVADNYSKIGNQVL 228

Query: 288 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 347
            PG  LG+GLTP AA++LGL+PG  V  SLIDAHAGG+GV+ +  +        E + + 
Sbjct: 229 PPGASLGNGLTPEAARDLGLLPGIAVAASLIDAHAGGLGVIGA--DVRGHGLICEGQPVT 286

Query: 348 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHV 407
            R+ ++CGTS+CHM +S++ +F+PGVWGP++SAMVP FWL EGGQS TG L+D++++ H 
Sbjct: 287 SRLAVICGTSSCHMGISKDPIFVPGVWGPYFSAMVPGFWLNEGGQSVTGKLIDHMVQGHA 346

Query: 408 ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 467
           A   L  +A +R  S++  LN  L+ +  ++  P V  LT D+HV PDFHGNRSP+AD  
Sbjct: 347 AFPELQVKATARCQSIYAYLNSHLDLI--KKAQP-VGFLTVDLHVWPDFHGNRSPLADLT 403

Query: 468 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL 527
            KG++ G+ L      LA+LYLATVQ IA GTR I+E   A GH I TL  CGGL+KNPL
Sbjct: 404 LKGMVTGLKLSQDLDDLAILYLATVQAIALGTRFIIEAMEAAGHSISTLFLCGGLSKNPL 463

Query: 528 FLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP 587
           F+Q HADI G P++L +E ESVL+GAA+LGA A+  ++S+ EAM  M+  G+V+ P    
Sbjct: 464 FVQMHADITGMPVVLSQEVESVLVGAAVLGACASGDFASVQEAMAKMSKVGKVVFPRLQD 523

Query: 588 KVKKYHDAKYLIFRELFEQQVSQRSIM 614
             KKY+D KY +F +L E Q    +IM
Sbjct: 524 --KKYYDKKYQVFLKLVEHQKEYLAIM 548

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q6NUW9|FGGY_DANRE FGGY carbohydrate kinase domain-containing protein OS=Danio rerio GN=fggy PE=2 SV=2

 Score =  477 bits (1228), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/562 (45%), Positives = 352/562 (62%), Gaps = 28/562 (4%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAVDSACS 115
           ++GVDVG+ S RA L    G+L  +A  PI + +   D  EQSST+IW   C  V     
Sbjct: 6   YVGVDVGSASVRAALVSPDGQLRRTAEEPIAVHEPCVDHYEQSSTEIWSKCCQTVKRVTE 65

Query: 116 LANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
              VD   V+G+GF  TCSLV  D    P++V+  G   RN+++WMDHRA  QA +I + 
Sbjct: 66  --GVDAACVRGIGFDGTCSLVVLDQQFRPLAVNLAGVCDRNVVMWMDHRAAAQASRITAC 123

Query: 174 NSPVLQYCGGAVSPEMQPPKLLWVKENLQES-WSMVFRWMDLSDWLSYRATGDDTRSLCT 232
              +LQ  GG +SPE+QPPKLLW+KENL +S W+    + DL D+LS++ATG  +RSLCT
Sbjct: 124 RHTLLQRVGGVMSPEIQPPKLLWLKENLPDSCWTRAAHFFDLPDFLSWKATGSLSRSLCT 183

Query: 233 TVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHP 292
            VCKWTY                    GWDD FW  IGL DLI+  +A+IG  V  PG  
Sbjct: 184 LVCKWTYSASE----------------GWDDTFWSAIGLEDLIEDSYARIGSQVCCPGAA 227

Query: 293 LGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVL 352
           +G GLT AAA +LGL  GT VG SLIDAHAGG+GV+ +    +      E + +  RM L
Sbjct: 228 VGRGLTAAAAADLGLNEGTAVGASLIDAHAGGIGVLGADVSGLH--LPCEHQPLTARMAL 285

Query: 353 VCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSL 412
           +CGTS+CHMAVSR  L +PGVWGP+ SAM+P  WL EGGQSATG LLD++++ H A R L
Sbjct: 286 ICGTSSCHMAVSREPLLVPGVWGPYLSAMLPGLWLNEGGQSATGKLLDHVVKGHAAFRQL 345

Query: 413 ANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGII 472
             +A      ++  LN  L+ M    ++  +  LT  +H+ PDFHGNRSP+AD  ++G +
Sbjct: 346 EEQAEHSGRHIYTQLNLHLQQM--STDATHLEQLTTHLHIWPDFHGNRSPLADQTARGTV 403

Query: 473 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQH 532
            G++L  +   LALLYLAT+Q +A G+RHI+      GH I TL  CGGL+KN LF+Q H
Sbjct: 404 VGLSLSQTLDDLALLYLATLQALALGSRHIIAAMTEAGHDITTLFLCGGLSKNTLFVQTH 463

Query: 533 ADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY 592
           A+  G P++LP E E+VLLGAA++GA A+   +S+ EAM+ M+  G+V+ P  +P+++ +
Sbjct: 464 ANTTGLPVVLPAEREAVLLGAAVIGACASSDCTSIPEAMRKMSRVGRVVRP--NPELQSF 521

Query: 593 HDAKYLIFRELFEQQVSQRSIM 614
           +  KY +F  L++ Q    S+M
Sbjct: 522 YRRKYSVFLRLYQHQKECVSLM 543

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q04585|YDR09_YEAST Uncharacterized sugar kinase YDR109C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR109C PE=1 SV=1

 Score =  363 bits (932), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/565 (36%), Positives = 317/565 (56%), Gaps = 33/565 (5%)

Query: 48  APPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE-GDCIEQSSTDIWHAI 106
           +P       ++GVDVGTGSARA + D+SG +L  A  PI+  +   + I QSS +IW+A+
Sbjct: 31  SPQDPEAKFYVGVDVGTGSARACVIDQSGNMLSLAEKPIKREQLISNFITQSSREIWNAV 90

Query: 107 CAAVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNG----DSRRNIIVWMDHR 162
           C  V +    + VD E V+G+GF ATCSLV    +       G    ++ +NII+WMDHR
Sbjct: 91  CYCVRTVVEESGVDPERVRGIGFDATCSLVVVSATNFEEIAVGPDFTNNDQNIILWMDHR 150

Query: 163 AVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRA 222
           A+K+ E+INS     L+Y GG +S EM+ PK+ W+K NL+       ++ DL D+L+++A
Sbjct: 151 AMKETEEINSSGDKCLKYVGGQMSVEMEIPKIKWLKNNLEAGIFQDCKFFDLPDYLTFKA 210

Query: 223 TGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 282
           TG + RS C+ VCK  +L       +  +G       GW  EF   IGL +L      ++
Sbjct: 211 TGKENRSFCSAVCKQGFL------PVGVEG----SDIGWSKEFLNSIGLSELTKNDFERL 260

Query: 283 GRSVAFPGHPLGSG-----LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESV-- 335
           G S+    + L +G     L   AA +LGL     V + +IDA+AG VG + + PES   
Sbjct: 261 GGSLREKKNFLTAGECISPLDKKAACQLGLTEHCVVSSGIIDAYAGWVGTVAAKPESAVK 320

Query: 336 ----SEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGG 391
               +E  + +      R+  V GTSTCH+ +S+N +F+ GVWGP+   +   FW  EGG
Sbjct: 321 GLAETENYKKDFNGAIGRLAAVAGTSTCHILLSKNPIFVHGVWGPYRDVLARGFWAAEGG 380

Query: 392 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 451
           QS TG LLD++I  H A   L++ A    VS FE LN  LE+++ +R    V +L + + 
Sbjct: 381 QSCTGVLLDHLITTHPAFTELSHMANLAGVSKFEYLNKILETLVEKRKVRSVISLAKHLF 440

Query: 452 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH 511
              D+HGNRSPIADP  +  I G ++D+S + LA++YL+  + I+  TR I+E     GH
Sbjct: 441 FYGDYHGNRSPIADPNMRACIIGQSMDNSIEDLAVMYLSACEFISQQTRQIIEVMLKSGH 500

Query: 512 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILGAVAAKRYSSLIEA 570
           +I+ +   GG  +N L ++  AD  G PI++PR  + +V+ G+A+LGA A++ +    E 
Sbjct: 501 EINAIFMSGGQCRNSLLMRLLADCTGLPIVIPRYVDAAVVFGSALLGAAASEDFDYTRE- 559

Query: 571 MKAMNAAGQVIHPSKDPKVKKYHDA 595
                  GQ    S   K ++++D+
Sbjct: 560 --KRTLKGQ---KSSQTKTERFNDS 579

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q65GC1|ARAB_BACLD Ribulokinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=araB PE=3 SV=1

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 156/579 (26%), Positives = 254/579 (43%), Gaps = 75/579 (12%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLAN 118
           VDV TG   A    E    +     P+   K   D   Q   D    +   + S    + 
Sbjct: 8   VDVRTGEEIATAVKEYTHGVIDRELPVSKRKLPRDWALQHPADYIEVLEETIPSLLKQSK 67

Query: 119 VDGEEVKGVGFAAT-CSL--VDADGSPVSV--SWNGDSRRNIIVWMDHRAVKQAEKINS- 172
            D +E+ G+G   T C++  VD +G+P+ +   +  +    + +W  H A +QA ++N  
Sbjct: 68  ADPKEIIGIGIDFTACTILPVDENGTPLCMREEYASEPHSYVKLWKHHAAQEQANRLNQI 127

Query: 173 ---RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 229
              RN P LQ  GG +S E   PK++ + E   + +      M+ +DW+ Y   G   R+
Sbjct: 128 AEERNEPFLQTYGGKISSEWLVPKVMQIAEEAPDIYDAAAEIMEAADWIVYMLCGTRKRN 187

Query: 230 LCTTVCK--WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEI--GLGDLIDGHHAKIGRS 285
            CT   K  W           N+ G+         D+F+  +   L +++     K+   
Sbjct: 188 NCTAGYKAIWN----------NKSGYPS-------DDFFASLHPKLKNIV---REKLTED 227

Query: 286 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEE 343
           +   G   G GLT   A + GL+ GT V  + +DAH     VG+ E              
Sbjct: 228 IYSVGEKAG-GLTEEMAGKTGLLAGTAVAVANVDAHVSVPAVGITEP------------- 273

Query: 344 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYII 403
                +M+++ GTSTCHM +  +   +PG+ G     ++P +   E GQS  G    ++I
Sbjct: 274 ----GKMLMIMGTSTCHMLLGEDVRMVPGMCGVVEDGILPGYVGYEAGQSCVGDHFHWLI 329

Query: 404 ENHVASRSLANRAASRHVSLFELLNGTLESM-IHERNSPFVAALTEDIHVLPDFHGNRSP 462
           + H    +    A +  +S++ELL+    S+ I E            +  L  ++GNRS 
Sbjct: 330 Q-HFVPEAYLKEAEAEGISIYELLSQKAGSLQIGESG----------LLALDWWNGNRST 378

Query: 463 IADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL 522
           + D    G++ GMTL +  ++   +Y A V+  AYGTR I+E     G  I+ L A GG+
Sbjct: 379 LVDADLTGMLLGMTLATKPEE---IYRALVEATAYGTRIIIETFRQSGVPIEELYAAGGI 435

Query: 523 A-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR----YSSLIEAMKAMNAA 577
           A KNP  +Q +AD+    I +    ++  LG+AI GA+AA      Y  + EA+  M   
Sbjct: 436 AEKNPFIMQVYADVTNMEIKISGSPQAPALGSAIFGALAAGSMNGGYDHIEEAVAHMGKI 495

Query: 578 GQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQ 616
               +      V  Y D  Y  ++EL+     Q ++M +
Sbjct: 496 KDKTYKPIPENVSLY-DQLYAEYKELYTYFGKQNNVMKR 533

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q8NXY1|ARAB_STAAW Ribulokinase OS=Staphylococcus aureus (strain MW2) GN=araB PE=3 SV=1

 Score =  165 bits (418), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 147/546 (26%), Positives = 255/546 (46%), Gaps = 78/546 (14%)

Query: 55  SVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQ---IWKEGDCIE-------QSSTDIW 103
           S  +G+D GT S R  L + + G+++     P     I  E + ++       Q+S D  
Sbjct: 2   SYSIGIDYGTASGRVFLINTTNGQVVSKFVKPYTHGVIESELNGLKIPHTYALQNSNDYL 61

Query: 104 HAICAAVDSACSLANVDGEEVKGVGFAATCSLV---DADGSPVS--VSWNGDSRRNIIVW 158
             +   +      + +D + + G+G   T S +   D + +PV     +  +    + +W
Sbjct: 62  EIMEEGISYIVRESKIDPDNIVGIGIDFTSSTIIFTDENLNPVHNLKQFKNNPHAYVKLW 121

Query: 159 MDHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDL 214
             H A K+AEK+       N+  L + G  VS E   PK++ V     E        M+ 
Sbjct: 122 KHHGAYKEAEKLYQTAIENNNKWLGHYGYNVSSEWMIPKIMEVMNRAPEIMEKTAYIMEA 181

Query: 215 SDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 274
            DW+  + T  + RS C                    GF+      W++E      L D 
Sbjct: 182 GDWIVNKLTNKNIRSNCGL------------------GFKAF----WEEETGFHYDLFDK 219

Query: 275 IDGHHAK-IGRSVAFPGHPLGSG---LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES 330
           ID   +K I   V+ P   +G     L    A++LGL   T V   +IDAHA  +G+   
Sbjct: 220 IDPKLSKVIQDKVSAPVVNIGEAVGKLDDKMAQKLGLSKETMVSPFIIDAHASLLGI--- 276

Query: 331 VPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEG 390
                    E ++E     M +V GTSTCH+ ++  +  +PG+ G    A++P+ +  E 
Sbjct: 277 -------GSEKDKE-----MTMVMGTSTCHLMLNEKQHQVPGISGSVKGAIIPELFAYEA 324

Query: 391 GQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 450
           GQSA G L +Y+ +   A +S  + AA+R++++FEL+N   E + H+   P  + L    
Sbjct: 325 GQSAVGDLFEYVAKQ--APKSYVDEAANRNMTVFELMN---EKIKHQM--PGESGL---- 373

Query: 451 HVLPDFH-GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 509
            +  D+H GNRS ++D    G I G+TL +  +    +Y A ++  A+GT+ I++     
Sbjct: 374 -IALDWHNGNRSVLSDSNLTGCIFGLTLQTKHED---IYRAYLEATAFGTKMIMQQYQDW 429

Query: 510 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 568
             +++ + ACGG+  KN + +  +A+++   +I+     +  +GAAILGAV+   ++S+ 
Sbjct: 430 HMEVEKVFACGGIPKKNAVMMDIYANVLNKKLIVMDSEYAPAIGAAILGAVSGGAHNSIN 489

Query: 569 EAMKAM 574
           +A+ AM
Sbjct: 490 DAVDAM 495

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q6GBT5|ARAB_STAAS Ribulokinase OS=Staphylococcus aureus (strain MSSA476) GN=araB PE=3 SV=1

 Score =  165 bits (418), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 147/546 (26%), Positives = 255/546 (46%), Gaps = 78/546 (14%)

Query: 55  SVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQ---IWKEGDCIE-------QSSTDIW 103
           S  +G+D GT S R  L + + G+++     P     I  E + ++       Q+S D  
Sbjct: 2   SYSIGIDYGTASGRVFLINTTNGQVVSKFVKPYTHGVIESELNGLKIPHTYALQNSNDYL 61

Query: 104 HAICAAVDSACSLANVDGEEVKGVGFAATCSLV---DADGSPVS--VSWNGDSRRNIIVW 158
             +   +      + +D + + G+G   T S +   D + +PV     +  +    + +W
Sbjct: 62  EIMEEGISYIVRESKIDPDNIVGIGIDFTSSTIIFTDENLNPVHNLKQFKNNPHAYVKLW 121

Query: 159 MDHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDL 214
             H A K+AEK+       N+  L + G  VS E   PK++ V     E        M+ 
Sbjct: 122 KHHGAYKEAEKLYQTAIENNNKWLGHYGYNVSSEWMIPKIMEVMNRAPEIMEKTAYIMEA 181

Query: 215 SDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 274
            DW+  + T  + RS C                    GF+      W++E      L D 
Sbjct: 182 GDWIVNKLTNKNIRSNCGL------------------GFKAF----WEEETGFHYDLFDK 219

Query: 275 IDGHHAK-IGRSVAFPGHPLGSG---LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES 330
           ID   +K I   V+ P   +G     L    A++LGL   T V   +IDAHA  +G+   
Sbjct: 220 IDPKLSKVIQDKVSAPVVNIGEAVGKLDDKMAQKLGLSKETMVSPFIIDAHASLLGI--- 276

Query: 331 VPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEG 390
                    E ++E     M +V GTSTCH+ ++  +  +PG+ G    A++P+ +  E 
Sbjct: 277 -------GSEKDKE-----MTMVMGTSTCHLMLNEKQHQVPGISGSVKGAIIPELFAYEA 324

Query: 391 GQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 450
           GQSA G L +Y+ +   A +S  + AA+R++++FEL+N   E + H+   P  + L    
Sbjct: 325 GQSAVGDLFEYVAKQ--APKSYVDEAANRNMTVFELMN---EKIKHQM--PGESGL---- 373

Query: 451 HVLPDFH-GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 509
            +  D+H GNRS ++D    G I G+TL +  +    +Y A ++  A+GT+ I++     
Sbjct: 374 -IALDWHNGNRSVLSDSNLTGCIFGLTLQTKHED---IYRAYLEATAFGTKMIMQQYQDW 429

Query: 510 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 568
             +++ + ACGG+  KN + +  +A+++   +I+     +  +GAAILGAV+   ++S+ 
Sbjct: 430 HMEVEKVFACGGIPKKNAVMMDIYANVLNKKLIVMDSEYAPAIGAAILGAVSGGAHNSIN 489

Query: 569 EAMKAM 574
           +A+ AM
Sbjct: 490 DAVDAM 495

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q49V87|ARAB2_STAS1 Ribulokinase 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=araB2 PE=3 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 153/581 (26%), Positives = 270/581 (46%), Gaps = 102/581 (17%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIE--------------QSSTDI 102
           +G+D GTGS R  L + E+G+++G     +Q +  G  IE              Q++ D 
Sbjct: 5   IGIDFGTGSGRVFLVNTENGEIIGQY---VQTYAHG-TIEGELNGHKLPQSYALQNANDY 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCS---LVDADGSPV--SVSWNGDSRRNIIV 157
              I   +    +  N+D +++ G+G   T S    VD    P+  +  +  +    + +
Sbjct: 61  MEVIETGIPEILAKTNIDAKDIVGIGIDFTSSTVIFVDDQMEPMHNNPKFYNNPHAYVKL 120

Query: 158 WMDHRAVKQAE-----KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM 212
           W  H A  +A+      I  +N   L Y G  VS E   PK++ V +   E  +     M
Sbjct: 121 WKHHGAQAEADLLFNTAIEEKNR-WLGYYGFNVSSEWMIPKIMEVNDKAPEVMTETADIM 179

Query: 213 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDM--EACGWDDEFWEEI- 269
           +  DW+  R TG++ RS C                    GF+     + G+  + ++++ 
Sbjct: 180 EAGDWIVNRLTGENVRSNCGL------------------GFKSFWESSTGFHYDLFDKVD 221

Query: 270 -GLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM 328
             L D++     K+   +   G  +G+ ++   A +LGL P T V   +IDAH+  +G+ 
Sbjct: 222 DNLSDIV---RTKVEAPIVSIGESVGT-VSAEMAHKLGLSPETVVSPFIIDAHSSLLGI- 276

Query: 329 ESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLT 388
                      E ++E     M +V GTSTCH+ +++ +  +PG+ G    A++P  +  
Sbjct: 277 ---------GAEKDKE-----MTMVMGTSTCHLMLNKEQHKVPGISGSVKGAIIPDLYAY 322

Query: 389 EGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTE 448
           E GQ+A G L +Y+     +       A  R +S+FELLN    S  +   S  +A    
Sbjct: 323 EAGQTAVGDLFEYVANQ--SPYEYVKTAEDRGISIFELLNEK-ASQRYPGESGLIAL--- 376

Query: 449 DIHVLPDFH-GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 507
                 D+H GNRS ++D   KG + G++L +  + +   Y A ++  A+GT+ I++   
Sbjct: 377 ------DWHNGNRSVLSDSNLKGSLFGLSLQTKHEDI---YRAYMEATAFGTKMIMQQYQ 427

Query: 508 AHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAV---AAKR 563
               +++ + ACGG+  KN L ++ +A+++   I +     +  +GAAILGA+   A   
Sbjct: 428 GWQMEVERVFACGGIPKKNHLLMEIYANVLNKKITVIDSEYAPAIGAAILGAICGGAHPN 487

Query: 564 YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELF 604
           +SS I+AMK       V++     +V+  H A+ LI+++LF
Sbjct: 488 FSSAIQAMKE-----PVLY-----QVEPDH-AQVLIYKKLF 517

Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q2YSA9|ARAB_STAAB Ribulokinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=araB PE=3 SV=1

 Score =  164 bits (414), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/546 (26%), Positives = 254/546 (46%), Gaps = 78/546 (14%)

Query: 55  SVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQ---IWKEGDCIE-------QSSTDIW 103
           S  +G+D GT S R  L + + G+++     P     I  E + ++       Q+S D  
Sbjct: 2   SYSIGIDYGTASGRVFLINTTNGQVVSKFVKPYTHGVIESELNGLKIPHTYALQNSNDYL 61

Query: 104 HAICAAVDSACSLANVDGEEVKGVGFAATCSLV---DADGSPVS--VSWNGDSRRNIIVW 158
             +   +      + +D   + G+G   T S +   D + +PV     +  +    + +W
Sbjct: 62  EIMEEGISYIVRESKIDPVNIVGIGIDFTSSTIIFTDENINPVHNLKQFKNNPHAYVKLW 121

Query: 159 MDHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDL 214
             H A K+AEK+       N+  L + G  VS E   PK++ V     E        M+ 
Sbjct: 122 KHHGAYKEAEKLYQTAIENNNKWLGHYGYNVSSEWMIPKIMEVMNRAPEIMEKTAYIMEA 181

Query: 215 SDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 274
            DW+  + T  + RS C                    GF+      W++E      L D 
Sbjct: 182 GDWIVNKLTNKNVRSNCGL------------------GFKAF----WEEETGFHYDLFDK 219

Query: 275 IDGHHAK-IGRSVAFPGHPLGSG---LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES 330
           ID   +K I   V+ P   +G     L    A++LGL   T V   +IDAHA  +G+   
Sbjct: 220 IDPKLSKVIQDKVSAPVVNIGEAVGKLDDKMAQKLGLSKETMVSPFIIDAHASLLGI--- 276

Query: 331 VPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEG 390
                    E ++E     M +V GTSTCH+ ++  +  +PG+ G    A++P+ +  E 
Sbjct: 277 -------GSEKDKE-----MTMVLGTSTCHLMLNEKQHQVPGISGSVKGAIIPELFAYEA 324

Query: 391 GQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 450
           GQSA G L +Y+ +   A +S  + AA+R++++FEL+N   E + H+   P  + L    
Sbjct: 325 GQSAVGDLFEYVAKQ--APKSYVDEAANRNMTVFELMN---EKIKHQM--PGESGL---- 373

Query: 451 HVLPDFH-GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 509
            +  D+H GNRS ++D    G I G+TL +  +    +Y A ++  A+GT+ I++     
Sbjct: 374 -IALDWHNGNRSVLSDSNLTGCIFGLTLQTKHED---IYRAYLEATAFGTKMIMQQYQDW 429

Query: 510 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 568
             +++ + ACGG+  KN + +  +A+++   +I+     +  +GAAILGAV+   ++S+ 
Sbjct: 430 HMEVEKVFACGGIPKKNAVMMDIYANVLNKKLIVMDSEYAPAIGAAILGAVSGGAHNSIN 489

Query: 569 EAMKAM 574
           +A+ AM
Sbjct: 490 DAVDAM 495

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	619
225446130	581	PREDICTED: FGGY carbohydrate kinase doma	0.927	0.987	0.848	0.0
42567264	579	FGGY family of carbohydrate kinase [Arab	0.932	0.996	0.822	0.0
449462687	613	PREDICTED: FGGY carbohydrate kinase doma	0.982	0.991	0.771	0.0
297802998	580	hypothetical protein ARALYDRAFT_491720 [	0.932	0.994	0.820	0.0
51971499	579	unnamed protein product [Arabidopsis tha	0.932	0.996	0.818	0.0
7269931	569	putative protein [Arabidopsis thaliana]	0.915	0.996	0.811	0.0
449507931	613	PREDICTED: FGGY carbohydrate kinase doma	0.982	0.991	0.764	0.0
242074508	574	hypothetical protein SORBIDRAFT_06g03021	0.920	0.993	0.816	0.0
326534226	571	predicted protein [Hordeum vulgare subsp	0.909	0.985	0.815	0.0
357479747	576	FGGY carbohydrate kinase domain-containi	0.927	0.996	0.813	0.0

>gi|225446130|ref|XP_002275685.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein [Vitis vinifera] gi|297735351|emb|CBI17791.3| unnamed protein product [Vitis vinifera]

 Score = 1029 bits (2661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/576 (84%), Positives = 538/576 (93%), Gaps = 2/576 (0%)

Query: 46  ATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA 105
           A  P A  RSV LGVDVGTGSARAGLFDE GKLLGSASSPIQIWK+G+CIEQSSTDIWHA
Sbjct: 6   APEPAAPLRSVLLGVDVGTGSARAGLFDEDGKLLGSASSPIQIWKDGNCIEQSSTDIWHA 65

Query: 106 ICAAVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRA 163
           ICAAV +ACSLANV GEEV G+GFAATCSLV  DADGSPV+VS +GD+RRNIIVWMDHRA
Sbjct: 66  ICAAVKAACSLANVAGEEVAGLGFAATCSLVAVDADGSPVTVSLSGDTRRNIIVWMDHRA 125

Query: 164 VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 223
           VKQAEKINS +SPVLQYCGG++SPEMQPPKLLWVKENLQESW+M FRWMDLSDWL+YRAT
Sbjct: 126 VKQAEKINSSSSPVLQYCGGSLSPEMQPPKLLWVKENLQESWTMAFRWMDLSDWLAYRAT 185

Query: 224 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 283
           GDDTRSLCTTVCKWTYLGHAHM+Q+NEK  R+MEACGWDD+FWEEIGLGDLIDGHHAKIG
Sbjct: 186 GDDTRSLCTTVCKWTYLGHAHMEQINEKDSRNMEACGWDDDFWEEIGLGDLIDGHHAKIG 245

Query: 284 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEE 343
           RSVAFPGHPLGSGLTP AAKE+GL  GTPVGTSLIDAHAGGVGVMESV    SE+KE E+
Sbjct: 246 RSVAFPGHPLGSGLTPDAAKEMGLRAGTPVGTSLIDAHAGGVGVMESVAVPDSESKEYEK 305

Query: 344 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYII 403
            AICHR+VLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLDYII
Sbjct: 306 GAICHRLVLVCGTSTCHMAVSRRKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDYII 365

Query: 404 ENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI 463
           ENHVAS  LANRAAS+++S+FELLN  LESM+ +  SPF+AALTEDIHVLPDFHGNRSPI
Sbjct: 366 ENHVASPRLANRAASQNISVFELLNKILESMMQDLKSPFLAALTEDIHVLPDFHGNRSPI 425

Query: 464 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA 523
           ADPK+KG++CG+TLD+SEKQLALLYLATVQ IAYGTRHIV+HCNAHGH+IDTLLACGGLA
Sbjct: 426 ADPKAKGVVCGLTLDTSEKQLALLYLATVQSIAYGTRHIVDHCNAHGHQIDTLLACGGLA 485

Query: 524 KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 583
           KNPLFLQ+HADI+GCPI+LPRE+ESVLLGAAILGAVA+K+YSSL ++MKA+NAAGQVIHP
Sbjct: 486 KNPLFLQEHADIVGCPIVLPRESESVLLGAAILGAVASKKYSSLSDSMKALNAAGQVIHP 545

Query: 584 SKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 619
           ++DPKVKKYHDAKY IFREL+EQQ+S RSIMAQALA
Sbjct: 546 AEDPKVKKYHDAKYQIFRELYEQQLSHRSIMAQALA 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567264|ref|NP_194760.2| FGGY family of carbohydrate kinase [Arabidopsis thaliana] gi|332660351|gb|AEE85751.1| FGGY family of carbohydrate kinase [Arabidopsis thaliana]

 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/579 (82%), Positives = 528/579 (91%), Gaps = 2/579 (0%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRSVFLGVDVGTGSARAGLFD++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct: 1   MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMD 160
           WHA+CAAV SACSLANV   EVKG+GFAATCSLV  DA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 161 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 220
           HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 221 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280
           RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 340
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES  ES S  KE
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKE 300

Query: 341 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 400
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 360

Query: 401 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 460
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 361 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query: 461 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 520
           SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct: 421 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 480

Query: 521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 580
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQV
Sbjct: 481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query: 581 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 619
           +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 541 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 579

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462687|ref|XP_004149072.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein-like [Cucumis sativus]

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/617 (77%), Positives = 548/617 (88%), Gaps = 9/617 (1%)

Query: 5   KRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGT 64
           KR +W++T PLL Q+HR    P     R+  +  G+     +  PP   R VFLGVDVGT
Sbjct: 4   KRNSWSETAPLLGQQHRFQSLPA----RLPSSNIGMASPTDSVPPP---RPVFLGVDVGT 56

Query: 65  GSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV 124
           GSARAG+FDE+GKLLGS+SSPIQIWK+G+CIEQSSTDIWHA+CAAV SACS ANV GEEV
Sbjct: 57  GSARAGIFDETGKLLGSSSSPIQIWKDGNCIEQSSTDIWHAVCAAVKSACSKANVSGEEV 116

Query: 125 KGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCG 182
           KG+GF ATCSLV  DADGSPV+VSW+GDSRRN+IVWMDHRAV+QAE+INS NSPVLQYCG
Sbjct: 117 KGLGFTATCSLVAVDADGSPVTVSWSGDSRRNVIVWMDHRAVEQAERINSFNSPVLQYCG 176

Query: 183 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 242
           G++SPEMQPPKLLWVKENL ++WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH
Sbjct: 177 GSLSPEMQPPKLLWVKENLPDTWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 236

Query: 243 AHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAA 302
           AHM Q NEK  R+MEACGWDD+FWEEIGL DLIDGHHAKIGRSVAFPGHPLGSGLTP AA
Sbjct: 237 AHMSQYNEKDSRNMEACGWDDDFWEEIGLRDLIDGHHAKIGRSVAFPGHPLGSGLTPVAA 296

Query: 303 KELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMA 362
           KELGLV G PVG SLIDAHAGGVGV+ESVP   S+++   +E I +RM LVCGTSTCHMA
Sbjct: 297 KELGLVAGIPVGVSLIDAHAGGVGVLESVPVQDSDSEGFNKEMILNRMALVCGTSTCHMA 356

Query: 363 VSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS 422
           VSR+KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD+II+NHVAS  LANRAAS+ +S
Sbjct: 357 VSRDKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIQNHVASPHLANRAASQKIS 416

Query: 423 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEK 482
           +F++LN  LE+++ +  SPF+AALTEDIH+LPDFHGNRSPI+DPK+KG+I G+TLD+SE+
Sbjct: 417 VFDILNKLLENLVVDLKSPFLAALTEDIHILPDFHGNRSPISDPKAKGVIYGLTLDTSEQ 476

Query: 483 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL 542
           QL++LYLATVQ IAYGTRHIVEHCN+HGHKI+TLLACGGLAKN LF+Q+HADIIGCPIIL
Sbjct: 477 QLSILYLATVQAIAYGTRHIVEHCNSHGHKINTLLACGGLAKNSLFIQEHADIIGCPIIL 536

Query: 543 PRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 602
           PRE+ESVLLGAAILGAVAA++YS+L +AMKA+N+AGQVI+PS DPKVK YHDAKY IFRE
Sbjct: 537 PRESESVLLGAAILGAVAARKYSTLQDAMKALNSAGQVIYPSTDPKVKLYHDAKYQIFRE 596

Query: 603 LFEQQVSQRSIMAQALA 619
           L+EQQ+S RSIMA+AL+
Sbjct: 597 LYEQQLSHRSIMARALS 613

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802998|ref|XP_002869383.1| hypothetical protein ARALYDRAFT_491720 [Arabidopsis lyrata subsp. lyrata] gi|297315219|gb|EFH45642.1| hypothetical protein ARALYDRAFT_491720 [Arabidopsis lyrata subsp. lyrata]

 Score = 1000 bits (2586), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/580 (82%), Positives = 527/580 (90%), Gaps = 3/580 (0%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRS FLGVDVGTGSARAGLFDE+GKLLGSASSPIQIWK+GDC+EQSSTDI
Sbjct: 1   MTTAELNPFPSRSFFLGVDVGTGSARAGLFDENGKLLGSASSPIQIWKDGDCVEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMD 160
           WHA+CAAV SACSLANV   EVKG+GFAATCSLV  DA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSEVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 161 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 220
           HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 221 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280
           RATGDDTRSLCTTVCKWTYLGHAHM QM+EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMSEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 340
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES  +S S  KE
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKSDSDSLTKE 300

Query: 341 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 400
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWS MVP++WLTEGGQSATGALLD
Sbjct: 301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSGMVPEYWLTEGGQSATGALLD 360

Query: 401 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 460
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 361 HIIENHVASPRLANRAASQKVSVFELLNNLLKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query: 461 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 520
           SP+ADP SKG+I GM+LDSSEKQLALLYLAT+QGIAYGTRHIVEHCNAHGHKIDTLLACG
Sbjct: 421 SPVADPNSKGVIFGMSLDSSEKQLALLYLATIQGIAYGTRHIVEHCNAHGHKIDTLLACG 480

Query: 521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQ- 579
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQ 
Sbjct: 481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query: 580 VIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 619
           V+HPS DPKV KYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 541 VVHPSSDPKVTKYHDAKYRIFRNLYEQQLSHRSIIAEALA 580

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971499|dbj|BAD44414.1| unnamed protein product [Arabidopsis thaliana]

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/579 (81%), Positives = 526/579 (90%), Gaps = 2/579 (0%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRSVFLGVDVGTGSARAGL D++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct: 1   MTTAELNPFPSRSVFLGVDVGTGSARAGLSDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMD 160
           WHA+CAAV SACSLANV   EVKG+GFAATCSLV  DA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 161 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 220
           H AVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HGAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 221 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280
           RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 340
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES  ES S  KE
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKE 300

Query: 341 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 400
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 360

Query: 401 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 460
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 361 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query: 461 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 520
           SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct: 421 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 480

Query: 521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 580
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQV
Sbjct: 481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query: 581 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 619
           +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 541 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 579

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7269931|emb|CAB81024.1| putative protein [Arabidopsis thaliana]

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/579 (81%), Positives = 523/579 (90%), Gaps = 12/579 (2%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           M  A   P  SRSVFLGVDVGTGSARAGLFD++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct: 1   MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMD 160
           WHA+CAAV SACSLANV   EVKG+GFAATCSLV  DA+GSPV+VSW+GDSRRNIIVWMD
Sbjct: 61  WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query: 161 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 220
           HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct: 121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query: 221 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280
           RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct: 181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query: 281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 340
           KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVME          +
Sbjct: 241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVME----------K 290

Query: 341 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 400
           ++ + +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 291 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 350

Query: 401 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 460
           +IIENHVAS  LANRAAS+ VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct: 351 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 410

Query: 461 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 520
           SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct: 411 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 470

Query: 521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 580
           GL+KNPLF+Q+HADI+GCPIILPRE+ESVLLGAAILGAVA K Y SL +AMKA+NAAGQV
Sbjct: 471 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 530

Query: 581 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 619
           +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct: 531 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507931|ref|XP_004163170.1| PREDICTED: FGGY carbohydrate kinase domain-containing protein-like [Cucumis sativus]

 Score =  991 bits (2563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/617 (76%), Positives = 545/617 (88%), Gaps = 9/617 (1%)

Query: 5   KRRAWADTTPLLDQKHRSSISPIYNTNRISYAAGGLLEMAYATAPPARSRSVFLGVDVGT 64
           KR +W++T PLL Q+HR    P     R+  +  G+     +  PP   R VFLGVDVGT
Sbjct: 4   KRNSWSETAPLLGQQHRFQSLPA----RLPSSNIGMASPTDSVPPP---RPVFLGVDVGT 56

Query: 65  GSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV 124
           GSARAG+FDE+GKLLGS+SSPIQIWK+G+CIEQSSTDIWHA+CAAV SACS ANV GEEV
Sbjct: 57  GSARAGIFDETGKLLGSSSSPIQIWKDGNCIEQSSTDIWHAVCAAVKSACSKANVSGEEV 116

Query: 125 KGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCG 182
           KG+GF ATCSLV  DADGSPV+VSW+GDSRRN+IVWMDHRAV+QAE+INS NSPVLQYCG
Sbjct: 117 KGLGFTATCSLVAVDADGSPVTVSWSGDSRRNVIVWMDHRAVEQAERINSFNSPVLQYCG 176

Query: 183 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 242
           G++SPEMQPPKLLWVKENL ++WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH
Sbjct: 177 GSLSPEMQPPKLLWVKENLPDTWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGH 236

Query: 243 AHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAA 302
           AHM Q NEK  R+MEACGWDD+FWEEIGL DLIDGHHAKIGRSVAFPGHPLGSGLTP AA
Sbjct: 237 AHMSQYNEKDSRNMEACGWDDDFWEEIGLRDLIDGHHAKIGRSVAFPGHPLGSGLTPVAA 296

Query: 303 KELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMA 362
           K   +V G PVG SLIDAHAGGVGV+ESVP   S+++   +E I +RM LVCGTSTCHMA
Sbjct: 297 KVRNIVAGIPVGVSLIDAHAGGVGVLESVPVQDSDSEGFNKEMILNRMALVCGTSTCHMA 356

Query: 363 VSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS 422
           VSR+KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD+II+NHVAS  LANRAAS+ +S
Sbjct: 357 VSRDKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLDHIIQNHVASPHLANRAASQKIS 416

Query: 423 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEK 482
           +F++LN  LE+++ +  SPF+AALTEDIH+LPDFHGNRSPI+DPK+KG+I G+TLD+SE+
Sbjct: 417 VFDILNKLLENLVVDLKSPFLAALTEDIHILPDFHGNRSPISDPKAKGVIYGLTLDTSEQ 476

Query: 483 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL 542
           QL++LYLATVQ IAYGTRHIVEHCN+HGHKI+TLLACGGLAKN LF+Q+HADIIGCPIIL
Sbjct: 477 QLSILYLATVQAIAYGTRHIVEHCNSHGHKINTLLACGGLAKNSLFIQEHADIIGCPIIL 536

Query: 543 PRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 602
           PRE+ESVLLGAAILGAVAA++YS+L +AMKA+N+AGQVI+PS DPKVK YHDAKY IFRE
Sbjct: 537 PRESESVLLGAAILGAVAARKYSTLQDAMKALNSAGQVIYPSTDPKVKLYHDAKYQIFRE 596

Query: 603 LFEQQVSQRSIMAQALA 619
           L+EQQ+S RSIMA+AL+
Sbjct: 597 LYEQQLSHRSIMARALS 613

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242074508|ref|XP_002447190.1| hypothetical protein SORBIDRAFT_06g030210 [Sorghum bicolor] gi|241938373|gb|EES11518.1| hypothetical protein SORBIDRAFT_06g030210 [Sorghum bicolor]

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/572 (81%), Positives = 520/572 (90%), Gaps = 2/572 (0%)

Query: 49  PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICA 108
           P   + SVFLGVDVGTGSARAGLFDE GKLLGSASSPIQIWKE DCIEQSSTDIWHA+CA
Sbjct: 2   PRGSAASVFLGVDVGTGSARAGLFDEKGKLLGSASSPIQIWKEKDCIEQSSTDIWHAVCA 61

Query: 109 AVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 166
           AV SACSLANV  E+V G+GFAATCSLV  DADGSPVSVS +GD+RRNIIVWMDHRAV Q
Sbjct: 62  AVKSACSLANVAPEDVAGLGFAATCSLVAVDADGSPVSVSLSGDTRRNIIVWMDHRAVNQ 121

Query: 167 AEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD 226
           AE+IN+ NSPVLQYCGG VSPEMQ PKLLW+KENLQESWSMV RWMDLSDWL+YRATGDD
Sbjct: 122 AERINATNSPVLQYCGGGVSPEMQAPKLLWMKENLQESWSMVCRWMDLSDWLAYRATGDD 181

Query: 227 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 286
           TRSLCTTVCKWTYLGHAHM+Q  E   RDMEACGWD+ FWEEIGLGDL++G+ AKIGRSV
Sbjct: 182 TRSLCTTVCKWTYLGHAHMEQWKESDSRDMEACGWDNVFWEEIGLGDLVEGNCAKIGRSV 241

Query: 287 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAI 346
           AFPGHPLGSGLTP AAKELGL+PGTPVGTSLIDAHAGGVGVMESV ++ S+A  ++E+AI
Sbjct: 242 AFPGHPLGSGLTPTAAKELGLLPGTPVGTSLIDAHAGGVGVMESVSDAGSKAGLSDEDAI 301

Query: 347 CHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH 406
           CHRMVLVCGTSTCHMAVS+N+LFIPGVWGPFWSAMVP+FWLTEGGQSATGALLDYIIENH
Sbjct: 302 CHRMVLVCGTSTCHMAVSKNRLFIPGVWGPFWSAMVPEFWLTEGGQSATGALLDYIIENH 361

Query: 407 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 466
           VAS  L+N AAS+ +S+FELLN  L SM HE+NSPF++ALT+D HVLPDFHGNRSP+ADP
Sbjct: 362 VASPLLSNHAASQSISIFELLNKMLLSMSHEQNSPFLSALTQDTHVLPDFHGNRSPVADP 421

Query: 467 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP 526
           KSKG+I G+TLD+SEK LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 
Sbjct: 422 KSKGVIYGLTLDTSEKHLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNS 481

Query: 527 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKD 586
           +++Q+HADI GCPIILPRENESVLLGAA+LGAVA K++  + +AMKA+NAAG+V++PS D
Sbjct: 482 VYIQEHADITGCPIILPRENESVLLGAAVLGAVAGKKFLGVRDAMKALNAAGKVVNPSSD 541

Query: 587 PKVKKYHDAKYLIFRELFEQQVSQRSIMAQAL 618
           P+VKKYHDAKY IFR L+EQQ+S RS MAQAL
Sbjct: 542 PRVKKYHDAKYQIFRSLYEQQLSHRSTMAQAL 573

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326534226|dbj|BAJ89463.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/565 (81%), Positives = 515/565 (91%), Gaps = 2/565 (0%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           VFLGVDVGTGSARAG+FDE GKLLGSASSPIQIWKE DCIEQSSTDIW A+C AV SACS
Sbjct: 6   VFLGVDVGTGSARAGVFDEKGKLLGSASSPIQIWKEKDCIEQSSTDIWLAVCTAVKSACS 65

Query: 116 LANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
           LANV  E+V G+GFAATCSLV  DADGSPVSVSW+ D+RRNIIVWMDHRAV QA++IN+R
Sbjct: 66  LANVAAEDVAGLGFAATCSLVAVDADGSPVSVSWSADARRNIIVWMDHRAVDQADRINAR 125

Query: 174 NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 233
           NSPVLQYCGG VSPEMQ PKLLWVKENLQESWSMV RWMDLSDWL+YRATGDDTRSLCTT
Sbjct: 126 NSPVLQYCGGGVSPEMQAPKLLWVKENLQESWSMVCRWMDLSDWLAYRATGDDTRSLCTT 185

Query: 234 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPL 293
           VCKWTYLGHAHM Q  E    DM+ACGWDD FWEEIGLGDL++G+ AKIGRSVAFPGHPL
Sbjct: 186 VCKWTYLGHAHMDQWKESDSCDMQACGWDDVFWEEIGLGDLVEGNRAKIGRSVAFPGHPL 245

Query: 294 GSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLV 353
           GSGLTP +AKELGL+PGTPVGTSLIDAHAGGVGVMESVPE+ S+   ++EEAIC RMVLV
Sbjct: 246 GSGLTPTSAKELGLLPGTPVGTSLIDAHAGGVGVMESVPEAESKDDLSDEEAICRRMVLV 305

Query: 354 CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLA 413
           CGTSTCHMAVS+NKLFIPGVWGPFWSAM+P++WLTEGGQSATGALLDYI+ENH A+  LA
Sbjct: 306 CGTSTCHMAVSKNKLFIPGVWGPFWSAMIPEYWLTEGGQSATGALLDYIVENHAAAPLLA 365

Query: 414 NRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 473
           N AAS+ VS+FELLN  L SM HE+N PF++AL++D+HVLPDFHGNRSP+ADPKSKG+IC
Sbjct: 366 NHAASQSVSIFELLNKILLSMSHEQNIPFLSALSQDMHVLPDFHGNRSPVADPKSKGVIC 425

Query: 474 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA 533
           G+TLD+SEK LALLYLAT+Q IAYGTRHIVEHCNAHGHKIDTLLACGGLAKN L++Q+HA
Sbjct: 426 GLTLDTSEKHLALLYLATIQSIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNSLYIQEHA 485

Query: 534 DIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYH 593
           DIIGCPIILPRENESVLLGA++LGAVAAK++S + +AMK+MNAAG+V+HPS DP+VKKYH
Sbjct: 486 DIIGCPIILPRENESVLLGASVLGAVAAKKFSGIHDAMKSMNAAGKVVHPSSDPRVKKYH 545

Query: 594 DAKYLIFRELFEQQVSQRSIMAQAL 618
           DAKY IFR L+EQQ+S RSIM QAL
Sbjct: 546 DAKYQIFRSLYEQQLSHRSIMMQAL 570

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479747|ref|XP_003610159.1| FGGY carbohydrate kinase domain-containing protein [Medicago truncatula] gi|355511214|gb|AES92356.1| FGGY carbohydrate kinase domain-containing protein [Medicago truncatula]

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/579 (81%), Positives = 526/579 (90%), Gaps = 5/579 (0%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           MA  T P A SRSVFLGVDVGTGSARAGLFDE GKLLGS+SSPIQIWK+G  +EQSSTDI
Sbjct: 1   MASPTEPSA-SRSVFLGVDVGTGSARAGLFDEEGKLLGSSSSPIQIWKDGAFVEQSSTDI 59

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMD 160
           W A+C AV +ACS A V   EVK +GFAATCSLV  D+D SPVSVS +GDSRRN+IVWMD
Sbjct: 60  WLAVCVAVKAACSKAKVAAAEVKSLGFAATCSLVAVDSDSSPVSVSRSGDSRRNVIVWMD 119

Query: 161 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 220
           HRAV QAE+IN+  SP L+YCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY
Sbjct: 120 HRAVDQAERINTSKSPALEYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 179

Query: 221 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280
           RATGDDTRSLCTTVCKWTYLGHAHMQ +N+   RDMEACGWDDEFWEEIGLGDL++GHHA
Sbjct: 180 RATGDDTRSLCTTVCKWTYLGHAHMQYVNDTDSRDMEACGWDDEFWEEIGLGDLVEGHHA 239

Query: 281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 340
           KIGRSVAFPGHPLGSGLTP AAKELGL+PG PVGTSLIDAHAGGVGV+ESVP S  E +E
Sbjct: 240 KIGRSVAFPGHPLGSGLTPTAAKELGLLPGIPVGTSLIDAHAGGVGVIESVPPS--ETEE 297

Query: 341 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 400
           N++EAIC+RMVLVCGTSTCHMAVSR+KLFIPG+WGPFWSAMVP++WLTEGGQSATGALLD
Sbjct: 298 NDKEAICNRMVLVCGTSTCHMAVSRSKLFIPGIWGPFWSAMVPEYWLTEGGQSATGALLD 357

Query: 401 YIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 460
           +IIENH +S  LANRAAS+ +S+FELLN  LE+++ E+N  F+ ALTE +HVLPDFHGNR
Sbjct: 358 HIIENHASSIHLANRAASQKISVFELLNKLLETIMTEQNQSFIGALTEYLHVLPDFHGNR 417

Query: 461 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 520
           SPIADPKSKG+I G+TLD+S++QLALLYLATVQGIAYGTRHIVEHCNAHGHKI+TLLACG
Sbjct: 418 SPIADPKSKGVIYGLTLDTSDQQLALLYLATVQGIAYGTRHIVEHCNAHGHKINTLLACG 477

Query: 521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQV 580
           GL+KNP+++Q+HADIIGCPIILPRE+ESVLLGAAILGAVA K+Y+SL EAMKA+NAAGQV
Sbjct: 478 GLSKNPIYIQEHADIIGCPIILPRESESVLLGAAILGAVATKKYNSLREAMKALNAAGQV 537

Query: 581 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 619
           IHPS DPKVKKYHDAKY IFR L+EQQ+S RS+MAQALA
Sbjct: 538 IHPSNDPKVKKYHDAKYKIFRGLYEQQLSNRSVMAQALA 576

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	619
TAIR|locus:2118761	579	AT4G30310 [Arabidopsis thalian	0.932	0.996	0.777	1.2e-253
CGD|CAL0004219	742	orf19.2737 [Candida albicans (	0.781	0.652	0.390	1.3e-94
UNIPROTKB|Q5AF71	742	CaO19.10251 "Potential carbohy	0.781	0.652	0.390	1.3e-94
ASPGD|ASPL0000044320	603	AN1568 [Emericella nidulans (t	0.885	0.908	0.362	2.1e-91
UNIPROTKB|G4N676	592	MGG_08591 "Uncharacterized pro	0.898	0.939	0.346	3.6e-89
SGD|S000002516	715	YDR109C "Putative kinase" [Sac	0.786	0.681	0.372	2.1e-88
UNIPROTKB|E1BNF8	550	FGGY "Uncharacterized protein"	0.562	0.632	0.461	2.4e-83
MGI|MGI:1922828	552	Fggy "FGGY carbohydrate kinase	0.562	0.630	0.464	6.4e-83
UNIPROTKB|Q96C11	551	FGGY "FGGY carbohydrate kinase	0.562	0.631	0.459	7.4e-82
UNIPROTKB|F1LSP9	552	Fggy "Protein Fggy" [Rattus no	0.562	0.630	0.459	1.5e-81

TAIR|locus:2118761 AT4G30310 [Arabidopsis thaliana (taxid:3702)]

 Score = 2442 (864.7 bits), Expect = 1.2e-253, P = 1.2e-253
 Identities = 450/579 (77%), Positives = 498/579 (86%)

Query:    43 MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
             M  A   P  SRSVFLGVDVGTGSARAGLFD++GKLLGSA+SPIQIWK+GDCIEQSSTDI
Sbjct:     1 MTTAELNPFPSRSVFLGVDVGTGSARAGLFDDNGKLLGSATSPIQIWKDGDCIEQSSTDI 60

Query:   103 WHAICAAVDSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMD 160
             WHA+CAAV SACSLANV   EVKG+GFAATCSLV  DA+GSPV+VSW+GDSRRNIIVWMD
Sbjct:    61 WHAVCAAVKSACSLANVSDVEVKGIGFAATCSLVAVDAEGSPVTVSWSGDSRRNIIVWMD 120

Query:   161 HRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 220
             HRAVKQAE+INS NSPVLQYCGG VSPEM+PPKLLWVKENL+ESWSMV++WMDLSDWLSY
Sbjct:   121 HRAVKQAERINSFNSPVLQYCGGGVSPEMEPPKLLWVKENLKESWSMVYKWMDLSDWLSY 180

Query:   221 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280
             RATGDDTRSLCTTVCKWTYLGHAHM QM EK  RDMEACGWDDEFWEEIGLGDL+DGHHA
Sbjct:   181 RATGDDTRSLCTTVCKWTYLGHAHMHQMTEKASRDMEACGWDDEFWEEIGLGDLVDGHHA 240

Query:   281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXX 340
             KIGRSVAFPGHPLG+GLT  AAKELGL+ GTPVGTSLIDAHAGGVGVMES          
Sbjct:   241 KIGRSVAFPGHPLGNGLTATAAKELGLLAGTPVGTSLIDAHAGGVGVMESKLESDSLTKE 300

Query:   341 XXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLD 400
                  +C RMVLVCGTSTCHMAVSR KLFIPGVWGPFWSAMVP++WLTEGGQSATGALLD
Sbjct:   301 SDVDTLCSRMVLVCGTSTCHMAVSREKLFIPGVWGPFWSAMVPEYWLTEGGQSATGALLD 360

Query:   401 YIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR 460
             +IIENHV             VS+FELLN  L++M  + +SPF++ALT D+H+LPDFHGNR
Sbjct:   361 HIIENHVASPRLANRAASQKVSVFELLNNILKTMAEDTSSPFISALTSDMHILPDFHGNR 420

Query:   461 SPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG 520
             SP+ADP SKG+I GM+LD+SEKQLALLYLAT+QGIAYGTRHIVEHCN HGHKIDTLLACG
Sbjct:   421 SPVADPNSKGVIFGMSLDTSEKQLALLYLATIQGIAYGTRHIVEHCNTHGHKIDTLLACG 480

Query:   521 GLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSLIEAMKAMNAAGQV 580
             GL+KNPLF+Q+HADI+GCPIILPRE+ES             K Y SL +AMKA+NAAGQV
Sbjct:   481 GLSKNPLFIQEHADIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQV 540

Query:   581 IHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQALA 619
             +HPS DPK+KKYHDAKY IFR L+EQQ+S RSI+A+ALA
Sbjct:   541 VHPSSDPKIKKYHDAKYRIFRNLYEQQLSHRSIIAEALA 579

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0019200 "carbohydrate kinase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

CGD|CAL0004219 orf19.2737 [Candida albicans (taxid:5476)]

 Score = 899 (321.5 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
 Identities = 200/512 (39%), Positives = 289/512 (56%)

Query:    49 PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAIC 107
             PPA     ++GVDVGTGSARA L D +G +LG A  PI+  + E + I Q+ST+IW AIC
Sbjct:    23 PPAEPDVYYIGVDVGTGSARACLIDTNGIILGLAERPIKRQELEANYITQNSTEIWEAIC 82

Query:   108 AAVDSACSLANVDGEEVKGVGFAATCSLV---DADGSPVSVSWN-GDSRRNIIVWMDHRA 163
               V S    + V  E+V G+GF ATCSLV   ++   PVSV  N  + + NII+WMDHRA
Sbjct:    83 YCVRSCLRDSGVQPEDVFGIGFDATCSLVAISESTDQPVSVGPNFKNDKDNIILWMDHRA 142

Query:   164 VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 223
             V +   IN+ N   L+Y GG +S EM+ PK+ W+K + +       ++ DL D+L ++AT
Sbjct:   143 VDETNAINATNDKCLKYVGGQMSIEMELPKMKWLKHH-KPGGIKDCKFYDLPDYLVHKAT 201

Query:   224 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 283
             G +TRS C+ VCK  ++           G  D E  GW +EF   I + +L++ +  ++G
Sbjct:   202 GTETRSYCSVVCKQGFV---------PIGVEDSET-GWSEEFLSSIDMPELVEDNFRRLG 251

Query:   284 ----RSVAF--PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES---VPXX 334
                 ++  +   G P+G+ LTP AA++LGL     VG+ +IDA+AG VG + +   VP  
Sbjct:   252 GIPGKNGKYLTAGDPVGN-LTPEAAEDLGLTTECVVGSPVIDAYAGWVGTVAAKADVPAL 310

Query:   335 XXXXXXXXXX--XICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 392
                           C R+  V GTSTCH+A+++   F+ GVWGP+ + M   +WL EGGQ
Sbjct:   311 QDEDAHSDGSIGTACGRLAAVAGTSTCHLAMTKEPCFVQGVWGPYKNVMAEGYWLAEGGQ 370

Query:   393 SATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 452
             S TG LL +++  H             ++S FE LN  LE ++ + N     +L   +  
Sbjct:   371 SITGQLLAHVLATHPANHALIRNAEQSNISKFEYLNSLLEDLVKDNNERSPVSLARHMFF 430

Query:   453 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 512
               DFHGNRSPIADP+ +G I G ++D+S   LA+ Y    + IA  TR I+E     GHK
Sbjct:   431 YGDFHGNRSPIADPRMRGSIIGQSMDNSLHDLAIQYFGACEFIAQQTRQIIEEMEKSGHK 490

Query:   513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPR 544
             I  +   GG ++N L ++  AD  G P+I+PR
Sbjct:   491 ISCIFMSGGQSRNGLLMRLLADCTGLPVIIPR 522

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5AF71 CaO19.10251 "Potential carbohydrate kinase" [Candida albicans SC5314 (taxid:237561)]

 Score = 899 (321.5 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
 Identities = 200/512 (39%), Positives = 289/512 (56%)

Query:    49 PPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAIC 107
             PPA     ++GVDVGTGSARA L D +G +LG A  PI+  + E + I Q+ST+IW AIC
Sbjct:    23 PPAEPDVYYIGVDVGTGSARACLIDTNGIILGLAERPIKRQELEANYITQNSTEIWEAIC 82

Query:   108 AAVDSACSLANVDGEEVKGVGFAATCSLV---DADGSPVSVSWN-GDSRRNIIVWMDHRA 163
               V S    + V  E+V G+GF ATCSLV   ++   PVSV  N  + + NII+WMDHRA
Sbjct:    83 YCVRSCLRDSGVQPEDVFGIGFDATCSLVAISESTDQPVSVGPNFKNDKDNIILWMDHRA 142

Query:   164 VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 223
             V +   IN+ N   L+Y GG +S EM+ PK+ W+K + +       ++ DL D+L ++AT
Sbjct:   143 VDETNAINATNDKCLKYVGGQMSIEMELPKMKWLKHH-KPGGIKDCKFYDLPDYLVHKAT 201

Query:   224 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 283
             G +TRS C+ VCK  ++           G  D E  GW +EF   I + +L++ +  ++G
Sbjct:   202 GTETRSYCSVVCKQGFV---------PIGVEDSET-GWSEEFLSSIDMPELVEDNFRRLG 251

Query:   284 ----RSVAF--PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES---VPXX 334
                 ++  +   G P+G+ LTP AA++LGL     VG+ +IDA+AG VG + +   VP  
Sbjct:   252 GIPGKNGKYLTAGDPVGN-LTPEAAEDLGLTTECVVGSPVIDAYAGWVGTVAAKADVPAL 310

Query:   335 XXXXXXXXXX--XICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 392
                           C R+  V GTSTCH+A+++   F+ GVWGP+ + M   +WL EGGQ
Sbjct:   311 QDEDAHSDGSIGTACGRLAAVAGTSTCHLAMTKEPCFVQGVWGPYKNVMAEGYWLAEGGQ 370

Query:   393 SATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 452
             S TG LL +++  H             ++S FE LN  LE ++ + N     +L   +  
Sbjct:   371 SITGQLLAHVLATHPANHALIRNAEQSNISKFEYLNSLLEDLVKDNNERSPVSLARHMFF 430

Query:   453 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 512
               DFHGNRSPIADP+ +G I G ++D+S   LA+ Y    + IA  TR I+E     GHK
Sbjct:   431 YGDFHGNRSPIADPRMRGSIIGQSMDNSLHDLAIQYFGACEFIAQQTRQIIEEMEKSGHK 490

Query:   513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPR 544
             I  +   GG ++N L ++  AD  G P+I+PR
Sbjct:   491 ISCIFMSGGQSRNGLLMRLLADCTGLPVIIPR 522

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000044320 AN1568 [Emericella nidulans (taxid:162425)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 209/577 (36%), Positives = 303/577 (52%)

Query:    57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
             ++G+DVGTGSARA + D +G ++G AS  I +W+ E    EQS+ +IW  ICA+V  A +
Sbjct:    28 YIGIDVGTGSARACIIDHNGDIVGLASKDIGLWQPEQQHYEQSTLNIWQCICASVQQALA 87

Query:   116 LANVDGEEVKGVGFAATCSLV---DADGSPVSVSWNG--DSRRNIIVWMDHRAVKQAEKI 170
                +   +V G+GF ATCSL         PVSV+  G   + RN+I+W+DHRAVK+ E I
Sbjct:    88 ERAIPSSQVHGIGFDATCSLAVFSKTTNKPVSVTRQGGFSTERNVILWLDHRAVKETELI 147

Query:   171 NSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSL 230
             N+    VL+Y GG +SPEM+ PK+LW+K  +        ++ DL D L++ ATG++TRS 
Sbjct:   148 NATGHKVLKYVGGTMSPEMEMPKILWLKNQMPPEVFADCKFYDLVDALTHIATGEETRSY 207

Query:   231 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG 290
             C+ VCK  YL      Q+  +G       GW  +F E IGLG+L     A+IG      G
Sbjct:   208 CSLVCKQGYLP----SQV--EG----STTGWQGDFLESIGLGELAADGFARIGGVNGETG 257

Query:   291 HPLGSG-----LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXX 345
               L +G     L+  AAKELGL PG  VG  +IDA+AG +G + +               
Sbjct:   258 QHLSAGERAGRLSARAAKELGLPPGIAVGAGVIDAYAGWIGTVGTKIDGVDVVGNHNRAD 317

Query:   346 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 405
               +R+  V GTSTCH+A+S N +F+PGVWGP+   +    W+ EGGQSATG LL ++++ 
Sbjct:   318 AFNRLAAVAGTSTCHIAMSSNPVFVPGVWGPYRDTVFRGCWMAEGGQSATGQLLKHVLDT 377

Query:   406 HVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 465
             H              + +F  L+G L ++  ++N P +AAL        DF GNRSP+AD
Sbjct:   378 HPASKSAFAVAADRGLDIFSFLDGHLAALAAKQNLPCIAALARHFFFYGDFFGNRSPLAD 437

Query:   466 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 525
             P   G + G+T D+S   LA+ Y  T++ IA  TR IVE  N  GH I ++   G   KN
Sbjct:   438 PNMTGSVVGLTADTSIDSLAIHYYGTLEFIALQTRQIVETMNKAGHAITSIFMSGSQCKN 497

Query:   526 PLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYS--------SLIEAMKAMNAA 577
                ++  A     P+I+PR                 K  +         L + ++  +  
Sbjct:   498 RTLVKLIATACNMPVIVPRGRHVEAAVCHGAAMLGVKAANLDAPGKTVDLWDVIEQTSKP 557

Query:   578 GQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 614
             G V HP+     +    AKY +F +   +Q   R ++
Sbjct:   558 GDVCHPTTAEYERALLAAKYQVFLDQCTRQREYREMV 594

GO:0019150 "D-ribulokinase activity" evidence=RCA

GO:0046835 "carbohydrate phosphorylation" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4N676 MGG_08591 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 207/597 (34%), Positives = 312/597 (52%)

Query:    52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-----EGDCIEQSSTDIWHAI 106
             +S   ++G+DVGTGSARA L D +G +   A+  I++W+     EG   EQS+TDIW AI
Sbjct:     5 KSTEHYIGIDVGTGSARACLIDVTGDIKSLATKEIKLWQPAAGYEGSHYEQSTTDIWDAI 64

Query:   107 CAAVDSACSLANVDGEEVKGVGFAATCSLV----DADGSPVSVSW----NGDSR-RNIIV 157
             C  V    +   +D   + G+GF ATCSL     D D  P+ V+     N     RN+I+
Sbjct:    65 CFCVKKVVTDTGIDTSTIHGLGFDATCSLAVFSHDTD-EPIPVTGPDFSNASGEDRNVIL 123

Query:   158 WMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDW 217
             W+DHR + +AEKIN+    +L+Y GG +S EM+ PK+LW+K N+ +      ++ DL+D 
Sbjct:   124 WLDHRPLAEAEKINATGHNLLRYVGGKMSVEMEIPKILWLKNNMPKDLFDRCKFYDLADA 183

Query:   218 LSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDG 277
             L++ ATG +TRS C+TVCK  ++           G  D    GW ++F+  IGLGDL++ 
Sbjct:   184 LTHLATGGNTRSFCSTVCKQGFV---------PVGV-DGSVKGWQEDFYHTIGLGDLVED 233

Query:   278 HHAKIGRSVAFPGHPLGSG-----LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMES-- 330
                ++G      G  L +G     L+  AA ELGL PG  VG+ +IDA+AG +G + +  
Sbjct:   234 DFKRMGGVNGVSGEYLSAGELVGGLSDKAATELGLRPGIAVGSGVIDAYAGWIGTVGAKV 293

Query:   331 --VPXXXXXXXXXXXXXICH-RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWL 387
                P                 R+  V GTSTCH+A+S+  +F+ GVWGP+   ++P FW+
Sbjct:   294 NLTPDELDETVAPNDVAQAFTRLAAVAGTSTCHLAMSKEAVFVDGVWGPYRDVLIPGFWM 353

Query:   388 TEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALT 447
              EGGQSATG L+ ++IE H               ++++ LN  L  M  +  +P ++ L 
Sbjct:   354 AEGGQSATGELMRHMIETHAAFVETQAAAVAQGKNIYDYLNEHLRQMASKVQAPSISWLA 413

Query:   448 EDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 507
                    D  GNRSP+ADP  +G I GM+ D +   LALLY +T++ IA  TR IVE  N
Sbjct:   414 RHFFFYGDLWGNRSPVADPNMRGAIVGMSSDKTADSLALLYYSTMEFIALQTRQIVETMN 473

Query:   508 AHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE------NESXXXXXXXXXXXXX 561
               GH I ++   G   +N + +   A      +++PR       + +             
Sbjct:   474 KAGHSISSIFMSGSQCQNEILMDLIATACRMHVLIPRYVNAAVVHGAAMLGAKAASADAE 533

Query:   562 KRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMAQAL 618
              +   L   M  M+  G++++P++D  + K  DAKY IF E    Q   R  + +A+
Sbjct:   534 GKTEDLWSIMDRMSKPGRLVNPAQDQALSKLLDAKYEIFLEQCRSQQEYRRQVDKAI 590

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

SGD|S000002516 YDR109C "Putative kinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 854 (305.7 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
 Identities = 191/513 (37%), Positives = 287/513 (55%)

Query:    48 APPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE-GDCIEQSSTDIWHAI 106
             +P       ++GVDVGTGSARA + D+SG +L  A  PI+  +   + I QSS +IW+A+
Sbjct:    31 SPQDPEAKFYVGVDVGTGSARACVIDQSGNMLSLAEKPIKREQLISNFITQSSREIWNAV 90

Query:   107 CAAVDSACSLANVDGEEVKGVGFAATCSLVDADGS---PVSVSWN-GDSRRNIIVWMDHR 162
             C  V +    + VD E V+G+GF ATCSLV    +    ++V  +  ++ +NII+WMDHR
Sbjct:    91 CYCVRTVVEESGVDPERVRGIGFDATCSLVVVSATNFEEIAVGPDFTNNDQNIILWMDHR 150

Query:   163 AVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRA 222
             A+K+ E+INS     L+Y GG +S EM+ PK+ W+K NL+       ++ DL D+L+++A
Sbjct:   151 AMKETEEINSSGDKCLKYVGGQMSVEMEIPKIKWLKNNLEAGIFQDCKFFDLPDYLTFKA 210

Query:   223 TGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 282
             TG + RS C+ VCK  +L       +  +G  D+   GW  EF   IGL +L      ++
Sbjct:   211 TGKENRSFCSAVCKQGFL------PVGVEG-SDI---GWSKEFLNSIGLSELTKNDFERL 260

Query:   283 GRSVAFPGHPLGSG--LTPA---AAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXX 337
             G S+    + L +G  ++P    AA +LGL     V + +IDA+AG VG + + P     
Sbjct:   261 GGSLREKKNFLTAGECISPLDKKAACQLGLTEHCVVSSGIIDAYAGWVGTVAAKPESAVK 320

Query:   338 XXXXXXXX------ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGG 391
                              R+  V GTSTCH+ +S+N +F+ GVWGP+   +   FW  EGG
Sbjct:   321 GLAETENYKKDFNGAIGRLAAVAGTSTCHILLSKNPIFVHGVWGPYRDVLARGFWAAEGG 380

Query:   392 QSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIH 451
             QS TG LLD++I  H              VS FE LN  LE+++ +R    V +L + + 
Sbjct:   381 QSCTGVLLDHLITTHPAFTELSHMANLAGVSKFEYLNKILETLVEKRKVRSVISLAKHLF 440

Query:   452 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH 511
                D+HGNRSPIADP  +  I G ++D+S + LA++YL+  + I+  TR I+E     GH
Sbjct:   441 FYGDYHGNRSPIADPNMRACIIGQSMDNSIEDLAVMYLSACEFISQQTRQIIEVMLKSGH 500

Query:   512 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 544
             +I+ +   GG  +N L ++  AD  G PI++PR
Sbjct:   501 EINAIFMSGGQCRNSLLMRLLADCTGLPIVIPR 533

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BNF8 FGGY "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 164/355 (46%), Positives = 222/355 (62%)

Query:   260 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 319
             GWDD FW+ +GL DL+  +++KIG  V  PG  LGSGLTP AAK+LGL PG  V  SLID
Sbjct:   200 GWDDSFWKMVGLEDLVTDNYSKIGNQVLPPGASLGSGLTPEAAKDLGLPPGIAVAASLID 259

Query:   320 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 379
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S+N +F+PGVWGP++S
Sbjct:   260 AHAGGLGVIGA--DVKGHGLACEGQPVTSRLAVICGTSSCHMGISKNPIFVPGVWGPYFS 317

Query:   380 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 439
             AMVP FWL EGGQS TG L+D++++ H               S++  LN  L+ +  ++ 
Sbjct:   318 AMVPGFWLNEGGQSVTGKLIDHMVQGHAAFPELQAKATARGQSVYAYLNSHLDLI--KKA 375

Query:   440 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 499
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+ L      LA+LYLATVQ IA+GT
Sbjct:   376 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDLAILYLATVQAIAFGT 434

Query:   500 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 559
             R I+E   + GH I TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   435 RLIIEAMESAGHSISTLFLCGGLSKNPLFVQMHADITGLPVVLSQEVESVLVGAAVLGAC 494

Query:   560 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 614
                 ++S+ EAM  M+  G+V+ P  + K  +Y+D KY +F +L E Q    +IM
Sbjct:   495 ASGDFASVQEAMAKMSKVGKVVFPRHEDK--RYYDKKYQVFLKLVEHQKEYAAIM 547

GO:0070050 "neuron homeostasis" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

MGI|MGI:1922828 Fggy "FGGY carbohydrate kinase domain containing" [Mus musculus (taxid:10090)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 165/355 (46%), Positives = 220/355 (61%)

Query:   260 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 319
             GWDD FW+ IGL DLID +++KIG  V  PG  LG GLTP AA+ELGL  G  V  SLID
Sbjct:   202 GWDDSFWKMIGLEDLIDDNYSKIGNLVLLPGAALGIGLTPEAARELGLPSGIAVAASLID 261

Query:   320 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 379
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S++ +F+PGVWGP++S
Sbjct:   262 AHAGGLGVIGA--DVRGHGLTCEGQPVTSRLAVICGTSSCHMGISKDPVFVPGVWGPYYS 319

Query:   380 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 439
             AMVP FWL EGGQS TG L+D++++ H               S++  LN  L+ +  ++ 
Sbjct:   320 AMVPGFWLNEGGQSVTGKLIDHMVQGHPAFPELQAKATARCQSIYAYLNSHLDLI--KKA 377

Query:   440 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 499
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+TL      LA+LYLATVQ IA+GT
Sbjct:   378 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLTLSQDLDDLAILYLATVQAIAFGT 436

Query:   500 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 559
             R I+E   A GH + TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   437 RFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGAC 496

Query:   560 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 614
                 ++S+ EAM  M+  G+V+ P    K  KY+D KY +F  + E Q    +IM
Sbjct:   497 ASGDFTSVQEAMARMSKVGKVVFPEHADK--KYYDKKYQVFLRMVEHQKEYSAIM 549

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0070050 "neuron homeostasis" evidence=ISO

UNIPROTKB|Q96C11 FGGY "FGGY carbohydrate kinase domain-containing protein" [Homo sapiens (taxid:9606)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 163/355 (45%), Positives = 220/355 (61%)

Query:   260 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 319
             GWDD FW+ IGL D +  +++KIG  V  PG  LG+GLTP AA++LGL+PG  V  SLID
Sbjct:   201 GWDDSFWKMIGLEDFVADNYSKIGNQVLPPGASLGNGLTPEAARDLGLLPGIAVAASLID 260

Query:   320 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 379
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S++ +F+PGVWGP++S
Sbjct:   261 AHAGGLGVIGA--DVRGHGLICEGQPVTSRLAVICGTSSCHMGISKDPIFVPGVWGPYFS 318

Query:   380 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 439
             AMVP FWL EGGQS TG L+D++++ H               S++  LN  L+ +  ++ 
Sbjct:   319 AMVPGFWLNEGGQSVTGKLIDHMVQGHAAFPELQVKATARCQSIYAYLNSHLDLI--KKA 376

Query:   440 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 499
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+ L      LA+LYLATVQ IA GT
Sbjct:   377 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLKLSQDLDDLAILYLATVQAIALGT 435

Query:   500 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 559
             R I+E   A GH I TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   436 RFIIEAMEAAGHSISTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAVLGAC 495

Query:   560 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 614
                 ++S+ EAM  M+  G+V+ P    K  KY+D KY +F +L E Q    +IM
Sbjct:   496 ASGDFASVQEAMAKMSKVGKVVFPRLQDK--KYYDKKYQVFLKLVEHQKEYLAIM 548

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0070050 "neuron homeostasis" evidence=IMP

UNIPROTKB|F1LSP9 Fggy "Protein Fggy" [Rattus norvegicus (taxid:10116)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 163/355 (45%), Positives = 220/355 (61%)

Query:   260 GWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID 319
             GWDD FW+ IGL DLI  ++ KIG  V  PG  LGSGL P AA+ELGL  G  V  SLID
Sbjct:   202 GWDDSFWKMIGLEDLIGDNYNKIGNLVLPPGASLGSGLIPEAARELGLPSGIAVAASLID 261

Query:   320 AHAGGVGVMESVPXXXXXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS 379
             AHAGG+GV+ +               +  R+ ++CGTS+CHM +S++ +F+PGVWGP++S
Sbjct:   262 AHAGGLGVIGA--DVRGHGLTCEGQPVTSRLAVICGTSSCHMGISKDPIFVPGVWGPYFS 319

Query:   380 AMVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERN 439
             AMVP FWL EGGQS TG L+D+++++H               S++  LN  L+ +  ++ 
Sbjct:   320 AMVPGFWLNEGGQSVTGKLIDHMVQSHPAFPELQAKATARCQSIYAYLNSHLDLI--KKA 377

Query:   440 SPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT 499
              P V  LT D+HV PDFHGNRSP+AD   KG++ G+TL      LA+LYLAT+Q IA+GT
Sbjct:   378 QP-VGFLTVDLHVWPDFHGNRSPLADLTLKGMVTGLTLSRDLDDLAVLYLATIQAIAFGT 436

Query:   500 RHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXX 559
             R I+E   A GH + TL  CGGL+KNPLF+Q HADI G P++L +E ES           
Sbjct:   437 RFIIETMEAAGHSLSTLFLCGGLSKNPLFVQMHADITGMPVVLSQEVESVLVGAAILGAC 496

Query:   560 XXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIM 614
                 ++S+ EAM  M+  G+V+ P +  K  KY+D KY +F  + E Q    +IM
Sbjct:   497 ASGDFASVQEAMARMSKVGKVVFPERADK--KYYDKKYQVFLRMVEHQKEYSAIM 549

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0070050 "neuron homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2AJL3	FGGY_MOUSE	2, ., 7, ., 1, ., -	0.4893	0.8610	0.9655	yes	no
Q6NUW9	FGGY_DANRE	2, ., 7, ., 1, ., -	0.4590	0.8626	0.9798	yes	no
Q96C11	FGGY_HUMAN	2, ., 7, ., 1, ., -	0.4850	0.8691	0.9764	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G30310	ribitol kinase, putative; ribitol kinase, putative; FUNCTIONS IN- carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN- carbohydrate metabolic process; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Carbohydrate kinase, FGGY (InterPro-IPR000577), Carbohydrate kinase, FGGY, C-terminal (InterPro-IPR018485), Carbohydrate kinase, FGGY, N-terminal (InterPro-IPR018484), Carbohydrate kinase, FGGY-related (InterPro-IPR006003); Has 9520 Blast hits to 8571 proteins in 1304 sp [...] (579 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ASD2	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosy [...] (674 aa)							•		0.827
	BXL3	BXL3 (beta-xylosidase 3); hydrolase, hydrolyzing O-glycosyl compounds; encodes a protein simila [...] (773 aa)							•		0.782
	AT5G57655	xylose isomerase family protein; xylose isomerase family protein; FUNCTIONS IN- xylose isomeras [...] (477 aa)	•					•	•		0.747
	ASD1	ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosy [...] (678 aa)							•		0.716
	AT5G67540	glycosyl hydrolase family protein 43; glycosyl hydrolase family protein 43; FUNCTIONS IN- hydro [...] (471 aa)							•		0.643
	POLD2	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT); DNA binding / DNA-directed DNA polymerase; DNA POLY [...] (441 aa)		•					•		0.629
	BGLU45	BGLU45 (BETA-GLUCOSIDASE 45); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl com [...] (520 aa)							•		0.502
	FT1	FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/ transferase, transferring glycosyl groups; memb [...] (558 aa)							•		0.462
	AT5G49650	xylulose kinase, putative; xylulose kinase, putative; FUNCTIONS IN- xylulokinase activity, phos [...] (558 aa)			•				•		0.456
	AT2G45290	transketolase, putative; transketolase, putative; FUNCTIONS IN- catalytic activity, transketola [...] (741 aa)	•						•		0.439

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	619
cd07782	536	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotubercu	0.0
TIGR01315	541	TIGR01315, 5C_CHO_kinase, FGGY-family pentulose ki	0.0
COG1069	544	COG1069, AraB, Ribulose kinase [Energy production	0.0
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	1e-118
cd07783	484	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase	1e-103
cd07781	498	cd07781, FGGY_RBK, Ribulokinases; belongs to the F	4e-86
PRK04123	548	PRK04123, PRK04123, ribulokinase; Provisional	1e-79
cd07804	492	cd07804, FGGY_XK_like_1, uncharacterized xylulose	3e-79
cd00366	435	cd00366, FGGY, FGGY family of carbohydrate kinases	3e-76
TIGR01234	536	TIGR01234, L-ribulokinase, L-ribulokinase	3e-57
cd07805	514	cd07805, FGGY_XK_like_2, uncharacterized xylulose	3e-56
COG1070	502	COG1070, XylB, Sugar (pentulose and hexulose) kina	9e-56
pfam02782	193	pfam02782, FGGY_C, FGGY family of carbohydrate kin	7e-54
cd07803	482	cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup	7e-48
cd07779	488	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like	2e-43
cd07802	447	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil	1e-41
TIGR01312	481	TIGR01312, XylB, D-xylulose kinase	9e-36
cd07809	487	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup	1e-28
cd07774	430	cd07774, FGGY_1, uncharacterized subgroup; belongs	2e-27
cd07811	493	cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup	3e-27
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	4e-27
pfam00370	245	pfam00370, FGGY_N, FGGY family of carbohydrate kin	4e-25
cd07770	440	cd07770, FGGY_GntK, Gluconate kinases; a subfamily	3e-23
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	9e-23
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	2e-19
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	5e-18
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	1e-17
cd07789	495	cd07789, FGGY_CsGK_like, Cellulomonas sp	2e-17
TIGR01314	505	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	4e-17
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	3e-16
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	2e-15
cd07810	490	cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup	1e-14
cd07775	452	cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf	5e-13
PRK15027	484	PRK15027, PRK15027, xylulokinase; Provisional	2e-12
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	6e-12
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	1e-11
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	2e-11
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	2e-11
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	5e-11
PRK10939	520	PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P	5e-11
cd07795	496	cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi	6e-11
PRK10331	470	PRK10331, PRK10331, L-fuculokinase; Provisional	2e-09
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	2e-08
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	2e-08
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	5e-08
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	1e-07
PRK10331	470	PRK10331, PRK10331, L-fuculokinase; Provisional	2e-07
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	4e-07
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	2e-06
PLN02295	512	PLN02295, PLN02295, glycerol kinase	2e-06
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	4e-06
cd07794	470	cd07794, FGGY_GK_like_proteobact, Proteobacterial	5e-06
PRK10939	520	PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; P	7e-06
PLN02295	512	PLN02295, PLN02295, glycerol kinase	2e-05
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	2e-05
TIGR02628	465	TIGR02628, fuculo_kin_coli, L-fuculokinase	2e-05
cd07773	448	cd07773, FGGY_FK, L-fuculose kinases; a subfamily	5e-05
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	7e-05
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	8e-05
TIGR02628	465	TIGR02628, fuculo_kin_coli, L-fuculokinase	2e-04
cd07775	452	cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subf	7e-04
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	0.001
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	0.004
cd07773	448	cd07773, FGGY_FK, L-fuculose kinases; a subfamily	0.004

>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases

 Score =  894 bits (2312), Expect = 0.0
 Identities = 320/558 (57%), Positives = 401/558 (71%), Gaps = 27/558 (4%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE-GDCIEQSSTDIWHAICAAVDSACS 115
           ++GVDVGTGSARAGLFD  G+LL  A  PIQIW    D +EQSS DIW A+C AV +A +
Sbjct: 3   YIGVDVGTGSARAGLFDAKGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAVCQAVKAAIA 62

Query: 116 LANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
            A VD E+VKG+GF ATCSLV  D +G P+SVS +GD+ +NIIVWMDHRA+ +AE+IN+ 
Sbjct: 63  GAGVDPEQVKGIGFDATCSLVVLDKEGQPLSVSPSGDNEQNIIVWMDHRAISEAERINAT 122

Query: 174 NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 233
             PVL+Y GG +SPEM+ PKLLW+KENL E+WS   ++ DL D+L++RATG +TRSLCT 
Sbjct: 123 GHPVLKYVGGVISPEMETPKLLWLKENLPETWSRAGKFFDLPDFLTWRATGSETRSLCTL 182

Query: 234 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPL 293
           VCKWTYL H              E  GWDD+F E IGL DL++ + AKIG  V  PG PL
Sbjct: 183 VCKWTYLAH--------------EKKGWDDDFLEAIGLEDLVEENFAKIGEDVLPPGEPL 228

Query: 294 GSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLV 353
           G+GLT  AA ELGL PGTPVG  LIDAHAGG+GV+ +           E + +  R+ L+
Sbjct: 229 GNGLTAEAAAELGLPPGTPVGAGLIDAHAGGIGVLGADLS------GCEADDLTSRLALI 282

Query: 354 CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLA 413
           CGTSTCHMA+S + +F+PGVWGP++SAMVP  WL EGGQSATGALLD+II++H A   L 
Sbjct: 283 CGTSTCHMALSPDPVFVPGVWGPYFSAMVPGLWLNEGGQSATGALLDHIIQSHPAFPELK 342

Query: 414 NRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 473
            +A    +S++  LN  LE +  E+ S   A LT D+HVLPDFHGNRSP+ADP  +G+I 
Sbjct: 343 EQAGESGISIYAYLNARLEELAAEKGSV--AYLTRDLHVLPDFHGNRSPLADPNLRGVIS 400

Query: 474 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA 533
           G+TLD+S   LA LYLAT+Q IAYGTRHI+E  NA GHKIDTL ACGGL+KNPLF+Q HA
Sbjct: 401 GLTLDTSLDDLARLYLATLQAIAYGTRHIIEAMNAAGHKIDTLFACGGLSKNPLFVQLHA 460

Query: 534 DIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYH 593
           D  G P++LP+E E+VLLGAA+LGAVAA  + SL EAM AM+  G+ + P  + ++K YH
Sbjct: 461 DATGLPVVLPKEEEAVLLGAAMLGAVAAGDFPSLKEAMAAMSRPGRTVKP--NTELKAYH 518

Query: 594 DAKYLIFRELFEQQVSQR 611
           D KY +F ++ E Q   R
Sbjct: 519 DRKYRVFLKMQEHQREYR 536

This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 536

>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase

 Score =  591 bits (1526), Expect = 0.0
 Identities = 249/558 (44%), Positives = 345/558 (61%), Gaps = 21/558 (3%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
           ++GVDVGTGSARA + D +G +L  A+  I+ W        QSS  IW AIC  V    +
Sbjct: 2   YIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLA 61

Query: 116 LANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
            + VD   VKG+GF ATCSLV    DG P+ VS NG + +NII+WMDHRA+ +AEKIN+ 
Sbjct: 62  ESKVDPNSVKGIGFDATCSLVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINAT 121

Query: 174 NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 233
           N  +L+Y GG +S EM+ PK+LW+K N+        ++ DL+D+L++RATG + RS C+ 
Sbjct: 122 NHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEIRSFCSV 181

Query: 234 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPL 293
           VCKW ++                   GW ++F+E IGLG+L+  +  ++G S   PG  +
Sbjct: 182 VCKWGFVPVD------------GSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGELV 229

Query: 294 GSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLV 353
           G GLT  AA+ELGL  GT VG+ LIDAHAG +G   +V   V+E  +  +     R+  V
Sbjct: 230 GGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIG---TVGAKVAENGDVSQ--AFTRLAAV 284

Query: 354 CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLA 413
            GTSTCHMA+++  +F+PGVWGP+  A++P +WL EGGQSA G L+D+++E HVA     
Sbjct: 285 AGTSTCHMAMTKGPVFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETV 344

Query: 414 NRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC 473
             A +   ++++ LN  L+ M  + N+P ++ L    HV PD  GNRSPIADP  +G+I 
Sbjct: 345 KEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPNMRGVII 404

Query: 474 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA 533
           G+++D S+  LALLY AT++ IAYGTR IVE  N  GH I ++   GG  +NPL +Q  A
Sbjct: 405 GLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIA 464

Query: 534 DIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYH 593
           D    P+++P  NE+VL GAA+LGA AA    SL +AM  M+  G+ + P  DP  KK H
Sbjct: 465 DACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWPRGDPA-KKLH 523

Query: 594 DAKYLIFRELFEQQVSQR 611
           D KY IF +L   Q   R
Sbjct: 524 DRKYEIFLQLARTQQEYR 541

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PMID:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. Length = 541

>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion]

 Score =  561 bits (1447), Expect = 0.0
 Identities = 234/567 (41%), Positives = 326/567 (57%), Gaps = 38/567 (6%)

Query: 53  SRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAV 110
             +  +GVDVGTGSARAG+FD   G LL  A  P  +W+ G +  EQ S D W A+CAAV
Sbjct: 1   MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAV 60

Query: 111 DSACSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 168
               + A VD  +V G+G  ATCSLV  D DG+P++V     +  N+I+WMDHRAV++AE
Sbjct: 61  RDVVAKAGVDPADVVGIGVDATCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAE 120

Query: 169 KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTR 228
           +IN+   PVL Y GG +SPEM  PKL+W+K      W       DL+DWL+++ TG   R
Sbjct: 121 EINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIAR 180

Query: 229 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 288
           S CT  CKW +L H              E   W  +F+++IGL DL +   +K+   +  
Sbjct: 181 SRCTAGCKWNWLEH--------------EGGLWSADFFDKIGLDDLRE-LDSKLPEDIVP 225

Query: 289 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICH 348
            G P+G GLTP AA+ELGL  GT V   +IDAHAG VGV          A+         
Sbjct: 226 AGEPVG-GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGG--------AQPG------- 269

Query: 349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVA 408
            + ++ GTSTCHM +S    F+PGVWGP+  A++P  WL EGGQSATG LLD+++  H A
Sbjct: 270 SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPA 329

Query: 409 SRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKS 468
                         ++E L   LE +     +  +  L   +HVL  F+GNRSP+ADP+ 
Sbjct: 330 PLEQLAAHPKDGEEIYESLAQRLELL--TEAAAAIPPLASGLHVLDWFNGNRSPLADPRL 387

Query: 469 KGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF 528
           KG+I G+TLD+S + LALLY A ++  A+GTR I+E     G  IDTL A GG+ KNPL 
Sbjct: 388 KGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLL 447

Query: 529 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPK 588
           +Q +AD+ G P+++P  +++VLLGAA+  AVAA  +  L  A +AM++A +   P   P+
Sbjct: 448 MQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLPP-PPE 506

Query: 589 VKKYHDAKYLIFRELFEQQVSQRSIMA 615
               ++  Y  + +L +      + + 
Sbjct: 507 RAARYERLYRRYLQLHDDAEKHYARVM 533

Length = 544

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  359 bits (924), Expect = e-118
 Identities = 177/527 (33%), Positives = 252/527 (47%), Gaps = 69/527 (13%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKE--GDCIEQSSTDIWHAICAAVDS 112
              +GVDVGT S RAG+FD +G+ L SAS P  +         EQ   D W A+  AV +
Sbjct: 1   KYVIGVDVGTESVRAGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRA 60

Query: 113 ACSLANVDGEEVKGVGFAATCS---LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 169
           A + A VD ++V  +G  AT      +DA+G P+            ++W DHRA  QA  
Sbjct: 61  AVAAAGVDPDQVAALGVDATSCTVVPLDAEGQPL---------TPALLWDDHRAADQANA 111

Query: 170 INSRNSPVLQ-YCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTR 228
           IN    P L  Y G  VSPE   PK+LW+ +   ++W+    +++  DWL +R TG    
Sbjct: 112 INEVGGPALWDYGGKIVSPEWMLPKVLWLLQEAPDTWNRADHFLEAPDWLGWRLTGKRPV 171

Query: 229 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 288
           + C+ V KW Y                     W +  ++++G   L     AK+   VA 
Sbjct: 172 ATCSAVAKWGYDAREG---------------EWANSVFDKLGDPRL---TAAKLPAVVA- 212

Query: 289 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICH 348
           P    G GL P AA++ GL PGT V   + DAHAG + V    P                
Sbjct: 213 PLTRAG-GLLPEAAEKTGLPPGTAVAVGMTDAHAGQIAVGVVTPG--------------- 256

Query: 349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVA 408
           R VLV GTS  H  VS        + G  +SA++P +W  EGGQSATG +  + ++    
Sbjct: 257 RFVLVLGTSIVHKGVSEELHED-EMCGAVYSAILPGYWWLEGGQSATGGIFLWFVDVGRL 315

Query: 409 SRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKS 468
           + +  + A  + V+L                          +  L  F+GNRSP  DP+ 
Sbjct: 316 AATF-DEAQEKGVALDAAAA-------------ERGPQLRGLLALDRFNGNRSPFVDPEL 361

Query: 469 KGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK-IDTLLACGGLAKNPL 527
           +G + G+TL +     A +Y A ++ +A+GTR IVE  +  G+  +  L A GG A++ L
Sbjct: 362 RGFLLGLTLPTDR---ADIYRALLEAVAFGTRLIVEAFHGLGYPEVGPLYAAGGGARSHL 418

Query: 528 FLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM 574
           ++Q HAD+ G P+ L  E E+  LGAA+L AVAA  Y  L EA  AM
Sbjct: 419 WMQIHADVTGRPVRLAAEKEAPALGAALLAAVAAGHYEDLPEAAAAM 465

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases

 Score =  320 bits (822), Expect = e-103
 Identities = 177/552 (32%), Positives = 263/552 (47%), Gaps = 82/552 (14%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQI-WKEGDCIEQSSTDIWHAICAAVDSAC 114
             LG+D GT S RAGLFD +G+ LGSA++P           EQ+  D W A+ AAV  A 
Sbjct: 2   YVLGIDGGTESVRAGLFDTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVREAL 61

Query: 115 SLANVDGEEVKGVGFAATCSLV---DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI- 170
           + A +   +V  +    TC  V   DA G+P+         R  I+WMD RA ++A ++ 
Sbjct: 62  AEAGIAAPDVAALCCDTTCCTVVALDAAGTPL---------RPAILWMDVRAAEEAARVL 112

Query: 171 -NSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 229
               ++  L   GG VS E   PK +W+K+N  + ++      +  D+L++R TG    S
Sbjct: 113 ATGDDALRLNGSGGGVSAEWMVPKAMWLKKNEPDVYARAATICEAQDYLNFRLTGRWCGS 172

Query: 230 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289
           L     +W Y               D    G  ++ +  +G+ DL+D    K+ + V   
Sbjct: 173 LNNAAVRWNY---------------DTLNGGPPEDLYAALGMPDLLD----KLPQRVLAV 213

Query: 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 349
           G  +GS LT  AA  LGL  GTPV     DA  G +G+    P                +
Sbjct: 214 GEVVGS-LTDEAAAHLGLPGGTPVAQGGADAFVGMIGLGVIEP---------------GQ 257

Query: 350 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN---- 405
           M L+ G+S  H+ V+  +   PGVWG +  A+ P  WL EGGQ++TG++L +  +     
Sbjct: 258 MALITGSSHLHLGVTDREFHAPGVWGTYPDAVYPGTWLVEGGQTSTGSVLKWFKDLIGGG 317

Query: 406 HVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 465
                   N  A+                        V   +E + VL  F GNR+P  D
Sbjct: 318 DDNGYDELNEEAAA-----------------------VPPGSEGLVVLDYFQGNRTPYTD 354

Query: 466 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 525
           P ++G I G+TL  +    A +Y A ++G+AYGTRHI +   A G+++  ++A GG  ++
Sbjct: 355 PLARGAIWGLTLGHTR---AHVYRAILEGVAYGTRHIFDAMEAAGYEVSEIVAAGGATRS 411

Query: 526 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSK 585
            L+LQ HAD+IG P  L  E ++ LLG AIL AV A  ++ L EA  AM    +VI P  
Sbjct: 412 RLWLQIHADVIGVPFELTEETDAPLLGCAILAAVGAGIFADLTEAADAMVRPERVIEP-- 469

Query: 586 DPKVKKYHDAKY 597
           DP+  + +    
Sbjct: 470 DPERHEEYARYL 481

This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases

 Score =  277 bits (710), Expect = 4e-86
 Identities = 156/543 (28%), Positives = 234/543 (43%), Gaps = 74/543 (13%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIE--------QSSTDIWHAICA 108
           +G+D GT S RA L D E+G  L SA         G+ +         Q   D    +  
Sbjct: 4   IGLDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLET 63

Query: 109 AVDSACSLANVDGEEVKGVGFAATCS---LVDADGSPVSV--SWNGDSRRNIIVWMDHRA 163
           A+      A VD ++V G+G   T S    VD DG+P+ +   +  +    + +W DH A
Sbjct: 64  AIPEVLKEAGVDPDDVVGIGVDTTGSTPIPVDEDGTPLCLLPEFKNNPHAYVKLWKDHTA 123

Query: 164 VKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLS 219
            K+A++I +    R    L+Y GG  S E   PK+L V     E +     W++  DW+ 
Sbjct: 124 QKEADRITALAHERGEDYLRYYGGVYSSEWFWPKILHVLREAPEVYEAADSWVEACDWIP 183

Query: 220 YRATGDD-----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEI--GLG 272
            + TG        RS C         GH  M      G          DEF   +   L 
Sbjct: 184 AQLTGTTDPKKLKRSRCA-------AGHKAMWHEEWGGLPS-------DEFLSALDPKLA 229

Query: 273 DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVP 332
            + D    K+   +   G   G GL+P  A  LGL  G  V     DAH G VG      
Sbjct: 230 GVRD----KLSGPIYTSGEKAG-GLSPEWAARLGLPEGIAVAVGAFDAHMGAVGA----- 279

Query: 333 ESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 392
                A+          +V V GTSTC + ++     +PG+ G    +++P +   E GQ
Sbjct: 280 ----GAEPGT-------LVKVIGTSTCDIMLAEKVGDVPGICGVVDGSIIPGYIGYEAGQ 328

Query: 393 SATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 452
           SA G +  + +EN V S      A  R   +  LL+              +      +  
Sbjct: 329 SAVGDIFAWFVENLVPSLYEEE-AKRRGDEVLPLLSEKAAK---------LPPGESGLLA 378

Query: 453 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 512
           L  ++GNR+ + D +  G+I G+TL +       +Y A ++  A+G R I+E     G  
Sbjct: 379 LDWWNGNRTVLVDQRLTGLILGLTLQTKA---EEIYRALIEATAFGARAIIERFEEQGVP 435

Query: 513 IDTLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAM 571
           ++ ++A GG+A KNPL +Q +AD++  PI +    ++  LGAAI  AVAA  Y ++ EA 
Sbjct: 436 VERVIAAGGIAQKNPLLMQIYADVLNRPIKVVASEQTCALGAAIFAAVAAGVYPTIEEAQ 495

Query: 572 KAM 574
            AM
Sbjct: 496 AAM 498

This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498

>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional

 Score =  261 bits (669), Expect = 1e-79
 Identities = 161/576 (27%), Positives = 251/576 (43%), Gaps = 76/576 (13%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIE-------QSSTDIWHAICAA 109
           +G+D GT S RA L D  +G+ L +A      W +G  ++       Q   D   ++ AA
Sbjct: 6   IGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAA 65

Query: 110 VDSACSLANVDGEEVKGVGF---AATCSLVDADGSPVSVSWNGDSRRN--IIVWMDHRAV 164
           + +    A VD   V G+G     +T + VDADG+P+++        +  + +W DH A 
Sbjct: 66  IPAVLKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQ 125

Query: 165 KQAEKIN----SRNSPVLQ-YCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLS 219
           ++AE+IN     R    L  Y GG  S E    K+L V       +     W++  DW+ 
Sbjct: 126 EEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAASWVEACDWVV 185

Query: 220 YRATGDDT-----RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEI--GLG 272
              TG        RS C         GH  +   +  G           +F++ +   L 
Sbjct: 186 ALLTGTTDPQDIVRSRCA-------AGHKALWHESWGGLPS-------ADFFDALDPLLA 231

Query: 273 DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVP 332
             +     K+       G P G  LT   A+ LGL  G  V     DAH G VG      
Sbjct: 232 RGLRD---KLFTETWTAGEPAG-TLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA----- 282

Query: 333 ESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQ 392
                A+          +V V GTSTC + ++  +  +PG+ G    ++VP     E GQ
Sbjct: 283 ----GAEPGT-------LVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQ 331

Query: 393 SATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHV 452
           SA G +  +     V      + A +R   L ELL          +  P    L      
Sbjct: 332 SAVGDIFAWFARLLV-PPEYKDEAEARGKQLLELLTEAAA-----KQPPGEHGLV----A 381

Query: 453 LPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHK 512
           L  F+G R+P+AD + KG+I G+TL +    +   Y A ++  A+GTR I+E     G  
Sbjct: 382 LDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFEDQGVP 438

Query: 513 IDTLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAM 571
           ++ ++A GG+A KNP+ +Q +AD++  PI +   ++   LGAAI  AVAA  Y  + EA 
Sbjct: 439 VEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQ 498

Query: 572 KAMNAA-GQVIHPSKDPKVKKYHDAKYLIFRELFEQ 606
           +AM +   +   P  DP+    ++  Y  +++L + 
Sbjct: 499 QAMASPVEKTYQP--DPENVARYEQLYQEYKQLHDY 532

Length = 548

>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score =  259 bits (663), Expect = 3e-79
 Identities = 157/563 (27%), Positives = 244/563 (43%), Gaps = 90/563 (15%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQI------WKEGDCIEQSSTDIWHAICAAV 110
            LG+D+GT S +A LFD  G++L  AS   ++      W      EQ     W A+C  +
Sbjct: 2   LLGIDIGTSSTKAVLFDLDGEVLAQASREYELSTPQPGW-----AEQDPEVWWDAVCEII 56

Query: 111 DSACSLANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 167
               + A VD  E+K +G +    T   VD DG P+         R  I++MD RA ++ 
Sbjct: 57  RELVAKAGVDPSEIKAIGVSGQGPTVVPVDKDGRPL---------RPAIIYMDRRAKEEV 107

Query: 168 EKINSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD 225
           E++  R     + +  G  +  +   PK+LW K N  E W    +++  + ++ Y+ TG 
Sbjct: 108 EELKERIGEEEIFERTGNPLDSQYVAPKILWFKRNEPEVWERTRKFLQSNSYIVYKLTG- 166

Query: 226 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS 285
                       +          +  G  D+    W +E  + +G+ + +     K+ R 
Sbjct: 167 ------ELAVDHS--------SASGSGLYDIRKGEWSEELLDLLGIPEDL---LPKLVR- 208

Query: 286 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEE 343
              PG  +G  +T  AA+E GL  GTPV     DA A   G GV+E              
Sbjct: 209 ---PGDIVG-TVTEEAAEETGLPAGTPVVAGGADAAAAALGAGVVE-------------- 250

Query: 344 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYII 403
                  + + GTS   + V+    F P +       +VP  +L  GG S  GA L +  
Sbjct: 251 ---PGDAMEMLGTSGVIIVVTDRPKFDPRLI--SSPHVVPGTYLLNGGMSTGGAALRWFR 305

Query: 404 ENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI 463
           +N               +  ++ L    E          V    + +  LP   G R+PI
Sbjct: 306 DN------FGPEETEGGLDAYDELEEEAEK---------VPPGADGLLFLPYLAGERTPI 350

Query: 464 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA 523
            DP ++G+  G+TL  +    A LY A ++G+AY  RHI+E     G K+  ++A GG A
Sbjct: 351 WDPDARGVFFGLTLGHTR---AHLYRAVLEGVAYALRHILEIAEEAGVKVSRVVAVGGGA 407

Query: 524 KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 583
           K+ L++Q  AD++G P++ P       LG A+L AVA   Y  L E  KA     + I P
Sbjct: 408 KSRLWMQIKADVLGLPVVTPENTVGASLGDALLAAVAVGVYDDLEEV-KAWVKVRETIEP 466

Query: 584 SKDPKVKKYHDAKYLIFRELFEQ 606
             DP+  + +D  Y I+REL+  
Sbjct: 467 --DPENHEIYDEYYEIYRELYPA 487

This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492

>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases

 Score =  249 bits (638), Expect = 3e-76
 Identities = 138/508 (27%), Positives = 210/508 (41%), Gaps = 81/508 (15%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIW--KEGDCIEQSSTDIWHAICAAVDSAC 114
            LG+DVGT S +A LFDE G +L  AS   ++   K G   EQ   +IW A+C  +    
Sbjct: 2   ILGLDVGTTSVKAVLFDEQGNILAEASREYEVSYPKPGWV-EQDPEEIWQALCEVL--RE 58

Query: 115 SLANVDGEEVKGVGFAAT-CS--LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 171
           + A   G ++  +G ++      LVDA+G P+            I+W D R  ++ E++ 
Sbjct: 59  AAAQASGGQIAAIGVSSQGEGVILVDANGRPL---------TPAILWQDSRTAEECERLE 109

Query: 172 SRNSPVLQY--CGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 229
            +      Y   G    P    PKLLW+KE+  E +S   + + ++D+L+YR TG+    
Sbjct: 110 EQIGADEIYERTGLRPHPMFSGPKLLWLKEHRPEIYSKADKILTVADYLAYRLTGEFVID 169

Query: 230 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289
                    +              RD     WD E      L +        +   V  P
Sbjct: 170 YSNASRTMLFDIQT----------RD-----WDPE------LLEAAGIPRELLPE-VVPP 207

Query: 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 349
           G   G+ ++  AA  LGL PGTPV     D     +G                +E     
Sbjct: 208 GEVAGA-ISAEAAALLGLPPGTPVVAGGHDQQCAALGAGA------------VDEGDA-- 252

Query: 350 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVAS 409
             L  GTS    AVS  +         + +A +P  ++TE      GALL +  +     
Sbjct: 253 -ALSAGTSEVITAVSEPEPATDEGLLCYPAA-IPGKYVTEASFFTGGALLRWFRDEFGLR 310

Query: 410 RSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSK 469
                       S +E                   +    + +LP F G+ +P  DP ++
Sbjct: 311 ED---------GSDYEAAAQEAP-----------NSGPNGLLILPHFSGSGTPYWDPAAR 350

Query: 470 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL 529
           G I G+TL ++    A +Y A ++GIAY  R  ++   A G KID +   GG +++ L+L
Sbjct: 351 GAIFGLTLGTT---RADIYRALLEGIAYELRDNLDALEAAGIKIDRIRVTGGGSRSDLWL 407

Query: 530 QQHADIIGCPIILPRENESVLLGAAILG 557
           Q  ADI G P+  P   E+  LGAA+L 
Sbjct: 408 QILADIFGLPVETPEVREAGALGAALLA 435

This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435

>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase

 Score =  201 bits (512), Expect = 3e-57
 Identities = 153/544 (28%), Positives = 244/544 (44%), Gaps = 70/544 (12%)

Query: 58  LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEG------------DCIEQSSTDIWH 104
           +GVD GT S RA   D  +G+ + +A    + W +G            D   Q   D   
Sbjct: 4   IGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIE 63

Query: 105 AICAAVDSACSLANVDGEEVKGVGF---AATCSLVDADGSPVSVSWNGDSRRN--IIVWM 159
            + AA+ +  +   VD  +V G+G    A T + +D+DG+P+ +        +    +W 
Sbjct: 64  VLEAAIPTVLAELGVDPADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWK 123

Query: 160 DHRAVKQAEKIN----SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLS 215
            H A ++A++IN    +     L   GG +S E    K+L + E     +    RW++L+
Sbjct: 124 HHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADRWIELA 183

Query: 216 DWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGW-DDEFWEEIGLGDL 274
           DW+  + +GD  R  CT        G+  +           E+ G+    F++E+    L
Sbjct: 184 DWIVAQLSGDIRRGRCTA-------GYKALWH---------ESWGYPSASFFDELNPI-L 226

Query: 275 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPES 334
                 K+   +   G P G+ LTP  A+  GL  G  V     DAH G V    + P  
Sbjct: 227 NRHLPDKLFTDIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQP-- 283

Query: 335 VSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSA 394
                          +V + GTSTCH+ +   +  +PG+ G     +VP F   E GQSA
Sbjct: 284 -------------GALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSA 330

Query: 395 TGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLP 454
            G +  +  +  V    L   A +    L E L+   E+   +       +    +  L 
Sbjct: 331 VGDIFAWFGKVCV-PPELKTEANASQKQLHEALS---EAAAKQ------PSGEHGLVALD 380

Query: 455 DFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID 514
            F+GNRSP+ D + KG+I G+TL +      LLY A ++  A+GTR I+E     G  ++
Sbjct: 381 WFNGNRSPLVDQRLKGVITGLTLATDAP---LLYRALIEATAFGTRMIMETFTDSGVPVE 437

Query: 515 TLLACGGLA-KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKA 573
            L+A GG+A KNP+ +Q +AD+   P+ +   +++  LGAAI  AVAA  Y+ +  A   
Sbjct: 438 ELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAK 497

Query: 574 MNAA 577
           M +A
Sbjct: 498 MGSA 501

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli [Energy metabolism, Sugars]. Length = 536

>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score =  197 bits (504), Expect = 3e-56
 Identities = 140/572 (24%), Positives = 232/572 (40%), Gaps = 89/572 (15%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQI-WKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D+GT   +A L    G+L+ SA+   +  +  G   EQ   D W A+  A       
Sbjct: 3   LAIDLGTSGVKAALVSPDGRLVASATEAYETHYLPGGGAEQDPEDWWDAVVRATRRLLED 62

Query: 117 ANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
           + V+   V G+ F+        VD DG P+         R  I+WMD RA  +AE++   
Sbjct: 63  SGVNPRRVAGISFSGQMQGVVPVDEDGRPL---------RPAIIWMDQRAAPEAERLMEG 113

Query: 174 NSPVLQY----------CGGA-VSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRA 222
              V  Y           GGA  S +    K+LW+++N  + ++  ++++D  D+L+ R 
Sbjct: 114 LGKVAGYGLKLLKWLRLTGGAPKSGKDPLAKILWLRDNEPDVYAKTYKFLDAKDYLNLRL 173

Query: 223 TGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI 282
           TG       T          A +  + +   RD     W +E     G+         K+
Sbjct: 174 TG----RFATDPDD------ASLTWLTDN--RDGRIR-WSEELLAAAGI------DREKL 214

Query: 283 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENE 342
              V      +G  + P AA+ELGL  GTPV     DA A  VG         + A  + 
Sbjct: 215 PELVP-STDVVG-TVLPEAARELGLPEGTPVVAGGGDASAAAVG---------AGAVADG 263

Query: 343 EEAICHRMVLVCGTS---TCHMAVSRNKLFIPGVWGPF-WSAMVPKFWLTEGGQSATGAL 398
           +  +        GTS     H  V   K  +      F     +P  +L    Q   G  
Sbjct: 264 DAHLY------LGTSSWIATH--VPFPKTDVRH--RIFSLPHAIPGKYLVVAEQETAGGA 313

Query: 399 LDYIIENHV-ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFH 457
           L+++ +  +     LA+       S++E L+      +     P    L      LP  H
Sbjct: 314 LEWLKDLLLQDEDGLADEEGR---SVYERLD-----ELAASAPPGSNGLI----FLPWLH 361

Query: 458 GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL 516
           G RSP+ DP ++G    ++L+++   L     A ++G+A   R ++E      G ++  L
Sbjct: 362 GERSPVEDPNARGGFFNLSLETTRADLL---RAVLEGVALNLRWLLEAVERFLGRRLGEL 418

Query: 517 LACGGLAKNPLFLQQHADIIGCPIILPRENESV-LLGAAILGAVAAKRYSSLIEAMKAMN 575
              GG A++ L+ Q  AD++G PI    + E     GAA + AV     S   +A   + 
Sbjct: 419 RFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAGARGAAAIAAVGLGLLSF-FDAAGQLV 477

Query: 576 AAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ 607
              +   P  +P+ +  +D  + +F+EL+ + 
Sbjct: 478 RVDRTFEP--NPENRAVYDELFAVFKELYRRL 507

This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514

>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

 Score =  196 bits (500), Expect = 9e-56
 Identities = 145/574 (25%), Positives = 218/574 (37%), Gaps = 88/574 (15%)

Query: 55  SVFLGVDVGTGSARAGLFDES-GKLLGSAS-SPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
              LG+D+GT S +A LFDE  G+++ +A         +    EQ   ++W AI  A+  
Sbjct: 4   KYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQ 63

Query: 113 ACSLANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 169
               + +D + +  +G +       L+DA+G P+         R  I+W D RA ++ E+
Sbjct: 64  LLEESKIDPDAIAAIGISGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEE 114

Query: 170 INSRNSPVLQY--CGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG--- 224
           +  R      Y   G    P    PKLLW+KEN  + ++   + + + D+L YR TG   
Sbjct: 115 LEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDLFAKAAKILLIKDYLRYRLTGEFA 174

Query: 225 DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR 284
            +      T                  G  D+    WD E    +GL          +  
Sbjct: 175 TEISDASGT------------------GLLDIRTRKWDWELLAALGLP-----ERDLLPP 211

Query: 285 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENE 342
            V  PG  LG  LTP AA+ELGL  GTPV     D  A   G G ++    S S      
Sbjct: 212 VVE-PGEVLG-TLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSST----- 264

Query: 343 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 402
                       GTS    A +   L  P     +   +    W    G + TG  L   
Sbjct: 265 ------------GTSGVVRAATDKPLDDPRGSI-YTFCLGLPGWFIVMGANNTGGWLL-- 309

Query: 403 IENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSP 462
                              S  ELL   L           +         LP   G R P
Sbjct: 310 --------EWLRELFGLAESYPELLEEALAVPAPAGAIGLLF--------LPYLSGERGP 353

Query: 463 IADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGG 521
            ADP ++G   G+TL  +    A L  A ++G+A+     +E      G     +   GG
Sbjct: 354 HADPAARGGFVGLTLPHT---RAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGG 410

Query: 522 LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVI 581
            A++PL+LQ  AD +G P+++P   E+  LG A L A A        E         + I
Sbjct: 411 GARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVDARRI 470

Query: 582 HPSKDPKVKKYHDAKYLIFRELFEQQVSQRSIMA 615
            P  DP+    +   Y  +R L++  ++    ++
Sbjct: 471 IP--DPERAAAYQELYERYRALYQALLALYRQLS 502

Length = 502

>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain

 Score =  182 bits (463), Expect = 7e-54
 Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 21/213 (9%)

Query: 350 MVLVCGTSTCHMAVSRN-KLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVA 408
             +  GTS+  +  +    L + GVWGP+ +      W  EGGQSA G+LL ++++   A
Sbjct: 1   AAVSLGTSSFVLVETSEPVLSVHGVWGPYTNEG---GWGLEGGQSAAGSLLGWLLQTLRA 57

Query: 409 SRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKS 468
              L +      ++L   L                 A    +  LPDF G R+P ADP +
Sbjct: 58  REELRDAGLVESLALLLALAA--------------DAPAGGLLFLPDFSGERAPGADPHA 103

Query: 469 KGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF 528
           +G I G++  ++   LA LY A ++G+A   R I+E     G  ID ++A GG ++NPL 
Sbjct: 104 RGAITGLSSPTT---LANLYRALLEGLALALRQILEALAELGAPIDRIIASGGGSRNPLL 160

Query: 529 LQQHADIIGCPIILPRENESVLLGAAILGAVAA 561
           LQ  AD +G P+ +P   E+  LGAA+L AVAA
Sbjct: 161 LQLLADALGRPVEVPETAEATALGAALLAAVAA 193

This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. Length = 193

>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  174 bits (443), Expect = 7e-48
 Identities = 139/565 (24%), Positives = 220/565 (38%), Gaps = 102/565 (18%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSAS------SPIQIWKEGDCIEQSSTDIWHAICAAVD 111
           +G+D+GT S +A L +  G+L+  AS      SP   W E     Q   D W A+  A++
Sbjct: 3   IGIDIGTSSVKASLVNLDGELVAFASREYTTSSPHPGWSE-----QDPADWWDAVQRALE 57

Query: 112 SACSLANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 168
           +    A    E++  +G         L+D  G  +         R  I+W D R+  +  
Sbjct: 58  ALLDQAGDSAEDIAAIGVTGQMHGAVLLDQQGRVL---------RPAILWNDTRSAPEVT 108

Query: 169 KINSRNSPVL-QYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDT 227
           ++ +R    +    G   +P    PKLLW+KEN  E +  + R +   D++  R TG+  
Sbjct: 109 ELKARLGAEIFSITGNIPTPGWTLPKLLWLKENEPEVFRRIARVLLPKDYIRLRLTGE-- 166

Query: 228 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 287
             L T                +     D  +  W D+     G           I   + 
Sbjct: 167 --LATDRS-----------DASGTLLFDAASREWSDDLCALYG-----------IPEDLL 202

Query: 288 FPGHPLGS---GLTPAAAKELGLVPGTPV--GTSLIDAHAGGVGVMESVPESVSEAKENE 342
            P H        +TP AA++ GL  GTPV  G     A A G GV+            + 
Sbjct: 203 PPLHEPSEIAGAVTPEAARKTGLKAGTPVVAGAGDNAAAALGAGVV------------DP 250

Query: 343 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 402
            +A      L  GTS     VS   +  P      ++  VP  W      ++ G+ L + 
Sbjct: 251 GQAS-----LSLGTSGVVAVVSEGPVPDPKGAVITFAHAVPGRWYQVTCTNSAGSALRWA 305

Query: 403 IENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSP 462
                  R L   A   +  + EL                V      +  LP  +G R+P
Sbjct: 306 -------RDLLGPADVSYAEMAELAAQ-------------VPVGANGLLFLPYLNGERTP 345

Query: 463 IADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL 522
             DP ++G   G+TL  +   LA    A ++G+A+  R  +E  +  G     +   GG 
Sbjct: 346 YNDPNARGAFFGLTLSHTRGHLAR---AVLEGVAFSLRDCLEVLHGMGTAPQRIKLIGGG 402

Query: 523 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKA--MNAAGQV 580
           AK+ L+ Q  AD++G P+ LP   E   +GAA+L AV A  ++ L EA +        + 
Sbjct: 403 AKSELWRQILADVLGVPVELPANAEGASVGAALLAAVGAGDFADLNEAARTVRQLPVIEP 462

Query: 581 IHPSKDPKVKKYHDAKYLIFRELFE 605
             P  D +    ++  Y  +R L++
Sbjct: 463 DPP--DAEA---YERAYERYRRLYD 482

This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins

 Score =  162 bits (412), Expect = 2e-43
 Identities = 142/558 (25%), Positives = 214/558 (38%), Gaps = 95/558 (17%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD--CIEQSSTDIWHAICAAVDSA 113
             L +D GT S RA LFD  G L+     PI+ +        EQ     W A+C A    
Sbjct: 1   YVLAIDCGTQSVRALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACREL 60

Query: 114 CSLANVDGEEVKGVGFA---ATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 170
                VD   + GV       T  L+D DG P+         R  I+W+D RA +Q   +
Sbjct: 61  WEQIPVDPGRIAGVALTTQRETFVLLDKDGKPL---------RPAILWLDQRAAEQLPPL 111

Query: 171 NSRNSPVLQYCGGAVSPEMQPP--KLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTR 228
                 + +  G   + ++ P   K  W++EN  E W+   +++ LS +L+Y+ TG    
Sbjct: 112 AWWIRLLFKLIGKPETIDVIPAEAKANWIRENEPEIWAKTAKFLLLSGYLTYKLTGRFVD 171

Query: 229 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGW-DDEFWEEIGLG-------DLIDGHHA 280
           S+ + V      G+            D +   W   E  +  G         +L+     
Sbjct: 172 SVASQV------GY---------IPFDYKKRRWAKKEDLKWQGFPIEPEQLPELVP---- 212

Query: 281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID-AHAG-GVGVMESVPESVSEA 338
                   PG  +G  +T  AA+  GL  GTPV     D A    G G +E  P      
Sbjct: 213 --------PGKLIG-TITAEAAEATGLPEGTPVIAGGSDKACETLGAGALE--PGIAC-- 259

Query: 339 KENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAM---VPKFWLTEGGQSAT 395
                        L  GT T  +  + ++ F P     F+ A    +P  +  E      
Sbjct: 260 -------------LSLGT-TATVNGTSSRYFEP---DRFFPAYPAVIPGGYNPEIEIFRG 302

Query: 396 GALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPD 455
             L+ +  E           A    ++   LL+  L+          +   ++ + + P 
Sbjct: 303 YWLVSWFKEEFGQKEVQ--EAEELGIAPEALLDEALKE---------IPPGSDGLMLQPY 351

Query: 456 FHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKID 514
           +     P  DP+++G I G          A LY A ++GIAY  R  +E      G KI 
Sbjct: 352 WGPG-MPHWDPEARGAIIGF---GDVHTRAHLYRAIIEGIAYALREGLERIEKRTGVKIK 407

Query: 515 TLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM 574
            L   GG +++ L  Q  ADI G P+  P   E+  LGAAI  AV A  Y    EA+ AM
Sbjct: 408 KLRVSGGGSQSDLICQITADIFGLPVERPHTYEASGLGAAIAAAVGAGWYPDFAEAVAAM 467

Query: 575 NAAGQVIHPSKDPKVKKY 592
              G+   P  + +V+ Y
Sbjct: 468 VRVGKTFEPDPE-RVELY 484

This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488

>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  156 bits (396), Expect = 1e-41
 Identities = 122/523 (23%), Positives = 202/523 (38%), Gaps = 96/523 (18%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACS 115
            LG+D GT   +A LFD  G+ +  AS     +  +   +EQ   ++W A+ A +     
Sbjct: 2   LLGIDAGTTVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIRELLE 61

Query: 116 LANVDGEEVKGVGFAAT---CSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI-- 170
            A VD E++ G+G         LVD +G PV            I+ +D RA +  E+   
Sbjct: 62  KAGVDAEDIAGIGVTGQGDGLWLVDKEGKPV---------GPGILSLDSRAAELVERWQE 112

Query: 171 NSRNSPVLQYCGGAVSPEMQPPKLLWVKEN----LQESWSMVFRWMDLSDWLSYRATGDD 226
           +     + +  G  +        L W+KE+    L  + +++F      DW+ +R TG+ 
Sbjct: 113 DGTEDAIFELTGQGLWAGQPSSLLAWLKEHEPERLARAGTVLF----CKDWIRFRLTGE- 167

Query: 227 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 286
                T                +     D+    +DDE  + +GL ++ D          
Sbjct: 168 ---AATDPT-----------DASGSSLLDLRTGQYDDELLDLLGLEEIRD---------- 203

Query: 287 AFP----GHPLGSGLTPAAAKELGLVPGTPVGTSLID--AHAGGVGVMESVPESVSEAKE 340
             P       +   LT  AA   GL  GTPV   L D  A A G G+             
Sbjct: 204 LLPPIVDSADIVGTLTAEAAALTGLPAGTPVVGGLFDVVACALGSGL------------- 250

Query: 341 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGAL-L 399
            +E  +C     + GT + +  +S + +     +G     + P ++L E   S T A  L
Sbjct: 251 VDEGDLC----SIAGTWSINEVLSDDPVPEAEPFGY-SLYLPPGYYLVEES-SPTSASNL 304

Query: 400 DYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFH-G 458
           D+ +   +        A +   SL+ LLN  + +       P++            F   
Sbjct: 305 DWFLRTLLEDE----AAKASGGSLYALLNRLVAA-APPEYHPYL------------FEPF 347

Query: 459 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLA 518
            R    DP ++    G++   +   L     A  +G+A+  R  +E   A       +  
Sbjct: 348 LRGSNVDPNARAGFFGLSAWHTRADLVR---AVYEGVAFAHRDHLEALRAT-GLPGEIRL 403

Query: 519 CGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 561
            GG A++P++ Q  AD++G P+ +    E   LGAAI  AVA 
Sbjct: 404 TGGAARSPVWAQMFADVLGLPVEVVEGEELGALGAAIAAAVAL 446

This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447

>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase

 Score =  140 bits (354), Expect = 9e-36
 Identities = 141/560 (25%), Positives = 230/560 (41%), Gaps = 91/560 (16%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSL 116
           LG+D+GT   +A L DE G+++ S S+P  +        EQ   D W A   A+      
Sbjct: 1   LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ 60

Query: 117 ANVDGEEVKGVGFAAT---CSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
           A+  G+++KG+G +       L+DA+G  +         R  I+W D R  ++ E++ + 
Sbjct: 61  ASEMGQDIKGIGISGQMHGLVLLDANGEVL---------RPAILWNDTRTAQECEELEAE 111

Query: 174 --NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 231
             +  VL+  G    P    PKLLWV+++  E ++ + + M   D+L YR TG+      
Sbjct: 112 LGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKVMLPKDYLRYRLTGE------ 165

Query: 232 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 291
                            +  G+ D+    W  E      L D +D   +++   +     
Sbjct: 166 ---------YVTEYSDASGTGWFDVAKRAWSKE------LLDALDLPESQLPELIE-SSE 209

Query: 292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMV 351
             G  + P  A  LGL  G PV     D  AG +G     P                 M 
Sbjct: 210 KAG-TVRPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAM-------------MS 255

Query: 352 LVCGTSTCHMAVSRNKLFIP--GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVAS 409
           L  GTS    AV+   L  P   V G F  A +P  WL  G   +  + L++  E     
Sbjct: 256 L--GTSGVVYAVTDKPLPDPAGAVHG-FCHA-LPGGWLPMGVTLSATSSLEWFRE----- 306

Query: 410 RSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSK 469
                        LF   +    + + E++ P    +T     LP  +G R+P  DP+++
Sbjct: 307 -------------LFGKEDVEALNELAEQSPPGAEGVT----FLPYLNGERTPHLDPQAR 349

Query: 470 GIICGMTLDSSEKQLALLYLATVQGIAYGTR---HIVEHCNAHGHKIDTLLACGGLAKNP 526
           G   G+T +++   L     A ++G+ +  R    I+      G  I ++   GG AK+P
Sbjct: 350 GSFIGLTHNTTRADLTR---AVLEGVTFALRDSLDILREAG--GIPIQSIRLIGGGAKSP 404

Query: 527 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKD 586
            + Q  ADI G P+ +P   E   LGAAIL A A           +A+    + + P   
Sbjct: 405 AWRQMLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLP--I 462

Query: 587 PK-VKKYHDAKYLIFRELFE 605
            + V+ Y +  Y  +++L++
Sbjct: 463 AENVEAYEEL-YERYKKLYQ 481

This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481

>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases

 Score =  119 bits (300), Expect = 1e-28
 Identities = 128/516 (24%), Positives = 205/516 (39%), Gaps = 81/516 (15%)

Query: 57  FLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDC--IEQSSTDIWHAICAAVDSA 113
           +LGVD GT S +  + D E+G++L   S+P ++   G     EQ       A+  A   A
Sbjct: 2   YLGVDCGTQSTKVIVLDAETGEVLAEGSAPHEL-ISGSNGRREQQPQWWIDALVEAFRQA 60

Query: 114 CSLANVDGEEVKGVGFAATCS---LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 170
            + A +D +EV+ +G +        +DA G  +         R   +W D     +  ++
Sbjct: 61  LADAGIDPKEVRAIGVSGQQHGLVPLDAQGEVL---------RPAKLWCDTETAPENAEL 111

Query: 171 NSR---NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDT 227
             +       ++  G A        KLLW+KE+  E+++ +   +   D+L++  TG   
Sbjct: 112 IEKLGGAKAWIERLGNAPLTGYTASKLLWLKEHEPENFAKIATILLPHDYLNFWLTGR-- 169

Query: 228 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 287
               T        G A     +  G+ D+    W +E  + I          A    ++ 
Sbjct: 170 --YVTEY------GDA-----SGTGYFDVRTREWSEEVLDAIDP----ALDLADALPTLL 212

Query: 288 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 347
            P  P G+ + P AA+ LGL     V +   D   G +G     P  V+           
Sbjct: 213 SPDEPAGT-VRPEAAEALGLSGDVLVASGGGDNMMGAIGTGNVKPGVVT----------- 260

Query: 348 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHV 407
             M L  GTS    A S   +  P          V  F       S+TG  L  I   +V
Sbjct: 261 --MSL--GTSGTLYAYSDKPVVDP-------QGEVAGF------CSSTGGWLPLICTMNV 303

Query: 408 ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 467
              +   R       L  L    L ++     +P  A   E + +LP F+G R+P   P 
Sbjct: 304 TVATEQVRN------LLGLDIEELNALA--AQAPPGA---EGLTLLPFFNGERTP-NLPN 351

Query: 468 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL 527
           ++G + G+T  S+    A L  A V+G  +G R+ ++   A G K   +   GG AK+P 
Sbjct: 352 ARGSLHGLT--SANTTRANLARAAVEGATFGLRYGLDLLRALGLKSTEIRLIGGGAKSPA 409

Query: 528 FLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 563
           + Q  ADI+   +++P   E+  LGAAI  A     
Sbjct: 410 WRQIIADIMNAEVVVPDTEEAAALGAAIQAAWCLTG 445

This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 487

>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY family of carbohydrate kinases

 Score =  114 bits (288), Expect = 2e-27
 Identities = 108/516 (20%), Positives = 189/516 (36%), Gaps = 100/516 (19%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           ++ G+DVGT + +  +FD+ G ++                     ++W AI   +    +
Sbjct: 1   LYCGIDVGTTNTKVVVFDDDGTIIAIRKFKTPKNVSDGGPYFDPDELWRAIEKVI--CQA 58

Query: 116 LANVDGEEVKGV---GFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 172
           LA    + +  +       +  LVDADG P+            I W D R  ++AE++  
Sbjct: 59  LAAA-PDPIAAISITSVGESGVLVDADGEPLY---------PAIAWYDRRTEEEAEELRK 108

Query: 173 RNSPVLQY--CGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSL 230
           ++  +  Y   G    P     K+LW++E+  E W   ++W+ + D++ +R TG      
Sbjct: 109 QDPGLAIYEITGLPPDPIYSLFKILWLREHRPEVWKRAYKWLHIPDYILFRLTG------ 162

Query: 231 CTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG 290
                   +   A     +     D+ A  W +E  E  G+               A P 
Sbjct: 163 ---RPVTDF-TLA-----SRTLLFDIRAREWSEELLEMFGI------------PPDALPE 201

Query: 291 -HPLGS---GLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAI 346
             P G+    ++  AA+ LGL  GTPV     D   G        P  + ++        
Sbjct: 202 LVPSGTIIGEVSKDAAESLGLSTGTPVVLGGHDHPVGSYAAGVIDPGDILDS-------- 253

Query: 347 CHRMVLVCGTSTCHMAVSRNKL----FIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYI 402
                   GT+   +A++  KL       GV   F     P  +    G  + G  ++++
Sbjct: 254 -------MGTAEALLAIASAKLKETLTREGV--AFGVYAEPDRYYLIAGLPSGGFAIEWL 304

Query: 403 IENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSP 462
                                        E+            L       P   G+ SP
Sbjct: 305 RNIL-----------------------GGEASSKRAQEKL---LDSAALFYPYSRGSGSP 338

Query: 463 IADPKSKGIICGMTLDSSEKQLALLYLATV-QGIAYGTRHIVEHCNAHGHKIDTLLACGG 521
           I    + G   G+T  +S++ +      +V +G+ +  R  +E     G +   ++  GG
Sbjct: 339 IRSEIAGGAFYGLTDTTSQEDI----TRSVLEGLTFEARSTLECLEKLGFEGSRIVVIGG 394

Query: 522 LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 557
            ++N L+LQ  A ++G PI +  E E V LGAA+L 
Sbjct: 395 GSRNKLWLQLKASVLGKPIEVLDEAELVALGAALLA 430

This subfamily is composed of uncharacterized carbohydrate kinases. They are sequence homologous to bacterial glycerol kinase and have been classified as members of the FGGY family of carbohydrate kinases. The monomers of FGGY proteins contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 430

>gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of the FGGY family of carbohydrate kinases

 Score =  115 bits (289), Expect = 3e-27
 Identities = 134/571 (23%), Positives = 209/571 (36%), Gaps = 111/571 (19%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            L +DVGTGS RA L    G ++  A+    Q   +    EQ   D W   C  +     
Sbjct: 2   ILAIDVGTGSTRAALVRIDGAIVAFAAREHEQTVPQFGWSEQRPLDWWQGACDCIREV-- 59

Query: 116 LANVDGEEVKGVGFAATCS------LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 169
           LA V G   + +     C       L+D  G           R    +W D R   Q + 
Sbjct: 60  LARVPGAAER-IAVIGACGQMHGTVLLDDAGELT--------RDTAPLWNDKRTQPQVDA 110

Query: 170 INSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG--- 224
             +RN     L +     +P     KL W +EN  +++S + + +   D++++  TG   
Sbjct: 111 FEARNGWEKYLAHLANPPAPAWPAFKLAWWRENDPQAYSRLAKVLMPKDYINFMLTGAMA 170

Query: 225 -DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 283
            D T + C+ +                          W  +  E +GL          + 
Sbjct: 171 TDRTEASCSFLMDP-------------------ATRSWSSQACETMGL-------DVDLL 204

Query: 284 RSVAFPGHPLGSGLTPAAAKELGLVPGTPV--GTSLIDAHAGGVGVMESVPESVSEAKEN 341
             +  P   +G  +T  AA   GL  G PV  G S       G GV E  P   S++   
Sbjct: 205 PPLRLPLDIIGQ-VTQPAADLTGLPAGIPVLVGASDYAMALLGSGVCE--PGMGSDSTGT 261

Query: 342 EEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQS---ATGAL 398
               I   + LV      H  VS N     G WG F         L  GG +   A  AL
Sbjct: 262 --STI---VTLVADRPLLHPEVS-NLHTAEGAWGAF-------TLLDAGGDAVRWARRAL 308

Query: 399 LDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 458
            D    N ++   L   AA+                          A +E +  LP   G
Sbjct: 309 HD----NQLSYAQLVAEAAA------------------------APAGSEGLLFLPYLTG 340

Query: 459 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGT-RHI--VEHCNAHGHKIDT 515
            R       S+    G+    ++     L+ A ++G+A+   RH+  ++ C     + + 
Sbjct: 341 ERLG-EHRNSRAQFFGLG---AKHGRGHLHRAVLEGVAFAVWRHLRQLQKC---QGRPER 393

Query: 516 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN 575
           ++A GG A+  L+L+  A + G PI++PRE E  ++G A + AVA  R+S   +A +   
Sbjct: 394 MIASGGGARTALWLKIKASVYGLPILVPREQECGVVGCAAMAAVATGRFSDFADAARQTV 453

Query: 576 AAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 606
                I P  DP  +  +     +F  L+  
Sbjct: 454 RFADEISP--DPAWRDVYHRMQPVFDRLYRH 482

This subgroup is composed of proteobacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 493

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  114 bits (289), Expect = 4e-27
 Identities = 80/300 (26%), Positives = 123/300 (41%), Gaps = 83/300 (27%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQI------WKEGDCIEQSSTDIWHAICAA 109
            +LG+D+GT   +A L DE G+++ SAS+   +      W      EQ   D W A  AA
Sbjct: 1   YYLGIDLGTSGVKALLVDEDGEVVASASAEYPLSQPKPGWS-----EQDPEDWWEATKAA 55

Query: 110 VDSACSLANVDGEEVKGVGFA-----ATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAV 164
           +    + + + G EV+G+G +         L+D DG  +         R  I+W D R  
Sbjct: 56  IRELLAKSGIAGGEVRGIGLSGQMHGLV--LLDKDGKVL---------RPAILWNDQRTT 104

Query: 165 KQAEKINSR-NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 223
            + E+I  R    +++  G    P    PKLLW++E+  E+++ + + +   D+L YR T
Sbjct: 105 AECEEITERVGGELIEITGNPALPGFTAPKLLWLREHEPENFAKIAKVLLPKDYLRYRLT 164

Query: 224 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDM-EACG----------WDDEFWEEIGLG 272
           G+    + T                      D+ +A G          W DE  + +G+ 
Sbjct: 165 GE----IAT----------------------DVSDASGTLLLDVAKRDWSDELLDALGID 198

Query: 273 -----DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV 327
                +L +      G             LT  AA ELGL  GTPV     D  AG VG 
Sbjct: 199 RAILPELYES-SEVTGT------------LTAEAAAELGLPAGTPVVAGGGDNAAGAVGN 245

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain

 Score =  103 bits (260), Expect = 4e-25
 Identities = 63/277 (22%), Positives = 109/277 (39%), Gaps = 38/277 (13%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSAC 114
             LG+D GT S +A +F++ GK++ SAS+P   I  +    EQ   +IW A+  A+    
Sbjct: 1   YVLGIDCGTTSTKAIVFNKQGKVVASASAPYALISPKPGWAEQDPEEIWQALAQAIRKIL 60

Query: 115 SLANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 171
             + +  +++KG+G +       L+D +  P+            I+W D R  +  E + 
Sbjct: 61  QQSGISPKQIKGIGISGQGHGLVLLDKNDKPL---------YPAILWNDTRTAEIVENLK 111

Query: 172 SRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 229
                  + +  G  + P     KL W+KE+  E +    +++ + D+L +R TG     
Sbjct: 112 EEGGADKLYEITGNTIWPGFTLSKLRWLKEHEPEIFERARKFLLIHDYLRWRLTG----Q 167

Query: 230 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289
             T                +     +++   WD+E    +G+          +  S    
Sbjct: 168 FTT-----------DYSDASGTMMFNIKTLEWDEELLAILGI-PPD--LLPPLVESSEIY 213

Query: 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG 326
           G      L P  A   GL  G PV     D  A  +G
Sbjct: 214 GT-----LNPEHAALFGLDEGIPVVGGGGDNQAAALG 245

This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245

>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  102 bits (256), Expect = 3e-23
 Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 46/265 (17%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSL 116
           LGVD+GT S +A LFDE G+++   S    +    D   EQ   +I+ A+   +D    +
Sbjct: 3   LGVDIGTTSTKAVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEV--V 60

Query: 117 ANVDGEEVKGVGF-AATCSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSR 173
           A   G  +  V F +A  SL  +D DG P++          +I W D RA + AE++  R
Sbjct: 61  AKALGGRIAAVSFSSAMHSLIALDEDGEPLT---------PVITWADTRAAEYAEELKER 111

Query: 174 NSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD---DTR 228
                + Q  G  + P     KLLW+KE   E ++   +++ + +++ YR  G+   D  
Sbjct: 112 LDGRELYQRTGCPLHPMYPLAKLLWLKEERPELFAKAAKFVSIKEYVLYRLFGELVVDY- 170

Query: 229 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 288
           S+ +     T             G  ++    WD+E  E  G+         +    +  
Sbjct: 171 SIAS----GT-------------GLLNIHTLDWDEEALEIAGIS-------EEQLPELVP 206

Query: 289 PGHPLGSGLTPAAAKELGLVPGTPV 313
               L  GL    A +LGL   TP 
Sbjct: 207 TTEQLR-GLKAERAPKLGLPEDTPF 230

This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score =  101 bits (254), Expect = 9e-23
 Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 5/147 (3%)

Query: 458 GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLL 517
           G R+P  DP ++G   G+TL  +   L     A ++G+A+  R  +E     G  ID ++
Sbjct: 340 GERTPHNDPNARGAFIGLTLSHTRAHLTR---AVLEGVAFSLRDSLEILRELGVPIDRII 396

Query: 518 ACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 577
           A GG A++PL+LQ  AD++G P+   +  E   LGAAIL AV A  Y S+ EA  A+   
Sbjct: 397 AIGGGARSPLWLQIQADVLGLPVDTLKGEEGPALGAAILAAVGAGWYPSVEEAALAVPKV 456

Query: 578 GQVIHPSKDPKVKKYHDAKYLIFRELF 604
            + I P  D +    ++ +Y I+REL+
Sbjct: 457 EETIEP--DAENVAAYEERYEIYRELY 481

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 91.5 bits (228), Expect = 2e-19
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 5/148 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T  ++ +P F G  +P  DP ++G I G+T  ++   +     A ++ IA+ TR +++  
Sbjct: 336 TGGVYFVPAFSGLFAPYWDPDARGTILGLTRGTTRAHIVR---AALEAIAFQTRDVLDAM 392

Query: 507 N-AHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
               G K+  L   GGL KN L +Q  ADI+G P+  P   E+  LGAA L  +A   +S
Sbjct: 393 EKDSGIKLSVLRVDGGLTKNNLLMQFQADILGVPVERPETAETTALGAAYLAGLAVGFWS 452

Query: 566 SLIEAMKAMNAAGQVIHPSKDPKVKKYH 593
            L E ++A+  + +V  P+ D   ++  
Sbjct: 453 DLDE-LQALRKSDRVFSPTMDASEREKR 479

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score = 86.9 bits (216), Expect = 5e-18
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 504
              ++ +P F G  +P  DP ++G I G+T  +++  +A    A ++ IA+ TR ++E  
Sbjct: 336 NGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIAR---AALEAIAFQTRDVLEAM 392

Query: 505 HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRY 564
             +A G +I  L   GG+  N L +Q  ADI+G P++ P+  E+  LGAA    +A   +
Sbjct: 393 EKDA-GVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYW 451

Query: 565 SSLIEAMKAMNAAGQVIHPSKDPKVKK 591
            SL E ++A+    +   P  D + ++
Sbjct: 452 KSLEE-IEALWRVEKTFEPEMDEEERE 477

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T  +  +P F G  +P   P ++G I GMTL ++   +     A ++ IA  T  ++E  
Sbjct: 343 TGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVR---AALEAIALQTNDVIESM 399

Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
               G ++++L   GGL KN L +Q  ADI+G  I++P   E+  LGAA+L  +A   + 
Sbjct: 400 EKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWK 459

Query: 566 SLIEAMKAMNAAGQVIHPSKDPKVKK 591
           SL E  K +  +     P    + +K
Sbjct: 460 SLEEVKKLIRRSNSTFSPQMSAEERK 485

Length = 504

>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 125/541 (23%), Positives = 210/541 (38%), Gaps = 83/541 (15%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSP-IQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118
           +D GT S R  +FD  G+++  A     QI+     +E    +IW      +  A + A 
Sbjct: 5   IDQGTTSTRCIVFDHHGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGALAKAG 64

Query: 119 VDGEEVKGVGFAATCSLVDADGSPVSVSWN---GDSRRNIIVWMDHRAVKQAEKI--NSR 173
           +  E++  VG          +    +V W+   G    N IVW D R  +   ++  +  
Sbjct: 65  LTPEDIAAVGIT--------NQRETTVVWDRATGRPVYNAIVWQDTRTDEICRELAADEG 116

Query: 174 NSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRATGDDT 227
                   G  ++     PK+ W+ +N+       E   ++F  MD   WL +  TG   
Sbjct: 117 QQRFRARTGLPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMD--TWLLWNLTGGPR 174

Query: 228 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 287
             +  T    T      +         D+E   WD E     G+   +     +I  S  
Sbjct: 175 GGVHVTDV--TNASRTMLM--------DLETLDWDPELLAAFGIPRSM---LPEIRPSSE 221

Query: 288 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 347
             G            +  G++ G P+   L D  A   G          EAK N     C
Sbjct: 222 VYGT----------VRGRGILAGVPIAGVLGDQQAALFG---QTCFEAGEAK-NTYGTGC 267

Query: 348 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHV 407
             ++L  GT       S++ L +  V   F     P  +  EG  + TG+L+ ++ +N  
Sbjct: 268 F-LLLNTGTE---PVRSKHGL-LTTVAYQFGGQ--PAVYALEGSIAVTGSLVQWLRDN-- 318

Query: 408 ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 467
               L   AA       E L  T+E                 ++ +P F G  +P     
Sbjct: 319 --LGLIKTAAE-----IETLARTVED-------------NGGVYFVPAFSGLFAPYWRSD 358

Query: 468 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNP 526
           ++G+I G+T   ++  +A    A ++  A+ TR +V+  NA  G  +++L   GG+  N 
Sbjct: 359 ARGVIVGLTRYVNKGHIAR---AVLEATAFQTREVVDAMNADSGVALESLRVDGGMVANE 415

Query: 527 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKD 586
           L +Q  ADI+G P++ P+  E+  LGAA    +A   +    E +++  +  +   PS D
Sbjct: 416 LLMQFQADILGVPVVRPKVAETTALGAAYAAGLAVGFWKDTDE-LRSNWSEDKTWTPSMD 474

Query: 587 P 587
           P
Sbjct: 475 P 475

glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495

>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type

 Score = 84.6 bits (209), Expect = 4e-17
 Identities = 111/509 (21%), Positives = 203/509 (39%), Gaps = 68/509 (13%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAVDSACSL 116
           +GVD+GT S +A LF+E+GK++  +S    ++       E++  +I+ A+   +    S+
Sbjct: 3   IGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTI-REVSI 61

Query: 117 ANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNS- 175
              D +E+  V F+          S ++   N      +I W D+RAVK AE+I    + 
Sbjct: 62  NLEDEDEILFVSFST------QMHSLIAFDENWQPLTRLITWADNRAVKYAEQIKESKNG 115

Query: 176 -PVLQYCGGAVSPEMQP-PKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTT 233
             + +  G  + P M P  K++W++    + +    +++++  ++  R  G       T 
Sbjct: 116 FDIYRRTGTPIHP-MAPLSKIIWLEAEHPDIYQKAAKYLEIKGYIFQRLFGTYKIDYSTA 174

Query: 234 VCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPL 293
                          +  G  ++    WD E  E  G+    +    K+      P   +
Sbjct: 175 ---------------SATGMFNLFELDWDKEALELTGIK---ESQLPKL-----VPTTEI 211

Query: 294 GSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLV 353
              L    AK++G+   TP      D     +GV          A +  E A+       
Sbjct: 212 EENLPHEYAKKMGIQSSTPFVIGASDGVLSNLGV---------NAIKKGEAAV------T 256

Query: 354 CGTS-TCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSL 412
            GTS      + + K    G    F  A+  + W+  G  +  G +L +  +    S   
Sbjct: 257 IGTSGAIRTVIDKPKTDEKG--RIFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDSE-- 312

Query: 413 ANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGII 472
              A    +  +++L     + I  R SP    L    H  P   G R+P+ +  ++G  
Sbjct: 313 IETATRLGIDPYDVL-----TEIAARVSPGADGLL--FH--PYLAGERAPLWNANARGSF 363

Query: 473 CGMTLDSSEKQLALLYLATVQGIAYGTRHI-VEHCNAHGHKIDTLLACGGLAKNPLFLQQ 531
            G+T    ++ +     A ++G+ Y    + +      G  ++ + A GG A + ++ Q 
Sbjct: 364 FGLTYSHKKEHMI---RAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQM 420

Query: 532 HADIIGCPIILPRENESVLLGAAILGAVA 560
            +DI    I++P   ES  LGA ILG  A
Sbjct: 421 MSDIFEQEIVVPESYESSCLGACILGLKA 449

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway [Energy metabolism, Sugars]. Length = 505

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 81.4 bits (202), Expect = 3e-16
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
              ++ +P F G  +P  DP ++G I G+T  ++   +A    A ++ IAY TR ++E  
Sbjct: 334 NGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTRAHIAR---AALESIAYQTRDLLEAM 390

Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
            A  G  +  L   GG + N   +Q  ADI+G P+  P+  E+  LGAA L  +A   + 
Sbjct: 391 EADSGIPLKELRVDGGASANDFLMQFQADILGVPVERPKVTETTALGAAYLAGLAVGLWK 450

Query: 566 SLIEAMKAMNAAGQVIHPSKDPKVKKYH 593
           SL + +  +    +   PS   + ++  
Sbjct: 451 SL-DELAKLWQVDRRFEPSMSEEEREAL 477

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
              ++ +P F G  +P  D  ++G I G+T  +++  +A    AT++ IAY TR ++E  
Sbjct: 339 NGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIAR---ATLESIAYQTRDVLEAM 395

Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
               G K+  L   GG ++N   +Q  ADI+G P+  P   E+  LGAA L  +A   + 
Sbjct: 396 EKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWK 455

Query: 566 SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 602
            L E  +      +   P  D + ++     Y  +++
Sbjct: 456 DLDELAELWP-LDKEFEPGMDEEERE---ELYAGWKK 488

Length = 499

>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 70/277 (25%), Positives = 103/277 (37%), Gaps = 63/277 (22%)

Query: 57  FLGVDVGTGSARAGLFD-ESGKLLGSASSPIQ----IWKEGDCIEQSSTDIWHAICAAVD 111
           FLG D+G+ S +A L D E+GK L S S P Q    +  +    EQ     W   CAA  
Sbjct: 2   FLGYDIGSSSIKAALVDAETGKSLASVSYPEQEMEILSPQPGWAEQDPEIWWDYTCAATK 61

Query: 112 SACSLANVDGEEVKGVGFAATCS---LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 168
              +    D   ++ +G +       LVD  G+ +         R  I+W D RAV   E
Sbjct: 62  QLINQGKEDLSNIQAIGISYQMHGLVLVDKQGNVL---------RPAIIWCDSRAVSIGE 112

Query: 169 KINSRNSPVLQYCGGAVSPEMQPP------KLLWVKENLQESWSMVFRWMDLSDWLSYRA 222
           K  +       +C   +S  +  P      KL WVKEN  E +  + + M   D+++ + 
Sbjct: 113 K--AFQELGEDFC---LSHLLNSPGNFTASKLAWVKENEPEVFDRIAKIMLPGDYIAMKL 167

Query: 223 TGDDTRSLCTTVCK------WTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLID 276
           TG+    + TT         W +       + NE     +E  G D     +I       
Sbjct: 168 TGE----VTTTKSGLSEGMLWDF-------KKNEVAVELLEYLGLDRSLIPDI---VPNF 213

Query: 277 GHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 313
                +               T   A ELGL  G P+
Sbjct: 214 SEQGTV---------------TSEIAAELGLSEGIPI 235

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 490

>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 71.3 bits (175), Expect = 5e-13
 Identities = 64/275 (23%), Positives = 105/275 (38%), Gaps = 60/275 (21%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI-----WHAICAAVD 111
            L  D GTGS RA +FD +G  +  +    +     +     S D      W  +C  + 
Sbjct: 2   LLAFDAGTGSVRAVIFDLTGNQIAVSQE--EWEHLAEPRYPGSMDFDPQVNWKLVCRCIR 59

Query: 112 SACSLANVDGEEVKGVGFAATCS-----LVDADGSPVSVSWNGDSR-----RNIIVWMDH 161
            A + + +   ++  V  +AT       L D +G+ +    N D+R     R +  W   
Sbjct: 60  QALARSGIAPIDIAAV--SATSMREGIVLYDQNGNEIWACANVDARAAEEVRELKEWEPD 117

Query: 162 RAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 221
              +      S  +  L    GA+      P+LLW+K++  + +        +SDW+ Y+
Sbjct: 118 LEKEIYRS--SGQTFAL----GAL------PRLLWLKQHRPDIYEKTASVTMISDWILYK 165

Query: 222 ATGD---DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 278
            +G    +  +  TT                  G  D++   W  E  + +GL D     
Sbjct: 166 LSGVLAVEPSNAGTT------------------GLFDLKTRDWSPEMLDIVGLRD----- 202

Query: 279 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV 313
              I   V   G  +G+ +T  AA E GL  GTPV
Sbjct: 203 --DIFPPVVETGTVIGT-VTNEAASETGLAAGTPV 234

This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452

>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 127/566 (22%), Positives = 215/566 (37%), Gaps = 99/566 (17%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGS------ASSPIQIWKEGDCIEQSSTDIWHAICAA 109
           +++G+D+GT   +  L +E G+++ S       S P  +W E     Q     W A   A
Sbjct: 1   MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSE-----QDPEQWWQATDRA 55

Query: 110 VDSACSLANVDGEEVKGVGFAAT---CSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 166
           + +     ++  ++VK +G A      +L+DA    +         R  I+W D R  ++
Sbjct: 56  MKALGDQHSL--QDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQE 104

Query: 167 AEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD 226
              + +R        G  + P    PKLLWV+ +  E +  + + +   D+L  R TG+ 
Sbjct: 105 CALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEF 164

Query: 227 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 286
                           + M       + D+    W D   +      L       +    
Sbjct: 165 A---------------SDMSDAAGTMWLDVAKRDWSDVMLQAC---HLSRDQMPAL---- 202

Query: 287 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAI 346
            + G  +   L P  AK  G+    PV     D  AG VGV       + +A +      
Sbjct: 203 -YEGSEITGALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGV------GMVDANQ------ 248

Query: 347 CHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH 406
               +L  GTS  + AVS   L  P      +   +P+ W       +  + LD+     
Sbjct: 249 ---AMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDW----- 300

Query: 407 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP 466
             +  L   +     ++  L+    ++              E +  LP   G R+P  +P
Sbjct: 301 --AAKLTGLS-----NVPALIAAAQQADES----------AEPVWFLPYLSGERTPHNNP 343

Query: 467 KSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP 526
           ++KG+  G+T      +LA    A ++G+ Y     ++  +A G K  ++   GG A++ 
Sbjct: 344 QAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSE 400

Query: 527 LFLQQHADIIGCPIILPRENESV--LLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPS 584
            + Q  ADI G  +   R    V   LGAA L  +AA    SLIE +  +      +  S
Sbjct: 401 YWRQMLADISGQQLDY-RTGGDVGPALGAARLAQIAANPEKSLIELLPQLP-----LEQS 454

Query: 585 KDPKVKKYHDAKYLIFRELFEQQVSQ 610
             P  ++Y  A Y   RE F +   Q
Sbjct: 455 HLPDAQRY--AAYQPRRETFRRLYQQ 478

Length = 484

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 68.1 bits (167), Expect = 6e-12
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           + D++ +P F G  +P     ++GIICG+T  +++  +A    A ++ + + TR I+E  
Sbjct: 346 SGDVYFVPAFSGLYAPYWRKDARGIICGLTQFTTKNHIAR---AALEAVCFQTREILEAM 402

Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR-- 563
           N   G  +  L   GG+  N L +Q  ADI+G P++ P   E+  LGAA+  A AAK   
Sbjct: 403 NKDCGIPLSKLQVDGGMTSNNLLMQLQADILGIPVVRPSMPETTALGAAM-AAGAAKGVE 461

Query: 564 -YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKY 597
            +S   E + A+    +   PS   + +    AK+
Sbjct: 462 VWSLEPEDLSAVTF--ETFLPSITEEERNIRYAKW 494

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score = 67.3 bits (165), Expect = 1e-11
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 24/180 (13%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA +FD+ G ++        QI+ +   +E    +IW ++ + +  A + 
Sbjct: 4   LAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK 63

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 172
           A +  +++  +G      T  + D   G P+          N IVW D R     E++ +
Sbjct: 64  AGIKPDDIAAIGITNQRETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKA 114

Query: 173 R--NSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRATG 224
                 + +  G  + P     KL W+ +N+       E   ++F  +D   WL +  TG
Sbjct: 115 EGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTID--TWLIWNLTG 172

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 20/155 (12%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S R  +FD  G+++ S      QI+ +   +E    +IW  +   ++ A   
Sbjct: 3   LAIDQGTTSTRFIIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEALKK 62

Query: 117 ANVDGEEVKGVGFA---ATCSLVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAEKI 170
             +  E++K +G      T            V+W+ ++ +   N IVW D R  +  E++
Sbjct: 63  LRISPEQIKAIGITNQRETT-----------VAWDKETGKPLYNAIVWQDTRTSEIVEEL 111

Query: 171 NSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQE 203
            +  +     +  G  +SP     KL W+ EN+ E
Sbjct: 112 KADGNADYFREKTGLPISPYFSALKLRWLLENVPE 146

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSA 113
              L +D GT S+RA +FDE G ++  A     QI+ +   +E    +IW ++ + +  A
Sbjct: 5   KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEA 64

Query: 114 CSLANVDGEEVKGVGFA---ATCSLVD-ADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 169
            + A +   E+  +G      T  + D   G P+          N IVW D R     E+
Sbjct: 65  LAKAGIKPGEIAAIGITNQRETTVVWDKETGKPIY---------NAIVWQDRRTADICEE 115

Query: 170 INSR 173
           + + 
Sbjct: 116 LKAD 119

Length = 499

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score = 64.8 bits (159), Expect = 5e-11
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
            + ++V+P F G  +P  D  ++G I G+T  ++++ +     AT++ IAY TR +++  
Sbjct: 340 NDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIR---ATLESIAYQTRDVLDAM 396

Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
            A  G ++  L   GG   N   +Q  ADI+G P+  P   E+  LGAA L  +A   + 
Sbjct: 397 QADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWK 456

Query: 566 SLIEAMKAMNAAGQVIHPSKDPKVKK 591
            L E +K      +   P  D + ++
Sbjct: 457 DLDE-LKEQWKIDRRFEPQMDEEERE 481

Length = 498

>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional

 Score = 65.0 bits (159), Expect = 5e-11
 Identities = 74/304 (24%), Positives = 110/304 (36%), Gaps = 76/304 (25%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-----------EGDCIEQSSTD 101
           S S  + +D GTGS RA +FD +G  +         W+           E D  +     
Sbjct: 1   SMSYLMALDAGTGSIRAVIFDLNGNQIAVGQ---AEWRHLAVPDVPGSMEFDLEKN---- 53

Query: 102 IWHAICAAVDSACSLANVDGEEVKGVGFAATCS------LVDADGSPVSVSWNGDSRRNI 155
            W   C  +  A   A +   ++  V   +  S      L D +G+ +    N D+R + 
Sbjct: 54  -WQLACQCIRQALQKAGIPASDIAAV---SATSMREGIVLYDRNGTEIWACANVDARASR 109

Query: 156 IVWMDHRAVKQAEKINSRNSPVLQYCG-----GAVSPEMQPPKLLWVKENLQESWSMVFR 210
            V      +K  E  N+    V +  G     GA+      P+LLW+  +  + +     
Sbjct: 110 EV----SELK--ELHNNFEEEVYRCSGQTLALGAL------PRLLWLAHHRPDIYRQAHT 157

Query: 211 WMDLSDWLSYRATGD---DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWE 267
              +SDW++Y  +G+   D  +  TT                  G  D+    WD    E
Sbjct: 158 ITMISDWIAYMLSGELAVDPSNAGTT------------------GLLDLVTRDWDPALLE 199

Query: 268 EIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GV 325
             GL          I   V   G  LG  +T  AA E GL  GTPV     D   G  G+
Sbjct: 200 MAGLRA-------DILPPVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL 251

Query: 326 GVME 329
           GV+ 
Sbjct: 252 GVVR 255

Length = 520

>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 4/141 (2%)

Query: 454 PDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK 512
             F G  +P  D  ++G I G+T  +++  +A    A ++ + + TR I++  +   G  
Sbjct: 353 TAFSGLFAPYWDDDARGTIFGITQYTTKSHIAR---AALEAVCFQTRAILDAMSKDSGSP 409

Query: 513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMK 572
           +  L   GG++ + + +Q  ADI+G P+  P   ES  LGAAI    A   +   +    
Sbjct: 410 LKALAVDGGMSNSDVAMQIQADILGIPVERPEMRESTALGAAIAAGFAVGLFGWDLTLKD 469

Query: 573 AMNAAGQVIHPSKDPKVKKYH 593
                  V  P  D + +   
Sbjct: 470 INTEGNTVFKPKTDDEERAKM 490

This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496

>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 433 SMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATV 492
           +MI E  +  +    + + +  D    +             G+TL+++       Y A +
Sbjct: 322 TMIEEARA--IPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHF---YRAAL 368

Query: 493 QGIAYGTRHIVEHCNAHGH-KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLL 551
           +G+    +  ++     GH K   LL  GG ++N L+ Q  A+++  PI +  + E+ + 
Sbjct: 369 EGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVA 428

Query: 552 GAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP 587
           GAA+ G      +SS  +A   M    +  +P  +P
Sbjct: 429 GAAMFGWYGVGEFSSPEQARAQMKYQYRYFYPQTEP 464

Length = 470

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQL--ALLYLATVQGIAYGTRHIVE 504
           +E ++ +P F G + PI DP++     G+   ++++ L  ALL     + IA+  + + E
Sbjct: 349 SEGVYFIPAFSGLQPPINDPRACAGFIGLKPSTTKEHLVRALL-----ESIAFRIKQLYE 403

Query: 505 HCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 563
                 G  I  +   GG++ N    Q  AD+ G P+      E   LGAA L  +A   
Sbjct: 404 TIKKETGQPIKKIRVDGGVSNNDFICQLLADLTGLPVERADSTEMSALGAAYLAGLAVGL 463

Query: 564 YSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK 596
           + +  E  K +    ++  P  + + K     K
Sbjct: 464 WKNKEELKK-LRKVEKIFEPKPNIRKKYLPIMK 495

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 444 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIV 503
           A+    ++ +P   G  +P  D  ++G+I G+TL +    LA    A ++ IA+    + 
Sbjct: 328 ASDNGGVYFVPALTGLGAPWWDRDARGLISGLTLGTGRAHLAR---AALESIAFQIADVF 384

Query: 504 EHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 561
           E      G  ++ L   GG  +N   +Q  AD++G P+I     E   LGAA+L   A 
Sbjct: 385 EAMQQAAGGPLERLSVDGGATRNRFLMQLQADLLGRPVIRSDTPEVSALGAALLAGKAL 443

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 40/196 (20%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +DVGT + R  ++D   +++GS+   I+ ++ E   +E     +W  I   +  A   
Sbjct: 3   LALDVGTTTIRCFIYDRQAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEAVKD 62

Query: 117 ANVDGEEVKGVGFAAT-CSLVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAEKINS 172
           AN+  +++ G+G +    S          ++WN  + +   N I W D RA +  ++ N+
Sbjct: 63  ANLTAKQIAGLGISTQRGSF---------LTWNKSTGKPYHNFITWKDLRADELVKEWNN 113

Query: 173 R--------NSPVL-------QYCGGAV---SPEMQPPKLLWVKEN------LQESWSMV 208
                     S VL       ++   +V     +    +LLWV +N        +  +++
Sbjct: 114 SLLMKAIRVASKVLHLLTRSKRFLAASVLKFMNQHVTLRLLWVLQNNPELKKALKEGNVL 173

Query: 209 FRWMDLSDWLSYRATG 224
           F  +D   WL Y+ TG
Sbjct: 174 FGTID--TWLLYKLTG 187

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 54.4 bits (132), Expect = 1e-07
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 14/110 (12%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA LFD  G ++  A     QI+ +   +E    +IW +  A    A + 
Sbjct: 3   LAIDQGTTSSRAILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREALAK 62

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHR 162
           A +   ++  +G      T  + D + G PV          N IVW D R
Sbjct: 63  AGIRASDIAAIGITNQRETTVVWDRETGKPVY---------NAIVWQDRR 103

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 68/278 (24%), Positives = 102/278 (36%), Gaps = 62/278 (22%)

Query: 54  RSVFLGVDVGTGSARAGLFDESGKLLGSASSP--IQIWKEGDCIEQSSTD-IWH--AICA 108
           + V L +D G  + RA   D  GK++  AS+P    I  E     Q S D I    A C 
Sbjct: 1   QDVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCC 60

Query: 109 AVDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 168
                   + +    ++G+    T +    DG+ V     G+    II W   R     E
Sbjct: 61  RQ----INSELTECHIRGI----TVTTFGVDGALVDK--QGNLLYPIISWKCPRTAAVME 110

Query: 169 KINS--------RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSY 220
            I          + S V  +    +       KL+W+KEN  +       W+ +S  +++
Sbjct: 111 NIERYISAQQLQQISGVGAFSFNTLY------KLVWLKENHPQLLEQAHAWLFISSLINH 164

Query: 221 RATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA 280
           R TG+ T          T +  A   QM      D++   +  E  +  GL         
Sbjct: 165 RLTGEFT----------TDITMAGTSQML-----DIQQRDFSPEILQATGL--------- 200

Query: 281 KIGRSVAFP-----GHPLGSGLTPAAAKELGLVPGTPV 313
                  FP     G  +G+ L P+AA  LGL  G PV
Sbjct: 201 ---SRRLFPRLVEAGEQIGT-LQPSAAALLGLPVGIPV 234

Length = 470

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 454 PDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHK 512
           P F G  +P     +K  I GMT  + + +L     A ++ IAY    +++      G +
Sbjct: 342 PAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVR---AALESIAYQINDVIDAMEEDSGIE 398

Query: 513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMK 572
           I  L   GG  +N   +Q  ADI+  P+ +    E   LGAA    +A   Y+      K
Sbjct: 399 ISELRVDGGPTRNRYLMQFQADILNAPVKVSNIEELSALGAAYAAGLALGLYNQEFLEAK 458

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 64/276 (23%), Positives = 104/276 (37%), Gaps = 47/276 (17%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD-CIEQSSTDIWHAICAAVDSACSL 116
           L +D GT +A+A L D  G ++ S S+P+ I       +EQ +  IW A+  A+ + C L
Sbjct: 3   LAIDEGTTNAKAVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQQAI-ADC-L 60

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVS--VSWNGDSRRNIIVWMDHRAVKQAEKI 170
           A V   EV  +  +    +  + D   G+P+   +SW    RR        RA      +
Sbjct: 61  AGVLAAEVAAIAISNQRESVVIWDRQTGAPLGPVLSWQ--CRRTAAACAALRAEGHEPMV 118

Query: 171 NSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMV----FRWMDLSDWLSYRATGDD 226
            +R        G  + P     K+ W+ + + +  +           +  WL +  TG  
Sbjct: 119 AART-------GLPIDPMFSASKMRWLLDRVDDGPARAAQGRLCLGTVDSWLLWNLTGGA 171

Query: 227 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 286
             +        T   +A   Q+      D+    WD +      L DL       I R+ 
Sbjct: 172 VFA--------TDASNAARTQL-----LDLHGGQWDPQ------LLDLFG-----IPRA- 206

Query: 287 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHA 322
           A P     +G         GL  G P+   + D+HA
Sbjct: 207 ALPDVLASAGDFGHTRGLGGLPDGVPILAMIGDSHA 242

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 9/151 (5%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 504
           T  ++ +P F G  +P     ++G+  G+T  +++  +A    A ++ + +  + +++  
Sbjct: 344 TGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIAR---AVLESMCFQVKDVLDAM 400

Query: 505 ----HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVA 560
                       +  L   GG   N L +Q  AD++G P++ P + E+  LGAA    +A
Sbjct: 401 RKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLA 460

Query: 561 AKRYSSLIEAMKAMNAAGQVIHPSKDPKVKK 591
              ++                 P  D + + 
Sbjct: 461 VGLWTEEEIFASEKWKNTTTFRPKLDEEERA 491

Length = 512

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 24/183 (13%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            L +D  T   +A LFDE G+LL  A     QI+ E   +E    +I+     AV     
Sbjct: 2   ILAIDQSTQGTKALLFDEKGELLARADKSHRQIYPENGWVEHDPEEIYENTLQAVKDLLE 61

Query: 116 LANVDGEEVKGVGFA----ATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI- 170
              +D  E++G+G       T +     G P+          N IVW   R     E++ 
Sbjct: 62  EFGIDPAEIEGLGITNQRETTVAWDKRTGKPLY---------NAIVWQCQRGKAICERLK 112

Query: 171 -NSRNSPVLQYCGGAVSPEMQPPKLLWVKEN------LQESWSMVFRWMDLSDWLSYRAT 223
                  + Q  G  + P     K+ W+ EN            + F  +D   WL Y+ T
Sbjct: 113 EEGYAELIKQKTGLKIDPYFSASKMAWLLENVEGVREAASKGDLAFGTID--SWLIYKLT 170

Query: 224 GDD 226
              
Sbjct: 171 NGK 173

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 424 FELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQ 483
           FE L          R   FV AL+          G   P  D  + G+  GM+L ++ + 
Sbjct: 306 FEELAAFPAPPAIARGLAFVPALS----------GLACPHWDRSAAGLWLGMSLATTRQD 355

Query: 484 LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP 543
           +     A ++G+A  +  ++   +      D L   GGL +NP F Q  AD++   I+ P
Sbjct: 356 MCQ---ALLEGVAMRSAEVIYAMDGVRPVGDRLSIDGGLTRNPYFCQFLADVLQREIVTP 412

Query: 544 RENESVLLGAAILGAVAA 561
             +E   LG A L A   
Sbjct: 413 SFDELTALGCAALAARGL 430

This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470

>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 502 IVEHCNAH------GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAI 555
           IV  CN        G    +L+  GG +K  L+ Q  AD+ G P+ +P   E+  LG AI
Sbjct: 393 IVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAI 452

Query: 556 LGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK 596
              V A  YSSL E  + +    +   P+ +   + Y +AK
Sbjct: 453 AAGVGAGIYSSLAETGERLVRWERTFEPNPENH-ELYQEAK 492

Length = 520

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 28/183 (15%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118
           +D GT S R  ++D   + + S      QI+ +   +E    +I  ++   +  A   A 
Sbjct: 5   IDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64

Query: 119 VDGEEV----KGVGFAATCSLVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAEKIN 171
             G  V    K +G          +    +V+W+  + R   N IVWMD R      ++ 
Sbjct: 65  AKGHNVDSGLKAIGIT--------NQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLE 116

Query: 172 SR----NSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYR 221
                     ++ CG  +S      KLLW+ EN+       +S   +F  +D   WL + 
Sbjct: 117 KELSGGRKHFVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTID--SWLIWN 174

Query: 222 ATG 224
            TG
Sbjct: 175 LTG 177

Length = 512

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 28/183 (15%)

Query: 60  VDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118
           +D GT S R  ++D + K++ S      QI+ +   +E    +I   +   ++ A + A 
Sbjct: 5   IDQGTTSTRFIIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGALAKAK 64

Query: 119 VDGEEV----KGVGFAATCSLVDADGSPVSVSWN---GDSRRNIIVWMDHRA---VKQAE 168
             G +V    K +G          +    +V W+   G    N IVWMD R     ++ E
Sbjct: 65  AKGLDVLDGLKAIGIT--------NQRETTVVWSRSTGLPLYNAIVWMDARTSSICRRLE 116

Query: 169 K-INSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYR 221
           K +       ++ CG  +S      KLLW+ E++       +S   +F  +D   WL + 
Sbjct: 117 KELPEGGRHFVETCGLPISTYFSATKLLWLMEHVDEVKAAVKSGDALFGTID--TWLIWN 174

Query: 222 ATG 224
            TG
Sbjct: 175 LTG 177

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 46/269 (17%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIW--HAICAAVDS 112
            V L +D G  + RA   +  GK++ SAS+P    K+   IE +   IW   AI   +  
Sbjct: 1   EVILVLDCGATNLRAIAINRQGKIVASASTPNAT-KQA--IENNDYHIWDLEAIWQKLAD 57

Query: 113 ACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 172
            C   N +  E    G A T   VD  G+P      G+    II W   R     + I  
Sbjct: 58  CCQQINSELTEKHIRGIAVTTFGVD--GAPFDK--QGNQLYPIISWKCPRTAPVMDNIER 113

Query: 173 --------RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG 224
                     + +  Y    +       KL+W+KE+  + +  + +++ +S  +++R TG
Sbjct: 114 LLDAQRLYAINGIGAYSFNTLY------KLVWLKEHHPQLFERMHKFVFISSMITHRLTG 167

Query: 225 DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR 284
           + T          T  G + M         D+    W  +  + +GL         ++  
Sbjct: 168 EFTTD-------ITMAGTSMMT--------DLTQRNWSPQILQALGLSR-------RLFP 205

Query: 285 SVAFPGHPLGSGLTPAAAKELGLVPGTPV 313
            +   G  +G+    AAA  LGL  G PV
Sbjct: 206 PLVEAGEQIGTLQNSAAAM-LGLPVGVPV 233

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465

>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 67/275 (24%), Positives = 106/275 (38%), Gaps = 60/275 (21%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIW--HAICAAVDSA 113
           V L +D G  + RA   +E G+++ SAS P    K+G  IE +   IW    I   +   
Sbjct: 1   VVLVLDCGATNVRAIAVNEQGQIVASASLPNAT-KQG--IENNDYHIWDFDEIWQKLVEC 57

Query: 114 CS--LANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAV---KQAE 168
            +  L+ ++ +++  +    T +    DG+PV     G+    II W   R     K  E
Sbjct: 58  ATQVLSQLNAKQIVAI----TVTTFGVDGAPVDK--QGNQLYPIISWKCPRTAPVMKNIE 111

Query: 169 KINS-----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRAT 223
                    + + V  Y    +       KL+W+KEN  +    + +++ +S  L++R T
Sbjct: 112 NEIDRLSLYQINGVGAYSFNTLY------KLVWLKENHPQLLEKMHKFVFISSMLTHRLT 165

Query: 224 GDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 283
           G+ T          T    A    M      D+ +  W       +GL            
Sbjct: 166 GEFT----------TDRTMAGTSMMT-----DLTSGNWSPSILAYLGLS---REL----- 202

Query: 284 RSVAFP-----GHPLGSGLTPAAAKELGLVPGTPV 313
               FP     G  +G  LT  AA+ LGL  G PV
Sbjct: 203 ----FPPLVDAGEKIGL-LTTEAAQLLGLPAGIPV 232

This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 35/191 (18%)

Query: 54  RSVFLGVDVGTGSARAGLFDESGKLLGSASS------PIQIWKEGDCIEQSSTDIWHAIC 107
                 +D GT S R  +FDE G ++ S         P   W E D  E     I   + 
Sbjct: 1   MKYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEE-----ILRNVY 55

Query: 108 AAVDSACSLA--NVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRR---NIIVWMDHR 162
             ++ A           ++K +G       V        V+W+  + +   N IVW+D R
Sbjct: 56  KCMNEAIKKLREKGPSFKIKAIGITNQRETV--------VAWDKVTGKPLYNAIVWLDTR 107

Query: 163 A---VKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQE------SWSMVFRWMD 213
               V +  K    ++   +  G  +S      K+ W+ EN+          +++F  +D
Sbjct: 108 TYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTID 167

Query: 214 LSDWLSYRATG 224
              WL +  TG
Sbjct: 168 --TWLIWNLTG 176

Length = 504

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 23/158 (14%)

Query: 60  VDVGTGSARAGLFD-ESGKLLGSASSPI-QIW-KEGDCIEQSSTDIWHAICAAVDSACS- 115
           +D GT S R  +F+ ++ +LL S    I QI+ KEG   EQ   +I +++   ++  C  
Sbjct: 6   IDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWV-EQDPKEILNSVYECIEKTCKK 64

Query: 116 --LANVDGEEVKGVGFAATCSLVDADGSPVSVSWN---GDSRRNIIVWMDHRAVKQAEKI 170
               N+D  ++K +G          +    +V W+   G+   N IVW+D R     +K+
Sbjct: 65  LKELNIDVSDIKAIGIT--------NQRETTVVWDKYTGEPLYNAIVWLDIRTQSTVDKL 116

Query: 171 NSRNSP-----VLQYCGGAVSPEMQPPKLLWVKENLQE 203
            ++        +   CG  +S      KL W+ +N+ E
Sbjct: 117 LAKIPDKNKNYLKSICGLPISTYFSAVKLRWLLDNVPE 154

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 459 NRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH-KIDTLL 517
           N         +G I G+TL+++   +   Y A ++G+    +  ++     G  K   LL
Sbjct: 342 NFQCDLLSCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELL 398

Query: 518 ACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 577
             GG +KN L+ Q  A+++  P+ +  + E+ + GAA+ G      Y+S  EA   M+  
Sbjct: 399 LVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQ 458

Query: 578 GQVIHPS 584
            +  +P 
Sbjct: 459 YRYFYPQ 465

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon [Energy metabolism, Sugars]. Length = 465

>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 507 NAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL 556
           +  G + D L+  GG +K+ L+ Q  AD+ G P+++P   E+  LGAAI 
Sbjct: 401 DFTGFEPDYLVFAGGASKSKLWSQILADVTGKPVVVPVVKEATALGAAIA 450

This subfamily is composed of bacterial autoinducer-2 (AI-2) kinases and similar proteins. AI-2 is a small chemical quorum-sensing signal involved in interspecies communication in bacteria. Cytoplasmic autoinducer-2 kinase, encoded by the lsrK gene from Salmonella enterica serovar Typhimurium lsr (luxS regulated) operon, is the prototypical member of this subfamily. AI-2 kinase catalyzes the phosphorylation of intracellular AI-2 to phospho-AI-2, which leads to the inactivation of lsrR, the repressor of the lsr operon. Members of this family are homologs of glycerol kinase-like proteins and belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 452

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 11/122 (9%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T  ++ +P F+G  +P     ++G+  G+T  +++  +A    A ++ + +  + ++   
Sbjct: 346 TGGVYFVPAFNGLFAPWWRDDARGVCIGITRYTNKAHIAR---AVLESMCFQVKEVLTSM 402

Query: 507 NAHGHKIDT--------LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 558
            A    I+         L   GG   N L +Q  AD++G P++ P + E+  LGAA    
Sbjct: 403 KADAGNIEANTVGGEFLLRVDGGATVNNLLMQIQADLMGSPVVRPVDIETTALGAAYAAG 462

Query: 559 VA 560
           +A
Sbjct: 463 LA 464

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 28/125 (22%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QI-----WKEGDCIEQSSTDIWHAICAAVD 111
           L +D GT S+RA +FD  G ++  A     QI     W E D  E     IW +  + + 
Sbjct: 8   LALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNE-----IWASQLSVIA 62

Query: 112 SACSLANVDGEEVKGVGFA---ATCSLVDADGSPVSVSWNGDSRR---NIIVWMDHRAVK 165
            A + A +  +++  +G      T           +V W+ ++ R   N IVW D R   
Sbjct: 63  EALAKAGISPDQIAAIGITNQRET-----------TVVWDKETGRPIYNAIVWQDRRTAD 111

Query: 166 QAEKI 170
             E++
Sbjct: 112 ICEEL 116

Length = 498

>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 12/135 (8%)

Query: 434 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQ 493
           MI E       A  + ++  PDF      +      G I G++L ++   +   Y A ++
Sbjct: 325 MIEEAEKAGPGA--DGVNFEPDF------LQLGDGNGSIEGLSLHTTRGHI---YRAALE 373

Query: 494 GIAYGTRHIVEHCNAHGH-KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLG 552
           G+    +  +++    G  K   L+  GG +KN L+ Q  AD +  P+ +  + ES +LG
Sbjct: 374 GLTNQLKRNLDYLEQVGQFKAKPLILVGGGSKNTLWNQIRADALQIPLKVVDQAESTVLG 433

Query: 553 AAILGAVAAKRYSSL 567
           AA+        Y+S 
Sbjct: 434 AAMFAFAGVGIYNSP 448

This subfamily is composed of bacterial L-fuculose kinases (FK, also known as fuculokinase, EC 2.7.1.51), which catalyze the ATP-dependent phosphorylation of L-fuculose to produce L-fuculose-1-phosphate and ADP. The presence of Mg2+ or Mn2+ is required for enzymatic activity. FKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	619
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	100.0
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	100.0
PRK15027	484	xylulokinase; Provisional	100.0
PRK04123	548	ribulokinase; Provisional	100.0
PRK00047	498	glpK glycerol kinase; Provisional	100.0
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	100.0
COG0554	499	GlpK Glycerol kinase [Energy production and conver	100.0
PLN02295	512	glycerol kinase	100.0
PTZ00294	504	glycerol kinase-like protein; Provisional	100.0
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	100.0
COG1069	544	AraB Ribulose kinase [Energy production and conver	100.0
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	100.0
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	100.0
PRK10331	470	L-fuculokinase; Provisional	100.0
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	100.0
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	100.0
PLN02669	556	xylulokinase	100.0
KOG2517	516	consensus Ribulose kinase and related carbohydrate	100.0
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	100.0
PRK10640	471	rhaB rhamnulokinase; Provisional	100.0
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	100.0
KOG2531	545	consensus Sugar (pentulose and hexulose) kinases [	100.0
PF02782	198	FGGY_C: FGGY family of carbohydrate kinases, C-ter	99.98
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	99.24
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	98.63
PRK09698	302	D-allose kinase; Provisional	98.01
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	98.0
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	97.94
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	97.93
PF00480	179	ROK: ROK family; InterPro: IPR000600 A family of b	97.82
PRK09557	301	fructokinase; Reviewed	97.81
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	97.81
PRK13317	277	pantothenate kinase; Provisional	97.6
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	97.3
PRK05082	291	N-acetylmannosamine kinase; Provisional	97.26
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	97.15
PRK00292	316	glk glucokinase; Provisional	97.15
COG2971	301	Predicted N-acetylglucosamine kinase [Carbohydrate	97.11
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	97.05
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	97.03
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.99
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	96.83
PRK13410	668	molecular chaperone DnaK; Provisional	96.83
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	96.83
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	96.82
CHL00094	621	dnaK heat shock protein 70	96.8
PF05378	176	Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r	96.7
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	96.69
PF14574	412	DUF4445: Domain of unknown function (DUF4445); PDB	96.61
PRK13321	256	pantothenate kinase; Reviewed	96.61
PRK12408	336	glucokinase; Provisional	96.59
PRK13318	258	pantothenate kinase; Reviewed	96.58
PRK14101	638	bifunctional glucokinase/RpiR family transcription	96.56
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	96.55
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	96.54
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	96.48
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	96.45
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	96.45
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	96.25
PRK05183	616	hscA chaperone protein HscA; Provisional	96.23
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	96.22
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	96.19
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	96.16
PRK01433	595	hscA chaperone protein HscA; Provisional	96.12
PTZ00400	663	DnaK-type molecular chaperone; Provisional	95.9
PRK13928	336	rod shape-determining protein Mbl; Provisional	95.81
PLN03184	673	chloroplast Hsp70; Provisional	95.69
PTZ00009	653	heat shock 70 kDa protein; Provisional	95.54
PRK11678	450	putative chaperone; Provisional	95.39
PRK13411	653	molecular chaperone DnaK; Provisional	95.26
PRK13927	334	rod shape-determining protein MreB; Provisional	94.95
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	94.89
PRK09472	420	ftsA cell division protein FtsA; Reviewed	94.85
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	94.46
PRK13930	335	rod shape-determining protein MreB; Provisional	94.35
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	94.16
TIGR00904	333	mreB cell shape determining protein, MreB/Mrl fami	94.01
KOG1794	336	consensus N-Acetylglucosamine kinase [Carbohydrate	93.92
KOG0103	727	consensus Molecular chaperones HSP105/HSP110/SSE1,	93.59
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	93.56
PRK09585	365	anmK anhydro-N-acetylmuramic acid kinase; Reviewed	93.39
PLN02920	398	pantothenate kinase 1	93.35
PRK13929	335	rod-share determining protein MreBH; Provisional	93.12
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	92.99
PF03702	364	UPF0075: Uncharacterised protein family (UPF0075);	92.84
PRK13317	277	pantothenate kinase; Provisional	92.66
PRK09472	420	ftsA cell division protein FtsA; Reviewed	92.41
KOG0100	663	consensus Molecular chaperones GRP78/BiP/KAR2, HSP	91.89
TIGR00749	316	glk glucokinase, proteobacterial type. This model	91.69
PF02543	360	CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036	91.52
PLN02914	490	hexokinase	91.46
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	91.41
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	91.27
PF13941	457	MutL: MutL protein	91.22
COG2192	555	Predicted carbamoyl transferase, NodU family [Post	91.11
PLN02405	497	hexokinase	91.08
PF03630	341	Fumble: Fumble ; InterPro: IPR004567 Pantothenate	90.71
PLN02596	490	hexokinase-like	90.7
PTZ00288	405	glucokinase 1; Provisional	90.67
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	90.45
PLN02362	509	hexokinase	90.13
COG2377	371	Predicted molecular chaperone distantly related to	89.9
COG0533	342	QRI7 Metal-dependent proteases with possible chape	89.18
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	89.15
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	88.97
PF06723	326	MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba	88.84
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	88.52
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	88.23
PRK14878	323	UGMP family protein; Provisional	88.19
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	88.16
PTZ00107	464	hexokinase; Provisional	88.08
TIGR03281	326	methan_mark_12 putative methanogenesis marker prot	87.85
PRK13324	258	pantothenate kinase; Reviewed	87.67
PRK13331	251	pantothenate kinase; Reviewed	87.49
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	87.11
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	86.95
PRK09604	332	UGMP family protein; Validated	86.78
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	86.76
PRK13326	262	pantothenate kinase; Reviewed	86.06
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	85.7
COG3426	358	Butyrate kinase [Energy production and conversion]	85.7
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	85.66
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	85.54
COG3734	306	DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate	84.65
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	83.6
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	83.48
KOG0101	620	consensus Molecular chaperones HSP70/HSC70, HSP70	83.45
PRK09605	535	bifunctional UGMP family protein/serine/threonine	83.24
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	83.14
PRK09604	332	UGMP family protein; Validated	83.0
PTZ00297	1452	pantothenate kinase; Provisional	82.56
TIGR00671	243	baf pantothenate kinase, type III. This model desc	82.28
COG3894	614	Uncharacterized metal-binding protein [General fun	82.27
TIGR03723	314	bact_gcp putative glycoprotease GCP. This model re	82.05
PRK03011	358	butyrate kinase; Provisional	81.66
COG4020	332	Uncharacterized protein conserved in archaea [Func	81.64
COG0145	674	HyuA N-methylhydantoinase A/acetone carboxylase, b	81.04
PLN02666	1275	5-oxoprolinase	80.97
PLN02902	876	pantothenate kinase	80.8
KOG0102	640	consensus Molecular chaperones mortalin/PBP74/GRP7	80.74
TIGR03722	322	arch_KAE1 universal archaeal protein Kae1. This fa	80.72
PRK13320	244	pantothenate kinase; Reviewed	80.51

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=100.00  E-value=8.8e-91  Score=773.91  Aligned_cols=529  Identities=45%  Similarity=0.774  Sum_probs=439.2

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      ++||||+|||++|++|||.+|+++++.+.+++.. +.+||.||||++||+++++++++++++.+.+..+|++|||++|++
T Consensus         1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~s   80 (541)
T TIGR01315         1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDATCS   80 (541)
T ss_pred             CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccccc
Confidence            3799999999999999999999999999888764 488999999999999999999999998776677899999999865


Q ss_pred             c--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccceee
Q 007076          135 L--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM  212 (619)
Q Consensus       135 ~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~  212 (619)
                      +  +|++|+|+....++++.+|+|+|+|.|+.++++++++...+++++||+++++.++++||+|+++|+||+|+++.+|+
T Consensus        81 ~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l  160 (541)
T TIGR01315        81 LVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFF  160 (541)
T ss_pred             ceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhc
Confidence            4  49999999554445555799999999999999999765457889999999999999999999999999999999999


Q ss_pred             echhHHHhhhcCCcccccccccccccccccchhhccccccccC---CcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076          213 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRD---MEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  289 (619)
Q Consensus       213 ~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d---~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~  289 (619)
                      +++|||.|+|||+...+..+               ++.+++||   +++++||+++|+.+||++....+||++.|+++++
T Consensus       161 ~~~dyl~~~LTG~~~~d~~~---------------as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~  225 (541)
T TIGR01315       161 DLTDFLTWRATGKEIRSFCS---------------VVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSP  225 (541)
T ss_pred             chhhhheeeeecchhHhHhH---------------HhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCC
Confidence            99999999999987533222               12334555   7999999999999999952111234444479999


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcc--cCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccc
Q 007076          290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK  367 (619)
Q Consensus       290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g--~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~  367 (619)
                      ++++|+.|++++|+++||++||||++|++|++|+++|+++  ..++|   ..++    ..+++.+++|||+++..+.+.+
T Consensus       226 ~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g---~~~~----~~~~~~~~~GTs~~~~~~~~~~  298 (541)
T TIGR01315       226 GELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENG---DVSQ----AFTRLAAVAGTSTCHMAMTKGP  298 (541)
T ss_pred             CcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccc---cccC----CCCcEEEEecCceEEEEecCCC
Confidence            9999933999999999999999999999999999999844  23332   0000    0237889999999988888776


Q ss_pred             cccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCC--CccC
Q 007076          368 LFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP--FVAA  445 (619)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p--~~~~  445 (619)
                      ..+++.+.+++++..++.|+++++++++|.+++||++++....+........+.+.|+.|++.+++++..  +|  .+|+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~  376 (541)
T TIGR01315       299 VFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAK--TNAPSISY  376 (541)
T ss_pred             ccCCceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhh--cccCcccc
Confidence            6666554433234567889999999999999999998763211111111112345687777765544321  11  0113


Q ss_pred             CCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCC
Q 007076          446 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN  525 (619)
Q Consensus       446 g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s  525 (619)
                      +++|++|+|||.|+|+|+|||++||+|+||+.+|++.++.+++||++|||||.+|++++.|++.+.++++|+++||++||
T Consensus       377 ~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s  456 (541)
T TIGR01315       377 LVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQN  456 (541)
T ss_pred             CCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccC
Confidence            46899999999999999999999999999999999977777889999999999999999999888889999999999999


Q ss_pred             HHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhH-HHHHHHHHHHHHHH
Q 007076          526 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK-KYHDAKYLIFRELF  604 (619)
Q Consensus       526 ~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~-~~y~~~y~~y~~l~  604 (619)
                      ++|+||+|||+|+||+++...|++++|||++|++++|.|++++++.+.+.+..++|+|  +++++ +.|+++|++|+++|
T Consensus       457 ~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~~Y~~~y~~y~~l~  534 (541)
T TIGR01315       457 PLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWP--RGDPAKKLHDRKYEIFLQLA  534 (541)
T ss_pred             HHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccCCcEEcC--CcchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988888788889999  99999 99999999999999


Q ss_pred             HHHHHH
Q 007076          605 EQQVSQ  610 (619)
Q Consensus       605 ~~~~~~  610 (619)
                      ++++.|
T Consensus       535 ~~~~~~  540 (541)
T TIGR01315       535 RTQQEY  540 (541)
T ss_pred             HHHHhh
Confidence            999887

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=100.00  E-value=3.9e-87  Score=740.88  Aligned_cols=495  Identities=21%  Similarity=0.346  Sum_probs=431.8

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-c
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (619)
                      |+||||+|||++|+++||.+|++++..+.+++... .+|+.||||++||+++++++++++++.+.. .+|.+|||++| +
T Consensus         1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~   79 (505)
T TIGR01314         1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEILFVSFSTQMH   79 (505)
T ss_pred             CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEecccc
Confidence            58999999999999999999999999999887644 789999999999999999999999876544 67999999998 5


Q ss_pred             cc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccc
Q 007076          134 SL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF  209 (619)
Q Consensus       134 ~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  209 (619)
                      ++  ||++|+|+         +|+|+|+|.|+.++++++.+..  ++++++||+++++.++++||+|+++|+|++|++++
T Consensus        80 ~~v~~D~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~  150 (505)
T TIGR01314        80 SLIAFDENWQPL---------TRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA  150 (505)
T ss_pred             eeEEECCCcCCc---------ccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc
Confidence            64  49999999         8999999999999999998764  67899999999999999999999999999999999


Q ss_pred             eeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076          210 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  289 (619)
Q Consensus       210 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~  289 (619)
                      +|++++|||.|+|||+.. ++.|.              +++|++||+++++|++++++.+||++.+   ||    +++++
T Consensus       151 ~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~l~~~  208 (505)
T TIGR01314       151 KYLEIKGYIFQRLFGTYK-IDYST--------------ASATGMFNLFELDWDKEALELTGIKESQ---LP----KLVPT  208 (505)
T ss_pred             EEECHHHHHHHHHcCCce-eEhhh--------------hhhhcceeCCCCCCCHHHHHhcCCCHHH---CC----CCcCc
Confidence            999999999999999864 33332              5578899999999999999999999743   46    78999


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccc
Q 007076          290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF  369 (619)
Q Consensus       290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~  369 (619)
                      ++++|+ |++++|+++||++||||++|++|++|+++|+ |...|              +++++++|||+++..+++++..
T Consensus       209 g~~iG~-l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~~~~~~  272 (505)
T TIGR01314       209 TEIEEN-LPHEYAKKMGIQSSTPFVIGASDGVLSNLGV-NAIKK--------------GEAAVTIGTSGAIRTVIDKPKT  272 (505)
T ss_pred             ccccCC-cCHHHHHHhCCCCCCeEEEeccHHHHHHhcC-CCCCC--------------CcEEEEechhheeeeccCcCcc
Confidence            999998 9999999999999999999999999999998 55543              6899999999999888887765


Q ss_pred             cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCc
Q 007076          370 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED  449 (619)
Q Consensus       370 ~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g  449 (619)
                      ++... .+++...++.|+.+++++++|.+++||++++...  ..+.+...+.+.|+.+++++++.         |++++|
T Consensus       273 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~--~~~~~~~~~~~~y~~l~~~a~~~---------~~g~~g  340 (505)
T TIGR01314       273 DEKGR-IFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDS--EIETATRLGIDPYDVLTEIAARV---------SPGADG  340 (505)
T ss_pred             CCCCc-eEEEEecCCcEEEEeeecchHhHHHHHHHHhhhh--hhhhhhhcCCCHHHHHHHHHhhC---------CCCCCc
Confidence            54322 2222233467999999999999999999987431  11112223456788888877653         357889


Q ss_pred             eEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHH
Q 007076          450 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLF  528 (619)
Q Consensus       450 l~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~  528 (619)
                      ++|+|||.|+|+|+||+++||+|+|++.+|++.|+.   ||++||+||.++++++.+++ .+.++++|+++||++||++|
T Consensus       341 l~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~---rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w  417 (505)
T TIGR01314       341 LLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMI---RAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVW  417 (505)
T ss_pred             eEEecccccCCCCCCCCCccEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHH
Confidence            999999999999999999999999999999999865   59999999999999999977 67789999999999999999


Q ss_pred             HHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 007076          529 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV  608 (619)
Q Consensus       529 ~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~  608 (619)
                      +||+||++|+||+++...|++++|||++|++++|.+++++++ ..+.+..++|+|  ++++++.|+++|++|+++|++++
T Consensus       418 ~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~~~~~~~  494 (505)
T TIGR01314       418 RQMMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-STMVGTTETHTP--IEKNFEIYREISPIFINLSRSLL  494 (505)
T ss_pred             HHHHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HHhcCCCceECc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886 677778889999  99999999999999999999998


Q ss_pred             HHHHHHHH
Q 007076          609 SQRSIMAQ  616 (619)
Q Consensus       609 ~~~~~~~~  616 (619)
                      +...-+.+
T Consensus       495 ~~~~~~~~  502 (505)
T TIGR01314       495 AEYEQIAD  502 (505)
T ss_pred             HHHHHHHH
Confidence            76555443

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PRK15027 xylulokinase; Provisional

Probab=100.00  E-value=8.1e-87  Score=734.58  Aligned_cols=477  Identities=25%  Similarity=0.347  Sum_probs=414.7

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-c
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (619)
                      ++||||+|||++|++|||++|++++..+.+++.. +.+|+.||||++||+++++++++++++.  ..++|.+||||+| +
T Consensus         1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~q~~   78 (484)
T PRK15027          1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAGQMH   78 (484)
T ss_pred             CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEecCCC
Confidence            4899999999999999999999999999999865 4789999999999999999999999865  3568999999998 6


Q ss_pred             cc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhcccee
Q 007076          134 SL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW  211 (619)
Q Consensus       134 ~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~  211 (619)
                      ++  +|++|+|+         +|+++|+|.|+.++++++.+....+++.||.++++.++++||+|+++|+||+|+|+++|
T Consensus        79 ~~v~~D~~g~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~  149 (484)
T PRK15027         79 GATLLDAQQRVL---------RPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV  149 (484)
T ss_pred             ceEEECCCcCCc---------cccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhh
Confidence            64  49999999         89999999999999999987655667899999999999999999999999999999999


Q ss_pred             eechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007076          212 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH  291 (619)
Q Consensus       212 ~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g~  291 (619)
                      ++++|||.|+|||+.. ++.++              +++|++||+++++||+++|+.+||+..+   ||    +++++++
T Consensus       150 ~~~~dyl~~~LTG~~~-~d~s~--------------as~t~l~d~~~~~w~~~ll~~~gi~~~~---lP----~v~~~~~  207 (484)
T PRK15027        150 LLPKDYLRLRMTGEFA-SDMSD--------------AAGTMWLDVAKRDWSDVMLQACHLSRDQ---MP----ALYEGSE  207 (484)
T ss_pred             cChHHHHHhhhcCCcc-ccHHH--------------hhcccccccccCCCcHHHHHHhCCCHHH---CC----CCCCCcc
Confidence            9999999999999874 34333              4567899999999999999999998743   46    6889999


Q ss_pred             ccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccC
Q 007076          292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP  371 (619)
Q Consensus       292 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~  371 (619)
                      ++|+ |++++|+++||+ +|||++|++|++|+++|+ |..++              +++++++|||+++..+++++..++
T Consensus       208 ~~G~-l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~  270 (484)
T PRK15027        208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDA--------------NQAMLSLGTSGVYFAVSEGFLSKP  270 (484)
T ss_pred             cccc-ccHHHHHHhCCC-CCeEEecccHHHHHHhcc-CcccC--------------CcEEEEecCceEEEEecCCcccCc
Confidence            9997 999999999997 699999999999999999 55543              689999999999888887765544


Q ss_pred             CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceE
Q 007076          372 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH  451 (619)
Q Consensus       372 ~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~  451 (619)
                      ......+++..++.|++++.+.++|.+++|+++.+..             +.|+.+.+.+++      +   |++++|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~a~~------~---~~g~~gl~  328 (484)
T PRK15027        271 ESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------------SNVPALIAAAQQ------A---DESAEPVW  328 (484)
T ss_pred             hhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------------ccHHHHHHHHhh------C---CCCCCceE
Confidence            3211122345688899999999999999999986531             224445444433      2   36889999


Q ss_pred             EcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHH
Q 007076          452 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ  531 (619)
Q Consensus       452 flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi  531 (619)
                      |+|||.|+|+|+||+++||+|+|++.+|++.|+.   ||++||+||.++++++.+++.|.++++|+++||++||++|+||
T Consensus       329 ~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~---rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi  405 (484)
T PRK15027        329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQM  405 (484)
T ss_pred             EecccccCCCcCCCCCcceEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHH
Confidence            9999999999999999999999999999999864   5999999999999999999878889999999999999999999


Q ss_pred             HHhhhCCceeecCC-CCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007076          532 HADIIGCPIILPRE-NESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ  610 (619)
Q Consensus       532 ~Advlg~pV~~~~~-~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~  610 (619)
                      +||++|+||++... .+++++|||++|++++|.+++++++. .+.+..++|+|  |+++++.|+++|++|+++|++++..
T Consensus       406 ~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~~Y~~~~~~y~~~y~~~~~~  482 (484)
T PRK15027        406 LADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELL-PQLPLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLPL  482 (484)
T ss_pred             HHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHH-hhcCCCceECC--CHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            99999999976654 45889999999999999999999875 44467889999  9999999999999999999998653

>PRK04123 ribulokinase; Provisional

Probab=100.00  E-value=7.9e-85  Score=729.32  Aligned_cols=504  Identities=30%  Similarity=0.456  Sum_probs=425.2

Q ss_pred             CeEEEEEcCCcceEEEEEcC-CCCEEEEEEeecccc-------cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 007076           55 SVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIW-------KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG  126 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~-~g~il~~~~~~~~~~-------~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~a  126 (619)
                      +|+||||+|||++|++|||. +|+++++.+.+++.+       +.+||+||||++||+++++++++++++.+..+.+|.+
T Consensus         3 ~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~a   82 (548)
T PRK04123          3 AYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVVG   82 (548)
T ss_pred             cEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence            68999999999999999995 999999999888742       5889999999999999999999999887776778999


Q ss_pred             EEEcCc-ccc--ccCCCCeeeecCC--CCCCccceeecccccHHHHHHHHccc----hhHHhhh-CCCCCCCChHHHHHH
Q 007076          127 VGFAAT-CSL--VDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYC-GGAVSPEMQPPKLLW  196 (619)
Q Consensus       127 Igis~~-~~~--vd~~G~pl~~~~~--~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~t-G~~~~~~~~~~kl~W  196 (619)
                      ||||+| +++  ||++|+||.+.++  ..|..|+|+|+|.|+.++++++++..    +++++.+ |+.+++.++++||+|
T Consensus        83 Igis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~W  162 (548)
T PRK04123         83 IGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILH  162 (548)
T ss_pred             EEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHH
Confidence            999998 554  4999999953322  23335999999999999999998753    3577554 999999999999999


Q ss_pred             HHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCc-CCCCCHHHHHHcC-----
Q 007076          197 VKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDME-ACGWDDEFWEEIG-----  270 (619)
Q Consensus       197 l~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~-~~~W~~~ll~~~g-----  270 (619)
                      |++|+|++|+++++|++++|||.|+|||+...+..+.          ..+.++.+++||++ +..||+++|+.+|     
T Consensus       163 l~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~----------~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~~  232 (548)
T PRK04123        163 VLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVR----------SRCAAGHKALWHESWGGLPSADFFDALDPLLAR  232 (548)
T ss_pred             HHhhCHHHHHHHhHhccHHHHHHHHHhCCCCcccccc----------chhhcccccccccccCCCCCHHHHHHhccchhh
Confidence            9999999999999999999999999999653222211          01124567889998 5666999999996     


Q ss_pred             -CCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCe
Q 007076          271 -LGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR  349 (619)
Q Consensus       271 -i~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~  349 (619)
                       |+..+   ||    +++++++++|. |++++|+.+||++|+||++|+||++|+++|+ |. ++              ++
T Consensus       233 ~i~~~l---lP----~l~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~-g~-~~--------------g~  288 (548)
T PRK04123        233 GLRDKL---FT----ETWTAGEPAGT-LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA-GA-EP--------------GT  288 (548)
T ss_pred             hhHhhc---CC----ccccCCCcccc-cCHHHHHHhCCCCCCeEEecchhhhhhhccc-Cc-CC--------------Cc
Confidence             77543   35    78899999997 9999999999999999999999999999998 55 44              57


Q ss_pred             EEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHH
Q 007076          350 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG  429 (619)
Q Consensus       350 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~  429 (619)
                      +++++||++++..+++++...+..+..+..+..++.|.++++++++|.+++||++.+... +..+..++.+.+.|+.+++
T Consensus       289 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~-~~~~~~~~~~~~~~~~l~~  367 (548)
T PRK04123        289 LVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPP-EYKDEAEARGKQLLELLTE  367 (548)
T ss_pred             EEEEecCceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchH-hHHHHHHhcCCcHHHHHHH
Confidence            899999999988888765443333222222245678999999999999999999987421 1111122224467888888


Q ss_pred             HHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007076          430 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH  509 (619)
Q Consensus       430 ~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~  509 (619)
                      ++++.         |++++|++|+|||.|+|+|+|||++||+|+|++.+|++.|+   +||++||++|.++++++.|++.
T Consensus       368 ~a~~~---------~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~e~l~~~  435 (548)
T PRK04123        368 AAAKQ---------PPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFEDQ  435 (548)
T ss_pred             HHHhc---------CCCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence            77653         36889999999999999999999999999999999999986   5699999999999999999988


Q ss_pred             CCCcCEEEEecCC-cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhh-cCCeEEcCCCCh
Q 007076          510 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSKDP  587 (619)
Q Consensus       510 g~~~~~I~~~GG~-a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~~~  587 (619)
                      +.++++|+++||+ +||++|+||+||+||+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+|  ++
T Consensus       436 g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--~~  513 (548)
T PRK04123        436 GVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQP--DP  513 (548)
T ss_pred             CCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEec--CH
Confidence            8888999999999 99999999999999999999999999999999999999999999999877775 55678999  99


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 007076          588 KVKKYHDAKYLIFRELFEQQ  607 (619)
Q Consensus       588 ~~~~~y~~~y~~y~~l~~~~  607 (619)
                      +.++.|+++|++|+++|+.+
T Consensus       514 ~~~~~y~~~y~~y~~l~~~~  533 (548)
T PRK04123        514 ENVARYEQLYQEYKQLHDYF  533 (548)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999887

>PRK00047 glpK glycerol kinase; Provisional

Probab=100.00  E-value=3.6e-85  Score=723.99  Aligned_cols=478  Identities=20%  Similarity=0.325  Sum_probs=408.6

Q ss_pred             CCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        53 ~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +++|+||||+|||++|+++||.+|++++..+++++.. +.+||+||||++||+++++++++++++.+..+++|.+|||++
T Consensus         3 m~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~   82 (498)
T PRK00047          3 MKKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITN   82 (498)
T ss_pred             ccCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEec
Confidence            3479999999999999999999999999999988764 488999999999999999999999988777778899999999


Q ss_pred             c-ccc--ccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhH
Q 007076          132 T-CSL--VDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESW  205 (619)
Q Consensus       132 ~-~~~--vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~  205 (619)
                      | +++  ||++ |+|+         +|+|+|+|.|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|
T Consensus        83 ~~~~~v~~D~~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~  153 (498)
T PRK00047         83 QRETTVVWDKETGRPI---------YNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGAR  153 (498)
T ss_pred             CcceEEEEECCCCcCC---------cccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHH
Confidence            8 554  4965 9999         8999999999999999998653  4589999999999999999999999999997


Q ss_pred             hccc----eeeechhHHHhhhcCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcccccccc
Q 007076          206 SMVF----RWMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHA  280 (619)
Q Consensus       206 ~~~~----~~~~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp  280 (619)
                      +++.    +|++++|||.|+|||.. ..++.|+              +++|++||+++++||+++|+.+|||+.+   ||
T Consensus       154 ~~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP  216 (498)
T PRK00047        154 ERAEKGELLFGTIDTWLVWKLTGGKVHVTDYTN--------------ASRTMLFNIHTLDWDDELLELLDIPRSM---LP  216 (498)
T ss_pred             HHHhcCCeEEeChHHhHhhhhcCCCeeEeechH--------------HhhhhccccccCccCHHHHHhcCCCHHH---CC
Confidence            7765    47889999999999752 3345443              4567899999999999999999999743   36


Q ss_pred             ccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEeccccee
Q 007076          281 KIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCH  360 (619)
Q Consensus       281 ~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~  360 (619)
                          +++++++++|. |+++    +++.+||||++|++|++|+++|+ |...+              +++.+++|||+++
T Consensus       217 ----~i~~~g~~~G~-v~~~----~~l~~g~pV~~g~~D~~aa~~G~-G~~~~--------------g~~~~~~GTs~~~  272 (498)
T PRK00047        217 ----EVRPSSEVYGK-TNPY----GFFGGEVPIAGIAGDQQAALFGQ-LCFEP--------------GMAKNTYGTGCFM  272 (498)
T ss_pred             ----CccCCcccccc-cccc----ccCCCCceEEEEccHHHHHHHhC-cCCCC--------------CceEEeeccceEE
Confidence                68899999997 9887    67779999999999999999998 55543              5899999999986


Q ss_pred             eeee-ccccccCCc-cccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhh
Q 007076          361 MAVS-RNKLFIPGV-WGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH  436 (619)
Q Consensus       361 ~~~~-~~~~~~~~~-~~~~~~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  436 (619)
                      ...+ ++|..++.. ...+. +..++  .|+++++++++|.+++|++++++..            ..++.++++++.   
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~l~W~~~~~~~~------------~~~~~~~~~a~~---  336 (498)
T PRK00047        273 LMNTGEKAVKSENGLLTTIA-WGIDGKVVYALEGSIFVAGSAIQWLRDGLKII------------SDASDSEALARK---  336 (498)
T ss_pred             EEecCCccccCCCCceeEEE-EEcCCCcEEEEEeeHhhHHHHHHHHHHHhcCC------------CCHHHHHHHHhc---
Confidence            6666 455554432 11122 22344  6999999999999999999987421            113344444433   


Q ss_pred             ccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCE
Q 007076          437 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDT  515 (619)
Q Consensus       437 ~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~  515 (619)
                         +    ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+.   ||++|||||.+|++++.|++ .|.++++
T Consensus       337 ---~----~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~r~~~e~l~~~~g~~~~~  406 (498)
T PRK00047        337 ---V----EDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHII---RATLESIAYQTRDVLDAMQADSGIRLKE  406 (498)
T ss_pred             ---C----CCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence               1    26789999999999999999999999999999999999865   59999999999999999986 4778999


Q ss_pred             EEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHH
Q 007076          516 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA  595 (619)
Q Consensus       516 I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~  595 (619)
                      |+++||++||++|+||+||+||+||+++...|++++|||++|++++|.|++++++ ..+.+..++|+|  ++++++ |++
T Consensus       407 i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~-y~~  482 (498)
T PRK00047        407 LRVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEP--QMDEEE-REK  482 (498)
T ss_pred             EEEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-HhhcCCCeEECC--CCCHHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999987 667678899999  889887 999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007076          596 KYLIFRELFEQQVSQ  610 (619)
Q Consensus       596 ~y~~y~~l~~~~~~~  610 (619)
                      +|++|+++|+++..|
T Consensus       483 ~~~~~~~~~~~~~~~  497 (498)
T PRK00047        483 LYAGWKKAVKRTLAW  497 (498)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987754

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=100.00  E-value=2.5e-84  Score=722.44  Aligned_cols=503  Identities=29%  Similarity=0.434  Sum_probs=420.4

Q ss_pred             eEEEEEcCCcceEEEEEc-CCCCEEEEEEeeccc------ccC------CCccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 007076           56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQI------WKE------GDCIEQSSTDIWHAICAAVDSACSLANVDGE  122 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~------~~~------~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~  122 (619)
                      |+||||+|||++|++||| .+|++++..+.++++      ++.      +||+||||++||+++++++++++++.+..++
T Consensus         2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~   81 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA   81 (536)
T ss_pred             eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            699999999999999999 899999999988873      233      7999999999999999999999998776677


Q ss_pred             CEEEEEEcCc-cccc--cCCCCeeeecCC--CCCCccceeecccccHHHHHHHHccc----hhHHhhhCCCCCCCChHHH
Q 007076          123 EVKGVGFAAT-CSLV--DADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPK  193 (619)
Q Consensus       123 ~I~aIgis~~-~~~v--d~~G~pl~~~~~--~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~k  193 (619)
                      +|++||+|+| +++|  |++|+||++..+  ..+..++|+|+|.|+.++++++++..    ++++++||+++++.++++|
T Consensus        82 ~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~k  161 (536)
T TIGR01234        82 DVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAK  161 (536)
T ss_pred             HEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHH
Confidence            8999999999 6654  999999942000  00011299999999999999998753    5678899999999999999


Q ss_pred             HHHHHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCC--
Q 007076          194 LLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL--  271 (619)
Q Consensus       194 l~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi--  271 (619)
                      |+|+++|+||+|+++.+|++++|||.|+|||+... +.++              ++.++++|...+.||+++|+.+|+  
T Consensus       162 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~-d~s~--------------a~~~~l~~~~w~~~~~~~l~~~g~~~  226 (536)
T TIGR01234       162 ILQITEEDPAIYQAADRWIELADWIVAQLSGDIRR-GRCT--------------AGYKALWHESWGYPSASFFDELNPIL  226 (536)
T ss_pred             HHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCccc-cchh--------------cccceeccccccCCCHHHHHHhcchh
Confidence            99999999999999999999999999999998753 3332              223445555445559999999996  


Q ss_pred             ----CccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhccc
Q 007076          272 ----GDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC  347 (619)
Q Consensus       272 ----~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~  347 (619)
                          |+.+   +|    +++++++++|+ |++++|+++||++|+||++|++|++|+++|+ |..++              
T Consensus       227 ~~~lp~~~---~p----~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------  283 (536)
T TIGR01234       227 NRHLPDKL---FT----DIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAA-GIAQP--------------  283 (536)
T ss_pred             hhhhhhhc---CC----ceecCCCcccc-cCHHHHHHhCCCCCCeEEecchhHhhhhhcc-ccccC--------------
Confidence                4332   24    78999999997 9999999999999999999999999999998 55543              


Q ss_pred             CeEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHH
Q 007076          348 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL  427 (619)
Q Consensus       348 ~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l  427 (619)
                      +++.+++|||.++..+.+++...+..+..+..+..++.|.++++++++|.+++||++++... ++.......+.+.|+.|
T Consensus       284 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~l  362 (536)
T TIGR01234       284 GALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPP-ELKTEANASQKQLHEAL  362 (536)
T ss_pred             CcEEEEEccceEEEEecCccccCCceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcch-HHHHHHHhcCCCHHHHH
Confidence            68999999999987777654433332111111234678999999999999999999987422 12111222234568888


Q ss_pred             HHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007076          428 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN  507 (619)
Q Consensus       428 ~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~  507 (619)
                      ++.+++.         |++++||+|+|||.|+|+|+||+++||+|+|++.+|++.|+   +||++|||||.+|++++.|+
T Consensus       363 ~~~a~~~---------p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~---~RAvlEgia~~~~~~l~~l~  430 (536)
T TIGR01234       363 SEAAAKQ---------PSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLL---YRALIEATAFGTRMIMETFT  430 (536)
T ss_pred             HHHHHhC---------CCCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            8776642         36899999999999999999999999999999999999886   56999999999999999999


Q ss_pred             hCCCCcCEEEEecCC-cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhh-cCCeEEcCCC
Q 007076          508 AHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSK  585 (619)
Q Consensus       508 ~~g~~~~~I~~~GG~-a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~-~~~~~~~P~~  585 (619)
                      +.|.++++|+++||+ ++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+|  
T Consensus       431 ~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--  508 (536)
T TIGR01234       431 DSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTP--  508 (536)
T ss_pred             hcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECC--
Confidence            888889999999999 99999999999999999999999999999999999999999999999877776 56889999  


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 007076          586 DPKVKKYHDAKYLIFRELFEQQVSQR  611 (619)
Q Consensus       586 ~~~~~~~y~~~y~~y~~l~~~~~~~~  611 (619)
                      ++++++.|+++|++|+++|+++-.|.
T Consensus       509 ~~~~~~~y~~~y~~y~~l~~~~~~~~  534 (536)
T TIGR01234       509 CSENAQRYEQLYARYQELAMSFGQYN  534 (536)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999987653

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=100.00  E-value=2.6e-84  Score=667.88  Aligned_cols=481  Identities=23%  Similarity=0.375  Sum_probs=403.7

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecc-cccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~-~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++|+++||.||||+|+++||.+|++++..+++++ ++|+|||+||||.++|..+..++++++.++++.+.+|.+|||+.|
T Consensus         4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ   83 (499)
T COG0554           4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ   83 (499)
T ss_pred             ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence            4799999999999999999999999999999995 567999999999999999999999999999999999999999999


Q ss_pred             -cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 007076          133 -CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  206 (619)
Q Consensus       133 -~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  206 (619)
                       ..  +||++ |+|+         +|+|.|+|+|+.+.|++|++..  +.+.++||+.+.|+|+..|++|+.+|.|.+.+
T Consensus        84 RETtvvWdk~tG~Pi---------~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~  154 (499)
T COG0554          84 RETTVVWDKETGKPI---------YNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARE  154 (499)
T ss_pred             ceeEEEEeCCCCCCc---------ccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhh
Confidence             33  45876 9999         8999999999999999999884  66788899999999999999999999998877


Q ss_pred             cc----ceeeechhHHHhhhcCCcc-cccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076          207 MV----FRWMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  281 (619)
Q Consensus       207 ~~----~~~~~~~dyl~~~LTG~~~-~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~  281 (619)
                      |+    ..|+++++||.|+|||... .+|+|+              ||+|+|||+++.+||+++|+.||||+.++   | 
T Consensus       155 ~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~sN--------------ASRT~L~ni~~l~WD~elL~il~Ip~~~L---P-  216 (499)
T COG0554         155 RAEKGELLFGTIDTWLIWKLTGGKVHVTDYSN--------------ASRTMLFNIHSLEWDDELLELLGIPRSML---P-  216 (499)
T ss_pred             HhhcCCeEEecchhhheeeccCCceeccccch--------------hHHHhcccccccCCCHHHHHHhCCChHhC---c-
Confidence            76    5799999999999999653 566664              67899999999999999999999998765   6 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076          282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  361 (619)
Q Consensus       282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~  361 (619)
                         ++.++.++.|. ...     -.+...+||....||||||++|.. +.+||   +.|+|||||++ +.+++|+-.+  
T Consensus       217 ---ev~~ss~~~G~-t~~-----~~~g~~vPI~g~~GDQQAALfGq~-c~~pG---~~K~TYGTG~F-~l~ntG~~~~--  280 (499)
T COG0554         217 ---EVRPSSEIYGV-TGI-----GFLGAEVPITGVAGDQQAALFGQG-CFEPG---MAKNTYGTGCF-LLMNTGEKPV--  280 (499)
T ss_pred             ---ccccccccccc-ccc-----cccCCceeeccccchhHHHHhhcc-cCCcC---cccccccccee-eeeccCCccc--
Confidence               56777788885 322     234467999999999999999994 56687   89999999987 5567776422  


Q ss_pred             eeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCC
Q 007076          362 AVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP  441 (619)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p  441 (619)
                       .++...+..-.|.    ...+-.|.+||.+..+|.+++||+|.+.-    +        +.....+.++++.       
T Consensus       281 -~S~~~LLtTIa~~----l~gk~~YALEGsif~aGaavqWLrd~L~~----i--------~~a~~~e~~A~~~-------  336 (499)
T COG0554         281 -RSENGLLTTIAWG----LDGKVTYALEGSIFVAGAAVQWLRDGLGL----I--------DDASDSEELAESV-------  336 (499)
T ss_pred             -cCCCCceeEEEec----cCCeEEEEEecceeehhhHHHHHHHhcCc----c--------CchhHHHHHHhcc-------
Confidence             1222111111221    11234799999999999999999996532    1        1122333444432       


Q ss_pred             CccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEec
Q 007076          442 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG  520 (619)
Q Consensus       442 ~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~G  520 (619)
                         ..++|++|+|.|.|.++||||+++||.|+||+..|+++|++|   |++|||||+.+++++.|++ .+.++++++|.|
T Consensus       337 ---~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~R---A~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDG  410 (499)
T COG0554         337 ---EDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIAR---ATLESIAYQTRDVLEAMEKDSGIKLTRLRVDG  410 (499)
T ss_pred             ---CCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCceeEEEcC
Confidence               246899999999999999999999999999999999999875   9999999999999999987 566899999999


Q ss_pred             CCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHH
Q 007076          521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIF  600 (619)
Q Consensus       521 G~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y  600 (619)
                      |+++|+++||++||++|.||+++...|.+|+|||++|+.++|+|+|.+|.. .....++.|+|.++.+.+   +++|..|
T Consensus       411 G~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~~~~r---~~~y~~W  486 (499)
T COG0554         411 GASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMDEEER---EELYAGW  486 (499)
T ss_pred             ccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCCHHHH---HHHHHHH
Confidence            999999999999999999999999999999999999999999999999864 444678899998765443   6788899


Q ss_pred             HHHHHHHHHHH
Q 007076          601 RELFEQQVSQR  611 (619)
Q Consensus       601 ~~l~~~~~~~~  611 (619)
                      ++..++...|+
T Consensus       487 ~~AV~rs~~~~  497 (499)
T COG0554         487 KKAVKRSLGWR  497 (499)
T ss_pred             HHHHHHHhccc
Confidence            98777766554

>PLN02295 glycerol kinase

Probab=100.00  E-value=4.2e-84  Score=716.83  Aligned_cols=478  Identities=19%  Similarity=0.313  Sum_probs=404.6

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC----EEEEEEc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE----VKGVGFA  130 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~----I~aIgis  130 (619)
                      |+||||+|||++|++|||.+|++++..+.+++.. +.+||+||||++||+++++++++++++.+..+++    |.+||+|
T Consensus         1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s   80 (512)
T PLN02295          1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT   80 (512)
T ss_pred             CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence            5899999999999999999999999999999864 4899999999999999999999999987766666    7999999


Q ss_pred             Cc-ccc--c-cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc----hhHHhhhCCCCCCCChHHHHHHHHHhCc
Q 007076          131 AT-CSL--V-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQ  202 (619)
Q Consensus       131 ~~-~~~--v-d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~p  202 (619)
                      +| +++  | |++|+|+         +|+|+|+|.|+.++++++++..    +.++++||+++++.++++||+||++|+|
T Consensus        81 ~q~~~~v~~dd~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P  151 (512)
T PLN02295         81 NQRETTVAWSKSTGRPL---------YNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVD  151 (512)
T ss_pred             cCcceEEEEECCCCCCc---------ccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCH
Confidence            98 654  5 5789999         8999999999999999998752    2456899999999999999999999999


Q ss_pred             hhHhc----cceeeechhHHHhhhcCCc----ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcc
Q 007076          203 ESWSM----VFRWMDLSDWLSYRATGDD----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL  274 (619)
Q Consensus       203 e~~~~----~~~~~~~~dyl~~~LTG~~----~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~  274 (619)
                      |+|++    +.+|++++|||.|+|||+.    ..++.|+              +++|++||+++++||+++|+.+||+..
T Consensus       152 ~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~--------------As~t~l~D~~~~~W~~ell~~~gi~~~  217 (512)
T PLN02295        152 AVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTN--------------ASRTMLMNLKTLDWDKPTLEALGIPAE  217 (512)
T ss_pred             HHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHH--------------hHHhhccCcccCcCCHHHHHHcCCCHH
Confidence            99955    5589999999999999942    2345543              557789999999999999999999975


Q ss_pred             ccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEe
Q 007076          275 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVC  354 (619)
Q Consensus       275 l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~  354 (619)
                      +   ||    +++++++++|. |++++++     +||||++|++|++|+++|+ |+ .+              +++.+++
T Consensus       218 ~---lP----~l~~~~~~~G~-v~~~~a~-----~g~pV~~g~~D~~aa~~G~-G~-~~--------------g~~~~~~  268 (512)
T PLN02295        218 I---LP----KIVSNSEVIGT-IAKGWPL-----AGVPIAGCLGDQHAAMLGQ-RC-RP--------------GEAKSTY  268 (512)
T ss_pred             H---CC----CcccCccceec-ccccccc-----CCCcEEEEechHHHHHhhC-cC-CC--------------CCeEEEE
Confidence            4   36    68899999997 9987754     4999999999999999998 55 44              5789999


Q ss_pred             cccceeeeeeccc-cccC-Ccccccccc---ccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHH
Q 007076          355 GTSTCHMAVSRNK-LFIP-GVWGPFWSA---MVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG  429 (619)
Q Consensus       355 GTs~~~~~~~~~~-~~~~-~~~~~~~~~---~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~  429 (619)
                      ||++++...+..+ ..++ +....+.+.   ..++.|+++++.+++|.+++||++.+...            ..|+++++
T Consensus       269 GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~~~~  336 (512)
T PLN02295        269 GTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGII------------KSASEIEA  336 (512)
T ss_pred             cccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCC------------CCHHHHHH
Confidence            9998866555442 3332 221111111   12788999999999999999999876411            12444555


Q ss_pred             HHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007076          430 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH  509 (619)
Q Consensus       430 ~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~  509 (619)
                      ++++.          ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+.   ||++|||||.+|++++.|++.
T Consensus       337 ~a~~~----------~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~---RAvlEgia~~~r~~l~~l~~~  403 (512)
T PLN02295        337 LAATV----------DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIA---RAVLESMCFQVKDVLDAMRKD  403 (512)
T ss_pred             HHHhC----------CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence            44331          26789999999999999999999999999999999999965   599999999999999999865


Q ss_pred             ------CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcC
Q 007076          510 ------GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP  583 (619)
Q Consensus       510 ------g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P  583 (619)
                            +.++++|+++||+++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.++...++|+|
T Consensus       404 ~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P  483 (512)
T PLN02295        404 AGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRP  483 (512)
T ss_pred             hcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECC
Confidence                  33688999999999999999999999999999999999999999999999999999988765677788899999


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007076          584 SKDPKVKKYHDAKYLIFRELFEQQVSQRSI  613 (619)
Q Consensus       584 ~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~  613 (619)
                        |+++++ |+++|++|+++|++...++++
T Consensus       484 --~~~~~~-y~~~y~~~~~~~~~~~~~~~~  510 (512)
T PLN02295        484 --KLDEEE-RAKRYASWCKAVERSFDLADL  510 (512)
T ss_pred             --CCCHHH-HHHHHHHHHHHHHHHhcchhc
Confidence              899999 999999999999988776654

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=100.00  E-value=7.2e-84  Score=714.14  Aligned_cols=480  Identities=22%  Similarity=0.375  Sum_probs=407.1

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCC--CEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGE--EVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~--~I~aIgis~  131 (619)
                      +|+||||+|||++|++|||.+|++++..+.+++... .+|+.||||++||+++++++++++++.+..+.  +|.+||||+
T Consensus         2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis~   81 (504)
T PTZ00294          2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGITN   81 (504)
T ss_pred             cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEeec
Confidence            489999999999999999999999999999998654 78999999999999999999999988765555  799999999


Q ss_pred             c-ccc--ccC-CCCeeeecCCCCCCccceeecccccHHHHHHHHccc---hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 007076          132 T-CSL--VDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQES  204 (619)
Q Consensus       132 ~-~~~--vd~-~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~  204 (619)
                      | +++  ||+ +|+||         +|+|+|+|.|+.++++++.+..   +.++++||+++++.++++||+|+++|+|++
T Consensus        82 q~~~~v~~D~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~  152 (504)
T PTZ00294         82 QRETVVAWDKVTGKPL---------YNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAV  152 (504)
T ss_pred             CcceEEEEECCCCCCc---------ccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHH
Confidence            8 664  476 59999         8999999999999999998753   346689999999999999999999999999


Q ss_pred             Hhccce----eeechhHHHhhhcC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcccccc
Q 007076          205 WSMVFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH  278 (619)
Q Consensus       205 ~~~~~~----~~~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~  278 (619)
                      |+++++    +++++|||.|+|||  +.. ++.|+              |++|++||+++++|++++|+.+||+..+   
T Consensus       153 ~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~--------------As~tgl~D~~~~~W~~~ll~~~gi~~~~---  214 (504)
T PTZ00294        153 KDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTN--------------ASRTFLMNIKTLKWDEELLNKFGIPKET---  214 (504)
T ss_pred             HHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhh--------------hHHhhccCcccCccCHHHHHHhCCCHHH---
Confidence            996554    99999999999999  653 34433              5578899999999999999999999743   


Q ss_pred             ccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccc
Q 007076          279 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST  358 (619)
Q Consensus       279 lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~  358 (619)
                      ||    +++++++++|. |++   +.+|+++|+||++|++|++|+++|+ |+..+              +++.+++||++
T Consensus       215 LP----~v~~~~~~~G~-l~~---~~~~~~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs~  271 (504)
T PTZ00294        215 LP----EIKSSSENFGT-ISG---EAVPLLEGVPITGCIGDQQAALIGH-GCFEK--------------GDAKNTYGTGC  271 (504)
T ss_pred             CC----CccCCccccCc-cch---hhcCCCCCCcEEEEecHHHHHHHhC-cCCCC--------------CceEEeeccce
Confidence            46    68899999997 984   4678899999999999999999998 55433              57999999998


Q ss_pred             eeeeee-ccccccCC-cccccccccc---CCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHh
Q 007076          359 CHMAVS-RNKLFIPG-VWGPFWSAMV---PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLES  433 (619)
Q Consensus       359 ~~~~~~-~~~~~~~~-~~~~~~~~~~---~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  433 (619)
                      ++...+ +.+..++. .+..+++...   ++.|++++++.++|.+++|+++++...            ..|+.+++++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~  339 (504)
T PTZ00294        272 FLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLI------------SHPSEIEKLARS  339 (504)
T ss_pred             EEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCC------------CCHHHHHHHHHh
Confidence            865544 33444432 2222222221   448999999999999999999876411            124455555543


Q ss_pred             hhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Q 007076          434 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK  512 (619)
Q Consensus       434 ~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~  512 (619)
                      .          ++++|++|+|||.|+|+|+||+++||.|+|++.+|++.|+.   ||++|||||.+|++++.|++ .|.+
T Consensus       340 ~----------~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~---rAvlEgia~~~r~~~~~l~~~~g~~  406 (504)
T PTZ00294        340 V----------KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIV---RAALEAIALQTNDVIESMEKDAGIE  406 (504)
T ss_pred             C----------CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            2          26889999999999999999999999999999999999965   59999999999999999987 4778


Q ss_pred             cCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHH
Q 007076          513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY  592 (619)
Q Consensus       513 ~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~  592 (619)
                      +++|+++||+++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+....++|+|  |+++++ 
T Consensus       407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~~~~~~~~~~~~P--~~~~~~-  483 (504)
T PTZ00294        407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVKKLIRRSNSTFSP--QMSAEE-  483 (504)
T ss_pred             cceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHHHhccCCCcEECC--CCCHHH-
Confidence            89999999999999999999999999999999999999999999999999999999876433336789999  999999 


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007076          593 HDAKYLIFRELFEQQVSQRS  612 (619)
Q Consensus       593 y~~~y~~y~~l~~~~~~~~~  612 (619)
                      |+++|++|+++|+++..|-|
T Consensus       484 y~~~~~~~~~~~~~~~~~~~  503 (504)
T PTZ00294        484 RKAIYKEWNKAVERSLKWAK  503 (504)
T ss_pred             HHHHHHHHHHHHHHHhcccc
Confidence            99999999999998877654

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=100.00  E-value=1.9e-83  Score=713.38  Aligned_cols=490  Identities=22%  Similarity=0.309  Sum_probs=420.1

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc---cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW---KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~---~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|+||||+|||++|+++||.+|++++..+++++..   +.+|+.||||++||+++++++++++++.+....+|.+||+|+
T Consensus         3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~   82 (520)
T PRK10939          3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSATS   82 (520)
T ss_pred             cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEC
Confidence            59999999999999999999999999998887633   368999999999999999999999988776677899999999


Q ss_pred             c-ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc----hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 007076          132 T-CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQES  204 (619)
Q Consensus       132 ~-~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~  204 (619)
                      | +++  ||++|+|+         .+ +.|.|.|+.++++++++..    ++++++||.++ +.++++||+|+++|+||+
T Consensus        83 ~~~~~v~~D~~g~pl---------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~  151 (520)
T PRK10939         83 MREGIVLYDRNGTEI---------WA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDI  151 (520)
T ss_pred             CcccEEEECCCCCEe---------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHH
Confidence            8 554  49999999         44 5799999999999997753    46888999875 678999999999999999


Q ss_pred             HhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCc
Q 007076          205 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR  284 (619)
Q Consensus       205 ~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~  284 (619)
                      |+|+.+|++++|||.|+|||+.. ++.|+              +++|++||+++++||+++|+.+||++.+   ||    
T Consensus       152 ~~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------------As~tgl~d~~~~~W~~~ll~~~gi~~~~---lP----  209 (520)
T PRK10939        152 YRQAHTITMISDWIAYMLSGELA-VDPSN--------------AGTTGLLDLVTRDWDPALLEMAGLRADI---LP----  209 (520)
T ss_pred             HHHhheEechhHhhhheeeCcee-eEhhh--------------hhceeeeecCCCCCCHHHHHHcCCCHHH---CC----
Confidence            99999999999999999999874 34443              4577899999999999999999999754   36    


Q ss_pred             ccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeee
Q 007076          285 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS  364 (619)
Q Consensus       285 ~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~  364 (619)
                      +++++++++|. |++++|+.+||++|+||++|++|++|+++|+ |+..+              +++++++||+.++...+
T Consensus       210 ~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~  273 (520)
T PRK10939        210 PVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL-GVVRP--------------GQTAVLGGTFWQQVVNL  273 (520)
T ss_pred             CCccCCceeee-ecHHHHHhhCCCCCCcEEEeCchHHHHHhhc-CcccC--------------CcEEEeecCcceeEEec
Confidence            68899999997 9999999999999999999999999999998 55544              57899999999877777


Q ss_pred             ccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCcc
Q 007076          365 RNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA  444 (619)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~  444 (619)
                      +.+..++........+..++.|.+++.++++|.+++||+++++..+..  .++..+.+.|+.+++++++.         |
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~---------~  342 (520)
T PRK10939        274 PAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRDAFCAEEKL--LAERLGIDAYSLLEEMASRV---------P  342 (520)
T ss_pred             cccccCccccceeceeeeCCcceEeeeeccceeeeehHHhhhchHHHH--HHHhcCCCHHHHHHHHHhhC---------C
Confidence            766555532111223556888999999999999999999987542211  12223556788888877653         3


Q ss_pred             CCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEec
Q 007076          445 ALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS---SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG  520 (619)
Q Consensus       445 ~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~---~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~G  520 (619)
                      ++++|+  +|||.|++.|.++++++|+|+|++.+|   ++.|+   +||++|||||.+|++++.+++ .+.++++|+++|
T Consensus       343 ~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~---~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~G  417 (520)
T PRK10939        343 VGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATL---FRALEENAAIVSACNLQQIAAFSGVFPSSLVFAG  417 (520)
T ss_pred             CCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence            577787  599999986555568999999999987   67775   569999999999999999987 478899999999


Q ss_pred             CCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHH
Q 007076          521 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIF  600 (619)
Q Consensus       521 G~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y  600 (619)
                      |+++|++|+||+|||+|+||++++..|++++|||++|++++|.|++++++.+.+.+..++|+|  ++++++.|+++|++|
T Consensus       418 Gga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~y~~y  495 (520)
T PRK10939        418 GGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLAETGERLVRWERTFEP--NPENHELYQEAKEKW  495 (520)
T ss_pred             CcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHHHHHHHHcccCceECc--CHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988888778899999  999999999999999


Q ss_pred             HHHHHHHHHHH
Q 007076          601 RELFEQQVSQR  611 (619)
Q Consensus       601 ~~l~~~~~~~~  611 (619)
                      +++|++++.++
T Consensus       496 ~~l~~~~~~~~  506 (520)
T PRK10939        496 QAVYADQLGLV  506 (520)
T ss_pred             HHHHHHHHHHH
Confidence            99999887664

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=100.00  E-value=2e-83  Score=670.62  Aligned_cols=529  Identities=43%  Similarity=0.756  Sum_probs=466.9

Q ss_pred             CCeEEEEEcCCcceEEEEEcCC-CCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           54 RSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~-g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      ++|+||||+||.|.|+++||.. |++++.+.+|++... .+...||++.++|++++++++.+++++++++.+|++|||++
T Consensus         2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa   81 (544)
T COG1069           2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA   81 (544)
T ss_pred             ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence            4789999999999999999955 999999999999776 77788999999999999999999999999999999999999


Q ss_pred             ccccc--cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccc
Q 007076          132 TCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF  209 (619)
Q Consensus       132 ~~~~v--d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  209 (619)
                      ++++|  |++|+|++.........++|.|+|.|+.+++++++...++++...|..+++.|-.|||+|+++|.|++|+|+.
T Consensus        82 TcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~  161 (544)
T COG1069          82 TCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAA  161 (544)
T ss_pred             eeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhh
Confidence            87765  9999999765443333479999999999999999998888999999999999999999999999999999999


Q ss_pred             eeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076          210 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  289 (619)
Q Consensus       210 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~  289 (619)
                      +|+.+.|||.|+|||....+.++.+|+|+++.              -+.+.|++++++.+|++.... ...+|+.++++.
T Consensus       162 ~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~~~~--------------~~~~~~~~~~f~~ig~~~l~~-~~~~l~~~i~~~  226 (544)
T COG1069         162 HIFDLADWLTWKLTGSIARSRCTAGCKWNWLE--------------HEGGLWSADFFDKIGLDDLRE-LDSKLPEDIVPA  226 (544)
T ss_pred             hhhhHHHHHHHHhhcchhhccccceeeeeeec--------------cccCCCCHHHHHhcCchhhhc-ccccCCcccccC
Confidence            99999999999999999899999999998752              145679999999999886543 214566799999


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccc
Q 007076          290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF  369 (619)
Q Consensus       290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~  369 (619)
                      |+.+|+ +++++|+++||++||.|..|+.|.+++.+|+.+..               ++.+..++|||+|.+..++++.+
T Consensus       227 g~~vg~-Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~---------------~~~l~~I~GTStC~m~~s~~~~~  290 (544)
T COG1069         227 GEPVGG-LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ---------------PGSLAMIAGTSTCHMLLSEKPRF  290 (544)
T ss_pred             Cccccc-cCHHHHHHhCCCCCcEEeccceeccccccccccCC---------------CCeEEEEeccceEEEEecCCcee
Confidence            999996 99999999999999999999999999999985433               36899999999999999999999


Q ss_pred             cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCc
Q 007076          370 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED  449 (619)
Q Consensus       370 ~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g  449 (619)
                      .+++|+++.....||.|++||+++++|..++||.+.+....+........+.+.|+.+++.++.+......  ++++.++
T Consensus       291 v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~  368 (544)
T COG1069         291 VPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAA--IPPLASG  368 (544)
T ss_pred             cCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhc--cCcccCC
Confidence            99999999888899999999999999999999998864322221111112445666666666655433211  3578999


Q ss_pred             eEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHH
Q 007076          450 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL  529 (619)
Q Consensus       450 l~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~  529 (619)
                      ++|+|+|+|+|+|+-||+++|+|+|++++|++++++.+|+|.+|+++|..|.++|.|++.|+.+++|+++||..||++||
T Consensus       369 l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llm  448 (544)
T COG1069         369 LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLM  448 (544)
T ss_pred             cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCCh-hhHHHHHHHHHHHHHHHHHHH
Q 007076          530 QQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP-KVKKYHDAKYLIFRELFEQQV  608 (619)
Q Consensus       530 Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~-~~~~~y~~~y~~y~~l~~~~~  608 (619)
                      |+.||++|+||+++..+++.++|+||+++++.|.|.|+..|.++|........|  ++ +.++.|+++|++|++++....
T Consensus       449 ql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~~~~~~~--~~~~~~~~y~~lyr~y~~l~~~~~  526 (544)
T COG1069         449 QLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLP--PPPERAARYERLYRRYLQLHDDAE  526 (544)
T ss_pred             HHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcccceecC--ChHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999877666666  45 999999999999999999988


Q ss_pred             HHHHHHHHh
Q 007076          609 SQRSIMAQA  617 (619)
Q Consensus       609 ~~~~~~~~~  617 (619)
                      +..+.+.+.
T Consensus       527 ~~~~~~~k~  535 (544)
T COG1069         527 KHYARVMKP  535 (544)
T ss_pred             hhhhhhhcc
Confidence            877666553

>TIGR01311 glycerol_kin glycerol kinase

Probab=100.00  E-value=3.7e-82  Score=699.12  Aligned_cols=473  Identities=23%  Similarity=0.380  Sum_probs=405.9

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (619)
                      +|+||||+|||++|++|||.+|++++..+.+++.. +.+||.|||+++||+++++++++++++.++.+++|.+|||++| 
T Consensus         1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~   80 (493)
T TIGR01311         1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR   80 (493)
T ss_pred             CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence            47999999999999999999999999999988754 4889999999999999999999999988777788999999998 


Q ss_pred             ccc--ccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 CSL--VDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 ~~~--vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                      +++  ||++ |+|+         +|+|+|+|.|+.++++++++..  ++++++||.++++.++++||+|+++|+||+|++
T Consensus        81 ~~~v~~D~~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~  151 (493)
T TIGR01311        81 ETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREA  151 (493)
T ss_pred             ceEEEEECCCCcCc---------ccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHH
Confidence            554  4976 9999         8999999999999999998764  678999999999999999999999999999997


Q ss_pred             cc----eeeechhHHHhhhcC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076          208 VF----RWMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  281 (619)
Q Consensus       208 ~~----~~~~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~  281 (619)
                      ++    +|++++|||.|+|||  +.. ++.|+              +++|++||+++++|++++|+.+||++.+   || 
T Consensus       152 ~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~--------------As~t~l~d~~~~~W~~~~l~~~gi~~~~---lP-  212 (493)
T TIGR01311       152 AERGELLFGTIDTWLIWNLTGGKVHV-TDVTN--------------ASRTMLFNIHTLDWDDELLELFGIPREI---LP-  212 (493)
T ss_pred             hhcCCeEEECHhHhhhhhccCCceEE-eccch--------------hhhhhcccccccccCHHHHHHcCCCHHH---CC-
Confidence            75    488999999999999  553 44443              4567899999999999999999999743   36 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076          282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  361 (619)
Q Consensus       282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~  361 (619)
                         +++++++++|. |+++     ++++||||++|++|++|+++|+ |..++              +++++++||++++.
T Consensus       213 ---~l~~~g~~~G~-v~~~-----~l~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs~~~~  268 (493)
T TIGR01311       213 ---EVRSSSEVYGY-TDPG-----LLGAEIPITGVLGDQQAALFGQ-ACFKP--------------GQAKNTYGTGCFLL  268 (493)
T ss_pred             ---CccCCccceec-cccc-----ccCCCceEEEecccHHHHHhhC-cCCCC--------------CceEEeecccceEe
Confidence               68899999997 9876     7779999999999999999998 55543              58999999998865


Q ss_pred             eeec-cccccC-CccccccccccCC---eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhh
Q 007076          362 AVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH  436 (619)
Q Consensus       362 ~~~~-~~~~~~-~~~~~~~~~~~~~---~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~  436 (619)
                      +.+. .+..++ +....+++ ..++   .|+.++++.++|.+++||++.++..            ..|+.++++++.   
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~---  332 (493)
T TIGR01311       269 MNTGEKPVISKHGLLTTVAY-QLGGKKPVYALEGSVFVAGAAVQWLRDNLKLI------------KHAAESEALARS---  332 (493)
T ss_pred             eecCCccccCCCCceEEEEE-ecCCCCceEEEEeehhhhHHHHHHHHHHhCCC------------CCHHHHHHHHhc---
Confidence            5443 333333 22222222 2233   4899999999999999999987421            124555554432   


Q ss_pred             ccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCE
Q 007076          437 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDT  515 (619)
Q Consensus       437 ~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~  515 (619)
                         +    ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+.   ||++|||||.+|++++.|++. |.++++
T Consensus       333 ---~----~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~~~~~~~l~~~~g~~~~~  402 (493)
T TIGR01311       333 ---V----EDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIA---RAALEAIAFQTRDVLEAMEKDAGVEITK  402 (493)
T ss_pred             ---C----CCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence               1    36889999999999999999999999999999999999865   599999999999999999874 778899


Q ss_pred             EEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHH
Q 007076          516 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA  595 (619)
Q Consensus       516 I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~  595 (619)
                      |+++||++||++|+||+||++|+||+++...|++++|||++|++++|.|++++++ +.+.+..++|+|  ++++++ |++
T Consensus       403 i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P--~~~~~~-y~~  478 (493)
T TIGR01311       403 LRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALWRVEKTFEP--EMDEEE-REA  478 (493)
T ss_pred             EEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhcCCCcEECC--CCCHHH-HHH
Confidence            9999999999999999999999999999999999999999999999999999986 777788899999  888887 999


Q ss_pred             HHHHHHHHHHHHHH
Q 007076          596 KYLIFRELFEQQVS  609 (619)
Q Consensus       596 ~y~~y~~l~~~~~~  609 (619)
                      +|++|+++|+++..
T Consensus       479 ~~~~~~~~~~~~~~  492 (493)
T TIGR01311       479 RYAGWKEAVKRSLG  492 (493)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998754

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>TIGR01312 XylB D-xylulose kinase

Probab=100.00  E-value=2.9e-81  Score=692.29  Aligned_cols=474  Identities=28%  Similarity=0.441  Sum_probs=419.8

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-ccc
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL  135 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~  135 (619)
                      ||||+|||++|++|+|.+|+++++.+.+++... .+|+.+||++++|+++++++++++++.+..+.+|.+|||++| +|+
T Consensus         1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~   80 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL   80 (481)
T ss_pred             CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence            589999999999999999999999999998654 899999999999999999999999987777788999999987 776


Q ss_pred             c--cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhcccee
Q 007076          136 V--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW  211 (619)
Q Consensus       136 v--d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~  211 (619)
                      |  |++|+++         .|.++|+|.|..++++++++..  +.+++.+|+...+.++++||+|+++|+|++|+++.+|
T Consensus        81 v~~d~~g~~l---------~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~  151 (481)
T TIGR01312        81 VLLDANGEVL---------RPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKV  151 (481)
T ss_pred             EEECCCcCCC---------ccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhee
Confidence            6  9889999         7888999999998888887753  5778899999999999999999999999999999999


Q ss_pred             eechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007076          212 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH  291 (619)
Q Consensus       212 ~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g~  291 (619)
                      ++++|||.|+|||+.. ++.++              +++||+||+++++|++++|+.+|||+.+   ||    +++++++
T Consensus       152 ~~~~~yi~~~LtG~~~-~d~t~--------------as~tgl~d~~~~~W~~~~l~~~gi~~~~---Lp----~iv~~~~  209 (481)
T TIGR01312       152 MLPKDYLRYRLTGEYV-TEYSD--------------ASGTGWFDVAKRAWSKELLDALDLPESQ---LP----ELIESSE  209 (481)
T ss_pred             eCchHHHhhhhcCCee-eeHHH--------------hhcccccccCCCCCCHHHHHHhCCCHHH---CC----CccCCCC
Confidence            9999999999999864 33332              5678899999999999999999999743   46    6889999


Q ss_pred             ccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccC
Q 007076          292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP  371 (619)
Q Consensus       292 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~  371 (619)
                      ++|+ |++++|+++||++|+||++|+||++|+++|+ |...              ++++++++|||+++..+++++..++
T Consensus       210 ~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~  273 (481)
T TIGR01312       210 KAGT-VRPEVAARLGLSAGVPVAAGGGDNAAGAIGT-GTVD--------------PGDAMMSLGTSGVVYAVTDKPLPDP  273 (481)
T ss_pred             eeee-EcHHHHHHhCCCCCCeEEecchHHHHHhhCC-Cccc--------------CCcEEEEecCceEEEEecCCcccCc
Confidence            9997 9999999999999999999999999999998 5443              3689999999999988887766554


Q ss_pred             CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceE
Q 007076          372 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH  451 (619)
Q Consensus       372 ~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~  451 (619)
                      ......+++..++.|+.+++..++|.+++|+++.+..             ..|+.|++++++.         |+++++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~-------------~~~~~l~~~~~~~---------~~~~~~~~  331 (481)
T TIGR01312       274 AGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK-------------EDVEALNELAEQS---------PPGAEGVT  331 (481)
T ss_pred             ccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC-------------CcHHHHHHHHhcC---------CCCCCCeE
Confidence            3222223345578899999999999999999987631             1356777766542         35788999


Q ss_pred             EcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHH
Q 007076          452 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ  530 (619)
Q Consensus       452 flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Q  530 (619)
                      |+|||.|+|+|+||++++|+|+|++.+|++.|+.   ||++||+||.+|++++.|++. +.++++|+++||++||++|+|
T Consensus       332 ~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~---railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q  408 (481)
T TIGR01312       332 FLPYLNGERTPHLDPQARGSFIGLTHNTTRADLT---RAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQ  408 (481)
T ss_pred             EecccccCCCCCCCCCcceEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHH
Confidence            9999999999999999999999999999999865   599999999999999999885 578899999999999999999


Q ss_pred             HHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHH
Q 007076          531 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFE  605 (619)
Q Consensus       531 i~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~  605 (619)
                      |+||++|+||++++.+|++++|||++|++++|.|++++++.+.+.+..++|+|  ++++++.|+++|++|+++|+
T Consensus       409 ~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~~~~~~~~~~  481 (481)
T TIGR01312       409 MLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLP--IAENVEAYEELYERYKKLYQ  481 (481)
T ss_pred             HHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhccCCCceECC--CHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999988888888889999  99999999999999999873

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>PRK10331 L-fuculokinase; Provisional

Probab=100.00  E-value=1.2e-79  Score=675.33  Aligned_cols=456  Identities=21%  Similarity=0.264  Sum_probs=388.7

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccc--c-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI--W-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~--~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|+||||+|||++|+++||.+|++++..+.+++.  . +.+||.||||++||+++++++++++++.  ...+|.+||||+
T Consensus         2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~   79 (470)
T PRK10331          2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TECHIRGITVTT   79 (470)
T ss_pred             ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence            4799999999999999999999999999988763  2 3789999999999999999999998864  346799999999


Q ss_pred             c-cc--cccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 007076          132 T-CS--LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  206 (619)
Q Consensus       132 ~-~~--~vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  206 (619)
                      | ++  ++|++|+||         +|+|+|+|.|+.++++++++..  ++++++||+++.+.++++||+|+++|+|++|+
T Consensus        80 ~~~~~v~~D~~G~pl---------~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~  150 (470)
T PRK10331         80 FGVDGALVDKQGNLL---------YPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLE  150 (470)
T ss_pred             cccceEEECCCcCCc---------cCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHH
Confidence            8 54  459999999         8999999999999999998764  57889999999999999999999999999999


Q ss_pred             ccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCccc
Q 007076          207 MVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV  286 (619)
Q Consensus       207 ~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v  286 (619)
                      ++++|++++|||.|+|||+.. ++.|+              +++|++||+++++|++++++.+||++.+   ||    ++
T Consensus       151 ~~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~i  208 (470)
T PRK10331        151 QAHAWLFISSLINHRLTGEFT-TDITM--------------AGTSQMLDIQQRDFSPEILQATGLSRRL---FP----RL  208 (470)
T ss_pred             HhhhhcCHHHHHHHhhcCccc-cchhh--------------ccceeeeecccCCCCHHHHHHcCCCHHH---CC----Cc
Confidence            999999999999999999874 34443              4567899999999999999999999753   36    68


Q ss_pred             ccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeecc
Q 007076          287 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN  366 (619)
Q Consensus       287 ~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~  366 (619)
                      +++++++|+ |++++|+++||++|+||++|+||++|+++|+ |.. +              +++++++||+.++..++++
T Consensus       209 ~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~-~--------------g~~~~~~GT~~~~~~~~~~  271 (470)
T PRK10331        209 VEAGEQIGT-LQPSAAALLGLPVGIPVISAGHDTQFALFGS-GAG-Q--------------NQPVLSSGTWEILMVRSAQ  271 (470)
T ss_pred             ccccccccc-cCHHHHHHhCCCCCCeEEEccccHHHHHhCC-CCC-C--------------CCEEEecchhhhheeecCC
Confidence            899999997 9999999999999999999999999999998 543 3              5789999999998877776


Q ss_pred             ccccCC--cccc-ccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCc
Q 007076          367 KLFIPG--VWGP-FWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV  443 (619)
Q Consensus       367 ~~~~~~--~~~~-~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~  443 (619)
                      +.....  .... +..+..++.|..++.... |.+++|+++++..           +.+.|+.|++++++.         
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~W~~~~~~~-----------~~~~y~~l~~~a~~~---------  330 (470)
T PRK10331        272 VDTSLLSQYAGSTCELDSQSGLYNPGMQWLA-SGVLEWVRKLFWT-----------AETPYQTMIEEARAI---------  330 (470)
T ss_pred             CcccccccccccceeccccCceeeechhhHH-HHHHHHHHHHhcc-----------cCchHHHHHHHHhcC---------
Confidence            554321  0011 111233556655544444 4489999987742           124678887776542         


Q ss_pred             cCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007076          444 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL  522 (619)
Q Consensus       444 ~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~  522 (619)
                      |++++|++|+|+|.|+|        ||+|+|++.+|++.|+   +||++|||||++|++++.|++. +.++++|+++||+
T Consensus       331 ~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGg  399 (470)
T PRK10331        331 PPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGG  399 (470)
T ss_pred             CCCCCceEecccccccC--------ceeEECCCCCcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Confidence            36889999999999987        9999999999999986   5699999999999999999886 4578999999999


Q ss_pred             cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHH
Q 007076          523 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA  595 (619)
Q Consensus       523 a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~  595 (619)
                      +||++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+....++|+|  + .+++.|++
T Consensus       400 a~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~~~~~~~~P--~-~~~~~y~~  469 (470)
T PRK10331        400 SRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMKYQYRYFYP--Q-TEPEFIEE  469 (470)
T ss_pred             ccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHhhcceeECC--C-ccHhhhhc
Confidence            9999999999999999999999999999999999999999999999988888777789999  7 55777764

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-79  Score=674.06  Aligned_cols=489  Identities=29%  Similarity=0.447  Sum_probs=419.9

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCC-CCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~-g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (619)
                      |+++|+||||+|||++|+++||.+ |++++..+.+++.. +.+||.||||++||+++++++++++++.+++..+|.+|||
T Consensus         1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i   80 (502)
T COG1070           1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI   80 (502)
T ss_pred             CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence            456899999999999999999998 89999999988877 5999999999999999999999999987777889999999


Q ss_pred             cCc-cccc--cCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchh
Q 007076          130 AAT-CSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES  204 (619)
Q Consensus       130 s~~-~~~v--d~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~  204 (619)
                      ++| +++|  |++|+||         +|+|+|+|.|+.++++++.+..  ++.+..||.++.+.++++||+|+++|+||+
T Consensus        81 s~~~~g~vllD~~g~~L---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~  151 (502)
T COG1070          81 SGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDL  151 (502)
T ss_pred             eccccceEEECCCCCCc---------cccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHH
Confidence            998 6654  9999999         8999999999999999998874  467777999999999999999999999999


Q ss_pred             HhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCc-cccccccccC
Q 007076          205 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGD-LIDGHHAKIG  283 (619)
Q Consensus       205 ~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~-~l~~~lp~l~  283 (619)
                      |+|+.+|++++|||.|+|||++. ++.|+              ++.|++||+++++|+.++|+.+|+++ .+   ||   
T Consensus       152 ~~k~~~il~~~dyl~~rLTG~~~-~e~s~--------------as~t~l~d~~~~~w~~~~l~~~gl~~~~~---lp---  210 (502)
T COG1070         152 FAKAAKILLIKDYLRYRLTGEFA-TEISD--------------ASGTGLLDIRTRKWDWELLAALGLPERDL---LP---  210 (502)
T ss_pred             HHhhhheechHHHHHHHHhCCcc-ccccc--------------ccccccccccccccCHHHHHHcCCChHHh---CC---
Confidence            99999999999999999999975 34443              45678999999999999999999995 43   46   


Q ss_pred             cccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeee
Q 007076          284 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAV  363 (619)
Q Consensus       284 ~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~  363 (619)
                       +++.+++++|. |++++|+++||++++||++|+||++++++|+ |+.++              +++..++||+.++...
T Consensus       211 -~vv~~g~~~G~-l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~-g~~~~--------------g~~~~~~gts~~~~~~  273 (502)
T COG1070         211 -PVVEPGEVLGT-LTPEAAEELGLPAGTPVVVGGGDNAAAALGA-GAVDP--------------GDVSSSTGTSGVVRAA  273 (502)
T ss_pred             -CccCccceecc-ccHHHHHHhCCCCCCeEEECCchHHHHhccC-CCcCC--------------CcEEEEeccccEEeee
Confidence             78999999997 9999999999999999999999999999998 67654              4688899999988888


Q ss_pred             eccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCc
Q 007076          364 SRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV  443 (619)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~  443 (619)
                      ++++..++......+++..++.|+.++..+++|.+++|+++.+....            .+..+.......+       .
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~------------~~~~~~~~~~~~~-------~  334 (502)
T COG1070         274 TDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAE------------SYPELLEEALAVP-------A  334 (502)
T ss_pred             ccccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhcccc------------CcHHHHHHHHhcc-------C
Confidence            87765544322222334457788888999999999999998764310            1222222222111       1


Q ss_pred             cCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007076          444 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL  522 (619)
Q Consensus       444 ~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~  522 (619)
                      ++++.++.|+|||.|||.|++++++|+.|+|++..|++.++.   ||++||++|.++..++.|++. +.++++|+++||+
T Consensus       335 ~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~---ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGg  411 (502)
T COG1070         335 PAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLA---RAVLEGVAFALADGLEALEELGGKPPSRVRVVGGG  411 (502)
T ss_pred             CCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCc
Confidence            357889999999999999999999999999999999998865   599999999999999999996 7889999999999


Q ss_pred             cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccC-CHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHH
Q 007076          523 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFR  601 (619)
Q Consensus       523 a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~-~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~  601 (619)
                      |||++|+||+||++|+||.++...|++++|+|++++.+++.+. +.+++.+.+.. .+.+.|  |++..+.|+++|++|+
T Consensus       412 ars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p--~~~~~~~y~~~~~~~~  488 (502)
T COG1070         412 ARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVD-ARRIIP--DPERAAAYQELYERYR  488 (502)
T ss_pred             ccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcccc-ccccCC--ChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888888876554 44554444444 788999  9999999999999999


Q ss_pred             HHHHHHHHHHH
Q 007076          602 ELFEQQVSQRS  612 (619)
Q Consensus       602 ~l~~~~~~~~~  612 (619)
                      ++|+++..+..
T Consensus       489 ~~y~~~~~~~~  499 (502)
T COG1070         489 ALYQALLALYR  499 (502)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=100.00  E-value=1.3e-76  Score=649.79  Aligned_cols=450  Identities=21%  Similarity=0.290  Sum_probs=380.9

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecc--c-ccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQ--I-WKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~--~-~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      |+||||+|||++|++|||.+|++++..+.+++  . .+.+||.||||++||+++++++++++.+  ..+.+|.+||+++|
T Consensus         2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~~   79 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTTF   79 (465)
T ss_pred             eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEecc
Confidence            68999999999999999999999999988865  3 3478999999999999999999999865  34567999999998


Q ss_pred             -cc--cccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 -CS--LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 -~~--~vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                       ++  ++|++|+|+         +|+|+|+|.|+.++++++.+..  ++++++||.++.+.++++||+|+++|+||+|++
T Consensus        80 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~  150 (465)
T TIGR02628        80 GVDGAPFDKQGNQL---------YPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFER  150 (465)
T ss_pred             ccceEEECCCCCCc---------cccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHH
Confidence             55  459999999         8999999999999999998763  578899999999999999999999999999999


Q ss_pred             cceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccc
Q 007076          208 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA  287 (619)
Q Consensus       208 ~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~  287 (619)
                      +++|++++|||.|+|||+.. ++.++              +++|++||+++++||+++|+.+||++.+   ||    +++
T Consensus       151 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~w~~ell~~~gi~~~~---lP----~l~  208 (465)
T TIGR02628       151 MHKFVFISSMITHRLTGEFT-TDITM--------------AGTSMMTDLTQRNWSPQILQALGLSRRL---FP----PLV  208 (465)
T ss_pred             HHHhhCcHHHHHHHHhCCcc-cchhh--------------hhcceeeecCcCCCCHHHHHHcCCCHHH---CC----Ccc
Confidence            99999999999999999875 34433              4577899999999999999999999753   36    688


Q ss_pred             cCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccc
Q 007076          288 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK  367 (619)
Q Consensus       288 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~  367 (619)
                      ++++++|. |++++|+++||++||||++|++|++|+++|+ +.. +              +++++++|||+++...+++|
T Consensus       209 ~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~-~--------------g~~~~~~GTs~~~~~~~~~~  271 (465)
T TIGR02628       209 EAGEQIGT-LQNSAAAMLGLPVGVPVISAGHDTQFALFGS-GAE-Q--------------NQPVLSSGTWEILMARSQQV  271 (465)
T ss_pred             cCCcccee-eCHHHHHHhCCCCCCCEEecCccHHHHHhcc-CCC-C--------------CcEEEeccchhhheeccCcC
Confidence            99999997 9999999999999999999999999999998 543 3              57899999999888777766


Q ss_pred             cccCCcc-cccc--ccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCcc
Q 007076          368 LFIPGVW-GPFW--SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA  444 (619)
Q Consensus       368 ~~~~~~~-~~~~--~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~  444 (619)
                      ..++... ..+.  .+..++.|...+....+| +++||++.+...+    .   .+.+.|+.+++.+++.         +
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~----~---~~~~~~~~l~~~a~~~---------~  334 (465)
T TIGR02628       272 DTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAE----T---PSDHYYQMMIEEARLI---------A  334 (465)
T ss_pred             CCCccccccccccccccCCceeeehhhhhhhh-HHHHHHHHhcchh----h---ccccHHHHHHHHHHhC---------C
Confidence            6554321 1111  112356676555445555 8999998763210    0   1123568888776653         3


Q ss_pred             CCCCceE-EcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007076          445 ALTEDIH-VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL  522 (619)
Q Consensus       445 ~g~~gl~-flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~  522 (619)
                      ++++|++ |+|++.        +.+||+|+|++.+|++.|+   +||++||+||.+|++++.|++. +.++++|+++||+
T Consensus       335 ~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGg  403 (465)
T TIGR02628       335 NGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGG  403 (465)
T ss_pred             CCCCcceeecccCC--------cccceeEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc
Confidence            5788998 888753        5689999999999999886   5699999999999999999986 4688999999999


Q ss_pred             cCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcC
Q 007076          523 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP  583 (619)
Q Consensus       523 a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P  583 (619)
                      ++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+....++|+|
T Consensus       404 a~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~~~~~~~~P  464 (465)
T TIGR02628       404 SKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQYRYFYP  464 (465)
T ss_pred             cCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhhccceeeCC
Confidence            9999999999999999999999999999999999999999999999988888777888999

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>PLN02669 xylulokinase

Probab=100.00  E-value=1.9e-73  Score=633.13  Aligned_cols=485  Identities=16%  Similarity=0.133  Sum_probs=395.4

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccc----ccCCCccccCHH----------HHHHHHHHHHHHHHHHcCC
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WKEGDCIEQSST----------DIWHAICAAVDSACSLANV  119 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~----~~~~g~~e~dp~----------~~~~~~~~~l~~~~~~~~~  119 (619)
                      ++|+||||+|||++|++|||++|+++++++.+++.    +..+|++||||+          .||+++..+++++. +.+.
T Consensus         7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~   85 (556)
T PLN02669          7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKF   85 (556)
T ss_pred             CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCC
Confidence            36899999999999999999999999999998863    235678999998          67899999999987 4566


Q ss_pred             CCCCEEEEEEcCc-cccc--cC-CCCeeeec-CCC---------CCCccceeecccccHHHHHHHHccc---hhHHhhhC
Q 007076          120 DGEEVKGVGFAAT-CSLV--DA-DGSPVSVS-WNG---------DSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCG  182 (619)
Q Consensus       120 ~~~~I~aIgis~~-~~~v--d~-~G~pl~~~-~~~---------~~~~p~i~W~D~R~~~~~~~l~~~~---~~~~~~tG  182 (619)
                      +.++|.+|++|+| +|+|  |+ .|+|+.++ .++         ...+|+++|+|.|+.++++++++..   ++++++||
T Consensus        86 ~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG  165 (556)
T PLN02669         86 PFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTG  165 (556)
T ss_pred             ChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHC
Confidence            6788999999998 7754  77 48887432 111         1125899999999999999998763   47889999


Q ss_pred             CCCCCCChHHHHHHHHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCC
Q 007076          183 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWD  262 (619)
Q Consensus       183 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~  262 (619)
                      +++++.|+.+||+|+++|+||+|+++.+|+.++|||.|+|||+...+|.|+              ++++++||+++++||
T Consensus       166 ~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sd--------------asg~~l~Di~~~~Ws  231 (556)
T PLN02669        166 SRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETD--------------GAGMNLMDIEKRCWS  231 (556)
T ss_pred             CcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchh--------------hhhhhhhccccCCcC
Confidence            999999999999999999999999999999999999999999864456554              446778999999999


Q ss_pred             HHHHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhh
Q 007076          263 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENE  342 (619)
Q Consensus       263 ~~ll~~~gi~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~  342 (619)
                      +++|+.+++...  .+||    +++++++++|+ |++++|+++||++||||++|++|++|+++|+ |+.++         
T Consensus       232 ~~ll~~~~~~l~--~~Lp----~~~~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~-g~~~~---------  294 (556)
T PLN02669        232 KAALEATAPGLE--EKLG----KLAPAHAVAGK-IHPYFVQRFGFSSNCLVVQWSGDNPNSLAGL-TLSTP---------  294 (556)
T ss_pred             HHHHHhhCccHH--HHCc----CCCCCCcceee-eCHHHHHHhCCCCCCEEEEecchHHHHHhcc-CCCCC---------
Confidence            999999954311  1245    68889999997 9999999999999999999999999999998 66544         


Q ss_pred             hhcccCeEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCC
Q 007076          343 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS  422 (619)
Q Consensus       343 ~g~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~  422 (619)
                           +++.+++|||+++..+++++.+++.. ..+++...++.|+.+++..++|.+++|+++++.             .+
T Consensus       295 -----g~~~~slGTs~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~-------------~~  355 (556)
T PLN02669        295 -----GDLAISLGTSDTVFGITREPQPSLEG-HVFPNPVDPESYMVMLCYKNGSLTREDIRNRCA-------------DG  355 (556)
T ss_pred             -----CeEEEEEcccceEEEecCCCCCCCCc-ceeeCccCCCCeEEEEEecchHHHHHHHHHHhc-------------cC
Confidence                 68999999999988888876655432 123333447899999999999999999998763             13


Q ss_pred             HHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCC----CCCCCcEeEEcCCCC---------CCHHHHHHHHH
Q 007076          423 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI----ADPKSKGIICGMTLD---------SSEKQLALLYL  489 (619)
Q Consensus       423 ~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~----~d~~a~g~~~Gl~~~---------~~~~~l~~~~r  489 (619)
                      .|+.|++++++.         |++++|++++||+.||+.|+    +++.++|.|+|++.+         |++.|+   +|
T Consensus       356 ~~~~~~~~~~~~---------~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~---~R  423 (556)
T PLN02669        356 SWDVFNKLLEQT---------PPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSE---VR  423 (556)
T ss_pred             cHHHHHHHHHhC---------CCCCCCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHH---HH
Confidence            467777776552         35789999899999999996    566788999999988         578886   56


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHH
Q 007076          490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIE  569 (619)
Q Consensus       490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~  569 (619)
                      |++||++|++|.+++.|+ .+.++++|+++||+|+|+.|+||+|||||+||++++..|++++|||++|+++  ++.+  +
T Consensus       424 AvlEg~a~~~r~~~~~l~-~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~--~~~~--~  498 (556)
T PLN02669        424 AIIEGQFLSMRAHAERFG-MPVPPKRIIATGGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAAHG--WLCN--E  498 (556)
T ss_pred             HHHHHHHHHHHHHHHHHh-CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHHHH--Hhhh--h
Confidence            999999999999999996 3567899999999999999999999999999999999999999999999984  4433  1


Q ss_pred             HHHHhhcCC-------------eEE--cCCCCh-hhHHHHHHHHHHHHHHHHHHHH
Q 007076          570 AMKAMNAAG-------------QVI--HPSKDP-KVKKYHDAKYLIFRELFEQQVS  609 (619)
Q Consensus       570 a~~~~~~~~-------------~~~--~P~~~~-~~~~~y~~~y~~y~~l~~~~~~  609 (619)
                      + ..+++..             ..+  +|  .+ +..+.|..+.++|.++-+.+..
T Consensus       499 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~  551 (556)
T PLN02669        499 Q-GSFVPISCLYEGKLEATSLSCKLAVKA--GDQELLSQYGLLMKKRMEIEQQLVE  551 (556)
T ss_pred             h-cccCChhhhcccccccCcccceeeccC--CCccHHHHHHHHHHHHHHHHHHHHH
Confidence            1 2221111             112  55  33 6677888888888887766543

>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-67  Score=556.12  Aligned_cols=489  Identities=36%  Similarity=0.560  Sum_probs=388.4

Q ss_pred             CCeEEEEEcCCcceEEEEEc-CCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEE
Q 007076           54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVD---GEEVKGVG  128 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~---~~~I~aIg  128 (619)
                      +++++|||+||||+|++||| .+|+++..++.++... +.+||+||||.++|+++++||+++.+..+..   ...+.+||
T Consensus         5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig   84 (516)
T KOG2517|consen    5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG   84 (516)
T ss_pred             cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence            57899999999999999999 7899999999888765 4899999999999999999999998876543   34477799


Q ss_pred             EcCc-cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccch-hH---HhhhCCCCCCCChHHHHHHHHHh
Q 007076          129 FAAT-CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNS-PV---LQYCGGAVSPEMQPPKLLWVKEN  200 (619)
Q Consensus       129 is~~-~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~-~~---~~~tG~~~~~~~~~~kl~Wl~~~  200 (619)
                      |+.| ++  +|++. |+|+         .++|.|+|.|+..++++++.... ..   ...+|++++++|.++||+||++|
T Consensus        85 v~~qr~~~v~w~~~tg~p~---------~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn  155 (516)
T KOG2517|consen   85 VVNQREGSVLWNKRTGEPL---------TNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDN  155 (516)
T ss_pred             EEecCCceEEeecCCCCcc---------cceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhh
Confidence            9998 44  44765 9998         79999999999999999998752 22   25799999999999999999999


Q ss_pred             Cchh-HhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccc
Q 007076          201 LQES-WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHH  279 (619)
Q Consensus       201 ~pe~-~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~l  279 (619)
                      .|++ .......+..++|+.|++++-...+.+  .       -.+.++++++++||..++.||..+++.+|||..++   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~--~-------~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~ll---  223 (516)
T KOG2517|consen  156 VPEVLKAKEEGGFDLGTFDTWLATGLTGRSSC--H-------CTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLL---  223 (516)
T ss_pred             CHHHHHHHHhcccchhhhhhheeecCCcccee--c-------cccccccccccccchhhhhhhhhhhhhhCCCcccC---
Confidence            9998 666677666666666666554321111  0       01234577899999999999999999999998765   


Q ss_pred             cccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccce
Q 007076          280 AKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTC  359 (619)
Q Consensus       280 p~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~  359 (619)
                      |    ++..+++++|. +   .+..+|+.+|+||.++.+|++|+++|..+.. +              +....+.||+..
T Consensus       224 p----~i~s~~e~~g~-~---~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~-~--------------g~~~~t~~t~~F  280 (516)
T KOG2517|consen  224 P----DIRSSSEVYGT-T---AAGDLGLLEGTPVSSCLGDQQASMVGQMCYK-P--------------GCAKLTYGTGCF  280 (516)
T ss_pred             C----ccccccccccc-c---cccccccccCcceeechhhHHHHHHhHhhhc-C--------------cceEEeeCCceE
Confidence            5    67788898886 3   2346779999999999999999999985543 2              356666677665


Q ss_pred             eeeeecccc--ccCCcccccc-ccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhh
Q 007076          360 HMAVSRNKL--FIPGVWGPFW-SAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM  434 (619)
Q Consensus       360 ~~~~~~~~~--~~~~~~~~~~-~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  434 (619)
                      +........  ..++.|.... ......  .|+++|....+|..++|+++.+...++            ...+++++.+.
T Consensus       281 l~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~------------~~~i~~~~~~~  348 (516)
T KOG2517|consen  281 LLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEE------------LNEIEKLAAEV  348 (516)
T ss_pred             EeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHH------------HHHHHHHHHhh
Confidence            554443211  1122221100 001111  377788888888899999887642211            11233334332


Q ss_pred             hhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCc
Q 007076          435 IHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKI  513 (619)
Q Consensus       435 ~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g-~~~  513 (619)
                                ..+.+++|+|.|.|.|+|||||++||+|+|++.+|+.+|+++   |++|+|||++|++++.|++.+ .++
T Consensus       349 ----------~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~---A~leai~fqtr~Il~am~~~~~~~i  415 (516)
T KOG2517|consen  349 ----------NLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLAR---AALEAIAFQTREILEAMERDGGHPI  415 (516)
T ss_pred             ----------cccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                      258899999999999999999999999999999999999876   999999999999999999876 799


Q ss_pred             CEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccc--cCCHHHHHHHhhcCCeEEcCCCChhhHH
Q 007076          514 DTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR--YSSLIEAMKAMNAAGQVIHPSKDPKVKK  591 (619)
Q Consensus       514 ~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~--~~~~~~a~~~~~~~~~~~~P~~~~~~~~  591 (619)
                      ++++++||.++|++++|++||++|+||+++...|.+++|||++|+.+.|.  |.+.+++.  +....++|.|+.+.   +
T Consensus       416 ~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P~~~~---~  490 (516)
T KOG2517|consen  416 STLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRPNIDD---K  490 (516)
T ss_pred             ceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecCCCCc---H
Confidence            99999999999999999999999999999999999999999999999999  66666643  46778999995443   8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007076          592 YHDAKYLIFRELFEQQVSQRSIMAQ  616 (619)
Q Consensus       592 ~y~~~y~~y~~l~~~~~~~~~~~~~  616 (619)
                      .++.+|++|++++++++.|++++..
T Consensus       491 ~~~~ky~~w~~ave~~~~~~~~~~~  515 (516)
T KOG2517|consen  491 LLDKKYQIWLKAVERQLGYRRIVDE  515 (516)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhhccC
Confidence            8999999999999999999998753

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=100.00  E-value=1.9e-67  Score=576.16  Aligned_cols=427  Identities=16%  Similarity=0.161  Sum_probs=345.3

Q ss_pred             EEEEcCCcceEEEEEcCC---CCEE-EEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           58 LGVDVGTGSARAGLFDES---GKLL-GSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~---g~il-~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      +|||+|||++|++++|.+   |+++ ....++++.. +.+++.+|||+.||+++.++++++.+.    ..+|.+|||++|
T Consensus         1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~Igis~q   76 (454)
T TIGR02627         1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDSIGIDTW   76 (454)
T ss_pred             CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceEEEEecc
Confidence            589999999999999977   5666 5666665543 478899999999999999999998763    346999999999


Q ss_pred             -ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 -CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 -~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                       +++  ||++|+|+         +|+|+|+|.|+.++++++++..  ++++++||+++.+.++++||+|+++|+|++|+|
T Consensus        77 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~  147 (454)
T TIGR02627        77 GVDFVLLDQNGQRV---------GDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEK  147 (454)
T ss_pred             ceeEEEEcCCCCCc---------cCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHH
Confidence             554  49999999         8999999999999999998764  678999999999999999999999999999999


Q ss_pred             cceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccc
Q 007076          208 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA  287 (619)
Q Consensus       208 ~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~  287 (619)
                      +++|++++|||.|+|||+.. ++.|+              +|+|++||+++++||+++++.+||++.+   ||    +++
T Consensus       148 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP----~l~  205 (454)
T TIGR02627       148 VAHFLLIPDYLNYRLTGKKV-WEYTN--------------ATTTQLVNINTDDWDEDLLAYLGVPAAW---FG----RPT  205 (454)
T ss_pred             HHHhCCHHHHHHHheeCCce-eeeeh--------------hhhcccccCCCCCcCHHHHHHcCCCHHH---cC----Ccc
Confidence            99999999999999999874 34443              5578899999999999999999999743   36    688


Q ss_pred             cCCCccCCCccHHHHHHcCCCCCCcEEE-ccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeecc
Q 007076          288 FPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN  366 (619)
Q Consensus       288 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~  366 (619)
                      ++++++|. +.+     .|+ +|+||++ |+||++|+++|+ |..++              +++.+++|||.++...++.
T Consensus       206 ~~~~~~G~-~~~-----~gl-~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~  263 (454)
T TIGR02627       206 HPGNVIGL-WEC-----PQG-NQIPVVAVATHDTASAVVAA-PLQGE--------------NAAYLSSGTWSLMGFESQT  263 (454)
T ss_pred             CCCCeeEE-eec-----ccC-CCCCEEEECCchHHHHHhcC-CCCCC--------------CcEEEEEcHHHHhcccCCC
Confidence            99999996 653     467 7999998 999999999998 55543              6899999999988777776


Q ss_pred             ccccCCcccc-cc-ccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCcc
Q 007076          367 KLFIPGVWGP-FW-SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA  444 (619)
Q Consensus       367 ~~~~~~~~~~-~~-~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~  444 (619)
                      +..++..+.. +. ....++.|...+... ++    |+++.+....         +.+.|+.+.+.++.      +|   
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~~~~~~~---------~~~~~~~l~~~a~~------~p---  320 (454)
T TIGR02627       264 PITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQRVCRER---------DINDLPALIEQAQA------LP---  320 (454)
T ss_pred             CCCCHHHHHhccccccccccEEEeecchh-hh----HHHHHHHhhh---------ccccHHHHHHHhcC------CC---
Confidence            6654432211 11 122356666654443 33    7776553210         12345555544432      22   


Q ss_pred             CCCCceEEcccCCCCCCCCCCCC-CcEe------EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEE
Q 007076          445 ALTEDIHVLPDFHGNRSPIADPK-SKGI------ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL  516 (619)
Q Consensus       445 ~g~~gl~flP~l~G~r~P~~d~~-a~g~------~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I  516 (619)
                      +      |.|++.|++.|+|||+ +++.      |+|++.+|++.|+   +||++|||||.+|++++.|++. +.++++|
T Consensus       321 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i  391 (454)
T TIGR02627       321 A------FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQL  391 (454)
T ss_pred             C------CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEE
Confidence            2      4467789999999995 5544      5999999999996   5699999999999999999885 6788999


Q ss_pred             EEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHh
Q 007076          517 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM  574 (619)
Q Consensus       517 ~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~  574 (619)
                      +++||+++|++|+||+||++|+||++.. .|++++|||++|++++|.|++++++.+.+
T Consensus       392 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~~~  448 (454)
T TIGR02627       392 HIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQIV  448 (454)
T ss_pred             EEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence            9999999999999999999999998765 77999999999999999999998875544

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>PRK10640 rhaB rhamnulokinase; Provisional

Probab=100.00  E-value=8.7e-66  Score=563.57  Aligned_cols=442  Identities=15%  Similarity=0.162  Sum_probs=354.9

Q ss_pred             EEEcCCCCEEE-EE--EeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-ccc--ccCCCCee
Q 007076           70 GLFDESGKLLG-SA--SSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL--VDADGSPV  143 (619)
Q Consensus        70 ~l~d~~g~il~-~~--~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~--vd~~G~pl  143 (619)
                      +-+|.+|+.+. +.  +.++.....+++.+|||+.||+++.++++++...    ..+|.+||||+| +++  ||++|+||
T Consensus         3 ~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~----~~~I~~Igis~q~~~~v~lD~~G~pL   78 (471)
T PRK10640          3 ARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCEE----GIRIDSIGIDTWGVDYVLLDKQGQRV   78 (471)
T ss_pred             eEEcCCCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhhc----CCCccEEEEcCCcccEEEECCCCCCc
Confidence            34665554443 22  3333334478899999999999999999888653    467999999998 554  49999999


Q ss_pred             eecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccceeeechhHHHhh
Q 007076          144 SVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR  221 (619)
Q Consensus       144 ~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~  221 (619)
                               +|+|+|+|.|+.++++++.+..  ++++++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+
T Consensus        79 ---------~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~  149 (471)
T PRK10640         79 ---------GLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYR  149 (471)
T ss_pred             ---------CCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHH
Confidence                     8999999999999999998764  67899999999999999999999999999999999999999999999


Q ss_pred             hcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCCCccCCCccHHH
Q 007076          222 ATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAA  301 (619)
Q Consensus       222 LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~  301 (619)
                      |||+.. ++.|.              +++|++||+++++||+++|+.+||+..+   ||    +++++++++|. ++++ 
T Consensus       150 LTG~~~-~d~s~--------------as~t~l~d~~~~~W~~ell~~~Gi~~~~---LP----~lv~~~~~~G~-v~~~-  205 (471)
T PRK10640        150 LTGKMN-WEYTN--------------ATTTQLVNINSDDWDESLLAWSGAPKAW---FG----RPTHPGNVIGH-WICP-  205 (471)
T ss_pred             HhCCcc-eeecH--------------hhhccccCCCcCCcCHHHHHHcCCCHHH---cC----CCcCCCcccee-eecc-
Confidence            999975 34443              5578899999999999999999999743   36    68899999996 7765 


Q ss_pred             HHHcCCCCCCcEEE-ccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccCCc-cccccc
Q 007076          302 AKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV-WGPFWS  379 (619)
Q Consensus       302 a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~~~-~~~~~~  379 (619)
                         +|  .|+||++ |+||++|+++|+ |...+              +++++++|||+++..++++|..++.. ...+.+
T Consensus       206 ---~g--~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~  265 (471)
T PRK10640        206 ---QG--NEIPVVAVASHDTASAVIAS-PLNDS--------------DAAYLSSGTWSLMGFESQTPFTNDTALAANITN  265 (471)
T ss_pred             ---cC--CCCCEEEeCCCcHHHHhhcc-CCCCC--------------CeEEEEeccHhhhheecCCCcCCHHHHHhccCc
Confidence               35  6899998 699999999998 55533              68999999999988888877654422 111111


Q ss_pred             -cccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCC
Q 007076          380 -AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG  458 (619)
Q Consensus       380 -~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G  458 (619)
                       ...++.|.++..+.  |   +|+++++...+         +...|+.+.+++++      +    ++++|++ +|  .|
T Consensus       266 ~~~~~g~~~~~~~~~--g---~W~~~~~~~~~---------~~~~~~~l~~~a~~------~----~g~~gli-~p--~g  318 (471)
T PRK10640        266 EGGAEGRYRVLKNIM--G---LWLLQRVLQER---------QITDLPALIAATAA------L----PACRFLI-NP--ND  318 (471)
T ss_pred             cCCCCceEEEecchh--H---HHHHHHHHHHh---------ccCCHHHHHHHHHh------C----CCCCcee-CC--Cc
Confidence             23466676665332  3   89998764311         12346666655543      2    2678886 68  69


Q ss_pred             CCCCCCCC-CCcEeEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHH
Q 007076          459 NRSPIADP-KSKGIICGMTLDS------SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ  530 (619)
Q Consensus       459 ~r~P~~d~-~a~g~~~Gl~~~~------~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Q  530 (619)
                      +|.  ||| ++||+|+|++.+|      ++.|+.   ||++||+||.+|++++.|++. +.++++|+++||+++|++|+|
T Consensus       319 er~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~---RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Q  393 (471)
T PRK10640        319 DRF--INPPSMCSEIQAACRETAQPVPESDAELA---RCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQ  393 (471)
T ss_pred             ccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHH
Confidence            994  786 8999998877776      888864   599999999999999999874 677899999999999999999


Q ss_pred             HHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhc---CCeEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 007076          531 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA---AGQVIHPSKDPKVKKYHDAKYLIFRELFEQ  606 (619)
Q Consensus       531 i~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~---~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~  606 (619)
                      |+||++|+||++... |++++|||++|++++|.|++++++ +.+..   ..++|+|  |++  ..++++|..|+++|+.
T Consensus       394 i~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P--~~~--~~~~~~~~~~~~~~~~  466 (471)
T PRK10640        394 LCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTP--NPD--SEIARHVAQFQSLRQT  466 (471)
T ss_pred             HHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcC--CCh--HHHHHHHHHHHHHhcc
Confidence            999999999987664 899999999999999999999886 55555   5789999  665  6788899999999875

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=100.00  E-value=9.4e-47  Score=380.13  Aligned_cols=239  Identities=38%  Similarity=0.688  Sum_probs=212.4

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-c
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (619)
                      |+||||+|||++|++|+|++|+++...+++++... .+|+.||||++||+++++++++++++.+.+..+|.+|+|++| +
T Consensus         1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~   80 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH   80 (245)
T ss_dssp             EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred             CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence            69999999999999999999999999999998765 789999999999999999999999998778899999999998 5


Q ss_pred             cc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccc
Q 007076          134 SL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF  209 (619)
Q Consensus       134 ~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~  209 (619)
                      ++  +|++|+|+         +|+++|+|.|+.++++++++..  +++++.||.++++.++++||+|+++|+|++|++++
T Consensus        81 ~~v~~D~~~~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~  151 (245)
T PF00370_consen   81 GLVLLDKDGKPL---------RPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA  151 (245)
T ss_dssp             EEEEEETTSSBS---------SCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH
T ss_pred             Ccceeccccccc---------cccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhh
Confidence            54  49999999         8999999999999999998864  78899999999999999999999999999999999


Q ss_pred             eeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007076          210 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP  289 (619)
Q Consensus       210 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~  289 (619)
                      +|++++|||.|+|||+.. ++.|              ++++||+||+++++|++++++.+||+..+   ||    +++++
T Consensus       152 ~~~~~~dyl~~~LtG~~~-~d~s--------------~as~tgl~d~~~~~w~~~~l~~~gi~~~~---lP----~i~~~  209 (245)
T PF00370_consen  152 KFLTLSDYLAYKLTGRAA-TDYS--------------NASRTGLYDIRTGQWDEELLEALGIPEEL---LP----EIVPP  209 (245)
T ss_dssp             EEEEHHHHHHHHHHSC-E-EEHH--------------HHCTSSSEETTTTEE-HHHHHHTTSGGGG---SC----EEE-T
T ss_pred             hcccHHHHHHhhcccccc-cccc--------------chhccccccccccccCHHHHHhhCCChhh---CC----cEecC
Confidence            999999999999999874 2333              25678899999999999999999999854   36    78899


Q ss_pred             CCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhc
Q 007076          290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG  326 (619)
Q Consensus       290 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg  326 (619)
                      |+++|+ +++++|+++||++|+||++|+||++|+++|
T Consensus       210 g~~~G~-~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG  245 (245)
T PF00370_consen  210 GEIIGT-LTPEAAKELGLPEGTPVIAGGGDQAAAALG  245 (245)
T ss_dssp             TSEEEE-EEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred             CCeeEE-ECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence            999997 999999999999999999999999999986

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.8e-43  Score=355.34  Aligned_cols=487  Identities=17%  Similarity=0.143  Sum_probs=357.7

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeeccc----cc-CCC-------ccccCHH-HHHHHHHHHHHHHHHHcCCCC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WK-EGD-------CIEQSST-DIWHAICAAVDSACSLANVDG  121 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~----~~-~~g-------~~e~dp~-~~~~~~~~~l~~~~~~~~~~~  121 (619)
                      ..+||+|++|+.+|++++|++.+|+++....+..    +. .+|       ..-..|- .|.+|+.-++.+ +.+.+.+.
T Consensus         9 ~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~k-l~~~~~d~   87 (545)
T KOG2531|consen    9 RSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDK-LREAGFDL   87 (545)
T ss_pred             ceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHH-HHHcCCCH
Confidence            3599999999999999999999999998777642    21 121       2233455 666665555544 45567777


Q ss_pred             CCEEEEEEcCc-cccc--cCCC-CeeeecCC----------CCCCccceeecccccHHHHHHHHccc---hhHHhhhCCC
Q 007076          122 EEVKGVGFAAT-CSLV--DADG-SPVSVSWN----------GDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGA  184 (619)
Q Consensus       122 ~~I~aIgis~~-~~~v--d~~G-~pl~~~~~----------~~~~~p~i~W~D~R~~~~~~~l~~~~---~~~~~~tG~~  184 (619)
                      .+|.||+-++| ||.|  .+.+ +.|..+-.          .+.......|+|..+..+|+++....   .++.++||.+
T Consensus        88 ~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGSR  167 (545)
T KOG2531|consen   88 SKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGSR  167 (545)
T ss_pred             HHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcch
Confidence            89999999887 7754  3332 22322200          12223455799999999999998874   6788999999


Q ss_pred             CCCCChHHHHHHHHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHH
Q 007076          185 VSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDE  264 (619)
Q Consensus       185 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~  264 (619)
                      .+..|+.++|+-+.+.+||+|+++.++-.+++|+...|-|..+..|.|++|              +++|+||+++.||.+
T Consensus       168 Ay~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgs--------------GMNL~dIr~k~ws~~  233 (545)
T KOG2531|consen  168 AYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGS--------------GMNLLDIRKKKWSKA  233 (545)
T ss_pred             hhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceeccccc--------------CchHHHHhhhhhhHH
Confidence            999999999999999999999999999999999999999998766777654              446889999999999


Q ss_pred             HHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhh
Q 007076          265 FWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEE  344 (619)
Q Consensus       265 ll~~~gi~~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g  344 (619)
                      +|+.+-  +.+.   .+|+ ..+++-.+.|+ |.+.+.+++|++++|.|+.-.||+++++.|. -..             
T Consensus       234 ~L~~~a--pdL~---~KL~-~pv~~~~~~G~-I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL-~l~-------------  292 (545)
T KOG2531|consen  234 LLDACA--PDLE---EKLG-KPVPPMSIAGT-ISKYFVKRYGFPPDCKVVPSTGDNPSSLAGL-PLR-------------  292 (545)
T ss_pred             HHhhhC--hhHH---HHhC-CCCCccccccc-hhhhhHhhcCCCCCCEEEecCCCChHHhhCc-ccc-------------
Confidence            999975  2233   3444 45677789997 9999999999999999999999999999987 332             


Q ss_pred             cccCeEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHH
Q 007076          345 AICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLF  424 (619)
Q Consensus       345 ~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~  424 (619)
                        ++++.+|+|||..+...++++.+.+.. ..|++.+.+..|+.+-+..||+.+-+-+++..             ...+|
T Consensus       293 --~~dl~iSLGTSdTv~m~t~~~~p~~eg-Hvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~-------------~~~sW  356 (545)
T KOG2531|consen  293 --PGDLLISLGTSDTVFMVTKEYHPSPEG-HVFCHPTDPNHYMGMLCFKNGSLTRERIRNES-------------ANGSW  356 (545)
T ss_pred             --CCceEEEecCcceEEEEcCCCCCCCCc-ceeccCCCccceEEEEEecCChHHHHHHhhcc-------------cCCCH
Confidence              368999999999999999988766643 34666677889999999999888877776532             23578


Q ss_pred             HHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCC-CCcEeEE---------cCCCCCCHHHHHHHHHHHHHH
Q 007076          425 ELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADP-KSKGIIC---------GMTLDSSEKQLALLYLATVQG  494 (619)
Q Consensus       425 ~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~-~a~g~~~---------Gl~~~~~~~~l~~~~rAvlEg  494 (619)
                      +.|++.+...+         .|.+|.+=+=|=.+|-.|-.-. ..|=.+-         ++....+|..-   .||++||
T Consensus       357 d~Fne~L~~t~---------~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e---~rAlvEg  424 (545)
T KOG2531|consen  357 DKFNEILDSTP---------SGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEVAKFSDPEIE---ARALVEG  424 (545)
T ss_pred             HHHHHHhccCc---------CCCCCceeEecccccccCCCCccceEEEecCCccchhhcccccCCCchHH---HHHHHHH
Confidence            88988776532         4556543221223455551100 0010111         33333335554   4699999


Q ss_pred             HHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccC-CHH----H
Q 007076          495 IAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-SLI----E  569 (619)
Q Consensus       495 iaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~-~~~----~  569 (619)
                      .++..|...+.|.-...+.++|+++||.|+|+.+.|++|||||.||++.+..+++|+|+|+-|+++.-... ...    .
T Consensus       425 Q~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~  504 (545)
T KOG2531|consen  425 QFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFSN  504 (545)
T ss_pred             hHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhcccccccccee
Confidence            99999988877653334789999999999999999999999999999999999999999999998752111 000    0


Q ss_pred             HHH--Hh--hcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHH
Q 007076          570 AMK--AM--NAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ  607 (619)
Q Consensus       570 a~~--~~--~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~  607 (619)
                      -..  .+  .+.+...+|  ++...+.|..+.++|.++.+.+
T Consensus       505 ~~~~~~~~p~~~~L~~~p--~~~~~e~Y~~ll~~~~e~e~~l  544 (545)
T KOG2531|consen  505 KTNYLSLTPSKLELACEP--DSANWEIYGPLLKRLSELEDTL  544 (545)
T ss_pred             eccccccCCccceeeecC--CcchHHHHHHHHHHHHHHHHhh
Confidence            000  01  123445678  7788889999988888877653

>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=99.98  E-value=7.6e-32  Score=262.69  Aligned_cols=196  Identities=34%  Similarity=0.561  Sum_probs=158.2

Q ss_pred             EEEEecccceeeeeeccccc-cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076          350 MVLVCGTSTCHMAVSRNKLF-IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  428 (619)
Q Consensus       350 ~~~~~GTs~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~  428 (619)
                      +.+++|||+++...+++|+. .++.+.++.++..++.|+++++.+++|.+++|+++.+.....+.+     ..+.++.+.
T Consensus         1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~-----~~~~~~~~~   75 (198)
T PF02782_consen    1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSD-----EEEIYEDLA   75 (198)
T ss_dssp             EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSS-----TTHHHHHHH
T ss_pred             CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhh-----hhhccchHH
Confidence            35799999999998888873 344555554444578899999999999999999998621111000     000122222


Q ss_pred             HHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007076          429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA  508 (619)
Q Consensus       429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~  508 (619)
                      ...+..     .   ++++++++|+|+|.|+|+|+||++++|+|+|++.+|++.++   +||++||++|.++++++.|++
T Consensus        76 ~~~~~~-----~---~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~---~rAv~Egia~~~~~~~~~l~~  144 (198)
T PF02782_consen   76 ELEAAA-----S---PPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADL---ARAVLEGIAFSLRQILEELEE  144 (198)
T ss_dssp             HHHHHH-----T---SSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhh-----c---cCcccceeeeeccccCcccccccccccccccCCcccCHHHH---HHHHHHhHHHHHHHhhhhccc
Confidence            211111     1   24689999999999999999999999999999999998886   569999999999999999998


Q ss_pred             C-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhc
Q 007076          509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA  561 (619)
Q Consensus       509 ~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~  561 (619)
                      . +.++++|+++||+++|++|+|++||++|+||++++..|++|+|||++|++++
T Consensus       145 ~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~  198 (198)
T PF02782_consen  145 LTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV  198 (198)
T ss_dssp             HHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred             cccccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence            7 8999999999999999999999999999999999999999999999999874

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=99.24  E-value=1.5e-09  Score=109.53  Aligned_cols=75  Identities=21%  Similarity=0.360  Sum_probs=61.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-EEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccch
Q 007076          474 GMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLL  551 (619)
Q Consensus       474 Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~al  551 (619)
                      .+....++++++   +++++++++.+..++..+     .++ +|+++||+++|+.|.|.+++.++.||.+++.++ .+|+
T Consensus       172 ~l~~g~~~~di~---~~~~~~va~~i~~~~~~~-----~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~Al  243 (248)
T TIGR00241       172 LLAAGVKKEDIL---AGVYESIAERVAEMLQRL-----KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAV  243 (248)
T ss_pred             HHHCCCCHHHHH---HHHHHHHHHHHHHHHhhc-----CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHH
Confidence            344455677765   599999999999866533     244 799999999999999999999999999999885 8999


Q ss_pred             HHHHH
Q 007076          552 GAAIL  556 (619)
Q Consensus       552 GAAll  556 (619)
                      |||++
T Consensus       244 GaAl~  248 (248)
T TIGR00241       244 GAALL  248 (248)
T ss_pred             HHHhC
Confidence            99974

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=98.63  E-value=3.9e-07  Score=94.59  Aligned_cols=76  Identities=20%  Similarity=0.276  Sum_probs=57.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh-----CCceeecCCCC-cc
Q 007076          476 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-----GCPIILPRENE-SV  549 (619)
Q Consensus       476 ~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl-----g~pV~~~~~~e-~~  549 (619)
                      .....++|++.   ++..+++-.+..++.   +.+...+.|.++||.++|+.+.+.+.+.+     +.+|.+++.++ .+
T Consensus       351 a~G~~reDIaA---GL~~SIA~Rv~s~l~---r~~~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~G  424 (432)
T TIGR02259       351 ALGDKREDILA---GLHRAIILRAISIIS---RSGGITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTG  424 (432)
T ss_pred             HCCCCHHHHHH---HHHHHHHHHHHHHHh---cccCCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHH
Confidence            34456778764   888888865554443   33222357999999999999999999999     57888887665 78


Q ss_pred             chHHHHHH
Q 007076          550 LLGAAILG  557 (619)
Q Consensus       550 alGAAllA  557 (619)
                      |+|||+.|
T Consensus       425 ALGAAL~a  432 (432)
T TIGR02259       425 ALGASEFA  432 (432)
T ss_pred             HHHHHHhC
Confidence            99999875

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>PRK09698 D-allose kinase; Provisional

Probab=98.01  E-value=4.7e-05  Score=79.15  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=59.7

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|++|||+|.|+++++++|.+|+++.+.+.+++.       ..+++. .+.+.+.+++++++.+   .+|.+|||+. +|
T Consensus         4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-------~~~~~~-~~~l~~~i~~~~~~~~---~~i~gigia~-pG   71 (302)
T PRK09698          4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-------VIAPDL-VSGLGEMIDEYLRRFN---ARCHGIVMGF-PA   71 (302)
T ss_pred             cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-------ccchHH-HHHHHHHHHHHHHHcC---CCeeEEEEeC-Cc
Confidence            6799999999999999999999999887776651       223343 7777888888877642   5799999976 88


Q ss_pred             cccCC-CCee
Q 007076          135 LVDAD-GSPV  143 (619)
Q Consensus       135 ~vd~~-G~pl  143 (619)
                      ++|.+ |..+
T Consensus        72 ~vd~~~g~i~   81 (302)
T PRK09698         72 LVSKDRRTVI   81 (302)
T ss_pred             ceeCCCCEEE
Confidence            99876 4444

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=98.00  E-value=5e-05  Score=79.39  Aligned_cols=77  Identities=25%  Similarity=0.334  Sum_probs=59.9

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .+++|||||.|++|++++|.+|+++...+.+++       ...+.+.+.+.+.+.+++++...+ ...++.+||+++ ++
T Consensus         6 ~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi~~-pg   76 (314)
T COG1940           6 MTVLGIDIGGTKIKVALVDLDGEILLRERIPTP-------TPDPEEAILEAILALVAELLKQAQ-GRVAIIGIGIPG-PG   76 (314)
T ss_pred             cEEEEEEecCCEEEEEEECCCCcEEEEEEEecC-------CCCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEecc-ce
Confidence            579999999999999999999999999988887       233345888888899988887653 334577777755 66


Q ss_pred             cccCCC
Q 007076          135 LVDADG  140 (619)
Q Consensus       135 ~vd~~G  140 (619)
                      .+|...
T Consensus        77 ~~~~~~   82 (314)
T COG1940          77 DVDNGT   82 (314)
T ss_pred             eccCCc
Confidence            665544

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=97.94  E-value=5.8e-05  Score=76.52  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=56.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      ++|||||.|++|++++|.+|+++.+.+.+++        ..+++++.+.+.+++++....    ...+.+|||+. +|++
T Consensus         2 ~lgidiggt~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~----~~~~~gIgv~~-pG~v   68 (256)
T PRK13311          2 YYGFDMGGTKIELGVFDENLQRIWHKRVPTP--------REDYPQLLQILRDLTEEADTY----CGVQGSVGIGI-PGLP   68 (256)
T ss_pred             EEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhh----cCCCceEEEEe-cCcE
Confidence            7999999999999999999999988777665        346777888887777766432    23345888876 8889


Q ss_pred             cCC-CCee
Q 007076          137 DAD-GSPV  143 (619)
Q Consensus       137 d~~-G~pl  143 (619)
                      |.+ |...
T Consensus        69 d~~~g~i~   76 (256)
T PRK13311         69 NADDGTVF   76 (256)
T ss_pred             ECCCCEEE
Confidence            876 5543

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=97.93  E-value=6.2e-05  Score=78.83  Aligned_cols=87  Identities=28%  Similarity=0.433  Sum_probs=68.5

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccccc
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVD  137 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~vd  137 (619)
                      ||||+|.|+++++++|.+|+++...+.+.+         .+++++.+.+.+.+++++++.+....+|.+|||+. +|++|
T Consensus         1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~-pG~vd   70 (318)
T TIGR00744         1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD---------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGA-PGPVN   70 (318)
T ss_pred             CEEEeCCCEEEEEEECCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEec-ccccc
Confidence            589999999999999999999887665443         36788899999999999887766667899999976 88898


Q ss_pred             CC-CCeeeecCCCCCCccceeecccc
Q 007076          138 AD-GSPVSVSWNGDSRRNIIVWMDHR  162 (619)
Q Consensus       138 ~~-G~pl~~~~~~~~~~p~i~W~D~R  162 (619)
                      .+ |....        .|.+.|.+..
T Consensus        71 ~~~g~~~~--------~~~~~w~~~~   88 (318)
T TIGR00744        71 RQRGTVYF--------AVNLDWKQEP   88 (318)
T ss_pred             CCCCEEEe--------cCCCCCCCCC
Confidence            65 66443        4555686643

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []

Probab=97.82  E-value=8.2e-05  Score=70.91  Aligned_cols=87  Identities=24%  Similarity=0.399  Sum_probs=69.5

Q ss_pred             EEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccccC
Q 007076           59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVDA  138 (619)
Q Consensus        59 gIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~vd~  138 (619)
                      |||||+++++++++|.+|+++.+.+.+++         .+++++.+.+.+.++++..+.+.    . +|||+. +|+||.
T Consensus         1 gidig~~~i~~~l~d~~g~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~----~-gIgi~~-pG~v~~   65 (179)
T PF00480_consen    1 GIDIGGTSIRIALVDLDGEIIYSESIPTP---------TSPEELLDALAELIERLLADYGR----S-GIGISV-PGIVDS   65 (179)
T ss_dssp             EEEEESSEEEEEEEETTSCEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHTC----E-EEEEEE-SSEEET
T ss_pred             CEEECCCEEEEEEECCCCCEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhccc----c-cEEEec-cccCcC
Confidence            79999999999999999999998877764         67899999999999999887532    2 888865 889977


Q ss_pred             C-CCeeeecCCCCCCccceeecccccHHHHH
Q 007076          139 D-GSPVSVSWNGDSRRNIIVWMDHRAVKQAE  168 (619)
Q Consensus       139 ~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~  168 (619)
                      + |..+.        .|...|.+..-.+..+
T Consensus        66 ~~g~i~~--------~~~~~~~~~~l~~~l~   88 (179)
T PF00480_consen   66 EKGRIIS--------SPNPGWENIPLKEELE   88 (179)
T ss_dssp             TTTEEEE--------CSSGTGTTCEHHHHHH
T ss_pred             CCCeEEe--------cCCCCcccCCHHHHhh
Confidence            6 56664        5777788866554443

This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....

>PRK09557 fructokinase; Reviewed

Probab=97.81  E-value=0.00013  Score=75.72  Aligned_cols=74  Identities=20%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      .||||+|.|+++++++|.+|+++.+.+.+++        .++++++.+.+.+.++++....    ..+.+|||+. +|+|
T Consensus         2 ~lgidig~t~~~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~-pG~v   68 (301)
T PRK09557          2 RIGIDLGGTKIEVIALDDAGEELFRKRLPTP--------RDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI-PGSI   68 (301)
T ss_pred             EEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC-cccC
Confidence            7999999999999999999999987766654        2467788888888887776542    3567899966 8899


Q ss_pred             cCC-CCee
Q 007076          137 DAD-GSPV  143 (619)
Q Consensus       137 d~~-G~pl  143 (619)
                      |.+ |..+
T Consensus        69 d~~~g~i~   76 (301)
T PRK09557         69 SPYTGLVK   76 (301)
T ss_pred             cCCCCeEE
Confidence            865 6654

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=97.81  E-value=0.00013  Score=75.95  Aligned_cols=74  Identities=22%  Similarity=0.336  Sum_probs=57.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      ++|||||.|+++++++|.+|+++.+.+.+++        ..+++++.+.+.+.++++....    ..+.+|||+. +|+|
T Consensus         2 ~lgidig~t~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~~igia~-pG~v   68 (303)
T PRK13310          2 YYGFDIGGTKIELGVFNEKLELQWEERVPTP--------RDSYDAFLDAVCELVAEADQRF----GCKGSVGIGI-PGMP   68 (303)
T ss_pred             eEEEEeCCCcEEEEEECCCCcEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCcceEEEeC-CCcc
Confidence            7999999999999999999999987766654        3467888888888888775432    2345788876 8899


Q ss_pred             cCC-CCee
Q 007076          137 DAD-GSPV  143 (619)
Q Consensus       137 d~~-G~pl  143 (619)
                      |.+ |...
T Consensus        69 d~~~g~~~   76 (303)
T PRK13310         69 ETEDGTLY   76 (303)
T ss_pred             cCCCCEEe
Confidence            865 6543

>PRK13317 pantothenate kinase; Provisional

Probab=97.60  E-value=0.0017  Score=66.27  Aligned_cols=91  Identities=14%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             CCCCCcEeEEc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEec-CCcCCHHHHHHHHhhh-
Q 007076          464 ADPKSKGIICG-----MTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACG-GLAKNPLFLQQHADII-  536 (619)
Q Consensus       464 ~d~~a~g~~~G-----l~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~G-G~a~s~~~~Qi~Advl-  536 (619)
                      ...+.+.+.||     +.....++|+++   +++..++..+..+.-.+.+. ..+++|+++| |.++|+.+++.+++.+ 
T Consensus       173 l~i~s~csvFakv~~l~~~g~~~eDIaa---sl~~~v~~~I~~lA~~~ar~-~~~~~Ivf~G~gla~n~~l~~~l~~~l~  248 (277)
T PRK13317        173 IPGDLTASNFGKVLHHLDSEFTSSDILA---GVIGLVGEVITTLSIQAARE-KNIENIVYIGSTLTNNPLLQEIIESYTK  248 (277)
T ss_pred             CCCceeEehhhhhhhhhccCCCHHHHHH---HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECcccccCHHHHHHHHHHHh
Confidence            34566666655     334456888765   99999988777664433332 2446899999 6899999999999998 


Q ss_pred             --CCceeecCCCC-ccchHHHHHHH
Q 007076          537 --GCPIILPRENE-SVLLGAAILGA  558 (619)
Q Consensus       537 --g~pV~~~~~~e-~~alGAAllA~  558 (619)
                        +.++.+++.++ .+|+|||+.|.
T Consensus       249 ~~~~~~~~p~~~~~~gAlGAaL~a~  273 (277)
T PRK13317        249 LRNCTPIFLENGGYSGAIGALLLAT  273 (277)
T ss_pred             cCCceEEecCCCchhHHHHHHHHhh
Confidence              78888887655 88999999874

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=97.30  E-value=0.00078  Score=57.40  Aligned_cols=61  Identities=15%  Similarity=0.096  Sum_probs=42.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      +||||+|+|.+|++++|.+|+++...+.+..         .+.+.+++.+.+.+    ++     .++.+|||+. +|.+
T Consensus         3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~---------~~~~~~~~~l~~~i----~~-----~~~~~i~Ig~-pg~v   63 (99)
T smart00732        3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPR---------TNKEADAARLKKLI----KK-----YQPDLIVIGL-PLNM   63 (99)
T ss_pred             EEEEccCCCeEEEEEECCCCCEecCEEEEEe---------cCcchHHHHHHHHH----HH-----hCCCEEEEeC-CcCC
Confidence            7999999999999999999998876655432         12344555554444    33     2466888865 6665

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=97.26  E-value=0.0017  Score=67.15  Aligned_cols=68  Identities=21%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      ++|||||.|+++++++|.+|+++.+.+.+++       ...+++++.+.+.+.++++..       ++.+|||+. +|+|
T Consensus         3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~-------~~~~igi~~-pG~v   67 (291)
T PRK05082          3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP-------ASQTPEALRQALSALVSPLQA-------QADRVAVAS-TGII   67 (291)
T ss_pred             EEEEEECCCEEEEEEEcCCCcEEEEEEecCC-------CCCCHHHHHHHHHHHHHHhhh-------cCcEEEEeC-cccc
Confidence            7999999999999999999999987776665       134567777777777766532       356889876 8888


Q ss_pred             cCC
Q 007076          137 DAD  139 (619)
Q Consensus       137 d~~  139 (619)
                      |..
T Consensus        68 d~~   70 (291)
T PRK05082         68 NDG   70 (291)
T ss_pred             cCC
Confidence            743

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=97.15  E-value=0.00098  Score=67.84  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCC-CCccchHHH
Q 007076          477 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRE-NESVLLGAA  554 (619)
Q Consensus       477 ~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~-~e~~alGAA  554 (619)
                      ....++|++.   ++.++++-.+.   ..+++.++ -+.|.++||.++|+.+.+.+.+.|+++|. ++.. ....|+|||
T Consensus       211 ~G~~~edI~a---Gl~~sia~rv~---~~~~~~~i-~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAA  283 (293)
T TIGR03192       211 AGYTKNMVIA---AYCQAMAERVV---SLLERIGV-EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAA  283 (293)
T ss_pred             CCCCHHHHHH---HHHHHHHHHHH---HHhcccCC-CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHH
Confidence            3445777654   88888885543   33333332 24699999999999999999999999998 4443 348899999


Q ss_pred             HHHHh
Q 007076          555 ILGAV  559 (619)
Q Consensus       555 llA~~  559 (619)
                      ++|..
T Consensus       284 L~A~~  288 (293)
T TIGR03192       284 LFGYT  288 (293)
T ss_pred             HHHHH
Confidence            99853

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>PRK00292 glk glucokinase; Provisional

Probab=97.15  E-value=0.0012  Score=69.11  Aligned_cols=68  Identities=24%  Similarity=0.266  Sum_probs=45.1

Q ss_pred             CeEEEEEcCCcceEEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      +|+||||||+|++|++++| .+++++...+.+++          +.    +.+.+.+.+++++.  ...++.+|||+. +
T Consensus         2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~----------~~----~~~~~~l~~~l~~~--~~~~~~gigIg~-p   64 (316)
T PRK00292          2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA----------DY----PSLEDAIRAYLADE--HGVQVRSACFAI-A   64 (316)
T ss_pred             ceEEEEEcCccceEEEEEecCCCceeeeEEEecC----------CC----CCHHHHHHHHHHhc--cCCCCceEEEEE-e
Confidence            4799999999999999999 45666666555443          11    12444455555431  123688899976 8


Q ss_pred             ccccCC
Q 007076          134 SLVDAD  139 (619)
Q Consensus       134 ~~vd~~  139 (619)
                      |+||.+
T Consensus        65 G~vd~~   70 (316)
T PRK00292         65 GPVDGD   70 (316)
T ss_pred             CcccCC
Confidence            899754

>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.0014  Score=66.34  Aligned_cols=72  Identities=29%  Similarity=0.343  Sum_probs=56.1

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp-~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (619)
                      |+++|+||||-|+|+++++|.|.+|+++......-..      ...++ ++-+..+.+++.+++.+++.++++|..+..
T Consensus         2 ~~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpAN------~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~a   74 (301)
T COG2971           2 EPMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPAN------IQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIVA   74 (301)
T ss_pred             CCccEEEEEccCCcceEEEEEcCCCcEEEEeccCCce------ecccchHHHHHHHHHHHHHHHHhcCCCHHHhCceee
Confidence            3457999999999999999999999999876443211      23445 888899999999999888877777655433

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=97.05  E-value=0.0019  Score=65.79  Aligned_cols=64  Identities=23%  Similarity=0.238  Sum_probs=45.7

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      +++|||+|+|++|++|+|+ ++++.....++.         .+|.   +...+++++++++.+....+|..+++++.
T Consensus        33 ~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg---------~~~~---~~a~~~l~~~l~~~g~~~~~v~~~~~TGy   96 (293)
T TIGR03192        33 ITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG---------NNSP---DSAKNALQGIMDKIGMKLEDINYVVGTGY   96 (293)
T ss_pred             EEEEEEeCchhEEEEEEeC-CEEEEEEeecCC---------CCHH---HHHHHHHHHHHHHcCCcccceEEEEEECc
Confidence            6999999999999999994 566655444332         2332   24566777777777766678998888774

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=97.03  E-value=0.0024  Score=67.67  Aligned_cols=74  Identities=18%  Similarity=0.308  Sum_probs=57.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHHHHHH
Q 007076          479 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG  557 (619)
Q Consensus       479 ~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGAAllA  557 (619)
                      ..++|++.   ++..+++-++..  ..+++.++ -+.|+++||.++|+.+...+.+.+|.+|.+++.++ .+|+|||++|
T Consensus       328 ~~~eDIaA---Gl~~SIa~rv~~--~l~~~~~i-~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A  401 (404)
T TIGR03286       328 ASPEDVAA---AACHSVAEQVYE--QQLQEIDV-REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA  401 (404)
T ss_pred             CCHHHHHH---HHHHHHHHHHHH--HHhhcCCC-CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence            45788765   899998865553  12333322 24599999999999999999999999999998776 7799999997


Q ss_pred             H
Q 007076          558 A  558 (619)
Q Consensus       558 ~  558 (619)
                      .
T Consensus       402 ~  402 (404)
T TIGR03286       402 S  402 (404)
T ss_pred             c
Confidence            3

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.99  E-value=0.0027  Score=63.73  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-Cc----eeecCCC-Cccch
Q 007076          478 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CP----IILPREN-ESVLL  551 (619)
Q Consensus       478 ~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~p----V~~~~~~-e~~al  551 (619)
                      ...++|++.   ++..+++-.+..++.   +.+...++|.++||.++|+.+.+.+.+.++ .+    |.+++.+ ...|+
T Consensus       183 G~~~edI~a---Gl~~sia~r~~~~~~---~~~~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAl  256 (262)
T TIGR02261       183 GISAPNILK---GIHESMADRLAKLLK---SLGALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAI  256 (262)
T ss_pred             CCCHHHHHH---HHHHHHHHHHHHHHh---ccCCCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHH
Confidence            345777654   899998865544443   433334569999999999999999999884 23    3333333 47799


Q ss_pred             HHHHHH
Q 007076          552 GAAILG  557 (619)
Q Consensus       552 GAAllA  557 (619)
                      |||++|
T Consensus       257 GAAl~~  262 (262)
T TIGR02261       257 GAALWG  262 (262)
T ss_pred             HHHHcC
Confidence            999874

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=96.83  E-value=0.0033  Score=66.58  Aligned_cols=19  Identities=16%  Similarity=0.149  Sum_probs=11.6

Q ss_pred             EcccccchhHHHHHHHHhh
Q 007076          388 TEGGQSATGALLDYIIENH  406 (619)
Q Consensus       388 ~~g~~~~~G~~l~W~~~~~  406 (619)
                      +.-|...+|..|+-+.+.+
T Consensus       269 NdkCAAGTGrFLE~~A~~L  287 (404)
T TIGR03286       269 GGICAGASGRFLEMTAKRL  287 (404)
T ss_pred             cCcccccCcHHHHHHHHHh
Confidence            3345556788887665544

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>PRK13410 molecular chaperone DnaK; Provisional

Probab=96.83  E-value=0.0033  Score=72.35  Aligned_cols=81  Identities=22%  Similarity=0.248  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCCCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~~e~~alGAAl  555 (619)
                      ++.++..+...+++-+.-.+++   .|++.+.   .++.|+++||+++.|.+.+++.++||.++. .....|+.|+|||+
T Consensus       296 tR~~FE~l~~~l~~r~~~~i~~---~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi  372 (668)
T PRK13410        296 DRKQFESLCGDLLDRLLRPVKR---ALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAI  372 (668)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH---HHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHH
Confidence            4555544444444444333333   3344454   578999999999999999999999998654 34566799999999


Q ss_pred             HHHhhccc
Q 007076          556 LGAVAAKR  563 (619)
Q Consensus       556 lA~~~~G~  563 (619)
                      .|+...+.
T Consensus       373 ~aa~ls~~  380 (668)
T PRK13410        373 QAGILAGE  380 (668)
T ss_pred             HHHhhccc
Confidence            99986664

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=96.83  E-value=0.0027  Score=64.95  Aligned_cols=68  Identities=24%  Similarity=0.332  Sum_probs=52.4

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      ||||.|+|++|++|+|.+|+++.+....-..     ....+.+...+.+.+++.+++++.+....+|..+.++
T Consensus         1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n-----~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g   68 (271)
T PF01869_consen    1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN-----YNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIG   68 (271)
T ss_dssp             EEEEECSSEEEEEEEETTSEEEEEEEES-TT-----HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             CEEeeChheeeeEEEeCCCCEEEEEEeCCCC-----CCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeee
Confidence            7999999999999999999988766443211     1224567888899999999999888777777776553

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=96.82  E-value=0.0036  Score=64.87  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=56.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHH
Q 007076          476 TLDSSEKQLALLYLATVQGIAYGTRHIVE-HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGA  553 (619)
Q Consensus       476 ~~~~~~~~l~~~~rAvlEgiaf~~~~~l~-~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGA  553 (619)
                      ....+++|+..   ++.++++-++   +. .+.+..+. +.|++.||.+.|..+...+.+.+|++|.+|+.++ ..|+||
T Consensus       312 ~~G~~~EdI~A---Gl~~Sv~~~v---~~~~~~~~~i~-~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGA  384 (396)
T COG1924         312 AEGASPEDILA---GLAYSVAENV---AEKVIKRVDIE-EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGA  384 (396)
T ss_pred             HcCCCHHHHHH---HHHHHHHHHH---HHHHhhccCCC-CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHH
Confidence            34456677654   7777777433   33 23332222 2399999999999999999999999999998666 789999


Q ss_pred             HHHHHh
Q 007076          554 AILGAV  559 (619)
Q Consensus       554 AllA~~  559 (619)
                      |++|..
T Consensus       385 AL~a~~  390 (396)
T COG1924         385 ALIAKE  390 (396)
T ss_pred             HHHHhh
Confidence            999853

>CHL00094 dnaK heat shock protein 70

Probab=96.80  E-value=0.0036  Score=71.69  Aligned_cols=61  Identities=21%  Similarity=0.275  Sum_probs=49.3

Q ss_pred             HHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHHHhhccccC
Q 007076          505 HCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGAVAAKRYS  565 (619)
Q Consensus       505 ~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA~~~~G~~~  565 (619)
                      .|++.++   .++.|+++||.++.|.+.++++++||.++... ...|+.|+|||+.|+...|.++
T Consensus       318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~  382 (621)
T CHL00094        318 ALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK  382 (621)
T ss_pred             HHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence            3444454   67899999999999999999999999877543 4566899999999998776543

>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family

Probab=96.70  E-value=0.0035  Score=59.63  Aligned_cols=75  Identities=27%  Similarity=0.419  Sum_probs=58.4

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc---c
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC---S  134 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~---~  134 (619)
                      ||||+|+|.+-++++|.+.+++...+.++.           |++....+.+++++++...+.++.+|..|-++++.   .
T Consensus         2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt-----------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~~tNA   70 (176)
T PF05378_consen    2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT-----------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTVATNA   70 (176)
T ss_pred             eeEecCCCcEEEEEEeCCCCEEEEEEeCCC-----------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHHHHHH
Confidence            799999999999999988788888777653           45566778888888888777778899999998863   2


Q ss_pred             cccCCCCee
Q 007076          135 LVDADGSPV  143 (619)
Q Consensus       135 ~vd~~G~pl  143 (619)
                      ++..+|.++
T Consensus        71 l~e~~g~~v   79 (176)
T PF05378_consen   71 LLERKGARV   79 (176)
T ss_pred             HHhccCCCc
Confidence            445555444

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=96.69  E-value=0.0042  Score=62.40  Aligned_cols=67  Identities=21%  Similarity=0.272  Sum_probs=44.6

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCE-EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGKL-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~i-l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +++|||+|+|++|++|+|.+++. .......++.      ...+|   .+...+++++++++.++...+|..|+.++
T Consensus         2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~~TG   69 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRI------RQRDP---FKLAEDAYDDLLEEAGLAAADVAYCATTG   69 (262)
T ss_pred             eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecC------CCCCH---HHHHHHHHHHHHHHcCCChhheEEEEEEC
Confidence            58999999999999999965542 2222222221      02233   23456677788777776667899888876

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X

Probab=96.61  E-value=0.006  Score=65.46  Aligned_cols=76  Identities=22%  Similarity=0.226  Sum_probs=50.9

Q ss_pred             eEEEEEcCCcceEEEEEc-CCCCEEEEEEeeccccc-CCC------ccc------cCHHHHHHHHHHHHHHHHHHcCCCC
Q 007076           56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGD------CIE------QSSTDIWHAICAAVDSACSLANVDG  121 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~-~~g------~~e------~dp~~~~~~~~~~l~~~~~~~~~~~  121 (619)
                      |-++||||||.+.+.++| .+|++++..+...|... ..+      +..      +=-..+.+.+.+++++++++.++++
T Consensus         2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~   81 (412)
T PF14574_consen    2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP   81 (412)
T ss_dssp             EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred             EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            678999999999999999 58999999988877542 221      112      1123455666666667777778889


Q ss_pred             CCEEEEEEcC
Q 007076          122 EEVKGVGFAA  131 (619)
Q Consensus       122 ~~I~aIgis~  131 (619)
                      ++|..|.|++
T Consensus        82 ~~I~~i~i~G   91 (412)
T PF14574_consen   82 EDIYEIVIVG   91 (412)
T ss_dssp             GGEEEEEEEE
T ss_pred             HHeEEEEEEe
Confidence            9999999987

>PRK13321 pantothenate kinase; Reviewed

Probab=96.61  E-value=0.0056  Score=62.06  Aligned_cols=63  Identities=25%  Similarity=0.422  Sum_probs=44.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|+||||.|++|.++||.+ +++...+.+++       ...+++++...+.+.++    +.+.+..+|.+|++++
T Consensus         2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-------~~~~~~~~~~~l~~l~~----~~~~~~~~i~~i~vss   64 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-------KSRTSDELGILLLSLFR----HAGLDPEDIRAVVISS   64 (256)
T ss_pred             EEEEEECCCeEEEEEEECC-EEEEEEEEecC-------CCCCHHHHHHHHHHHHH----HcCCChhhCCeEEEEe
Confidence            6899999999999999944 77776666655       23455666666555554    3333445799999976

>PRK12408 glucokinase; Provisional

Probab=96.59  E-value=0.003  Score=66.64  Aligned_cols=68  Identities=21%  Similarity=0.228  Sum_probs=42.0

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCE------EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076           56 VFLGVDVGTGSARAGLFDESGKL------LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~i------l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (619)
                      ++|++|||+|++|.+++|++|++      +...+.+++          +.    +.+.+.+++++++    ..++.+|||
T Consensus        17 ~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~~~~~t~----------~~----~~~~~~i~~~~~~----~~~~~~igI   78 (336)
T PRK12408         17 SFVAADVGGTHVRVALVCASPDAAKPVELLDYRTYRCA----------DY----PSLAAILADFLAE----CAPVRRGVI   78 (336)
T ss_pred             cEEEEEcChhhhheeEEeccCCccccccccceeEecCC----------Cc----cCHHHHHHHHHhc----CCCcCEEEE
Confidence            48999999999999999987763      333222222          11    1233445555543    135788888


Q ss_pred             cCcccc-ccCCCCee
Q 007076          130 AATCSL-VDADGSPV  143 (619)
Q Consensus       130 s~~~~~-vd~~G~pl  143 (619)
                      +. +|+ ++ +|..+
T Consensus        79 g~-pG~~~~-~g~v~   91 (336)
T PRK12408         79 AS-AGYALD-DGRVI   91 (336)
T ss_pred             Ee-cCCceE-CCEEE
Confidence            76 676 32 46555

>PRK13318 pantothenate kinase; Reviewed

Probab=96.58  E-value=0.0073  Score=61.28  Aligned_cols=63  Identities=21%  Similarity=0.394  Sum_probs=44.2

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|+||||.|++|.+++| +|+++...+.+++       ....++++..    .++++++..+.+..+|.+|+||+
T Consensus         2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~-------~~~~~~~~~~----~l~~l~~~~~~~~~~i~~I~iss   64 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTD-------SRRTADEYGV----WLKQLLGLSGLDPEDITGIIISS   64 (258)
T ss_pred             EEEEEECCCcEEEEEEE-CCEEEEEEEEeCC-------CCCCHHHHHH----HHHHHHHHcCCCcccCceEEEEE
Confidence            78999999999999999 6888877666654       1233444443    44555555444445789999976

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=96.56  E-value=0.0052  Score=70.69  Aligned_cols=67  Identities=22%  Similarity=0.203  Sum_probs=48.3

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      .+||||||+|++|++++|++|+++...+.+++.              ++.+.+.+++++++.+.  .++.+|||+. +|+
T Consensus        19 ~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~--------------~~~~~~~i~~~l~~~~~--~~~~~igig~-pGp   81 (638)
T PRK14101         19 PRLLADVGGTNARFALETGPGEITQIRVYPGAD--------------YPTLTDAIRKYLKDVKI--GRVNHAAIAI-ANP   81 (638)
T ss_pred             CEEEEEcCchhheeeeecCCCcccceeEEecCC--------------CCCHHHHHHHHHHhcCC--CCcceEEEEE-ecC
Confidence            389999999999999999999987776555531              12345556666654332  3588999976 889


Q ss_pred             ccCC
Q 007076          136 VDAD  139 (619)
Q Consensus       136 vd~~  139 (619)
                      ||.+
T Consensus        82 Vd~~   85 (638)
T PRK14101         82 VDGD   85 (638)
T ss_pred             ccCC
Confidence            9755

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=96.55  E-value=0.0054  Score=61.48  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCC-CccchHHHH
Q 007076          484 LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAI  555 (619)
Q Consensus       484 l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~-e~~alGAAl  555 (619)
                      +..+...+++.+.-.+++.++   +  .+++.|+++||+|+.+.+.+++.+.||.||.++..+ +++|+|||+
T Consensus       171 ~~~~i~~~~~~i~~~i~~~l~---~--~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~  238 (239)
T TIGR02529       171 IFPVVKPVYQKMASIVKRHIE---G--QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM  238 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---h--CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence            333445666666666655554   2  356799999999999999999999999999887755 588999986

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=96.54  E-value=0.0074  Score=69.21  Aligned_cols=80  Identities=20%  Similarity=0.299  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCC-ceeecCCCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~e~~alGAAl  555 (619)
                      ++.++..+...+++-+.-.+++   .|++.++   .++.|+++||.+|-|.+.+++.++||. |+......|+.|+|||+
T Consensus       321 tR~efe~l~~~l~~r~~~~v~~---~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi  397 (657)
T PTZ00186        321 SRSKFEGITQRLIERSIAPCKQ---CMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAAT  397 (657)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH---HHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHH
Confidence            5666655555555555443433   3444443   578999999999999999999999997 55555677899999999


Q ss_pred             HHHhhcc
Q 007076          556 LGAVAAK  562 (619)
Q Consensus       556 lA~~~~G  562 (619)
                      .|+.-.+
T Consensus       398 ~a~~l~~  404 (657)
T PTZ00186        398 LGGVLRG  404 (657)
T ss_pred             HHHHhcc
Confidence            9986544

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=96.48  E-value=0.0089  Score=62.03  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             CCCCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076           50 PARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (619)
Q Consensus        50 ~~m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (619)
                      +.|...++||||.|+|.+|++|.+++..+.......++         -.|.     ..+++++++++.+....+|.++|+
T Consensus       130 ~~~~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~---------g~p~-----~~~~l~~~le~l~~~~~~I~~~~~  195 (396)
T COG1924         130 REYQGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK---------GRPI-----AEKALKEALEELGEKLEEILGLGV  195 (396)
T ss_pred             hhhcCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC---------CChh-----HHHHHHHHHHHcccChheeeeeee
Confidence            56677889999999999999999877756554433332         1222     245666777776666689999999


Q ss_pred             cCc
Q 007076          130 AAT  132 (619)
Q Consensus       130 s~~  132 (619)
                      ++.
T Consensus       196 TGY  198 (396)
T COG1924         196 TGY  198 (396)
T ss_pred             ecc
Confidence            885

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=96.45  E-value=0.009  Score=60.92  Aligned_cols=70  Identities=20%  Similarity=0.276  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHHHHH
Q 007076          482 KQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL  556 (619)
Q Consensus       482 ~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGAAll  556 (619)
                      .++..+.+..+|-+.-.+++.++   +  ..++.|+++||+|+-+.+.+++++.||.||.++..++ .+|+|+|+.
T Consensus       196 ~~~~~ii~~~~~~i~~~i~~~l~---~--~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~  266 (267)
T PRK15080        196 KEIFPVVKPVVEKMASIVARHIE---G--QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALS  266 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh---c--CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhh
Confidence            34444455666666555555443   2  3678999999999999999999999999999888665 889999975

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=96.45  E-value=0.0083  Score=68.86  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl  555 (619)
                      ++.++-.+...+++-+.-.+++.   |++.+.   .++.|+++||.++.|.+.+++.+.||.++.. ....++.|+|||+
T Consensus       294 tR~~fe~l~~~l~~~~~~~i~~~---l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~  370 (627)
T PRK00290        294 TRAKFEELTEDLVERTIEPCKQA---LKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAI  370 (627)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH---HHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHH
Confidence            56676655555555544433333   344443   5789999999999999999999999987754 3466789999999


Q ss_pred             HHHhhccc
Q 007076          556 LGAVAAKR  563 (619)
Q Consensus       556 lA~~~~G~  563 (619)
                      .|+.-.+.
T Consensus       371 ~aa~l~~~  378 (627)
T PRK00290        371 QGGVLAGD  378 (627)
T ss_pred             HHHHhcCC
Confidence            99875553

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=96.25  E-value=0.012  Score=66.96  Aligned_cols=80  Identities=24%  Similarity=0.302  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl  555 (619)
                      ++.++..+..-+++-+.-.++..   |++.+   ..++.|+++||.++.|.+.+++.+.|+.++.. ....++.|+|||+
T Consensus       280 tr~efe~l~~~ll~~i~~~i~~~---L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai  356 (599)
T TIGR01991       280 TRDEFEALIQPLVQKTLSICRRA---LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAI  356 (599)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHH---HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHH
Confidence            56777655556665555444443   34444   35789999999999999999999999986543 3466789999999


Q ss_pred             HHHhhcc
Q 007076          556 LGAVAAK  562 (619)
Q Consensus       556 lA~~~~G  562 (619)
                      .|+.-.+
T Consensus       357 ~a~~l~~  363 (599)
T TIGR01991       357 QADLLAG  363 (599)
T ss_pred             HHHHhcc
Confidence            9986443

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=96.23  E-value=0.015  Score=66.59  Aligned_cols=80  Identities=20%  Similarity=0.310  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCCCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~~e~~alGAAl  555 (619)
                      ++.++..+..-+++-+.-.++.   .|++.+.   .++.|+++||.++.|.+.+++++.||.++. .....++.|+|||+
T Consensus       296 tr~efe~l~~~l~~~~~~~i~~---~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi  372 (616)
T PRK05183        296 TREQFNALIAPLVKRTLLACRR---ALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAI  372 (616)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHH
Confidence            5666655445555555433333   3444443   578999999999999999999999997654 34466789999999


Q ss_pred             HHHhhcc
Q 007076          556 LGAVAAK  562 (619)
Q Consensus       556 lA~~~~G  562 (619)
                      .|+.-.+
T Consensus       373 ~a~~l~~  379 (616)
T PRK05183        373 QADILAG  379 (616)
T ss_pred             HHHHhcc
Confidence            9986444

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=96.22  E-value=0.19  Score=51.26  Aligned_cols=87  Identities=20%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             CCCCcEeEEc-C-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CcCCHHHHHHHHhhhC
Q 007076          465 DPKSKGIICG-M-----TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG  537 (619)
Q Consensus       465 d~~a~g~~~G-l-----~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG-~a~s~~~~Qi~Advlg  537 (619)
                      +.+.-++-+| +     ...-.++|+++   +++..|+..+-++--.. ......++|+..|| ...++..++.++..++
T Consensus       181 ~~d~iASsfGkv~~~~~~~~~~~eDiAa---SLl~mV~~nIg~lA~~~-a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~  256 (279)
T TIGR00555       181 DGSLTASSFGKVLSKHLDQSFSPEDIAA---SLLGLIGNNIGQIAYLC-ALRYNIDRIVFIGSFLRNNQLLMKVLSYATN  256 (279)
T ss_pred             CcceeeeccchhhccccccCCCHHHHHH---HHHHHHHHHHHHHHHHH-HHHcCCCeEEEECCcccCCHHHHHHHHHHHh
Confidence            4566677777 3     23345888875   99999988776654322 22235679999999 6689999999999876


Q ss_pred             ---CceeecCCCC-ccchHHHH
Q 007076          538 ---CPIILPRENE-SVLLGAAI  555 (619)
Q Consensus       538 ---~pV~~~~~~e-~~alGAAl  555 (619)
                         ..+..++..+ .+|+|||+
T Consensus       257 ~~~~~~ifp~h~~y~gAlGAaL  278 (279)
T TIGR00555       257 FWSKKALFLEHEGYSGAIGALL  278 (279)
T ss_pred             hcCceEEEECCcchHHHhhhcc
Confidence               4455666444 77999986

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=96.19  E-value=0.012  Score=67.18  Aligned_cols=81  Identities=23%  Similarity=0.276  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl  555 (619)
                      ++.++..+..-+++-+.-.+++   .|++.+.   .++.|.++||.++.|.+.+++.+.||.++.. ....|+.|+|||+
T Consensus       292 tr~~fe~l~~~l~~~~~~~i~~---~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~  368 (595)
T TIGR02350       292 TRAKFEELTADLVERTKEPVRQ---ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAI  368 (595)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHH
Confidence            5666654444555544433333   3344443   5789999999999999999999999987654 3456788999999


Q ss_pred             HHHhhccc
Q 007076          556 LGAVAAKR  563 (619)
Q Consensus       556 lA~~~~G~  563 (619)
                      .|+.-.+.
T Consensus       369 ~aa~l~~~  376 (595)
T TIGR02350       369 QGGVLKGD  376 (595)
T ss_pred             HHHHhcCC
Confidence            99875543

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=96.16  E-value=0.0091  Score=68.26  Aligned_cols=83  Identities=19%  Similarity=0.308  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA  558 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA~  558 (619)
                      ++.++..+..-+++.+.-.+..+++.......+++.|.++||+++.|.+.+++.+.|+.++... ...++.|+|||+.|+
T Consensus       296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~  375 (602)
T PF00012_consen  296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAA  375 (602)
T ss_dssp             EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHH
T ss_pred             ccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchh
Confidence            4667655455555555444444433221112357899999999999999999999999877653 456788999999998


Q ss_pred             hhcc
Q 007076          559 VAAK  562 (619)
Q Consensus       559 ~~~G  562 (619)
                      .-.+
T Consensus       376 ~~~~  379 (602)
T PF00012_consen  376 ILSG  379 (602)
T ss_dssp             HHHT
T ss_pred             hhcc
Confidence            6554

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=96.12  E-value=0.018  Score=65.48  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILG  557 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g-~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA  557 (619)
                      ++.++..+.+-+++-+.-.++..+   ++.+ ..++.|+++||.++.|.+.+++.+.||.++... ...++.|+|||+.|
T Consensus       278 tr~efe~l~~~l~~~~~~~i~~~L---~~a~~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a  354 (595)
T PRK01433        278 NKQTLEQLILPLVERTINIAQECL---EQAGNPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQA  354 (595)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHH---hhcCcccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHH
Confidence            566766555555555544444333   3333 368999999999999999999999999877543 45678899999999


Q ss_pred             Hhh
Q 007076          558 AVA  560 (619)
Q Consensus       558 ~~~  560 (619)
                      +.-
T Consensus       355 ~~l  357 (595)
T PRK01433        355 ENL  357 (595)
T ss_pred             HHh
Confidence            864

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=95.90  E-value=0.019  Score=66.13  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAAl  555 (619)
                      ++.++..+..-+++-+.-.+++   .|++.++   .++.|+++||.++.|.+.+++.+.||.++.. ....|+.|+|||+
T Consensus       335 tR~efe~l~~~l~~~~~~~i~~---~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi  411 (663)
T PTZ00400        335 SRAKLEELTHDLLKKTIEPCEK---CIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAI  411 (663)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHH
Confidence            5666654444444444333333   3444443   5789999999999999999999999987643 4466789999999


Q ss_pred             HHHhhcc
Q 007076          556 LGAVAAK  562 (619)
Q Consensus       556 lA~~~~G  562 (619)
                      .|+.-.+
T Consensus       412 ~aa~l~~  418 (663)
T PTZ00400        412 QAGVLKG  418 (663)
T ss_pred             HHHhhcC
Confidence            9987544

>PRK13928 rod shape-determining protein Mbl; Provisional

Probab=95.81  E-value=0.019  Score=60.65  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCcC-EEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HG-HKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g-~~~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAl  555 (619)
                      ++.++..+....++.+.-.+++.++.... .. -.++ .|+++||+|+-+.+.+++++.|+.||.+.. ..++.|+|||+
T Consensus       240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~  319 (336)
T PRK13928        240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGK  319 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence            45666655666677666666666654421 11 1244 699999999999999999999999998876 55688999999


Q ss_pred             HHHh
Q 007076          556 LGAV  559 (619)
Q Consensus       556 lA~~  559 (619)
                      .+..
T Consensus       320 ~~~~  323 (336)
T PRK13928        320 MLEN  323 (336)
T ss_pred             HHhc
Confidence            9765

>PLN03184 chloroplast Hsp70; Provisional

Probab=95.69  E-value=0.029  Score=64.85  Aligned_cols=79  Identities=22%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceee-cCCCCccchHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVE-HCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA  554 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~-~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~e~~alGAA  554 (619)
                      ++.++..+..-+++-    +...++ .|++.++   .++.|+++||.++.|.+.+++.++||.++.. ....|+.|+|||
T Consensus       333 tR~~fe~l~~~l~~r----~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAA  408 (673)
T PLN03184        333 TRAKFEELCSDLLDR----CKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAA  408 (673)
T ss_pred             CHHHHHHHHHHHHHH----HHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHH
Confidence            455554333333333    333332 3444443   5789999999999999999999999986644 456779999999


Q ss_pred             HHHHhhcc
Q 007076          555 ILGAVAAK  562 (619)
Q Consensus       555 llA~~~~G  562 (619)
                      +.|+.-.+
T Consensus       409 i~aa~ls~  416 (673)
T PLN03184        409 VQAGVLAG  416 (673)
T ss_pred             HHHHHhcc
Confidence            99986554

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=95.54  E-value=0.032  Score=64.34  Aligned_cols=80  Identities=16%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhC-Cce-eecCCCCccchHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPI-ILPRENESVLLGAA  554 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV-~~~~~~e~~alGAA  554 (619)
                      +|.++-.+..-+++.+.-.+.++   |++.+.   .++.|.++||.++.|.+.+++.+.|+ .++ ......|+.|+|||
T Consensus       300 tR~~fe~l~~~l~~~~~~~i~~~---L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa  376 (653)
T PTZ00009        300 SRARFEELCGDYFRNTLQPVEKV---LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAA  376 (653)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhh
Confidence            56666544444444444333333   334443   57899999999999999999999996 455 45567789999999


Q ss_pred             HHHHhhcc
Q 007076          555 ILGAVAAK  562 (619)
Q Consensus       555 llA~~~~G  562 (619)
                      +.|+.-.+
T Consensus       377 ~~aa~ls~  384 (653)
T PTZ00009        377 VQAAILTG  384 (653)
T ss_pred             hhHHHhcC
Confidence            99986544

>PRK11678 putative chaperone; Provisional

Probab=95.39  E-value=0.073  Score=58.37  Aligned_cols=81  Identities=22%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-CceeecCCCCccchHHH
Q 007076          476 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPRENESVLLGAA  554 (619)
Q Consensus       476 ~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~~~~~e~~alGAA  554 (619)
                      ...-++.++..+++..++-+.-.+++   .+++.+..++.|+++||.++.|.+.+++...|+ .|+...+..++.|.|+|
T Consensus       366 ~~~ItR~efe~ii~~~l~ri~~~i~~---~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla  442 (450)
T PRK11678        366 ATEISQQGLEEAISQPLARILELVQL---ALDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLA  442 (450)
T ss_pred             ceeeCHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHH
Confidence            33346777765444444444433333   344566777899999999999999999999996 68888778889999999


Q ss_pred             HHHHh
Q 007076          555 ILGAV  559 (619)
Q Consensus       555 llA~~  559 (619)
                      +.|..
T Consensus       443 ~~a~~  447 (450)
T PRK11678        443 RWAQV  447 (450)
T ss_pred             HHHHh
Confidence            98864

>PRK13411 molecular chaperone DnaK; Provisional

Probab=95.26  E-value=0.04  Score=63.51  Aligned_cols=80  Identities=21%  Similarity=0.244  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhC-Cceee-cCCCCccchHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPIIL-PRENESVLLGAA  554 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~-~~~~e~~alGAA  554 (619)
                      ++.++..+..-+++-+.-.+.   +.|++.++   .++.|+++||.++.|.+.+++.+.|+ .++.. ....|+.|+|||
T Consensus       295 tR~~fe~l~~~l~~~~~~~i~---~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAA  371 (653)
T PRK13411        295 TRAKFEELTKDLVEATIEPMQ---QALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAA  371 (653)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHH
Confidence            566665444444444333222   23445554   37899999999999999999999997 55543 456779999999


Q ss_pred             HHHHhhcc
Q 007076          555 ILGAVAAK  562 (619)
Q Consensus       555 llA~~~~G  562 (619)
                      +.|+.-.+
T Consensus       372 i~aa~l~~  379 (653)
T PRK13411        372 IQAGVLGG  379 (653)
T ss_pred             HHHHhhcC
Confidence            99986544

>PRK13927 rod shape-determining protein MreB; Provisional

Probab=94.95  E-value=0.055  Score=57.01  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-Cc-CEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGH-KI-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~-~~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAl  555 (619)
                      +++++..++...++.+.-.+++.++.... ... .. ..|+++||+++-+.+.+.+.+.++.||.+.. ..++.|+|||+
T Consensus       241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~  320 (334)
T PRK13927        241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK  320 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence            45566555666667666666665554321 001 12 3599999999999999999999999998876 44578999999


Q ss_pred             HHHh
Q 007076          556 LGAV  559 (619)
Q Consensus       556 lA~~  559 (619)
                      .+..
T Consensus       321 ~~~~  324 (334)
T PRK13927        321 ALEN  324 (334)
T ss_pred             HHhh
Confidence            9765

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=94.89  E-value=0.12  Score=50.34  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCC-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~-il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~-~~~~I~aIgis~  131 (619)
                      ..+|+||+|+|++|++++...|. .+...+..+++-.  .......+++++.+.++|.+.++.... +..+..-+|++-
T Consensus        63 G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~--~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfTF  139 (206)
T PF00349_consen   63 GDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPE--ELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFTF  139 (206)
T ss_dssp             EEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--H--HHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEEE
T ss_pred             ceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCCh--HHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEEE
Confidence            35899999999999999995544 3333333333210  011234489999999999999987543 345667788864

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=94.85  E-value=0.17  Score=55.15  Aligned_cols=64  Identities=11%  Similarity=0.089  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHC----NAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  544 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l----~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~  544 (619)
                      +.++..+.++-+|-+.-.+++.++.+    .+.+   ..+..|+++||+|+-+.+.++++++|+.||.+..
T Consensus       290 ~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~  360 (420)
T PRK09472        290 RQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA  360 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeC
Confidence            56677777888888877777777544    3333   3467899999999999999999999999998743

>smart00842 FtsA Cell division protein FtsA

Probab=94.46  E-value=0.24  Score=47.57  Aligned_cols=73  Identities=25%  Similarity=0.333  Sum_probs=47.8

Q ss_pred             EEEEEcCCcceEEEEEc--CCC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d--~~g--~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++||||||+++|+++..  .+|  ++++....|..-. ..| .-.|.+.+-+++.++++++-+.++....+ ..+++++.
T Consensus         1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~gi-~~G-~I~d~~~~~~~I~~ai~~ae~~~~~~i~~-V~v~i~g~   77 (187)
T smart00842        1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRGI-RKG-VIVDIEAAARAIREAVEEAERMAGVKIDS-VYVGISGR   77 (187)
T ss_pred             CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc-cCc-EEECHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcCC
Confidence            46999999999999986  345  4455444432111 223 45688888888888888886666654333 34677664

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>PRK13930 rod shape-determining protein MreB; Provisional

Probab=94.35  E-value=0.079  Score=55.84  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCcCE-EEEecCCcCCHHHHHHHHhhhCCceeecCC-CCccchHHHHH
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNAH-G-HKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAIL  556 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~-g-~~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~-~e~~alGAAll  556 (619)
                      +.++..++...++.+.-.+++.++..... . ..+++ |+++||+++-+.+.+.+++.++.||.+... .++.++|||++
T Consensus       246 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~  325 (335)
T PRK13930        246 SEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKA  325 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence            45555555556666665555555533210 0 11244 999999999999999999999999988764 45778999998


Q ss_pred             HHh
Q 007076          557 GAV  559 (619)
Q Consensus       557 A~~  559 (619)
                      +..
T Consensus       326 ~~~  328 (335)
T PRK13930        326 LEN  328 (335)
T ss_pred             HhC
Confidence            754

>TIGR02707 butyr_kinase butyrate kinase

Probab=94.16  E-value=0.11  Score=55.03  Aligned_cols=72  Identities=10%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeec-ccccCCCccccCHHHHHHHHH---HHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAIC---AAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~~~g~~e~dp~~~~~~~~---~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      +|.|.+|+||+|++||+.+++++.+..... +..       -+++.+.+.+.   +.+.+++++.++...+|.+|+-  -
T Consensus         2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~~~-------~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av~~--R   72 (351)
T TIGR02707         2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVEEL-------GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAVVG--R   72 (351)
T ss_pred             EEEEecCchhheEEEEeCCCceeeeeecCCHHHh-------cccccHHHHHHHHHHHHHHHHHHcCCCcccccEEEE--C
Confidence            799999999999999999998877654443 211       12223344444   5666666666655667888832  1


Q ss_pred             ccccc
Q 007076          133 CSLVD  137 (619)
Q Consensus       133 ~~~vd  137 (619)
                      +|+++
T Consensus        73 gG~~~   77 (351)
T TIGR02707        73 GGLLK   77 (351)
T ss_pred             CCCCc
Confidence            45664

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family

Probab=94.01  E-value=0.12  Score=54.45  Aligned_cols=79  Identities=14%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-c-CEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHHH
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL  556 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~-~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAll  556 (619)
                      +.++..++...++.+.-.++..++.... .... . +.|+++||+|+-+.+.+.+++.|+.||.+.. ..++.|+|||++
T Consensus       245 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~  324 (333)
T TIGR00904       245 SVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKA  324 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHH
Confidence            3455444555566665555555544321 1111 2 3699999999999999999999999998876 445789999998


Q ss_pred             HHh
Q 007076          557 GAV  559 (619)
Q Consensus       557 A~~  559 (619)
                      +..
T Consensus       325 ~~~  327 (333)
T TIGR00904       325 LED  327 (333)
T ss_pred             HhC
Confidence            643

A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.

>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=93.92  E-value=0.31  Score=49.07  Aligned_cols=72  Identities=24%  Similarity=0.272  Sum_probs=57.3

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEEc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVGFA  130 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~-I~aIgis  130 (619)
                      ++++.|||=|.|..|.+++|++++++.++......+     .-.+-+..-+.+.+.++++..+.+.+... ++++|++
T Consensus         2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh-----~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~   74 (336)
T KOG1794|consen    2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNH-----WLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLG   74 (336)
T ss_pred             CceeEeecCCcceeEEEEECCCCCEeeEeecccccc-----ccCCchHHHHHHHHHHHHHHhhcCCCccCccceeeee
Confidence            468999999999999999999999998876544322     12335677788899999999998887776 7888775

>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=93.59  E-value=0.17  Score=56.45  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeec-CCCCccchHHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA  558 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~e~~alGAAllA~  558 (619)
                      .+.++-.+..-+++=+-.-+...++...-.+-++..|=++||.+|.|.+-+++++.||++..+. ...|+.|+||||.++
T Consensus       301 ~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcA  380 (727)
T KOG0103|consen  301 KREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCA  380 (727)
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHH
Confidence            3566655555666666555554444322122356688899999999999999999999999754 467899999999988


Q ss_pred             hh
Q 007076          559 VA  560 (619)
Q Consensus       559 ~~  560 (619)
                      .-
T Consensus       381 Il  382 (727)
T KOG0103|consen  381 IL  382 (727)
T ss_pred             hc
Confidence            64

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=93.56  E-value=0.37  Score=49.12  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=44.0

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (619)
                      .++++||||||+++|+++.+.+++++.....+-.-. ..|. -.|.+.....+..+++.+-+..+.   +|..+.+
T Consensus        23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~v-r~G~-i~di~~a~~~i~~~~~~ae~~~g~---~i~~v~~   93 (267)
T PRK15080         23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVV-RDGI-VVDFIGAVTIVRRLKATLEEKLGR---ELTHAAT   93 (267)
T ss_pred             CCEEEEEEccCceEEEEEEcCCCCEEEEEecccccc-CCCE-EeeHHHHHHHHHHHHHHHHHHhCC---CcCeEEE
Confidence            468999999999999999987777655544433211 3333 556666666666665544333333   3444444

>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed

Probab=93.39  E-value=0.29  Score=51.91  Aligned_cols=59  Identities=22%  Similarity=0.322  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  544 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~  544 (619)
                      +++|+.+   -+.|-.|.++.+.++.+.   ..+++|+++|||++|+.+++.+...+..+|...+
T Consensus       260 s~~D~~a---Tlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~  318 (365)
T PRK09585        260 SPEDVQA---TLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTD  318 (365)
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHH
Confidence            4667653   667766766666654432   2346899999999999999999999975665544

>PLN02920 pantothenate kinase 1

Probab=93.35  E-value=3.4  Score=43.93  Aligned_cols=167  Identities=13%  Similarity=0.064  Sum_probs=94.2

Q ss_pred             eEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076          349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  428 (619)
Q Consensus       349 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~  428 (619)
                      -+++++||...+..+..                 ++.|-..+++.-||..+-=|...+.            +...|+++.
T Consensus       167 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sfdEll  217 (398)
T PLN02920        167 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTSVGGGTFWGLGKLLT------------KCKSFDELL  217 (398)
T ss_pred             eEEEEcCCCEEEEEEeC-----------------CCcEEEEcccccchHhHHHHHHHHc------------CCCCHHHHH
Confidence            47788998765443322                 1233344455555555432333222            345677776


Q ss_pred             HHHHhhhhccCCCCccCCCCceEEcccCCCCC---CCCCCCCCcEeEEc--CCC-----CCCHHHHHHHHHHHHHHHHHH
Q 007076          429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MTL-----DSSEKQLALLYLATVQGIAYG  498 (619)
Q Consensus       429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r---~P~~d~~a~g~~~G--l~~-----~~~~~~l~~~~rAvlEgiaf~  498 (619)
                      ++++.=..         ..-++ .+-.+.|..   .+--+.++-++-+|  ...     +-+++|+++   +++--|+.+
T Consensus       218 ~lA~~Gd~---------~nvDl-lVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~---SLL~mVs~n  284 (398)
T PLN02920        218 ELSHQGNN---------RVIDM-LVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVAR---SLLRMISNN  284 (398)
T ss_pred             HHHhCCCc---------cccCc-eeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHH---HHHHHHHHH
Confidence            66543110         01122 345555522   22345667777777  322     234788765   999999988


Q ss_pred             HHHHHHHHHhCCCCcCEEEEecCCcCCH-HHHHHHHhhh------CCceeecC-CCCccchHHHHHHH
Q 007076          499 TRHIVEHCNAHGHKIDTLLACGGLAKNP-LFLQQHADII------GCPIILPR-ENESVLLGAAILGA  558 (619)
Q Consensus       499 ~~~~l~~l~~~g~~~~~I~~~GG~a~s~-~~~Qi~Advl------g~pV~~~~-~~e~~alGAAllA~  558 (619)
                      +-++--...+ ...+++|+.+|+..+++ ..++.++-..      ++....++ ..-.+|+||++...
T Consensus       285 IgqiA~L~A~-~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~  351 (398)
T PLN02920        285 IGQISYLNAL-RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE  351 (398)
T ss_pred             HHHHHHHHHH-HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence            8876432222 24678999999999887 6666555543      23333444 44588999976543

>PRK13929 rod-share determining protein MreBH; Provisional

Probab=93.12  E-value=0.15  Score=53.83  Aligned_cols=44  Identities=23%  Similarity=0.230  Sum_probs=38.0

Q ss_pred             cC-EEEEecCCcCCHHHHHHHHhhhCCceeecCC-CCccchHHHHH
Q 007076          513 ID-TLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAIL  556 (619)
Q Consensus       513 ~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~-~e~~alGAAll  556 (619)
                      ++ .|+++||+|+-+.+.+.+++.++.||.+... .++.++||+..
T Consensus       278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~  323 (335)
T PRK13929        278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS  323 (335)
T ss_pred             cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence            44 5999999999999999999999999988744 45778899876

>TIGR01174 ftsA cell division protein FtsA

Probab=92.99  E-value=0.42  Score=51.16  Aligned_cols=73  Identities=19%  Similarity=0.275  Sum_probs=48.2

Q ss_pred             EEEEEcCCcceEEEEEc--CCC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d--~~g--~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++||||||+++|+++..  .++  ++++....|..-. ..| .-.|++.+-+++.++++++-+.++....+ ..+++++.
T Consensus         2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi-~~G-~I~d~~~~~~~i~~al~~~e~~~~~~i~~-v~~~v~g~   78 (371)
T TIGR01174         2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGI-KKG-VINDIEAAVGSIQRAIEAAELMAGCEIRS-VIVSISGA   78 (371)
T ss_pred             EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc-cCc-EEEcHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEccc
Confidence            68999999999999976  334  3445444443211 223 45688888888888888876666654333 45677664

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P

Probab=92.84  E-value=0.44  Score=50.57  Aligned_cols=76  Identities=17%  Similarity=0.241  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCC-ceeecCCC-----CccchHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPREN-----ESVLLGA  553 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~-----e~~alGA  553 (619)
                      .++|+.+   -+.|-.|.++.+.++.+.   .++++|+++|||++|+.+++.+...+.. +|...+.-     ---|+.=
T Consensus       258 ~~~D~~a---Tlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF  331 (364)
T PF03702_consen  258 SPEDILA---TLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF  331 (364)
T ss_dssp             -HHHHHH---HHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH
T ss_pred             ChHHHHH---HHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH
Confidence            3677653   777777777766666553   3478999999999999999999998865 88665421     1225666


Q ss_pred             HHHHHhhc
Q 007076          554 AILGAVAA  561 (619)
Q Consensus       554 AllA~~~~  561 (619)
                      |+||...+
T Consensus       332 A~La~~~~  339 (364)
T PF03702_consen  332 AWLAYRRL  339 (364)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776544

It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.

>PRK13317 pantothenate kinase; Provisional

Probab=92.66  E-value=0.3  Score=49.94  Aligned_cols=28  Identities=14%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEE
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSA   82 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~   82 (619)
                      ++.+|||+|+|.+|.+++|+++++....
T Consensus         2 ~~~iGIDiGstt~K~v~~~~~~~~~~~~   29 (277)
T PRK13317          2 EMKIGIDAGGTLTKIVYLEEKKQRTFKT   29 (277)
T ss_pred             CceEEEEeCcccEEEEEEcCCCeEEEEe
Confidence            4789999999999999999888766443

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=92.41  E-value=0.49  Score=51.57  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             CCCCeEEEEEcCCcceEEEEEc--CCCC--EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 007076           52 RSRSVFLGVDVGTGSARAGLFD--ESGK--LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGV  127 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d--~~g~--il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aI  127 (619)
                      |+.++++||||||+++|+++..  .+|+  ++.....|..-. ..| .-.|.+..-+++.++++++-+.++....++ .+
T Consensus         5 ~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi-~~G-~I~d~~~~~~aI~~av~~ae~~~g~~i~~v-~v   81 (420)
T PRK09472          5 TDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGM-DKG-GVNDLESVVKCVQRAIDQAELMADCQISSV-YL   81 (420)
T ss_pred             cCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCc-cCC-EEEcHHHHHHHHHHHHHHHHHHhCCcccEE-EE
Confidence            4456899999999999998776  3554  445555442111 233 457888888888888888766665544443 36


Q ss_pred             EEcCc
Q 007076          128 GFAAT  132 (619)
Q Consensus       128 gis~~  132 (619)
                      +|++.
T Consensus        82 ~i~g~   86 (420)
T PRK09472         82 ALSGK   86 (420)
T ss_pred             EecCc
Confidence            66663

>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=0.4  Score=50.14  Aligned_cols=53  Identities=26%  Similarity=0.335  Sum_probs=45.2

Q ss_pred             CCcCEEEEecCCcCCHHHHHHHHhhhC-C-ceeecCCCCccchHHHHHHHhhccc
Q 007076          511 HKIDTLLACGGLAKNPLFLQQHADIIG-C-PIILPRENESVLLGAAILGAVAAKR  563 (619)
Q Consensus       511 ~~~~~I~~~GG~a~s~~~~Qi~Advlg-~-pV~~~~~~e~~alGAAllA~~~~G~  563 (619)
                      ..++.|+++||.+|-|-..|++-|.|+ + |-.-....|+.|.|||..|++-.|.
T Consensus       361 sdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe  415 (663)
T KOG0100|consen  361 SDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE  415 (663)
T ss_pred             ccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence            368899999999999999999999994 4 5555667889999999999886665

>TIGR00749 glk glucokinase, proteobacterial type

Probab=91.69  E-value=0.29  Score=51.14  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEE
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGS   81 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~   81 (619)
                      |.+|||+|++|++++|++++++..
T Consensus         1 l~~DIGGT~i~~glvd~~g~~l~~   24 (316)
T TIGR00749         1 LVGDIGGTNARLALCEIAPGEISQ   24 (316)
T ss_pred             CeEecCcceeeEEEEecCCCceee
Confidence            579999999999999988776654

This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.

>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []

Probab=91.52  E-value=0.73  Score=49.07  Aligned_cols=80  Identities=20%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCE-EEEecCCcCCHHHHHHHHhhhCC-ceeecC--CCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGC-PIILPR--ENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~-I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~--~~e~~alGAAl  555 (619)
                      ...|++.-++..+|-+.+.+...+  +++.+  .++ |.++||.+-|-.+++.+.+..+. .|.|++  .+++.++|||+
T Consensus       134 ~~~dlAa~~Q~~~E~~v~~~~~~~--~~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~  209 (360)
T PF02543_consen  134 RHADLAASAQKVLEEIVLHLVRHL--LERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAAL  209 (360)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHH--HHHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH--HHHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHH
Confidence            457888878889998887654332  22333  445 99999999999999999999665 477766  44577999999


Q ss_pred             HHHhhccc
Q 007076          556 LGAVAAKR  563 (619)
Q Consensus       556 lA~~~~G~  563 (619)
                      .+....+.
T Consensus       210 ~~~~~~~~  217 (360)
T PF02543_consen  210 YAWHELGG  217 (360)
T ss_dssp             HHHHHTT-
T ss_pred             HHHHHhcC
Confidence            99877654

The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.

>PLN02914 hexokinase

Probab=91.46  E-value=0.63  Score=51.26  Aligned_cols=61  Identities=15%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA  117 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~  117 (619)
                      -.+++||+|+||.|+++++..|+   ++...+..+++-.  ....-..+++|+.+.++|.+++++.
T Consensus        95 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~l~~gt~~eLFdfIA~~i~~fl~~~  158 (490)
T PLN02914         95 GLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQ--ELMFGTSEELFDFIASGLANFVAKE  158 (490)
T ss_pred             eEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence            35899999999999999996552   4444444333211  1123456899999999999999864

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=91.41  E-value=0.42  Score=50.57  Aligned_cols=58  Identities=17%  Similarity=0.303  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--CCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076          487 LYLATVQGIAYGTRHIVEHCNA--HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  544 (619)
Q Consensus       487 ~~rAvlEgiaf~~~~~l~~l~~--~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~  544 (619)
                      .++.+++-++-++++.++.+..  .+.++++|+++||+++-+-+.+.+++.||.||++..
T Consensus       247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~  306 (340)
T PF11104_consen  247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN  306 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence            3568899999999999997654  356899999999999999999999999999999865

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=91.27  E-value=0.81  Score=46.61  Aligned_cols=69  Identities=22%  Similarity=0.328  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHH-----HhhhCCceeecCC-CCccchHHHHHH
Q 007076          489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQH-----ADIIGCPIILPRE-NESVLLGAAILG  557 (619)
Q Consensus       489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~-----Advlg~pV~~~~~-~e~~alGAAllA  557 (619)
                      ..+++..+..+.+.+..+.+ .+.....|++.||..+|..+.+-+     ..+...|+.++.. ...+++|||++|
T Consensus       196 ~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA  271 (271)
T PF01869_consen  196 RDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA  271 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence            36777777777777665544 333323399999999997776655     4445566666554 457899999987

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PF13941 MutL: MutL protein

Probab=91.22  E-value=0.73  Score=50.25  Aligned_cols=53  Identities=26%  Similarity=0.440  Sum_probs=41.9

Q ss_pred             EEEEEcCCcceEEEEEc---CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007076           57 FLGVDVGTGSARAGLFD---ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN  118 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d---~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~  118 (619)
                      +|.+|||+|-+|+.+||   .+.++++..+.|+.       ++.  .++...+.++++++.+..+
T Consensus         2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-------v~~--~Dv~~G~~~A~~~l~~~~~   57 (457)
T PF13941_consen    2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-------VEP--GDVTIGLNNALEQLEEQTP   57 (457)
T ss_pred             EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-------cCc--ccHHHHHHHHHHHHHHhcC
Confidence            68899999999999999   56788888888876       222  5677777888887776654

>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]

Probab=91.11  E-value=0.59  Score=51.23  Aligned_cols=80  Identities=15%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHH-HHHHhhhCCceeecC--CCCccchHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADIIGCPIILPR--ENESVLLGAAIL  556 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~-Qi~Advlg~pV~~~~--~~e~~alGAAll  556 (619)
                      ...|++...++.+|-+...+...+..  +.|  ..+|.++||.+.|-.++ +++...++..|.|.+  ..++.|+|||+.
T Consensus       257 ~~~diAasaQ~~lE~l~l~~~~~~~~--~~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~  332 (555)
T COG2192         257 RAADIAASAQAYLEELVLEMLRYLRE--ETG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALA  332 (555)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH--HhC--ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHH
Confidence            35688878889999999866554432  222  67899999999999999 899999998998866  445779999999


Q ss_pred             HHhhccc
Q 007076          557 GAVAAKR  563 (619)
Q Consensus       557 A~~~~G~  563 (619)
                      +....+.
T Consensus       333 ~~~~~~~  339 (555)
T COG2192         333 VKRELGG  339 (555)
T ss_pred             HHHHhcC
Confidence            9876543

>PLN02405 hexokinase

Probab=91.08  E-value=0.72  Score=50.96  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=42.7

Q ss_pred             eEEEEEcCCcceEEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007076           56 VFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA  117 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~  117 (619)
                      .+++||+|+||.|++++...|+   ++...+..+++-+  ....-..+++|+.+.++|.+.+++.
T Consensus        96 ~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~~~~gt~~~LFdfIA~~i~~fl~~~  158 (497)
T PLN02405         96 LFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPP--HLMTGSSDALFDFIAAALAKFVATE  158 (497)
T ss_pred             eEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence            5899999999999999996552   4443333333211  1223456889999999999999764

>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=90.71  E-value=2.5  Score=44.52  Aligned_cols=165  Identities=14%  Similarity=0.137  Sum_probs=88.2

Q ss_pred             eEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076          349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  428 (619)
Q Consensus       349 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~  428 (619)
                      -+++++||...+..+..                 ++.|-..|++.-||..+-=+...+.            +...|+++.
T Consensus       158 yllvniGsGvSi~~v~~-----------------~~~~~rvgGs~iGGgT~~GL~~llt------------~~~~~~e~~  208 (341)
T PF03630_consen  158 YLLVNIGSGVSILKVEG-----------------PNQFERVGGSSIGGGTFWGLCSLLT------------GCKSFDEIL  208 (341)
T ss_dssp             EEEEEESSSEEEEEEEE-----------------TTEEEEEEEES-SHHHHHHHHHHHH---------------SHHHHH
T ss_pred             EEEEEcCCceEEEEEeC-----------------CCceEEEeccccchHhHHHHHHHhc------------CCCCHHHHH
Confidence            47789998755443322                 2334444555556665533333221            234566666


Q ss_pred             HHHHhhhhccCCCCccCCCCceEEcccCCCCC--CCCCCCCCcEeEEcCCCC-------CCHHHHHHHHHHHHHHHHHHH
Q 007076          429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICGMTLD-------SSEKQLALLYLATVQGIAYGT  499 (619)
Q Consensus       429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r--~P~~d~~a~g~~~Gl~~~-------~~~~~l~~~~rAvlEgiaf~~  499 (619)
                      ++++.=..         ..-+ +.+-.+.|..  .+.-..+.-++-+|--..       ..++|+++   +++.-|++++
T Consensus       209 ~la~~G~~---------~~vD-llV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~---sll~mv~~nI  275 (341)
T PF03630_consen  209 ELAKKGDN---------SNVD-LLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAK---SLLNMVSNNI  275 (341)
T ss_dssp             HHHHH--G---------GGTS-EEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHH---HHHHHHHHHH
T ss_pred             HHhcCCCc---------cccC-ceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHH---HHHHHHHHHH
Confidence            66543111         0112 2344555544  222345666665553332       24677665   9999999998


Q ss_pred             HHHHHHHHhCCCCcCEEEEecCCcC-CHHHHHHHH---hhh---CCceeecC-CCCccchHHHHH
Q 007076          500 RHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHA---DII---GCPIILPR-ENESVLLGAAIL  556 (619)
Q Consensus       500 ~~~l~~l~~~g~~~~~I~~~GG~a~-s~~~~Qi~A---dvl---g~pV~~~~-~~e~~alGAAll  556 (619)
                      -++.-...+ -..+++|+++|...+ ++..++.++   +..   +.....++ ..-.+|+||.+.
T Consensus       276 g~la~l~A~-~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~  339 (341)
T PF03630_consen  276 GQLAYLHAK-IHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK  339 (341)
T ss_dssp             HHHHHHHHH-HHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred             HHHHHHHHH-HcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence            886543322 124689999999885 577888888   443   23333444 445889998764

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.

>PLN02596 hexokinase-like

Probab=90.70  E-value=0.81  Score=50.44  Aligned_cols=60  Identities=12%  Similarity=0.148  Sum_probs=41.8

Q ss_pred             eEEEEEcCCcceEEEEEcCCCC---EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007076           56 VFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA  117 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~  117 (619)
                      -+|+||+|+||.|+++++..|+   +....+..+++-.  ....-..+++|+.+.++|.+++++.
T Consensus        97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~--~l~~~t~~eLFd~IA~~i~~fl~~~  159 (490)
T PLN02596         97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPS--NVLNGTSQELFDYIALELAKFVAEH  159 (490)
T ss_pred             EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCCh--HhhcCCHHHHHHHHHHHHHHHHHhh
Confidence            4799999999999999997654   2333333333211  1123356889999999999999764

>PTZ00288 glucokinase 1; Provisional

Probab=90.67  E-value=1.5  Score=47.25  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=39.6

Q ss_pred             CCCeEEEEEcCCcceEEEEEcC---CCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHH
Q 007076           53 SRSVFLGVDVGTGSARAGLFDE---SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL  116 (619)
Q Consensus        53 ~~~~~lgIDiGTTsiKa~l~d~---~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~  116 (619)
                      +-+|++|+|||+|++|.++++.   ++..+.....+++.      .-.|..+..+.+.+.+.++.+.
T Consensus        24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~   84 (405)
T PTZ00288         24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV------TKTDIRELLEFFDEVLQKLKKN   84 (405)
T ss_pred             cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc------ccccHHHHHHHHHHHHHHHHhc
Confidence            3468999999999999999985   23333434444331      1356677778878888777654

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=90.45  E-value=0.79  Score=52.00  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHH-HH----HHHHhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCCcee-ecCCCCccchHHHHHHH
Q 007076          488 YLATVQGIAYGTRH-IV----EHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVLLGAAILGA  558 (619)
Q Consensus       488 ~rAvlEgiaf~~~~-~l----~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~~e~~alGAAllA~  558 (619)
                      .|+.+|.++..+-. .+    ..+.+.+   .+++.|.++||.++-|...+.+++.|+.++. -+...|+.|+|||+.|+
T Consensus       277 tR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~  356 (579)
T COG0443         277 TRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAA  356 (579)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHH
Confidence            34555555544222 12    2333344   3688999999999999999999999996554 45577899999999999


Q ss_pred             hhccccC
Q 007076          559 VAAKRYS  565 (619)
Q Consensus       559 ~~~G~~~  565 (619)
                      .-.|...
T Consensus       357 ~l~~~~~  363 (579)
T COG0443         357 VLSGEVP  363 (579)
T ss_pred             hhcCccc
Confidence            8766543

>PLN02362 hexokinase

Probab=90.13  E-value=0.97  Score=50.14  Aligned_cols=59  Identities=15%  Similarity=0.288  Sum_probs=41.5

Q ss_pred             eEEEEEcCCcceEEEEEcCCCC---EEEE--EEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGK---LLGS--ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN  118 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~---il~~--~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~  118 (619)
                      .+++||+|+||.|+++++..|+   ++..  .+.++|..    ...-..+++|+.+.++|.+++++.+
T Consensus        96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~----l~~~~~~eLFd~IA~~i~~fl~~~~  159 (509)
T PLN02362         96 TYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQH----LMNSTSEVLFDFIASSLKQFVEKEE  159 (509)
T ss_pred             eEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChh----hccCCHHHHHHHHHHHHHHHHHhcC
Confidence            4899999999999999996653   2222  22233311    1233578999999999999998743

>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=1.5  Score=45.82  Aligned_cols=56  Identities=20%  Similarity=0.333  Sum_probs=39.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-Ccee
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPII  541 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~  541 (619)
                      +++|..   +.+.|-.+-.+   ++.+.......++++++||+++|+++|+.+|..+. .+|.
T Consensus       264 ~a~Dv~---aTL~eltA~tI---v~s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~  320 (371)
T COG2377         264 NAEDVQ---ATLVELTAATI---VKSVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVA  320 (371)
T ss_pred             CHHHHH---HHHHHHHHHHH---HHHHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeee
Confidence            355654   36777666444   44443333467899999999999999999999995 4443

>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=89.18  E-value=1.9  Score=44.91  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecc-ccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~-~~~-~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      +|||.-.-..+-++|++.++ +++.....+. .+. .+|.+ |.-...-.+.+..+++++++++++...+|.+|+++..+
T Consensus         3 iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gP   81 (342)
T COG0533           3 ILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGP   81 (342)
T ss_pred             EEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCC
Confidence            78888777778888888666 6654433221 122 33433 33345556778888999999988888899999998756


Q ss_pred             ccc
Q 007076          134 SLV  136 (619)
Q Consensus       134 ~~v  136 (619)
                      |++
T Consensus        82 GL~   84 (342)
T COG0533          82 GLG   84 (342)
T ss_pred             Cch
Confidence            653

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=89.15  E-value=1.3  Score=42.24  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCC-CccchHHHHHHH
Q 007076          489 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAILGA  558 (619)
Q Consensus       489 rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~-e~~alGAAllA~  558 (619)
                      +-|+|-+|--.+..++     +-+++.+++.||.+.-+-.-.++-.-|+++|+.+..+ ..+-||.|+..+
T Consensus       208 ~PV~eKMAeIv~~hie-----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg~  273 (277)
T COG4820         208 KPVYEKMAEIVARHIE-----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSGR  273 (277)
T ss_pred             hHHHHHHHHHHHHHhc-----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhccc
Confidence            4667766655555544     3467899999999988888999999999999988855 477888877543

>TIGR01174 ftsA cell division protein FtsA

Probab=88.97  E-value=1.2  Score=47.77  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC--CcCE-EEEecCCcCCHHHHHHHHhhhCCceeecCC
Q 007076          480 SEKQLALLYLATVQGIAYGTR-HIVEHCNAHGH--KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRE  545 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~-~~l~~l~~~g~--~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~  545 (619)
                      ++.++..+..+.++-+.-.++ +   .+++.+.  .+.+ |+++||+|+-+.+.+++.+.|+.||++...
T Consensus       281 s~~~l~~ii~~~~~ei~~~i~~~---~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P  347 (371)
T TIGR01174       281 SRKELAEIIEARAEEILEIVKQK---ELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP  347 (371)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence            456666555555555544443 3   4444433  3455 999999999999999999999999987653

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes

Probab=88.84  E-value=0.31  Score=50.98  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=35.5

Q ss_pred             CEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-ccchHHHHHH
Q 007076          514 DTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG  557 (619)
Q Consensus       514 ~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~alGAAllA  557 (619)
                      +-|+++||+|.-+-+-+.+++-++.||.+.+.++ +.+.|+..+.
T Consensus       275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l  319 (326)
T PF06723_consen  275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL  319 (326)
T ss_dssp             H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred             CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence            3599999999999999999999999999988776 5677876643

In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=88.52  E-value=1.7  Score=45.74  Aligned_cols=79  Identities=11%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e-~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      +||||-.+..+-++|+|.+|+++.............|-+. .....=.+.+..+++++++++++...+|.+|+++..+|+
T Consensus         3 iLgIETScd~tsvAl~~~~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl   82 (345)
T PTZ00340          3 ALGIEGSANKLGVGIVTSDGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGM   82 (345)
T ss_pred             EEEEEccchhhEEEEEECCCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCc
Confidence            8999999999999999977888876544332111214332 223444667788888888888888899999999875553

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=88.23  E-value=1.1  Score=46.74  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=27.2

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEEEEeeccc
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQI   88 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~   88 (619)
                      ||+|||+-++|++++|++|++....+.+.|+
T Consensus         1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl   31 (318)
T TIGR03123         1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL   31 (318)
T ss_pred             CccccccceeeeEEecCCCceeEEEEecCcc
Confidence            5899999999999999999888877777774

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>PRK14878 UGMP family protein; Provisional

Probab=88.19  E-value=1.7  Score=45.62  Aligned_cols=73  Identities=14%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCCCCccchHHHHHHH
Q 007076          482 KQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGA  558 (619)
Q Consensus       482 ~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~~e~~alGAAllA~  558 (619)
                      .+++.   ++.+.++-.+.++.....+. ..+++|.++||.+.|..+++.+.+.+   |.+|.+++..-++- |++|+|.
T Consensus       215 ~diAa---~fq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D-~GimIA~  289 (323)
T PRK14878        215 EDVCY---SLRETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGD-NGAMIAY  289 (323)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCch-HHHHHHH
Confidence            46654   77777776666666555431 24678999999999999999999987   88888866322333 4444454


Q ss_pred             h
Q 007076          559 V  559 (619)
Q Consensus       559 ~  559 (619)
                      .
T Consensus       290 ~  290 (323)
T PRK14878        290 T  290 (323)
T ss_pred             H
Confidence            3

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=88.16  E-value=1.4  Score=44.21  Aligned_cols=53  Identities=21%  Similarity=0.142  Sum_probs=32.9

Q ss_pred             EEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHH
Q 007076           59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSA  113 (619)
Q Consensus        59 gIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~  113 (619)
                      ||||||+++|+++.+.+++.++..  +.+..+-.+..-.|.+.....+..+++.+
T Consensus         1 g~dig~~~ik~v~~~~~~~~~~~~--~~~~~~~~~g~I~d~~~~~~~l~~l~~~a   53 (239)
T TIGR02529         1 GVDLGTANIVIVVLDEDGQPVAGV--MQFADVVRDGIVVDFLGAVEIVRRLKDTL   53 (239)
T ss_pred             CCCcccceEEEEEEecCCCEEEEE--ecccccccCCeEEEhHHHHHHHHHHHHHH
Confidence            799999999999999777654443  33322211224567766666555555443

>PTZ00107 hexokinase; Provisional

Probab=88.08  E-value=2.7  Score=46.23  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=41.4

Q ss_pred             eEEEEEcCCcceEEEEEcCCCC-EEEEEEee--cccccCCC---c--cccCHHHHHHHHHHHHHHHHHHc
Q 007076           56 VFLGVDVGTGSARAGLFDESGK-LLGSASSP--IQIWKEGD---C--IEQSSTDIWHAICAAVDSACSLA  117 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~-il~~~~~~--~~~~~~~g---~--~e~dp~~~~~~~~~~l~~~~~~~  117 (619)
                      .+++||+|+|+.|++++...|+ .....+..  +|...-.|   .  -+...+++|+.+.++|.+.+++.
T Consensus        75 ~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~  144 (464)
T PTZ00107         75 VYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEEN  144 (464)
T ss_pred             eEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhc
Confidence            4899999999999999996654 32222222  22111001   1  12257899999999999999864

>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12

Probab=87.85  E-value=1.2  Score=45.45  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC--CcCCH-HHHHHHHhhhCCceeecCCCCccchHHHHHHHh
Q 007076          488 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG--LAKNP-LFLQQHADIIGCPIILPRENESVLLGAAILGAV  559 (619)
Q Consensus       488 ~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG--~a~s~-~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~  559 (619)
                      ++++.|++++.+..++-.  +  .+..+|+++|.  .++++ .+...+.+.|+.+|.+... +.+|.|+|++|--
T Consensus       242 ~dal~~~vameIasLl~l--~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~d  311 (326)
T TIGR03281       242 LDSLAMSVAMEIASLGLL--D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAED  311 (326)
T ss_pred             HHHHHHHHHHHHHhheec--c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHHH
Confidence            569999999887766533  2  23347999998  77888 9999999999999988775 7889999999863

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.

>PRK13324 pantothenate kinase; Reviewed

Probab=87.67  E-value=1.8  Score=43.81  Aligned_cols=63  Identities=19%  Similarity=0.373  Sum_probs=40.2

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeec-ccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|.||+|-|++|.+++|. ++++...+.++ .       .....+++..    .++.+++..+.+..+|..|.+|+
T Consensus         2 iL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~~-------~~~t~de~~~----~l~~~~~~~~~~~~~i~~viisS   65 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDG-DRIVSQIRYATSS-------VDSTSDQMGV----FLRQALRENSVDLGKIDGCGISS   65 (258)
T ss_pred             EEEEEeCCCceEEEEEEC-CEEEEEEEEecCc-------cccchHHHHH----HHHHHHHhcCCCccCCCeEEEEe
Confidence            789999999999999993 45555444443 2       1223344443    34555555455556788888876

>PRK13331 pantothenate kinase; Reviewed

Probab=87.49  E-value=1.9  Score=43.37  Aligned_cols=56  Identities=13%  Similarity=0.080  Sum_probs=36.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|.||||-|++|.++||. .+++..-+  +..       ....+         ++.++...+.+..+|.++.+|+
T Consensus         9 ~L~iDiGNT~~~~g~f~~-~~~~~~~r--t~~-------~~t~d---------~~~~l~~~~~~~~~i~~~iisS   64 (251)
T PRK13331          9 WLALMIGNSRLHWGYFSG-ETLVKTWD--TPH-------LDESI---------IQLLLPGQTLLIVAPNPLVIAS   64 (251)
T ss_pred             EEEEEeCCCcEEEEEEEC-CEEEEEEE--cCC-------cchHH---------HHHHHHHcCCCccccCEEEEEe
Confidence            899999999999999994 35554322  221       11111         4555565555666788888876

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=87.11  E-value=2.8  Score=44.29  Aligned_cols=57  Identities=16%  Similarity=0.127  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-C-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076          488 YLATVQGIAYGTRHIVEHCNA-H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  544 (619)
Q Consensus       488 ~rAvlEgiaf~~~~~l~~l~~-~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~  544 (619)
                      .+.+++-++-+++..++.+.. . +.++++|+++||+++-+-+...++..||.||++..
T Consensus       256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~  314 (348)
T TIGR01175       256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN  314 (348)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence            458889999888888887744 2 35789999999999999999999999999998765

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=86.95  E-value=1.5  Score=46.27  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             CeEEEEEcCCcceEEEEEcCC-C--CEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~-g--~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      ..++|||||++++|++.+... +  +++.....+.|... ..| .-.|++.+-    ++|++++++.+.... -..+++.
T Consensus         3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g-~i~d~~~~~----~~l~~~~~~~~~~~k-~v~~alp   76 (348)
T TIGR01175         3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEG-HIVEYQAVA----EALKELLSELGINTK-KAATAVP   76 (348)
T ss_pred             CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCC-CccCHHHHH----HHHHHHHHHcCCCcc-eEEEEec
Confidence            358999999999999999843 3  34444455555322 223 234665554    455555555554322 3466665


Q ss_pred             Cc
Q 007076          131 AT  132 (619)
Q Consensus       131 ~~  132 (619)
                      +.
T Consensus        77 ~~   78 (348)
T TIGR01175        77 GS   78 (348)
T ss_pred             CC
Confidence            53

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>PRK09604 UGMP family protein; Validated

Probab=86.78  E-value=1.6  Score=45.96  Aligned_cols=78  Identities=17%  Similarity=0.278  Sum_probs=53.0

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeec-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~-~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      +||||-.+..+-++|+|.+++++....... .... ..|.. +.....--+.+...+++++++.++++.+|.+|+++.-+
T Consensus         3 iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GP   82 (332)
T PRK09604          3 ILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGP   82 (332)
T ss_pred             EEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence            899999888899999987768887654322 1111 12221 22223345567777888888888888999999998644


Q ss_pred             c
Q 007076          134 S  134 (619)
Q Consensus       134 ~  134 (619)
                      |
T Consensus        83 G   83 (332)
T PRK09604         83 G   83 (332)
T ss_pred             C
Confidence            3

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=86.76  E-value=3.4  Score=44.72  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCC
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE  545 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~  545 (619)
                      ++..+.++.+|-+|=+..-++.-++...........|+++||+++-+-...+-.++|++||++...
T Consensus       288 t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P  353 (418)
T COG0849         288 TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP  353 (418)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence            456666666777776666665444433221335678999999999999999999999999987554

>PRK13326 pantothenate kinase; Reviewed

Probab=86.06  E-value=2.4  Score=43.03  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHH
Q 007076          490 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG  557 (619)
Q Consensus       490 AvlEgiaf~~~~~l~~l~~~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA  557 (619)
                      .++.|.+..+..+++.+++. +. .-.|+++||.+      ++++..+..+..+  .++-+..|-+++.
T Consensus       194 Gi~~g~~~~I~g~i~~~~~e~~~-~~~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~GL~~i~  253 (262)
T PRK13326        194 GVIYQYKYLIEGVYHDLKRNYDR-EFNLIITGGNS------NLILPLISVDFIF--NLYLTLEGIRILG  253 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCH------HHHHhhCCCCcEE--CcccHHHHHHHHH
Confidence            67777777777777777653 32 34699999965      4566666766655  3556666665543

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=85.70  E-value=1.4  Score=51.07  Aligned_cols=75  Identities=21%  Similarity=0.321  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC---CceeecC----CCCccchH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---CPIILPR----ENESVLLG  552 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg---~pV~~~~----~~e~~alG  552 (619)
                      .+.+++.   ++.++++-.+.++++.+.+. ..+++|+++||.++|..+++.+.+.++   ..|..+.    .+.+.++|
T Consensus       630 ~~~~IAa---~fh~tla~~L~~~a~~~~~~-~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislG  705 (711)
T TIGR00143       630 DRSKIAH---IAHKFVASGLVEIATAIAVP-FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLG  705 (711)
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHH
Confidence            4555543   77777777666666655431 246789999999999999999998875   6675543    34566788


Q ss_pred             HHHHHH
Q 007076          553 AAILGA  558 (619)
Q Consensus       553 AAllA~  558 (619)
                      .|++|+
T Consensus       706 Qa~~a~  711 (711)
T TIGR00143       706 QAVAAA  711 (711)
T ss_pred             HHHHhC
Confidence            877663

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>COG3426 Butyrate kinase [Energy production and conversion]

Probab=85.70  E-value=2.6  Score=42.48  Aligned_cols=56  Identities=23%  Similarity=0.406  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhC--CceeecC
Q 007076          489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR  544 (619)
Q Consensus       489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~  544 (619)
                      +-++++++|++..-+-.+.. ...+++-|+++||.+++..++..+.+-+.  .||.+.+
T Consensus       272 ~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~P  330 (358)
T COG3426         272 KLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYP  330 (358)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecC
Confidence            46788899988876665544 45689999999999999999999999876  5887755

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=85.66  E-value=3.4  Score=42.26  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEE
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGS   81 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~   81 (619)
                      .+|||+|+|-+|.+.+|++++++..
T Consensus         2 ~iGiDiGgT~~Kiv~~~~~~~~~f~   26 (279)
T TIGR00555         2 RIGIDIGGTLIKVVYEEPKGRRKFK   26 (279)
T ss_pred             eEEEEeCcceEEEEEEcCCCcEEEE
Confidence            5899999999999999998887754

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=85.54  E-value=2.3  Score=44.83  Aligned_cols=70  Identities=13%  Similarity=0.138  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCCCCccchHHHHHHHhh
Q 007076          488 YLATVQGIAYGTRHIVEH-CNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVA  560 (619)
Q Consensus       488 ~rAvlEgiaf~~~~~l~~-l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~~e~~alGAAllA~~~  560 (619)
                      .+++.|.++-.+.+.++. +++.  .+++|+++||.+.|..+++.+.++.   +.+++.++..- +.=-|||+|..|
T Consensus       240 aasfq~~v~~~L~~k~~~a~~~~--~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~-ctDNaaMIa~~g  313 (345)
T PTZ00340        240 CFSLQETIFAMLVEVTERAMSHC--GSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERY-CIDNGAMIAYAG  313 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHh-hhhhHHHHHHHH
Confidence            347777777666655443 3333  4678999999999999999999986   77888776332 222455666554

>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]

Probab=84.65  E-value=1.4  Score=44.34  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEee
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSP   85 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~   85 (619)
                      |+.++++.||=|||+.|+-+++.+|+++.+.+-.
T Consensus         2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~   35 (306)
T COG3734           2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRSE   35 (306)
T ss_pred             CCCceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence            5557799999999999999999999988865443

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=83.60  E-value=3.8  Score=43.30  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=36.3

Q ss_pred             EEEcCCcceEEEEEcCCCC---EEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           59 GVDVGTGSARAGLFDESGK---LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        59 gIDiGTTsiKa~l~d~~g~---il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      |||||+.++|++-++..++   +......++|.-. ..| .-.|++.+-++    |++++++.+.. .+-..+++.++
T Consensus         1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~----L~~~~~~~~~~-~k~v~~aip~~   72 (340)
T PF11104_consen    1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEA----LKELLKENKIK-GKKVVLAIPGS   72 (340)
T ss_dssp             EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHH----HHHHHHHHT-----EEEEEE-GG
T ss_pred             CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHH----HHHHHHHcCCC-CCeEEEEeCCC
Confidence            8999999999999996543   3445566666322 111 23567666555    55555544442 34456777663

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=83.48  E-value=3.1  Score=42.88  Aligned_cols=59  Identities=14%  Similarity=0.140  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-C-CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCC
Q 007076          487 LYLATVQGIAYGTRHIVEHCNAH-G-HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE  545 (619)
Q Consensus       487 ~~rAvlEgiaf~~~~~l~~l~~~-g-~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~  545 (619)
                      ..+-+++.+.-.+++.++.+-.. + ..+++|+++||+++-.-+-+++.+-++.|+.+...
T Consensus       260 vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP  320 (354)
T COG4972         260 VLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP  320 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence            34688999999999999977543 3 58899999999999999999999999999988663

>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=83.45  E-value=2.9  Score=47.06  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=45.0

Q ss_pred             CCCcCEEEEecCCcCCHHHHHHHHhhhCCcee--ecCCCCccchHHHHHHHhhccccC
Q 007076          510 GHKIDTLLACGGLAKNPLFLQQHADIIGCPII--LPRENESVLLGAAILGAVAAKRYS  565 (619)
Q Consensus       510 g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~--~~~~~e~~alGAAllA~~~~G~~~  565 (619)
                      ...+..|+++||.++-|.+.+++.|.|+-.-.  -....|+.|+|||+.|+.-.|...
T Consensus       332 k~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~  389 (620)
T KOG0101|consen  332 KSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKS  389 (620)
T ss_pred             ccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcc
Confidence            34688999999999999999999999985222  223668999999999998766543

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=83.24  E-value=4  Score=46.03  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=54.9

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      ++||||-.+..+-++|++.+|+++......+. .+.+|.. +.....=.+.+...++++++++++...+|.+|+++..+|
T Consensus         2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gPg   80 (535)
T PRK09605          2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYK-PPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPG   80 (535)
T ss_pred             EEEEEEccccceEEEEEeCCCcEEEEEEeecc-CCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCCC
Confidence            39999999999999999966788877654421 1122322 222233456677888888888888889999999986543

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=83.14  E-value=2.6  Score=43.99  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh----CCceeecCC----CCccchHHHHHHH-
Q 007076          488 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII----GCPIILPRE----NESVLLGAAILGA-  558 (619)
Q Consensus       488 ~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl----g~pV~~~~~----~e~~alGAAllA~-  558 (619)
                      +.|.+|+++-.+...+-.    -.+++.|+++|..++++.+...+.+.|    +.+|.....    ...+|.|+|++|- 
T Consensus       240 ~ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g  315 (343)
T PF07318_consen  240 WEAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG  315 (343)
T ss_pred             HHHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence            568899988666544332    235678999999999988776655555    546654332    2348999999984 


Q ss_pred             hhccccCCH
Q 007076          559 VAAKRYSSL  567 (619)
Q Consensus       559 ~~~G~~~~~  567 (619)
                      .+-|.|..+
T Consensus       316 laGG~~~~l  324 (343)
T PF07318_consen  316 LAGGRYKEL  324 (343)
T ss_pred             hhcccHHHH
Confidence            444665544

The function of this family is unknown.

>PRK09604 UGMP family protein; Validated

Probab=83.00  E-value=5  Score=42.26  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecCC
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE  545 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~  545 (619)
                      +.++++   ++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+   |.+|.+++.
T Consensus       227 ~~~iA~---s~q~~l~~~l~~~~~~~~~~-~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~  290 (332)
T PRK09604        227 KADIAA---SFQAAVVDVLVIKTKRALKQ-TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPL  290 (332)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence            356654   66666666666665554331 24678999999999999999999998   788877653

>PTZ00297 pantothenate kinase; Provisional

Probab=82.56  E-value=33  Score=43.33  Aligned_cols=73  Identities=14%  Similarity=0.261  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CcCCHHHHHHHHhhh------CCceeecC-CCCccchH
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADII------GCPIILPR-ENESVLLG  552 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG-~a~s~~~~Qi~Advl------g~pV~~~~-~~e~~alG  552 (619)
                      ++|+++   +++-.|.+++-++-- |......+++|+.+|+ ...|+..++.++..+      ++....++ ....+|+|
T Consensus      1364 ~~Di~~---sll~~is~nIgqia~-l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~G 1439 (1452)
T PTZ00297       1364 AIDIVR---SLLNMISSNVTQLAY-LHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALG 1439 (1452)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHH-HHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhh
Confidence            677665   999999999887643 3222346789999999 557899999999886      34444444 44588999


Q ss_pred             HHHHH
Q 007076          553 AAILG  557 (619)
Q Consensus       553 AAllA  557 (619)
                      |++..
T Consensus      1440 a~~~~ 1444 (1452)
T PTZ00297       1440 CATLD 1444 (1452)
T ss_pred             hhhcC
Confidence            98753

>TIGR00671 baf pantothenate kinase, type III

Probab=82.28  E-value=4  Score=40.91  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCC
Q 007076          490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN  525 (619)
Q Consensus       490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s  525 (619)
                      .++.|.+..+..+++.+++.-...-+|+++||.++-
T Consensus       184 G~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~  219 (243)
T TIGR00671       184 GAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY  219 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence            677777777777777775531123479999997653

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=82.27  E-value=3.3  Score=44.90  Aligned_cols=91  Identities=12%  Similarity=0.138  Sum_probs=50.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCC----ceeecCCCCccchH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGC----PIILPRENESVLLG  552 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~----pV~~~~~~e~~alG  552 (619)
                      +..|+.    ++.-+++--..-++-.+++.|+   ++++++++|-.-  ....--.|.++|.    +.++.. -..++++
T Consensus       462 TekDi~----e~~kAkgAirAG~~tL~~kaGie~eDie~~ymAGAfG--tyid~~~A~~iGliPd~~~kV~q-~GNtsla  534 (614)
T COG3894         462 TEKDIE----EAGKAKGAIRAGHMTLIEKAGIELEDIERIYMAGAFG--TYIDAKKAMVIGLIPDCDLKVKQ-IGNTSLA  534 (614)
T ss_pred             eHHHHH----HHHHHHHHHHHHHHHHHHHcCCChhhhhheeeccccc--cccchhHhheeeccCCcchhhhh-hccchHH
Confidence            345653    5555554333334445566775   466789998632  1222234555553    333322 2345677


Q ss_pred             HHHHHHhhccccCCHHHHHHHhhcC
Q 007076          553 AAILGAVAAKRYSSLIEAMKAMNAA  577 (619)
Q Consensus       553 AAllA~~~~G~~~~~~~a~~~~~~~  577 (619)
                      -|..|...-+....+++.++++...
T Consensus       535 gAr~aLlse~rr~Eie~ia~~I~~i  559 (614)
T COG3894         535 GAREALLSEGRRDEIEDIASKIEYI  559 (614)
T ss_pred             HHHHHHhchhhHHHHHHHHHHHHHH
Confidence            7777777777777777776666543

>TIGR03723 bact_gcp putative glycoprotease GCP

Probab=82.05  E-value=4.5  Score=42.22  Aligned_cols=78  Identities=17%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeec-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~-~~~~-~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      +|+||-.+..+-++|+|.+++++....... .... .+|-. +.....--+.+...+++++++.+....+|.+|+++..+
T Consensus         1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GP   80 (314)
T TIGR03723         1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGP   80 (314)
T ss_pred             CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence            489999999999999986555776654422 1111 22222 22234445667777888888888888899999998755


Q ss_pred             c
Q 007076          134 S  134 (619)
Q Consensus       134 ~  134 (619)
                      |
T Consensus        81 G   81 (314)
T TIGR03723        81 G   81 (314)
T ss_pred             C
Confidence            4

This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas

>PRK03011 butyrate kinase; Provisional

Probab=81.66  E-value=4.3  Score=43.19  Aligned_cols=66  Identities=21%  Similarity=0.336  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhC--CceeecCCC---CccchHHH
Q 007076          489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPREN---ESVLLGAA  554 (619)
Q Consensus       489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~~~---e~~alGAA  554 (619)
                      +.+++-.++.+...+-.+.. .+.+++.|+++||.+.++.+.+.+.+.+.  .||.+....   ++.++||+
T Consensus       271 ~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~  342 (358)
T PRK03011        271 KLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGAL  342 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHH
Confidence            46788888888877665544 33368899999999988888877666654  377655422   24455544

>COG4020 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.64  E-value=5.1  Score=39.66  Aligned_cols=61  Identities=16%  Similarity=0.249  Sum_probs=39.6

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEE-EeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSA-SSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~-~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      .++|||-|||.+|++++|.++.+..+- +.+..        +     .  +=...++++-.++++..++|..|+++-
T Consensus         4 ~fVGiDHGTsgi~~ai~d~e~~~~Fklgrae~~--------~-----~--~ek~~L~~l~de~~i~l~eidlialtY   65 (332)
T COG4020           4 MFVGIDHGTSGIKFAIYDGEKDPEFKLGRAELR--------K-----V--AEKSLLRELEDEARIALEEIDLIALTY   65 (332)
T ss_pred             EEEeecCCCcceEEEEEcCCCCceEEechhhhh--------h-----h--hHHHHHHHhhHhhCCccccceEEEEee
Confidence            489999999999999999777654432 11111        0     0  012345555555566678899898864

>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=81.04  E-value=4.5  Score=46.55  Aligned_cols=74  Identities=27%  Similarity=0.300  Sum_probs=45.2

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc-
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC-  133 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~-  133 (619)
                      .+.+|||+|+|.+-++++|+++.++...+.++.           |+.....+.+.++.+.....  ..+|..|-++++. 
T Consensus         2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt-----------P~~~~~~~~~~~~~~~~~~~--~~~i~~v~~gTT~a   68 (674)
T COG0145           2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-----------PDLPSGIVNAGIRLALELLE--GSEVDLVVHGTTLA   68 (674)
T ss_pred             ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC-----------CCchhhHHHHHHHHHhhccc--cccccEEEEeccHH
Confidence            468999999999999999988767776665542           33333333444433332211  1467777777752 


Q ss_pred             --ccccCCCC
Q 007076          134 --SLVDADGS  141 (619)
Q Consensus       134 --~~vd~~G~  141 (619)
                        .++-++|.
T Consensus        69 TNallerkG~   78 (674)
T COG0145          69 TNALLERKGL   78 (674)
T ss_pred             HHHHHhccCc
Confidence              24444444

>PLN02666 5-oxoprolinase

Probab=80.97  E-value=5.3  Score=49.34  Aligned_cols=83  Identities=12%  Similarity=0.074  Sum_probs=51.4

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCH-HHHHHHHHHHHHHHH-----HHcCCCCCCEEEE
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSAC-----SLANVDGEEVKGV  127 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp-~~~~~~~~~~l~~~~-----~~~~~~~~~I~aI  127 (619)
                      +.|.+|||+|+|-+-++++|.++.-+...+.+.. .      ..|+ +.+.+.+..+++.++     ...++++.+|..|
T Consensus         8 ~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st-t------p~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v   80 (1275)
T PLN02666          8 RKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV-D------PANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI   80 (1275)
T ss_pred             CCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC-C------CCChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence            3579999999999999999977653444444431 0      1333 335556555555543     2224455678888


Q ss_pred             EEcCcc---ccccCCCCee
Q 007076          128 GFAATC---SLVDADGSPV  143 (619)
Q Consensus       128 gis~~~---~~vd~~G~pl  143 (619)
                      ..+++.   .++..+|..+
T Consensus        81 ~hGTT~atNAllerkGa~v   99 (1275)
T PLN02666         81 RMGTTVATNALLERKGERI   99 (1275)
T ss_pred             EEechHHHHHHHhccCCcE
Confidence            888763   2555566544

>PLN02902 pantothenate kinase

Probab=80.80  E-value=47  Score=39.17  Aligned_cols=166  Identities=13%  Similarity=0.083  Sum_probs=93.7

Q ss_pred             eEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 007076          349 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN  428 (619)
Q Consensus       349 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~  428 (619)
                      -+++++||...+..+..                 ++.|--.|++.-||..+-=+...+            .+...|+++-
T Consensus       216 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LL------------tg~~sFdEll  266 (876)
T PLN02902        216 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTNVGGGTYWGLGRLL------------TKCKSFDELL  266 (876)
T ss_pred             eEEEEcCCceEEEEEec-----------------CCcEEEecccccccHhHHHHHHHH------------cCCCCHHHHH
Confidence            47889998765443322                 123334445555555442222222            2456677776


Q ss_pred             HHHHhhhhccCCCCccCCCCceEEcccCCCCC---CCCCCCCCcEeEEc--CC-----CCCCHHHHHHHHHHHHHHHHHH
Q 007076          429 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MT-----LDSSEKQLALLYLATVQGIAYG  498 (619)
Q Consensus       429 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r---~P~~d~~a~g~~~G--l~-----~~~~~~~l~~~~rAvlEgiaf~  498 (619)
                      ++++.=..         ..-.+ .+-.+.|..   .+.-..++-++-+|  ..     .+..++|+++   +++--|+++
T Consensus       267 ~LA~~Gd~---------~~vDl-lVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiar---SLL~mIs~N  333 (876)
T PLN02902        267 ELSQRGDN---------SAIDM-LVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISL---SLLRMISYN  333 (876)
T ss_pred             HHHhcCCc---------cccCe-eeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHH---HHHHHHHHH
Confidence            66643110         01123 345566531   12234556666666  21     1235788765   999999999


Q ss_pred             HHHHHHHHHhCCCCcCEEEEecCCc-CCHHHHHHHHhhhC------CceeecC-CCCccchHHHHHH
Q 007076          499 TRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADIIG------CPIILPR-ENESVLLGAAILG  557 (619)
Q Consensus       499 ~~~~l~~l~~~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg------~pV~~~~-~~e~~alGAAllA  557 (619)
                      +-++--...+ ...+++|+.+|... .++.-|+.++-.+.      +....+. ....+|+||.+..
T Consensus       334 IGqiA~L~A~-~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~  399 (876)
T PLN02902        334 IGQISYLNAL-RFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSY  399 (876)
T ss_pred             HHHHHHHHHH-HcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcC
Confidence            8887543322 23578999999977 45777787776542      3344444 3457899998654

>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=80.74  E-value=1.3  Score=48.36  Aligned_cols=65  Identities=22%  Similarity=0.300  Sum_probs=52.5

Q ss_pred             HHHHHHHhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCC-ceeecCCCCccchHHHHHHHhhccccC
Q 007076          501 HIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAILGAVAAKRYS  565 (619)
Q Consensus       501 ~~l~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~e~~alGAAllA~~~~G~~~  565 (619)
                      .+-..|+..+   -++++|.+.||+++-|...+.+.++||+ |=.-+...|++|+|||+.+++-.|..+
T Consensus       339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVk  407 (640)
T KOG0102|consen  339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVK  407 (640)
T ss_pred             HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcccc
Confidence            3455666654   3688999999999999999999999996 666667889999999999887666544

>TIGR03722 arch_KAE1 universal archaeal protein Kae1

Probab=80.72  E-value=4.7  Score=42.23  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=50.7

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~-e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      ||||-.+..+-++|++.+++++...+.... ...+|.. +.....=-+.+...+++++++++++..+|.+|+++..+
T Consensus         1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gP   76 (322)
T TIGR03722         1 LGIEGTAHTFGVGIVDEDGEILANVSDTYV-PEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGP   76 (322)
T ss_pred             CEEeccccceEEEEEECCCeEEEEEEeecc-cCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence            588888888889999877788776554332 1122332 22233334556677888888888888999999997643

This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.

>PRK13320 pantothenate kinase; Reviewed

Probab=80.51  E-value=5.5  Score=39.97  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHH
Q 007076          490 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL  556 (619)
Q Consensus       490 AvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAll  556 (619)
                      .++-|.+..+..+++.+++ .+ + -.|+++||.+      +++++.+..++.+  .++-...|-..+
T Consensus       182 G~~~~~~~~i~~~i~~~~~~~~-~-~~vi~TGG~a------~~l~~~l~~~~~~--~p~Lvl~GL~~~  239 (244)
T PRK13320        182 GVVWGCVAEIEGLIEAYKSKLP-E-LLVILTGGDA------PFLASRLKNTIFA--DEHAVLKGLNRI  239 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECCCH------HHHHHhcCCccEE--CcchHHHHHHHH
Confidence            5556666666666666655 33 2 4799999985      4566666766654  244555565444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	619
3gg4_A	554	The Crystal Structure Of Glycerol Kinase From Yersi		1e-139
3qdk_A	572	Structural Insight On Mechanism And Diverse Substra		2e-28
2d4w_A	504	Crystal Structure Of Glycerol Kinase From Cellulomo		4e-14
2zf5_O	497	Crystal Structure Of Highly Thermostable Glycerol K		1e-13
2dpn_A	495	Crystal Structure Of The Glycerol Kinase From Therm		8e-12
1bu6_O	501	Crystal Structures Of Escherichia Coli Glycerol Kin		3e-07
1bwf_Y	501	Escherichia Coli Glycerol Kinase Mutant With Bound		3e-07
1gla_G	501	Structure Of The Regulatory Complex Of Escherichia		3e-07
3ezw_A	526	Crystal Structure Of A Hyperactive Escherichia Coli		4e-07
1xup_O	487	Enterococcus Casseliflavus Glycerol Kinase Complexe		9e-07
3h45_X	506	Glycerol Kinase H232e With Ethylene Glycol Length =		9e-07
3flc_O	518	Crystal Structure Of The His-Tagged H232r Mutant Of		9e-07
3h3n_X	506	Glycerol Kinase H232r With Glycerol Length = 506		1e-06
3d7e_O	505	Enterococcus Casseliflavus Glycerol Kinase Mutant H		1e-06
1r59_O	505	Enterococcus Casseliflavus Glycerol Kinase Length =		1e-06
2itm_A	484	Crystal Structure Of The E. Coli Xylulose Kinase Co		1e-06
2itm_A	484	Crystal Structure Of The E. Coli Xylulose Kinase Co		3e-04
3g25_A	501	1.9 Angstrom Crystal Structure Of Glycerol Kinase (		2e-06
4e1j_A	520	Crystal Structure Of Glycerol Kinase In Complex Wit		4e-05
4e1j_A	520	Crystal Structure Of Glycerol Kinase In Complex Wit		7e-04
3gbt_A	504	Crystal Structure Of Gluconate Kinase From Lactobac		8e-05
3hz6_A	511	Crystal Structure Of Xylulokinase From Chromobacter		2e-04
3ifr_A	508	The Crystal Structure Of Xylulose Kinase From Rhodo		2e-04

>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia Pseudotuberculosis Length = 554

Iteration: 1
 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/565 (45%), Positives = 357/565 (63%), Gaps = 27/565 (4%)
Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSA 113
           S F+GVDVGTGSARAG+FD  G+ +G AS  I  +K + D +EQSS +IW A+C AV  A
Sbjct: 5   SYFIGVDVGTGSARAGVFDLQGRXVGQASREITXFKPKADFVEQSSENIWQAVCNAVRDA 64
Query: 114 CSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 171
            + A+++  +VKG+GF ATCSLV  D +G+P++VS +G + +N+IVW DHRA+ QAE+IN
Sbjct: 65  VNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWXDHRAITQAERIN 124
Query: 172 SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 231
           +   PVL++ GG +SPE Q PKLLW+K++   +WS V    DL D+L++RAT D+TRSLC
Sbjct: 125 ATKHPVLEFVGGVISPEXQTPKLLWLKQHXPNTWSNVGHLFDLPDFLTWRATKDETRSLC 184
Query: 232 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 291
           +TVCKWTYLGH                  WD  +++ +GL DL+D + AKIG +V   G 
Sbjct: 185 STVCKWTYLGHEDR---------------WDPSYFKLVGLADLLDNNAAKIGATVKPXGA 229
Query: 292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXXICHRMV 351
           PLG GL+  AA E GL+PGT V  S+IDAHAG +G++ +                  R+ 
Sbjct: 230 PLGHGLSQRAASEXGLIPGTAVSVSIIDAHAGTIGILGA------SGVTGENANFDRRIA 283
Query: 352 LVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVXXXX 411
           L+ GTST H A SR+  FI G+WGP++SA++P++WL EGGQSATGAL+D+II++H     
Sbjct: 284 LIGGTSTAHXAXSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPA 343
Query: 412 XXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 471
                     +++E LN  L     E  +  +A LT DIH LP FHGNRSP A+P   GI
Sbjct: 344 LLEQAKNKGETIYEALNYILRQXAGEPEN--IAFLTNDIHXLPYFHGNRSPRANPNLTGI 401
Query: 472 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ 531
           I G+ L ++ +  AL YLAT+Q +A GTRHI+E  N +G+ IDT  A GG  KNP+F+Q+
Sbjct: 402 ITGLKLSTTPEDXALRYLATIQALALGTRHIIETXNQNGYNIDTXXASGGGTKNPIFVQE 461
Query: 532 HADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSLIEAMKAMNAAGQVIHPSKDPKVKK 591
           HA+  GC  +LP E+E+               + SL EA  A +  G+ + P  + K+K 
Sbjct: 462 HANATGCAXLLPEESEAXLLGSAXXGTVAAGVFESLPEAXAAXSRIGKTVTPQTN-KIKA 520
Query: 592 YHDAKYLIFRELFEQQVSQRSIMAQ 616
           Y+D KY +F + +      +++  +
Sbjct: 521 YYDRKYRVFHQXYHDHXRYQALXQE 545

>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate Selection Strategy Of Ribulokinase Length = 572

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 212/506 (41%), Gaps = 68/506 (13%)
Query: 58  LGVDVGTGSARAGLFDES-GKLLGSASSP-----IQIWKEGDCIE-------QSSTDIWH 104
           +GVD GT S RA L D S G+ L    +P     I  +     I+       Q   D   
Sbjct: 8   IGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVE 67
Query: 105 AICAAVDSACSLANVDGEEVKGVGFAAT-CSL--VDADGSPVSV--SWNGDSRRNIIVWM 159
            +  +V +    + VD ++V G+G   T C++  VD +G P+ +   +  +    + +W 
Sbjct: 68  VLTTSVPAVMKESGVDADDVIGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVKLWK 127
Query: 160 DHRAVKQAEKINS----RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLS 215
            H A  +A  IN     R    L   GG +S E    K+  + +  ++ ++   ++++ +
Sbjct: 128 HHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKVWQILDEAEDVYNRTDQFLEAT 187
Query: 216 DWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLI 275
           DW+  + TG   ++ CT   K  +           +G+   E     D   E +    L 
Sbjct: 188 DWIVSQMTGKIVKNSCTAGYKAIW--------HKREGYPSNEFFKALDPRLEHLTTTKL- 238
Query: 276 DGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXX 335
                   R    P      GL P  A+++GL PG  V    +DAHA    V  + P   
Sbjct: 239 --------RGDIVPLGERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPG-- 288
Query: 336 XXXXXXXXXXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSAT 395
                        ++V+  GTS CHM +   +  + G+ G     ++P +   E GQSA 
Sbjct: 289 -------------KLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLGYEAGQSAV 335
Query: 396 GALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPD 455
           G +  + ++ H              V++  LL     S +    S  +A        L  
Sbjct: 336 GDIFAWFVK-HGVSAATFDEAQEKGVNVHALLEEK-ASQLRPGESGLLA--------LDW 385
Query: 456 FHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT 515
           ++GNRS + D +  G++ G TL +  ++   +Y A ++  A+GTR IV+  +  G ++  
Sbjct: 386 WNGNRSILVDTELSGMLLGYTLQTKPEE---IYRALLEATAFGTRAIVDAFHGRGVEVHE 442
Query: 516 LLACGGL-AKNPLFLQQHADIIGCPI 540
           L ACGGL  KN L +Q  AD+    I
Sbjct: 443 LYACGGLPQKNHLLMQIFADVTNREI 468

>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 109/512 (21%), Positives = 193/512 (37%), Gaps = 98/512 (19%)
Query: 58  LGVDVGTGSARAGLFDESGKLLGSAS-SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA +FD SG++  +      QI+     +E +   IW+ +   V  A + 
Sbjct: 5   LAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR 64
Query: 117 ANVDGEEVKGVGFAATCSLVDADGSPVSVSWN---GDSRRNIIVWMDHRAVKQAEKINSR 173
            N+  E++  VG          +    +V W+   G    N IVW D R  K  +++   
Sbjct: 65  GNLTHEDIAAVGI--------TNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGD 116
Query: 174 N--SPVLQYCGGAVSPEMQPPKLLWVKENLQ------ESWSMVFRWMDLSDWLSYRATGD 225
                     G  ++     PK+ W+ +N++      E   ++F   D   W+ +  TG 
Sbjct: 117 EGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDT--WVLWNMTGG 174
Query: 226 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG--LGDLIDGHHAKIG 283
               +  T           +   +     D++   W ++   ++G  L  L D     I 
Sbjct: 175 TEGGVHVT----------DVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPD-----IR 219
Query: 284 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXX 343
            S    GH           +  GLVPG P+   L D  A   G                 
Sbjct: 220 SSSEVYGH----------GRPRGLVPGVPIAGILGDQQAATFG-----QACFEVGQAKNT 264
Query: 344 XXICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYII 403
               + ++L  GT      +S+N L        +     P  +  EG  + TG+L+ ++ 
Sbjct: 265 YGTGNFLLLNTGTEKV---MSKNGLLTTVC---YKIGDAPAVYALEGSIAVTGSLVQWLR 318
Query: 404 ENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDI------HVLPDFH 457
           +N               + +FE             ++P V  L   +      + +P F 
Sbjct: 319 DN---------------LGMFE-------------DAPDVEWLAGKVQDNGGAYFVPAFS 350
Query: 458 GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL 516
           G  +P   P ++G + G+T   +   +A    A ++  A+ +R +V+  NA  G  +  L
Sbjct: 351 GLFAPYWRPDARGALVGLTRYVNRNHIA---RAALEATAFQSREVVDAMNADSGVDLTEL 407
Query: 517 LACGGLAKNPLFLQQHADIIGCPIILPRENES 548
              GG+  N L +Q  AD +G  ++ P+  E+
Sbjct: 408 RVDGGMVANELLMQFQADQLGVDVVRPKVAET 439

>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 185/503 (36%), Gaps = 91/503 (18%)
Query: 58  LGVDVGTGSARAGLFDESGKL--LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           L +D GT SARA +FD    +  +G    P Q +     +E +  +IW A   A+  A  
Sbjct: 6   LSLDEGTTSARAIIFDRESNIHGIGQYEFP-QHYPRPGWVEHNPEEIWDAQLRAIKDAIQ 64
Query: 116 LANVDGEEVKGVGFA---ATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 172
            A ++  ++  +G      T  + D DG P+          N IVW   R  +  E+I  
Sbjct: 65  SARIEPNQIAAIGVTNQRETTLVWDKDGKPLY---------NAIVWQCRRTAEMVEEIKR 115
Query: 173 RNSPVLQYCGGAV-SPEMQPPKLLWVKENL------QESWSMVFRWMDLSDWLSYRATGD 225
               +++   G V        KL W+ +N+       E   ++F  +D   +L YR TG+
Sbjct: 116 EYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDT--FLIYRLTGE 173
Query: 226 DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS 285
                        Y   +     N      ++   WDDE  E   L D+ +    ++  S
Sbjct: 174 HVTD---------YSNASRTMLFN------IKKLDWDDELLE---LFDIPESVLPEVRES 215
Query: 286 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPXXXXXXXXXXXXX 345
               G+           KEL L    PV     D  A   G                   
Sbjct: 216 SEVYGY---------TKKEL-LGAEIPVSGDAGDQQAALFG------QAAFEAGMVKATY 259
Query: 346 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 405
                +LV   +T  M +  + L     WG   +  V   +  EG    TGA + ++ + 
Sbjct: 260 GTGSFILV---NTDKMVLYSDNLLTTIAWGL--NGRVS--YALEGSIFVTGAAVQWLRDG 312
Query: 406 HVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 465
                         H S  E L   LES              E ++ +P F G  +P  D
Sbjct: 313 ---------IKIIKHASETEELATKLES-------------NEGVYFVPAFVGLGAPYWD 350
Query: 466 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 525
             ++GII G+T  +  + LA    AT++ IAY TR +V+       +I  L   GG   N
Sbjct: 351 QFARGIIIGITRGTGREHLA---RATLEAIAYLTRDVVDEMEKL-VQIKELRVDGGATAN 406
Query: 526 PLFLQQHADIIGCPIILPRENES 548
              +Q  ADI+   +I P   E+
Sbjct: 407 DFLMQFQADILNRKVIRPVVKET 429

>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T D++ +P F G  +P  DP ++G + G+T  +S   LA    A ++G+A+  R +V   
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDVVLAM 391
Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 548
               G ++  L A GG+A+N LFL+  AD++G P+ +P   E+
Sbjct: 392 EEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTET 434

>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 547
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 547
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 547
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T  ++V+P F G  +P  DP ++G I G+T   +   +     AT++ IAY TR ++E  
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAM 395
Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE 547
            A  G ++  L   GG   N   +Q  +DI+G  +  P   E
Sbjct: 396 QADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVRE 437

>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 508
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 337 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 393
Query: 509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 567
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 394 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 453
Query: 568 IEAMKAMNAAGQVIHP 583
            E +K+M   GQ+  P
Sbjct: 454 DE-LKSMAEEGQMFTP 468

>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 508
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 398
Query: 509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 567
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 399 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 458
Query: 568 IEAMKAMNAAGQVIHP 583
            E +K+M   GQ+  P
Sbjct: 459 DE-LKSMAEEGQMFTP 473

>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 508
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 354 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 410
Query: 509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 567
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 411 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 470
Query: 568 IEAMKAMNAAGQVIHP 583
            E +K+M   GQ+  P
Sbjct: 471 DE-LKSMAEEGQMFTP 485

>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 508
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 398
Query: 509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 567
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 399 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 458
Query: 568 IEAMKAMNAAGQVIHP 583
            E +K+M   GQ+  P
Sbjct: 459 DE-LKSMAEEGQMFTP 473

>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 508
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 397
Query: 509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 567
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 398 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 457
Query: 568 IEAMKAMNAAGQVIHP 583
            E +K+M   GQ+  P
Sbjct: 458 DE-LKSMAEEGQMFTP 472

>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 508
           +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++    
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKK 397
Query: 509 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXXXKRYSSL 567
             G  I  L   GG AKN L +Q  ADI+   +      E+               +  L
Sbjct: 398 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL 457
Query: 568 IEAMKAMNAAGQVIHP 583
            E +K+M   GQ+  P
Sbjct: 458 DE-LKSMAEEGQMFTP 472

>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 56  VFLGVDVGTGSARAGLFDESGKLLG------SASSPIQIWKEGDCIEQSSTDIWHAICAA 109
           +++G+D+GT   +  L +E G+++       + S P  +W E     Q     W A   A
Sbjct: 1   MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSE-----QDPEQWWQATDRA 55
Query: 110 VDSACSLANVDGEEVKGVGFAAT---CSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQ 166
           + +     ++  ++VK +G A      +L+DA    +         R  I+W D R  ++
Sbjct: 56  MKALGDQHSL--QDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQE 104
Query: 167 AEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD 225
              + +R        G  + P    PKLLWV+ +  E +  + + +   D+L  R TG+
Sbjct: 105 CTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGE 163

>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed With Xylulose Length = 484

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 448 EDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 507
           E +  LP   G R+P  +P++KG+  G+T      +LA    A ++G+ Y     ++  +
Sbjct: 325 EPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVH 381
Query: 508 AHGHKIDTLLACGGLAKNPLFLQQHADIIG 537
           A G K  ++   GG A++  + Q  ADI G
Sbjct: 382 ACGIKPQSVTLIGGGARSEYWRQMLADISG 411

>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           TE ++V+P F G  +P  D +++G I G+T  + ++       AT++ + Y TR + E  
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFI---RATLESLCYQTRDVXEAX 397
Query: 507 NAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENES 548
           +   G  + +L   GG  KN    Q  ADI+   +  P   E+
Sbjct: 398 SKDSGIDVQSLRVDGGAVKNNFIXQFQADIVNTSVERPEIQET 440

>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            L +D GT S RA +FD + K+ G       Q + +   +E    +IW  + + V  A  
Sbjct: 28  ILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIE 87
Query: 116 LANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRR---NIIVWMDHRAVKQAEKINS 172
            + +   ++  +G       V        V W+ ++ +   N IVW D R     +K+  
Sbjct: 88  KSGITANDIAAIGITNQRETV--------VVWDRETGKPIHNAIVWQDRRTAAFCDKLKK 139
Query: 173 R--NSPVLQYCGGAVSPEMQPPKLLWVKENLQ 202
           +      ++  G  + P     KL W+  N++
Sbjct: 140 KGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVK 171

>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 504
           +++++++P F G  +P  DP ++G I G T ++   + A    A ++ + Y TR ++E  
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGXTRNTGPAEFA---RAALEAVCYQTRDLLEAX 416
Query: 505 HCNAHGHKIDTLLAC-GGLAKNPLFLQQHADIIGCPIILP 543
           H +   +  DT+L   GG   +    Q+ +D++  P+  P
Sbjct: 417 HKDWRRNGNDTVLRVDGGXVASDWTXQRLSDLLDAPVDRP 456

>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus Acidophilus Length = 504

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 14/176 (7%)
Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASS--PIQIWKEGDCIEQSSTDIWHAICAAV 110
           S    +G DVGT + +  L+D +GK + S S   P+   K G   E+    I+ A+   +
Sbjct: 2   SLKYIIGXDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQA-EEDPKLIFDAVQEII 60
Query: 111 DSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDH--RAVKQAE 168
                   +DG+        A  S      S + +  + +   N I W D+  +++ Q  
Sbjct: 61  FDLTQ--KIDGK-------IAAISWSSQXHSLIGLGSDDELLTNSITWADNCAKSIVQDA 111
Query: 169 KINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG 224
           K       + +  G    P     KLLW+K    E +S   +W+ + +++ +R TG
Sbjct: 112 KNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFRLTG 167

>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium Violaceum Length = 511

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 107/280 (38%), Gaps = 46/280 (16%)
Query: 61  DVGTGSARAGLFDESGKLLGSASSPIQIWKEGDC-IEQSSTDIWHAICAAVDSACSLANV 119
           D+GT   +A L D  G L    S  ++ + +G+  +EQ + D W+     + S+   + V
Sbjct: 11  DIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGD-WYDAVQRIASSWWQSGV 69
Query: 120 DGEEVKGV---GFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSP 176
           D   V  +   G       +D D  P+            +++ D R +K+AE+IN+R+  
Sbjct: 70  DARRVSAIVLSGQXQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINARHGA 120
Query: 177 -----VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 231
                 L+    A S  + P  + W     Q    +    +   D++  R TG       
Sbjct: 121 DNLWSALENPXTAAS--ILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHATDRT 178
Query: 232 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 291
                  Y                       D+ W    L D   G    +   +  PG 
Sbjct: 179 NASTTGLYRPK--------------------DDAWHVELLADY--GFSLDLXPRLLEPGE 216
Query: 292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVME 329
            +G G++  AA++ G V GTPV   L DA A   GVGV++
Sbjct: 217 QVG-GVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLD 255

>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From Rhodospirillum Rubrum Length = 508

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 381 MVPKFWLTEGGQSATGALLDYIIENHVXXXXXXXXXXXXHVSLFELLNGTLESMIHERNS 440
           +VP  +   G  +ATG+ L+++ +                    E  +  L+++  E   
Sbjct: 290 LVPGLYAPNGCXAATGSALNWLAKLLAPEAG-------------EAAHAQLDALAAE--- 333
Query: 441 PFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTR 500
             V A  + +  LP F G ++PI DP + G   G++L  +      L+ A ++ +A   R
Sbjct: 334 --VPAGADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGH---LWRALLEAVALAFR 388
Query: 501 HIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESXXXXXXXXXXXX 560
           H V   +  GH      A  G  ++ ++    AD++  P+ L   N              
Sbjct: 389 HHVAVLDDIGHAPQRFFASDGGTRSRVWXGIXADVLQRPVQL-LANPLGSAVGAAWVAAI 447
Query: 561 XKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELF 604
                   + + A+   G+ I P  DP   + +D  Y  F  L+
Sbjct: 448 GGGDDLGWDDVTALVRTGEKITP--DPAKAEVYDRLYRDFSALY 489

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	619
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	0.0
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	0.0
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	1e-89
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	2e-79
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	4e-78
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	1e-69
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	9e-67
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	3e-47
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	7e-43
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	3e-13
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	2e-05
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	3e-13
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	2e-05
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	4e-13
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	2e-05
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	5e-13
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	3e-06
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	1e-12
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	3e-05
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	2e-12
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	1e-05
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	2e-12
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	1e-05
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	4e-12
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	2e-05
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1z05_A	429	Transcriptional regulator, ROK family; structural	1e-05
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	4e-05
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	4e-05
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	1e-04
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	2e-04
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	4e-04
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	6e-04
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	7e-04
3mcp_A	366	Glucokinase; structural genomics, joint center for	8e-04

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554

 Score =  652 bits (1683), Expect = 0.0
 Identities = 270/566 (47%), Positives = 393/566 (69%), Gaps = 27/566 (4%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSA 113
           S F+GVDVGTGSARAG+FD  G+++G AS  I ++K + D +EQSS +IW A+C AV  A
Sbjct: 5   SYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDA 64

Query: 114 CSLANVDGEEVKGVGFAATCSLV--DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKIN 171
            + A+++  +VKG+GF ATCSLV  D +G+P++VS +G + +N+IVWMDHRA+ QAE+IN
Sbjct: 65  VNQADINPIQVKGLGFDATCSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERIN 124

Query: 172 SRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLC 231
           +   PVL++ GG +SPEMQ PKLLW+K+++  +WS V    DL D+L++RAT D+TRSLC
Sbjct: 125 ATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGHLFDLPDFLTWRATKDETRSLC 184

Query: 232 TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 291
           +TVCKWTYLGH                  WD  +++ +GL DL+D + AKIG +V   G 
Sbjct: 185 STVCKWTYLGHED---------------RWDPSYFKLVGLADLLDNNAAKIGATVKPMGA 229

Query: 292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMV 351
           PLG GL+  AA E+GL+PGT V  S+IDAHAG +G++ +   +   A          R+ 
Sbjct: 230 PLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANF------DRRIA 283

Query: 352 LVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRS 411
           L+ GTST HMA+SR+  FI G+WGP++SA++P++WL EGGQSATGAL+D+II++H    +
Sbjct: 284 LIGGTSTAHMAMSRSAHFISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPA 343

Query: 412 LANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI 471
           L  +A ++  +++E LN  L  M  E  +  +A LT DIH+LP FHGNRSP A+P   GI
Sbjct: 344 LLEQAKNKGETIYEALNYILRQMAGEPEN--IAFLTNDIHMLPYFHGNRSPRANPNLTGI 401

Query: 472 ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ 531
           I G+ L ++ + +AL YLAT+Q +A GTRHI+E  N +G+ IDT++A GG  KNP+F+Q+
Sbjct: 402 ITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQE 461

Query: 532 HADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKK 591
           HA+  GC ++LP E+E++LLG+A++G VAA  + SL EAM AM+  G+ + P  + K+K 
Sbjct: 462 HANATGCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQTN-KIKA 520

Query: 592 YHDAKYLIFRELFEQQVSQRSIMAQA 617
           Y+D KY +F +++   +  +++M + 
Sbjct: 521 YYDRKYRVFHQMYHDHMRYQALMQEG 546

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508

 Score =  286 bits (733), Expect = 1e-89
 Identities = 102/561 (18%), Positives = 188/561 (33%), Gaps = 89/561 (15%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
            +G+D+GT S  A L      ++  AS P  +        E+     W    A +    +
Sbjct: 9   VIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKT 68

Query: 116 LANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 172
            A        G+          L+D  G+ +         R  I   D R   +  ++ +
Sbjct: 69  TAGESDWRPGGICVTGMLPAVVLLDDRGAVL---------RPSIQQSDGRCGDEVAELRA 119

Query: 173 RNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD---DT 227
                  L   G  V+ ++   KL W++ +    +  +       D+++   TG+   D 
Sbjct: 120 EVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIATVCGSYDYINMLLTGERVVDR 179

Query: 228 RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 287
                                   GF D+ +   + +      +        + +  +  
Sbjct: 180 NWALEG------------------GFIDLASGTVEADLVALAHIPP------SAVPPAHP 215

Query: 288 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEEEA 345
                LG  +T  AA   GL  G PV     D  A     G+                  
Sbjct: 216 -THRVLG-AVTAEAAALTGLPTGLPVYGGAADHIASALAAGITRP--------------- 258

Query: 346 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 405
               ++L  G +   +  S      P ++      +VP  +   G  +ATG+ L+++ + 
Sbjct: 259 --GDVLLKFGGAGDIIVASATAKSDPRLY--LDYHLVPGLYAPNGCMAATGSALNWLAKL 314

Query: 406 HVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 465
                     A     +    L+              V A  + +  LP F G ++PI D
Sbjct: 315 L---------APEAGEAAHAQLDALAAE---------VPAGADGLVCLPYFLGEKTPIHD 356

Query: 466 PKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 525
           P + G   G++L  +      L+ A ++ +A   RH V   +  GH      A  G  ++
Sbjct: 357 PFASGTFTGLSLSHTR---GHLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRS 413

Query: 526 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSK 585
            +++   AD++  P+ L        +GAA + A+         + + A+   G+ I P  
Sbjct: 414 RVWMGIMADVLQRPVQLLANPLGSAVGAAWVAAIGGGDDLGW-DDVTALVRTGEKITP-- 470

Query: 586 DPKVKKYHDAKYLIFRELFEQ 606
           DP   + +D  Y  F  L+  
Sbjct: 471 DPAKAEVYDRLYRDFSALYAT 491

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511

 Score =  259 bits (664), Expect = 2e-79
 Identities = 106/573 (18%), Positives = 205/573 (35%), Gaps = 104/573 (18%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACS 115
               D+GT   +A L D  G L    S  ++ +      +EQ + D + A+      +  
Sbjct: 7   IATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIAS-SWW 65

Query: 116 LANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 172
            + VD   V  +  +        +D D  P+            +++ D R +K+AE+IN+
Sbjct: 66  QSGVDARRVSAIVLSGQMQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINA 116

Query: 173 RNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM-DLSDWLSYRATGD---D 226
           R+    +       ++     PKL++ + +  +++  +   +    D++  R TG    D
Sbjct: 117 RHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHATD 176

Query: 227 TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG-----LGDLIDGHHAK 281
             +  TT                  G    +   W  E   + G     +  L++     
Sbjct: 177 RTNASTT------------------GLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQ- 217

Query: 282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAK 339
           +G            G++  AA++ G V GTPV   L DA A   GVGV++          
Sbjct: 218 VG------------GVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDD--------- 256

Query: 340 ENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWS--AMVPKFWLTEGGQSATGA 397
                       L  GT+     +++         G  +    ++    L        G 
Sbjct: 257 --------EDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGN 308

Query: 398 LLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFH 457
           +L + +        + +R        F +    ++             + + +  +P  H
Sbjct: 309 ILQWALTL------VGHRPGEDCAEYFHMAAAEVQ----------GVTVPDGLLFVPYLH 352

Query: 458 GNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLL 517
             R P+  P  +G + G+T  ++    A + LA ++G A   R   E       K+  L 
Sbjct: 353 AERCPVELPAPRGALLGVTGATT---RAQILLAVLEGAALSLRWCAEL--LGMEKVGLLK 407

Query: 518 ACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILGAVAAKRYSSLIEAMKA--- 573
             GG A++  +L+  AD +   +++  +     L G A L AV  +   S+ + ++    
Sbjct: 408 VVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADL 467

Query: 574 MNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 606
              A  ++HP   P  +     K+  F++  E 
Sbjct: 468 REPASNILHP--QPCDEGRRRRKFERFKQCVET 498

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484

 Score =  255 bits (653), Expect = 4e-78
 Identities = 120/569 (21%), Positives = 207/569 (36%), Gaps = 96/569 (16%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIEQSSTDIWHAICAAVDSACS 115
           ++G+D+GT   +  L +E G+++ + +  + + +      EQ     W A   A+ +   
Sbjct: 2   YIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL-- 59

Query: 116 LANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINS 172
                 ++VK +G A      +L+DA    +         R  I+W D R  ++   + +
Sbjct: 60  GDQHSLQDVKALGIAGQMHGATLLDAQQRVL---------RPAILWNDGRCAQECTLLEA 110

Query: 173 RNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGD---DTRS 229
           R        G  + P    PKLLWV+ +  E +  + + +   D+L  R TG+   D   
Sbjct: 111 RVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFASDMSD 170

Query: 230 LCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 289
              T                   + D+    W D   +   L         ++       
Sbjct: 171 AAGT------------------MWLDVAKRDWSDVMLQACDL------SRDQMPALYE-G 205

Query: 290 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--GVGVMESVPESVSEAKENEEEAIC 347
               G  L P  AK  G+    PV     D  AG  GVG++++                 
Sbjct: 206 SEITG-ALLPEVAKAWGM-ATVPVVAGGGDNAAGAVGVGMVDA----------------- 246

Query: 348 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHV 407
           ++ +L  GTS  + AVS   L  P      +   +P+ W       +  + LD+      
Sbjct: 247 NQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWA----- 301

Query: 408 ASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPK 467
               L   +          L    +               E +  LP   G R+P  +P+
Sbjct: 302 --AKLTGLSN------VPALIAAAQQ---------ADESAEPVWFLPYLSGERTPHNNPQ 344

Query: 468 SKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPL 527
           +KG+  G+T          L  A ++G+ Y     ++  +A G K  ++   GG A++  
Sbjct: 345 AKGVFFGLTHQHG---PNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEY 401

Query: 528 FLQQHADIIGCPIILPRENE-SVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKD 586
           + Q  ADI G  +      +    LGAA L  +AA    SLIE +  +    Q   P  D
Sbjct: 402 WRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQLPLE-QSHLP--D 458

Query: 587 PKVKKYHDAKYLIFRELFEQQVSQRSIMA 615
            +    +  +   FR L++Q      +MA
Sbjct: 459 AQRYAAYQPRRETFRRLYQQ---LLPLMA 484

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504

 Score =  233 bits (596), Expect = 1e-69
 Identities = 103/576 (17%), Positives = 192/576 (33%), Gaps = 115/576 (19%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVD 111
           S    +G+DVGT + +  L+D +GK + S S     I  +    E+    I+ A+   + 
Sbjct: 2   SLKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIF 61

Query: 112 SACSLANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAE 168
                      ++  + +++   +   + +D   +          N I W D+ A    +
Sbjct: 62  DLTQKI---DGKIAAISWSSQMHSLIGLGSDDELL---------TNSITWADNCAKSIVQ 109

Query: 169 KINSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG-- 224
              +R     + +  G  + P     KLLW+K    E +S   +W+ + +++ +R TG  
Sbjct: 110 DAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQKWIGIKEYIIFRLTGKL 169

Query: 225 --DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG-----LGDLIDG 277
             D T +  T                   G  +++   WD E  + +      L  +   
Sbjct: 170 VTDTTMAAGT-------------------GILNLKTLTWDQELLDILKIKKEQLPKIAQP 210

Query: 278 HHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPV--GTSLIDAHAGGVGVMESVPESV 335
               I              +     K+LG+   T +  G S  D +   +GV        
Sbjct: 211 TKV-IF------------PIKTEYVKKLGIDSDTKIILGAS--DGYLSTIGVN------- 248

Query: 336 SEAKENEEEAICHRMVLVC-GTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSA 394
                    AI      +  GTS     +       P     F        +L  G  + 
Sbjct: 249 ---------AIDSDHCALNVGTSGAIRTIVDQPKIDPSA-SYFCYPADKTHYLLGGPVNN 298

Query: 395 TGALL----DYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI 450
            G +       + +     +   + A +                          A + ++
Sbjct: 299 GGIVFNWARQTLFDADETPQDFLDVAQT------------------------APAGSRNL 334

Query: 451 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG 510
             LP   G R+PI D  ++G   G+T    + ++A    A ++GI +       +   + 
Sbjct: 335 IFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMAR---AVIEGIIFNLYDAASNLIKNT 391

Query: 511 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEA 570
            K   + A GG  K+    Q  A+I   PI+  +E +S  L A  L   A      L   
Sbjct: 392 KKPVAINATGGFLKSDFVRQLCANIFNVPIVTMKEQQSGTLAAMFLARQALGLNQDL-SE 450

Query: 571 MKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 606
           +     A +V  P  +PK    +   + ++ E+   
Sbjct: 451 IGQFAQADKVYFP--NPKEAATYQKLFPLYCEIRNA 484

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515

 Score =  226 bits (577), Expect = 9e-67
 Identities = 92/584 (15%), Positives = 167/584 (28%), Gaps = 103/584 (17%)

Query: 54  RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
           R++  GVD  T S +  + D E+G+L+    +               +  W A   A + 
Sbjct: 4   RTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGTS-----VDPSYWWSAFQEAAEQ 58

Query: 113 ACSLANVDGEEVKGVGFAA---TCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 169
           A        ++V  +          ++D  G+ +         R+ ++W D  +  QA  
Sbjct: 59  A-----GGLDDVSALAVGGQQHGMVILDNQGNVI---------RDAMLWNDTSSAPQAAA 104

Query: 170 INSR------------------NSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 211
           +  +                      ++  G +        K+ WV EN  E+   +   
Sbjct: 105 LIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIAAI 164

Query: 212 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL 271
               DWLS+R  G    +                   +   + D  +  +  +    +  
Sbjct: 165 CLPHDWLSWRIAGYGPVAEGEDAHLEAL--FTDRSDASGTIYYDAASNEYRRDLIAMVLE 222

Query: 272 GDLIDGHHAKIGRSVAFP-----GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAG--G 324
                        ++  P                A     +  G  +     D      G
Sbjct: 223 AAEGAKAAQSHAEAIVLPTVLGPRDAAP-VKADPAIAGKNVEGGCLLAPGGGDNAMASLG 281

Query: 325 VGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP-GVWGPFWSAMVP 383
           +G+                      + +  GTS    A+S N  +   G    F  A   
Sbjct: 282 LGMAVGD------------------VSISLGTSGVAAAISENPTYDLTGAVSGF--ADCT 321

Query: 384 KFWLTEGG-QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPF 442
             +L      + +  L                 A          L    + +     +  
Sbjct: 322 GHYLPLACTINGSRIL----------------DAGRA------ALGVDYDELAKLAFASK 359

Query: 443 VAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHI 502
             A    I ++P F G R+P   P +     GMTL ++ +    L  A V+G+    R  
Sbjct: 360 PGA--NGITLVPYFDGERTP-NRPNATATFSGMTLANTTR--ENLARAFVEGLLCSQRDC 414

Query: 503 VEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAK 562
           +E   + G  I  +L  GG AK+         I+G  +  P  +E V +GAA   A    
Sbjct: 415 LELIRSLGASITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDEYVAIGAARQAAWVLS 474

Query: 563 RYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 606
             +    A +      +   P     V + +             
Sbjct: 475 GETEP-PAWQLTIDGVETGEP--TEAVYEAYAKARGEGHHHHHH 515

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489

 Score =  172 bits (438), Expect = 3e-47
 Identities = 76/582 (13%), Positives = 150/582 (25%), Gaps = 126/582 (21%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIW--HAICAAV 110
           +    + VD+G  S R  L     +        I  +  G    Q+    W   ++ +A+
Sbjct: 2   TFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNG-LHSQNGYVTWDVDSLESAI 60

Query: 111 DSACSLANVDGEEVKGVGF---AATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA 167
               +     G  +  +G         L+D  G  V            + + D R     
Sbjct: 61  RLGLNKVCAAGIAIDSIGIDTWGVDFVLLDQQGQRV---------GLPVAYRDSRTNGLM 111

Query: 168 EKINSRNSP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATG- 224
            +   +     + Q  G    P     +L  + E   E    +   + + D+ SYR TG 
Sbjct: 112 AQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGK 171

Query: 225 ------DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIG-----LGD 273
                 + T +                         ++ +  WD+      G      G 
Sbjct: 172 MNWEYTNATTTQLV----------------------NINSDDWDESLLAWSGANKAWFGR 209

Query: 274 LIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPE 333
                          PG+ +G         E+ +V      +   D  +  +    +   
Sbjct: 210 PTH------------PGNVIGH-WICPQGNEIPVVAV---ASH--DTASAVIASPLNGSR 251

Query: 334 SVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPG--VWGPFWSAMVPKFWLTEGG 391
           +                 L  GT +     S+                      +     
Sbjct: 252 AAY---------------LSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKN 296

Query: 392 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 451
                 L   + E  +                       L ++I                
Sbjct: 297 IMGLWLLQRVLQERQIND---------------------LPALIAA------TQALPACR 329

Query: 452 VLPD-----FHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEH- 505
            + +     F       ++ ++        +  S+ +LA         +A     ++   
Sbjct: 330 FIINPNDDRFINPDEMCSEIQAACREMAQPIPESDAELAR---CIFDSLALLYADVLHEL 386

Query: 506 CNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
               G     L   GG  +N L  Q  AD  G  +I     E+  LG   +  +     +
Sbjct: 387 AQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAG-PVEASTLGNIGIQLMTLDELN 445

Query: 566 SLIEAMKAM--NAAGQVIHPSKDPKVKKYHDAKYLIFRELFE 605
           ++ +  + +   A      P+ D ++  Y  A     R+  E
Sbjct: 446 NVDDFRQVVSTTANLTTFTPNPDSEIAHY-VALIHSTRQTKE 486

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482

 Score =  159 bits (405), Expect = 7e-43
 Identities = 75/534 (14%), Positives = 139/534 (26%), Gaps = 93/534 (17%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
           S    + +D+G   ++  L+D  G++L     P    +        + D    +      
Sbjct: 4   STGATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDV--- 60

Query: 113 ACSLANVDGEEVKGVGF---AATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 169
              L+      V  +      A  + +  DG               + +           
Sbjct: 61  ---LSRYADHPVTTIVPVGHGAGIAALT-DGRLA---------FPPLDYEQSIPEAVMAD 107

Query: 170 INSRNSPVLQYCGGAVSPEM--QPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDT 227
             S+        G    P+      +L W+ +   +  +     +  + + ++  TG   
Sbjct: 108 YRSQR-DPFARTGSPALPDGLNIGSQLWWLDQLHPDVMANA-TLLPWAQYWAWFLTG--- 162

Query: 228 RSLCTTVCKWTYLG-HAHMQQMNEKGFRD-MEACGWDDEFWEEIGLGDLIDGHHAKIGRS 285
                 V + T LG H+ +    +  F    +  GW   F                    
Sbjct: 163 ----RAVSEVTSLGCHSDLWDPQDGDFSPMAKRLGWAARFAP------------------ 200

Query: 286 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEA 345
           +   G  +G+ L PA A+  GL P   V   L D++A  +            A       
Sbjct: 201 IVRAGDTVGA-LLPAIAERTGLSPDVQVLAGLHDSNAALLA----ARGFAEIADNE---- 251

Query: 346 ICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIEN 405
                  V  T T  +A+      +     P     +       G      +        
Sbjct: 252 -----ATVLSTGTWFIAMRLPATPVDTATLPEARDCLV-NVDVHGR--PVPSARFMGGRE 303

Query: 406 HVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIAD 465
                 +  R          LL                  L     +LP       P   
Sbjct: 304 IETLIEIDTRRVDIKPDQPALLAAV------------PEVLRHGRMILPTLMRGFGPY-- 349

Query: 466 PKSKGIICGMTLDSSEKQ-LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK 524
           P  +        D  E++  A LY A           + +           +L  G  A+
Sbjct: 350 PHGRFAWINRPEDWFERRAAACLYAA----------LVADTALDLIGSTGRILVEGRFAE 399

Query: 525 NPLFLQQHADII-GCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAA 577
             +F++  A +   C +     +  V  GA  L     +    L+        +
Sbjct: 400 ADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPGLRPQGELVRIEPLDTGS 453

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           TE ++V+P F G  +P  D +++G I G+T  + ++       AT++ + Y TR ++E  
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIR---ATLESLCYQTRDVMEAM 397

Query: 507 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
           +   G  + +L   GG  KN   +Q  ADI+   +  P   E+  LGAA L  +A   + 
Sbjct: 398 SKDSGIDVQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWE 457

Query: 566 SLIEAMKAMNAAGQVIHPSKDPK 588
           S  + +       +   P  D  
Sbjct: 458 SK-DDIAKNWKLEEKFDPKMDEG 479

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 14/118 (11%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA LF++ G++ G A     Q + +   +E  + +IW ++ A +    + 
Sbjct: 9   LSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINE 68

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 170
            +V  +++ G+G      T  + D   G P+          + IVW   +      ++
Sbjct: 69  NDVRADQIAGIGITNQRETTVVWDKHTGRPI---------YHAIVWQSRQTQSICSEL 117

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score = 71.0 bits (175), Expect = 3e-13
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
             +++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++  
Sbjct: 340 DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAVAYQSKDVIDTM 396

Query: 507 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
               G  I  L   GG AKN L +Q  ADI+   +      E+  LGAA L  +A   + 
Sbjct: 397 KKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWK 456

Query: 566 SLIEAMKAMNAAGQVIHPSKDPK 588
            L + +K+M   GQ+  P    +
Sbjct: 457 DL-DELKSMAEEGQMFTPEMPAE 478

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           + +D GT S+RA +FD +GK +GS+     Q + +   +E ++ +IW+++ + +  A   
Sbjct: 8   MAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 67

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 170
           + +  E + G+G      T  + D   G P++         N IVW   ++   A+++
Sbjct: 68  SGIRPEAIAGIGITNQRETTVVWDKTTGQPIA---------NAIVWQSRQSSPIADQL 116

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score = 70.6 bits (174), Expect = 5e-13
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
            E ++ +P F G  +P  D  ++GII G+T  +  + LA    AT++ IAY TR +V+  
Sbjct: 332 NEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLAR---ATLEAIAYLTRDVVDEM 388

Query: 507 NAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSS 566
                +I  L   GG   N   +Q  ADI+   +I P   E+  LGAA L  +A   ++ 
Sbjct: 389 EK-LVQIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWAD 447

Query: 567 LIEAMKAMNAAGQVIHPSKDPK 588
               +  +  A ++  P  D K
Sbjct: 448 T-REIAELWKAERIFEPKMDEK 468

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT SARA +FD    + G       Q +     +E +  +IW A   A+  A   
Sbjct: 6   LSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQS 65

Query: 117 ANVDGEEVKGVGFA---ATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 170
           A ++  ++  +G      T  + D DG P+          N IVW   R  +  E+I
Sbjct: 66  ARIEPNQIAAIGVTNQRETTLVWDKDGKPL---------YNAIVWQCRRTAEMVEEI 113

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score = 69.9 bits (172), Expect = 1e-12
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           +++++++P F G  +P  DP ++G I GMT ++   + A    A ++ + Y TR ++E  
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFAR---AALEAVCYQTRDLLEAM 416

Query: 507 NA---HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 563
           +           L   GG+  +   +Q+ +D++  P+  P   E+  LG A L    A  
Sbjct: 417 HKDWRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGV 476

Query: 564 YSSLIEAMKAMNAAGQVIHPSKDPK 588
           + +  EA     A  +   P  D  
Sbjct: 477 WPNQ-EAFAKSWARDRRFEPHMDEA 500

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S RA +FD + K+ G       Q + +   +E    +IW  + + V  A   
Sbjct: 29  LAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEK 88

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 170
           + +   ++  +G      T  + D + G P+          N IVW D R     +K+
Sbjct: 89  SGITANDIAAIGITNQRETVVVWDRETGKPI---------HNAIVWQDRRTAAFCDKL 137

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
               + +P F G  +P   P ++G + G+T   +   +A    A ++  A+ +R +V+  
Sbjct: 340 NGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIAR---AALEATAFQSREVVDAM 396

Query: 507 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
           NA  G  +  L   GG+  N L +Q  AD +G  ++ P+  E+  LGAA    +A   + 
Sbjct: 397 NADSGVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWK 456

Query: 566 SLIEAMKAMNAAGQVIHPSKDPK 588
              + +    A  +   PS +  
Sbjct: 457 GE-QDVIDNWAEDKRWSPSMESG 478

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score = 47.1 bits (113), Expect = 1e-05
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 14/110 (12%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA +FD SG++  +      QI+     +E +   IW+ +   V  A + 
Sbjct: 5   LAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR 64

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHR 162
            N+  E++  VG      T  + D   G PV          N IVW D R
Sbjct: 65  GNLTHEDIAAVGITNQRETAVVWDKTTGKPVY---------NAIVWQDTR 105

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score = 68.7 bits (169), Expect = 2e-12
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-- 504
           T  +  +P F G  +P     ++  I GMT ++    +     A ++GIA+    IV+  
Sbjct: 343 TTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVR---ALLEGIAFQLNEIVDSL 399

Query: 505 HCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRY 564
             +     +  L   GG+ KN  F+Q ++DII   I + +  E   LGAA+L  +  K +
Sbjct: 400 TSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIW 459

Query: 565 SSLIEAMKAMNAAGQVIHPSKDPK 588
            SL      +  +  V H   D K
Sbjct: 460 DSLDSVKSLLRRSDAVFHSKMDDK 483

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 28/157 (17%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QI-----WKEGDCIEQSSTDIWHAICAAVD 111
           L +D  T S +   +DE   ++ S +    Q      W E D IE     I   +   ++
Sbjct: 7   LSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIE-----IMTNLYNLMN 61

Query: 112 SACSL--ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVK 165
               +         +K +G      T  + D   G P+          N IVW+D R  +
Sbjct: 62  EGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLY---------NAIVWLDTRVEE 112

Query: 166 QAEKINSR--NSPVLQYCGGAVSPEMQPPKLLWVKEN 200
              + +++  N+ + +  G   +      K+LW+ +N
Sbjct: 113 LVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQN 149

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score = 67.6 bits (166), Expect = 4e-12
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHC 506
           T D++ +P F G  +P  DP ++G + G+T  +S   LA    A ++G+A+  R +V   
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLAR---AALEGVAFQVRDVVLAM 391

Query: 507 NA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS 565
               G ++  L A GG+A+N LFL+  AD++G P+ +P   E+  LGAA++  V A   S
Sbjct: 392 EEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGALS 451

Query: 566 SLIEAMKAMNAAGQVIHPSKDP 587
              E +       +   P+   
Sbjct: 452 P--EDVAGRFREAERFLPTMPE 471

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           L +D GT S+RA LF   G+ +  A     Q++ +   +E    +IW     A       
Sbjct: 5   LALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRR 64

Query: 117 ANVDGEEVKGVGFA---ATCSLVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKI 170
           A  +  EV  +G      T  L D   G P+          N IVW D R     E +
Sbjct: 65  AGAEAGEVLALGITNQRETTLLWDRKTGKPLH---------NAIVWQDRRTTPLCEAL 113

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Length = 326

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
            +G+D+G  + +  +    G +    S    I ++G         I  +I  ++     L
Sbjct: 8   IIGIDLGGTTIKFAILTTDGVVQQKWSIETNILEDGK-------HIVPSIIESIRHRIDL 60

Query: 117 ANVDGEEVKGVGFAATCSLVDADGSPVSVSWN 148
            N+  E+  G+G       VD +   V  ++N
Sbjct: 61  YNMKKEDFVGIGMGTPG-SVDIEKGTVVGAYN 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 56/506 (11%), Positives = 135/506 (26%), Gaps = 146/506 (28%)

Query: 119 VDGEEVKGVG----FAATCSLVDADGSPVSVSWNGDSRRNIIVWM-------DHRAVKQA 167
           +DG  V G G        C                      I W+           ++  
Sbjct: 155 IDG--VLGSGKTWVALDVCL----SYKVQCKMDFK------IFWLNLKNCNSPETVLEML 202

Query: 168 EKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWS--------MVFRWMDLSDWLS 219
           +K+  +  P   +   +        ++  ++  L+            +V    ++ +  +
Sbjct: 203 QKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKA 258

Query: 220 YRATGDDTRSLCTTVCKW--TYLGHAHMQQ----MNEKGFRDMEACGWDDEF--WEEIGL 271
           + A     + L TT  K    +L  A         +       E          + +   
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRP 315

Query: 272 GDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLID--AHAGGVGVME 329
            DL                +P    +   + ++         G +  D   H     +  
Sbjct: 316 QDL---------PREVLTTNPRRLSIIAESIRD---------GLATWDNWKHVNCDKLTT 357

Query: 330 SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP-GVWGPFWSAMVPKFWLT 388
            +  S++  +  E                  ++V      IP  +    W  ++      
Sbjct: 358 IIESSLNVLEPAEYRK-MFDR----------LSVFPPSAHIPTILLSLIWFDVIKSD--- 403

Query: 389 EGGQSATGALLDYIIENHVASRSLANR-AASRHVSLFELLNGTLESMIHERNSPFV-AAL 446
                        ++ N +   SL  +      +S+  +    LE  +   N   +  ++
Sbjct: 404 -----------VMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSI 449

Query: 447 TEDIHVLPDFHGNRSPIADPKSKGIIC---G---MTLDSSEK--QLALLYL--------- 489
            +  ++   F  +   +  P          G     ++  E+     +++L         
Sbjct: 450 VDHYNIPKTFDSDD--LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 490 --------------ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHA-D 534
                          T+Q + +   +I ++   +   ++ +L          FL +   +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD---------FLPKIEEN 558

Query: 535 IIGCP------IILPRENESVLLGAA 554
           +I         I L  E+E++   A 
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 33/295 (11%), Positives = 88/295 (29%), Gaps = 69/295 (23%)

Query: 332 PESVSEAKENEEEAICHRMVLV-----CGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFW 386
            +   + ++   E    + VL+      G +   + V  +      +   F       FW
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--DF-----KIFW 186

Query: 387 LTEGGQSATGALLDYIIEN--HVASRSLANRA-ASRHVSL-FELLNGTLESMIHERNSPF 442
           L     ++   +L+ +++   +    +  +R+  S ++ L    +   L  ++  +  P+
Sbjct: 187 LNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PY 243

Query: 443 VAAL-----TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAY 497
              L      ++      F        +   K ++   T            +      A 
Sbjct: 244 ENCLLVLLNVQNAKAWNAF--------NLSCKILL--TTRFKQ--------VTDFLSAAT 285

Query: 498 GTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRENESVL-LGAAI 555
            T   ++H +      +            L        + C    LPRE  +      +I
Sbjct: 286 TTHISLDHHSMTLTPDEVK---------SLL----LKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 556 LGAVAAK--------RYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRE 602
           +              ++ +  +    + ++  V+ P+ + + K +      +F  
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYR-KMFDR--LSVFPP 383

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Length = 429

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            FL + +G G     L +  G++L      I    + D + +        +   ++    
Sbjct: 109 QFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLAR--------LLFEIEEFFQ 160

Query: 116 LANVDGEEVKGVGFAATCSLVDADGSPVSVSWN 148
                 + V  +       LV+++   V    +
Sbjct: 161 TYAAQLDRVTSIAITL-PGLVNSEQGIVLQMPH 192

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Length = 343

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 58  LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117
           L VD+G  + R  +    G+++   +             ++  +  + I      A + A
Sbjct: 33  LAVDLGGTNLRVAIVSMKGEIVKKYTQF---------NPKTYEERINLILQMCVEAAAEA 83

Query: 118 NVDGEEVKGVGFAA 131
                 + GVG + 
Sbjct: 84  VKLNCRILGVGIST 97

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Length = 406

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            +L + +  G     L D S KL+   S  + +  +   +++        I + +D    
Sbjct: 86  HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR--------IISHIDQFFI 137

Query: 116 LANVDGEEVKGVGFAATCSLVDADGSPVSVSWN 148
                 E +  +       ++D +   V     
Sbjct: 138 RHQKKLERLTSIAITL-PGIIDTENGIVHRMPF 169

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Length = 321

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           + LG+DVG  S + GL    G++  +       W  G            ++   + +   
Sbjct: 20  MILGIDVGGTSVKFGLVTPEGEIQNATRFMTADWVNGI-------GFVESMKLEIGNFLK 72

Query: 116 LANVDGEEVKGVGFAATCSLVDADGSPVSVSWN 148
                   VKGVG      LV  D + V +  N
Sbjct: 73  ----QYPIVKGVGIGWP-GLVSLDRTKVILLPN 100

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Length = 380

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 50  PARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAA 109
            + + +  LG++V      A L D S  +L   + P+         +    +  + +   
Sbjct: 82  ISPNCAYVLGIEVTRDEIAACLIDASMNILAHEAHPLP-------SQSDREETLNVMYRI 134

Query: 110 VDSACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWN 148
           +D A  +    G ++  +  AA    +D +   +    N
Sbjct: 135 IDRAKDMMEKLGSKLSALTVAAP-GPIDTERGIIIDPRN 172

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Length = 321

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 15/94 (15%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSAC 114
            + +GVD+G     AG+ DE G++L +         EG         I  AICAAV  A 
Sbjct: 2   GLTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTAEG---------IVDAICAAVAGA- 51

Query: 115 SLANVDGEEVKGVGFAATCSLVDADGSPVSVSWN 148
                +G +V+ VG  A    VD   + V  + N
Sbjct: 52  ----SEGHDVEAVGIGAAG-YVDDKRATVLFAPN 80

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Length = 310

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 16/116 (13%)

Query: 51  ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAV 110
            +  +V  GVD+G    R  L    G+ L                E  +  +   I   +
Sbjct: 3   QKQHNVVAGVDMGATHIRFCLRTAEGETLHCEKKRTA--------EVIAPGLVSGIGEMI 54

Query: 111 DSACSLANVDGEEVKGVGFAATCSLVDADG----SPVSVSWNGDSRRNIIVWMDHR 162
           D      N     +  +GF A    V  D     S  ++        ++   +++ 
Sbjct: 55  DEQLRRFNARCHGL-VMGFPAL---VSKDKRTIISTPNLPLTAADLYDLADKLENT 106

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Length = 305

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 8/92 (8%)

Query: 43  MAYATAPPARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDI 102
           MA  T  P  S    +GVD G    R  L    G  L  A            + Q     
Sbjct: 1   MARQTMNP--SIRYLIGVDGGGTGTRIRLHASDGTPLAMAEGG------ASALSQGIAKS 52

Query: 103 WHAICAAVDSACSLANVDGEEVKGVGFAATCS 134
           W A+ + +++A   A +              S
Sbjct: 53  WQAVLSTLEAAFQQAGLPAAPASACAIGLGLS 84

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Length = 366

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 9/93 (9%), Positives = 23/93 (24%), Gaps = 12/93 (12%)

Query: 56  VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACS 115
           + + +D G  +          ++      P             +  +   +   V+   +
Sbjct: 10  IVMTLDAGGTNFVFSAIQGGKEIADPVVLPAC-----------ADCLDKCLGNLVEGFKA 58

Query: 116 LANVDGEEVKGVGFAATCSLVDADGSPVSVSWN 148
           +     E    + FA      D     +    N
Sbjct: 59  IQAGLPEAPVAISFAFP-GPADYQAGIIGDLPN 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	619
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	100.0
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	100.0
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	100.0
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	100.0
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	100.0
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	100.0
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	100.0
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	100.0
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	100.0
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	100.0
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	100.0
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	100.0
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	100.0
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	100.0
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	100.0
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	100.0
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	100.0
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	100.0
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	100.0
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	99.61
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	98.64
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	98.54
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	98.5
1z05_A	429	Transcriptional regulator, ROK family; structural	98.48
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	98.45
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	98.44
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	98.43
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	98.4
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	98.39
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	98.36
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	98.33
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	98.29
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	98.19
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	98.07
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	98.06
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	98.03
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	98.01
2ap1_A	327	Putative regulator protein; zinc binding protein,	97.86
3mcp_A	366	Glucokinase; structural genomics, joint center for	97.86
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	97.7
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	97.65
3lm2_A	226	Putative kinase; structural genomics, joint center	97.57
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	97.39
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	97.36
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	97.27
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	97.25
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	97.17
2i7n_A	360	Pantothenate kinase 1; PANK, transferase; HET: ACO	97.14
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	97.02
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	96.99
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	96.99
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	96.96
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	96.94
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	96.92
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	96.92
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	96.81
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	96.66
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	96.53
3djc_A	266	Type III pantothenate kinase; structural genomics,	96.51
1cza_N	917	Hexokinase type I; structurally homologous domains	96.19
1cza_N	917	Hexokinase type I; structurally homologous domains	96.19
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	96.13
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	95.91
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	95.88
3o8m_A	485	Hexokinase; rnaseh-like fold, glycolysis, glucose	95.73
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	95.56
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	95.5
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	95.06
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	94.95
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	94.86
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	94.63
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	93.75
3qbx_A	371	Anhydro-N-acetylmuramic acid kinase; acetate and s	93.6
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	93.54
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	92.97
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	92.72
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	92.66
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	92.34
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	92.19
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	91.94
3cqy_A	370	Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1	91.84
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	91.77
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	91.32
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	91.24
3f9m_A	470	Glucokinase; hexokinase IV, ATP-binding, diabetes	90.36
3hm8_A	445	Hexokinase-3; glucose, glucose-6-phosphate, non-pr	89.53
3ven_A	576	O-carbamoyltransferase TOBZ; antibiotic biosynthes	88.77
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	87.87
1vhx_A	150	Putative holliday junction resolvase; structural g	86.29
2f9w_A	271	Pantothenate kinase; COAA, transferase; HET: PAU;	85.36
3t69_A	330	Putative 2-dehydro-3-deoxygalactonokinase; structu	85.33
3nuw_A	295	2-OXO-3-deoxygalactonate kinase; structural genomi	84.72
3r6m_A	213	YEAZ, resuscitation promoting factor; actin/HSP70	83.23
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	83.04
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	82.73
4ijn_A	398	Acetate kinase, acetokinase; proprionate kinase, A	82.59
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	81.95
3bzc_A	785	TEX; helix-turn-helix, helix-hairpin-helix, S1 dom	80.9
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	80.67

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=100.00  E-value=3e-94  Score=805.21  Aligned_cols=537  Identities=48%  Similarity=0.867  Sum_probs=460.0

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++|+||||+|||++|++|||.+|++++..+.+++.. +.+||+||||++||+++++++++++++.++...+|.+|||++|
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~   83 (554)
T 3l0q_A            4 ASYFIGVDVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQVKGLGFDAT   83 (554)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             CcEEEEEEECcccEEEEEECCCCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhHEEEEEEcCC
Confidence            469999999999999999999999999999999765 4899999999999999999999999887777789999999998


Q ss_pred             ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhccce
Q 007076          133 CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR  210 (619)
Q Consensus       133 ~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~  210 (619)
                      +++  ||++|+|++....+++.+|+|+|+|.|+.++++++++..++++++||+++++.|+++||+|+++|+||+|+++.+
T Consensus        84 ~~~v~~D~~G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~Pe~~~~~~~  163 (554)
T 3l0q_A           84 CSLVVLDKEGNPLTVSPSGRNEQNVIVWMDHRAITQAERINATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGH  163 (554)
T ss_dssp             SCEEEEETTSCBCCCSTTCCTTCCEECTTCCTTHHHHHHHHHHTCGGGGGBTTCCCTTSHHHHHHHHHHHCHHHHHHEEE
T ss_pred             CceEEECCCCCEeeccCCCCCCCCcEEecccchHHHHHHHHHhHHHHHHHhCCCCChhhHHHHHHHHHHhChHHHHHhce
Confidence            764  499999994222344456999999999999999998776788999999999999999999999999999999999


Q ss_pred             eeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCC
Q 007076          211 WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPG  290 (619)
Q Consensus       211 ~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g  290 (619)
                      |++++|||.|+|||+...+++|.++.               ..||+++++||+++|+.+||++.+...+.+|++++++++
T Consensus       164 ~~~~~dyl~~~LTG~~~~s~as~t~~---------------~~~d~~~~~W~~~ll~~~gi~~~~~~~~~~Lp~~i~~~~  228 (554)
T 3l0q_A          164 LFDLPDFLTWRATKDETRSLCSTVCK---------------WTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMG  228 (554)
T ss_dssp             EEEHHHHHHHHHHSCCCEEHHHHHHH---------------SCCBTTTTBCCHHHHHHHTCGGGGHHHHTTTCSCEECTT
T ss_pred             EEcHHHHHHHHHhCCccccccchhhc---------------cccccccCCCCHHHHHHcCCccccchhHHhCCCcccCCc
Confidence            99999999999999986555443221               136889999999999999998632100003333588999


Q ss_pred             CccC-CCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccC-CCcchhhhhhhhhcccCeEEEEecccceeeeeecccc
Q 007076          291 HPLG-SGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESV-PESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKL  368 (619)
Q Consensus       291 ~~~G-~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~-~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~  368 (619)
                      +++| + |++++|+++||++||||++|++|++|+++|+.|.. ++|.   .    ....+++.+++|||+++..++++|.
T Consensus       229 ~~~G~~-lt~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~~~G~---~----~~~~~~~~~~~GTs~~~~~~~~~~~  300 (554)
T 3l0q_A          229 APLGHG-LSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGE---N----ANFDRRIALIGGTSTAHMAMSRSAH  300 (554)
T ss_dssp             CBCTTS-SCHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCCTTSC---C----CCTTTEEEEECSSSEEEEEEESSCC
T ss_pred             CeeCcc-cCHHHHHHhCCCCCCeEEEeChHHHhHHhhccccccCCCc---c----ccccceEEEEecchheeeeecCCcc
Confidence            9999 8 99999999999999999999999999999853433 3320   0    0001278899999999999999888


Q ss_pred             ccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCC
Q 007076          369 FIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTE  448 (619)
Q Consensus       369 ~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~  448 (619)
                      .+++.|.+++++..++.|+++++++++|.+++||++.+....++.+.++..+.+.|+.|+++++++++.  .|..+.+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~  378 (554)
T 3l0q_A          301 FISGIWGPYYSAILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGE--PENIAFLTN  378 (554)
T ss_dssp             CCTTSEEEEETSSSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--GGGGGGGGT
T ss_pred             ccCCcceeecccccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCC--CCccccccC
Confidence            778777666666678999999999999999999999875433444445455778999999888776432  110012379


Q ss_pred             ceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHH
Q 007076          449 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF  528 (619)
Q Consensus       449 gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~  528 (619)
                      |++|+|||.|+|+|+|||++||+|+|++.+|++.|++|++||++|||||++|++++.|++.|.++++|+++||++||++|
T Consensus       379 gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~  458 (554)
T 3l0q_A          379 DIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIF  458 (554)
T ss_dssp             TCCEECCTTCBCSSSCBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHH
T ss_pred             ceEEcccccCCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHH
Confidence            99999999999999999999999999999999999988899999999999999999999988899999999999999999


Q ss_pred             HHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 007076          529 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV  608 (619)
Q Consensus       529 ~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~  608 (619)
                      +||+||+||+||+++...|++|+|||++|++++|.|+|++++.+++++..++|+|+ |+++++.|+++|++|+++|++++
T Consensus       459 ~Qi~ADv~g~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~a~~~~~~~~~~~~P~-~~~~~~~Y~~~y~~y~~l~~~~~  537 (554)
T 3l0q_A          459 VQEHANATGCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQ-TNKIKAYYDRKYRVFHQMYHDHM  537 (554)
T ss_dssp             HHHHHHHHCCEEEEESCSCHHHHHHHHHHHHHTTSSSSHHHHHHHHCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCeEEecCCCcchHHHHHHHHHHHcCCcCCHHHHHHHhcCCCcEEeCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988898888999993 47899999999999999999999


Q ss_pred             HHHHHHHH
Q 007076          609 SQRSIMAQ  616 (619)
Q Consensus       609 ~~~~~~~~  616 (619)
                      ++|++|+.
T Consensus       538 ~~~~~~~~  545 (554)
T 3l0q_A          538 RYQALMQE  545 (554)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhc
Confidence            99999964

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=100.00  E-value=1.4e-91  Score=774.50  Aligned_cols=485  Identities=20%  Similarity=0.314  Sum_probs=427.6

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      |+|+|+||||+|||++|++|+|.+|++++..+.+++.. +.+||+||||++||+++++++++++++.+   .+|.+|||+
T Consensus         1 M~m~~~lgIDiGtts~K~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~---~~I~~Igis   77 (504)
T 3ll3_A            1 MSLKYIIGMDVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID---GKIAAISWS   77 (504)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCS---SEEEEEEEE
T ss_pred             CCCCEEEEEEecCCceEEEEEcCCCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCC---CCeEEEEEE
Confidence            66789999999999999999999999999999999865 48999999999999999999999988753   689999999


Q ss_pred             Cc-ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhH
Q 007076          131 AT-CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESW  205 (619)
Q Consensus       131 ~~-~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~  205 (619)
                      +| +++  ||++|+|+         +|+|+|+|.|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|
T Consensus        78 ~q~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~  148 (504)
T 3ll3_A           78 SQMHSLIGLGSDDELL---------TNSITWADNCAKSIVQDAKNRGFAQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVF  148 (504)
T ss_dssp             ECSSCBEEECTTSCBS---------SCEECTTCCTTHHHHHHHHHHTHHHHHHHHHCCCSCTTSHHHHHHHHHHHCHHHH
T ss_pred             CCCCcEEEECCCCCCc---------ccceeCCccCHHHHHHHHHhccCHHHHHHHHCCCCCcccHHHHHHHHHHcChHHH
Confidence            98 664  49999999         8999999999999999998864  6789999999999999999999999999999


Q ss_pred             hccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcc
Q 007076          206 SMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRS  285 (619)
Q Consensus       206 ~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~  285 (619)
                      +++.+|++++|||.|+|||+.. ++.|+              +++|++||+++++||+++|+.+||++.+   ||    +
T Consensus       149 ~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP----~  206 (504)
T 3ll3_A          149 SQAQKWIGIKEYIIFRLTGKLV-TDTTM--------------AAGTGILNLKTLTWDQELLDILKIKKEQ---LP----K  206 (504)
T ss_dssp             HHCCEEECHHHHHHHHHHSCCE-EEHHH--------------HTTTTCBCTTTSSBCHHHHHHHTCCGGG---SC----E
T ss_pred             HHHhheeCHHHHHHHHHhCCcc-cchhH--------------hhcccCeeCCCCCcCHHHHHHcCCCHHH---CC----C
Confidence            9999999999999999999874 34443              5678899999999999999999999753   46    6


Q ss_pred             cccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeec
Q 007076          286 VAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR  365 (619)
Q Consensus       286 v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~  365 (619)
                      ++++++++|. |++++|+++||++||||++|+||++|+++|+ |+.++              +++.+++|||+++.+.++
T Consensus       207 i~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~  270 (504)
T 3ll3_A          207 IAQPTKVIFP-IKTEYVKKLGIDSDTKIILGASDGYLSTIGV-NAIDS--------------DHCALNVGTSGAIRTIVD  270 (504)
T ss_dssp             EECTTCEECC-CCHHHHHHHTCCTTCEEEEEEEHHHHHHHTT-TCCST--------------TEEEEEESSSEEEEEEES
T ss_pred             eeCCcceeec-cCHHHHHhcCCCcCCCEEEEccHHHHHHHhC-CCCCC--------------CcEEEEechhhhheeeCC
Confidence            8899999997 9999999999999999999999999999998 55543              689999999999999999


Q ss_pred             cccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccC
Q 007076          366 NKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAA  445 (619)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~  445 (619)
                      +|..++.... +++...++.|+++++++++|.+++|+++.+....           ..++.+.+++++      +   |+
T Consensus       271 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~-----------~~~~~~~~~a~~------~---~~  329 (504)
T 3ll3_A          271 QPKIDPSASY-FCYPADKTHYLLGGPVNNGGIVFNWARQTLFDAD-----------ETPQDFLDVAQT------A---PA  329 (504)
T ss_dssp             SCCCCTTCCS-EEEEEETTEEEEEEEESCSHHHHHHHHHHHTCTT-----------CCHHHHHHHHHT------S---CT
T ss_pred             CcccCCCCce-EEEEeCCCeEEEEeehhhHHHHHHHHHHHhccch-----------hHHHHHHHHHhc------C---CC
Confidence            8876654321 3332336789999999999999999999875321           112222223333      2   36


Q ss_pred             CCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCC
Q 007076          446 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN  525 (619)
Q Consensus       446 g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s  525 (619)
                      +++|++|+|||.|+|+|+||+++||+|+|++..|++.|+.   ||++||+||++|++++.|++.+.++++|+++||++||
T Consensus       330 g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~---RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s  406 (504)
T 3ll3_A          330 GSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMA---RAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKS  406 (504)
T ss_dssp             TGGGCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCS
T ss_pred             CCCCeEEecCccCCCCCCCCCccCeEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcC
Confidence            8999999999999999999999999999999999999865   5999999999999999999888889999999999999


Q ss_pred             HHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHH
Q 007076          526 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFE  605 (619)
Q Consensus       526 ~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~  605 (619)
                      ++|+||+||++|+||+++...|++|+|||++|++++|.|+++++ ++++.+..++|+|  +++.++.|+++|++|+++|+
T Consensus       407 ~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~-~~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~l~~  483 (504)
T 3ll3_A          407 DFVRQLCANIFNVPIVTMKEQQSGTLAAMFLARQALGLNQDLSE-IGQFAQADKVYFP--NPKEAATYQKLFPLYCEIRN  483 (504)
T ss_dssp             HHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSCCSGGG-GGGTSCEEEEECC--CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCeEEecCCCCchhHHHHHHHHHHcCccCCHHH-HHHhcCCCeEEcc--CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987 5667777889999  99999999999999999999


Q ss_pred             HHHHHHHH
Q 007076          606 QQVSQRSI  613 (619)
Q Consensus       606 ~~~~~~~~  613 (619)
                      +++++.+-
T Consensus       484 ~l~~~~~~  491 (504)
T 3ll3_A          484 ALAASYGK  491 (504)
T ss_dssp             HHGGGSGG
T ss_pred             HHHHHHHH
Confidence            99875433

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=100.00  E-value=6.5e-91  Score=770.02  Aligned_cols=484  Identities=20%  Similarity=0.271  Sum_probs=429.3

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++|+||||+|||++|++|||++|+++++.+++++.. +.+||.||||++||+++++++++++++.+++..+|.+|||++|
T Consensus         6 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~~   85 (508)
T 3ifr_A            6 GRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTGM   85 (508)
T ss_dssp             -CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEEEC
T ss_pred             CCEEEEEEecCcceEEEEECCCCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEEEEEECC
Confidence            479999999999999999999999999999999865 4899999999999999999999999887766789999999998


Q ss_pred             -ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 -CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 -~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                       +++  ||++|+|+         +|+|+|+|.|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|++
T Consensus        86 ~~~~v~~D~~G~~l---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  156 (508)
T 3ifr_A           86 LPAVVLLDDRGAVL---------RPSIQQSDGRCGDEVAELRAEVDSEAFLARTGNGVTQQLVTAKLRWIERHEPAVFGA  156 (508)
T ss_dssp             SSCBEEECTTSCBC---------SCEECTTCCCCHHHHHHHHHHSCHHHHHHHHSSCSSTTSHHHHHHHHHHHCHHHHHT
T ss_pred             CCcEEEECCCCCCc---------ccceeccccChHHHHHHHHhhccHHHHHHHHCCCCChhhHHHHHHHHHHcCHHHHHH
Confidence             554  49999999         8999999999999999998874  678999999999999999999999999999999


Q ss_pred             cceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccc
Q 007076          208 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA  287 (619)
Q Consensus       208 ~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~  287 (619)
                      +.+|++++|||.|+|||+.. ++.|+              +++|++||+++++||+++|+.+|||..+   ||    +++
T Consensus       157 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP----~i~  214 (508)
T 3ifr_A          157 IATVCGSYDYINMLLTGERV-VDRNW--------------ALEGGFIDLASGTVEADLVALAHIPPSA---VP----PAH  214 (508)
T ss_dssp             CSEEECHHHHHHHHHHCCCC-EEHHH--------------HHHHTCEETTTTEECHHHHHTTTSCGGG---SC----CEE
T ss_pred             HhhhcCchHHHHHHhcCCcc-ccHhH--------------hhcccCccCccCCCCHHHHHHcCCCHHH---CC----CCc
Confidence            99999999999999999874 34443              5578899999999999999999999753   46    688


Q ss_pred             cCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccc
Q 007076          288 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK  367 (619)
Q Consensus       288 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~  367 (619)
                      ++++++|. |++++|+++||++|+||++|++|++|+++|+ ++.++              +++.+++|||+++.+.++++
T Consensus       215 ~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~  278 (508)
T 3ifr_A          215 PTHRVLGA-VTAEAAALTGLPTGLPVYGGAADHIASALAA-GITRP--------------GDVLLKFGGAGDIIVASATA  278 (508)
T ss_dssp             CTTSEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-TCCST--------------TEEEEEESSSEEEEECBSCC
T ss_pred             CCCCeeec-cCHHHHHHhCCCCCCeEEEECchHHHHHHhC-CCCCC--------------CcEEEEechhhhheeeCCCc
Confidence            99999997 9999999999999999999999999999998 55543              68999999999999999988


Q ss_pred             cccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCC-HHHHHHHHHHhhhhccCCCCccCC
Q 007076          368 LFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS-LFELLNGTLESMIHERNSPFVAAL  446 (619)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~p~~~~g  446 (619)
                      ..++.. ..+ ++..++.|+++++++++|.+++|+++.+..          .+.+ .|+++++++++.         +++
T Consensus       279 ~~~~~~-~~~-~~~~~g~~~~~g~~~~~G~~~~W~~~~~~~----------~~~~~~~~~l~~~a~~~---------~~~  337 (508)
T 3ifr_A          279 KSDPRL-YLD-YHLVPGLYAPNGCMAATGSALNWLAKLLAP----------EAGEAAHAQLDALAAEV---------PAG  337 (508)
T ss_dssp             CCBTTB-BCC-BCSSTTCBCCEEEESSSHHHHHHHHHHHST----------TCTTHHHHHHHHHHHTS---------CTT
T ss_pred             ccCCCc-cee-eeecCCceEEechhhhhHHHHHHHHHHHhh----------cCCCCCHHHHHHHHhcC---------CCC
Confidence            776663 233 345588999999999999999999998731          0111 477888777652         358


Q ss_pred             CCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCH
Q 007076          447 TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP  526 (619)
Q Consensus       447 ~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~  526 (619)
                      ++|++|+|||+|+|+|+||+++||+|+|++..|++.|+   +||++||+||++|++++.|++.|.++++|+++||++||+
T Consensus       338 ~~gl~flP~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~  414 (508)
T 3ifr_A          338 ADGLVCLPYFLGEKTPIHDPFASGTFTGLSLSHTRGHL---WRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRSR  414 (508)
T ss_dssp             GGGCEEECCTTCCC----CCCCCCEEESCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGGGGCH
T ss_pred             CCCeEEecCCCCCCCCCCCCCcCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcccCH
Confidence            99999999999999999999999999999999999986   569999999999999999998888999999999999999


Q ss_pred             HHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 007076          527 LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQ  606 (619)
Q Consensus       527 ~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~  606 (619)
                      +|+||+||++|+||+++...|++|+|||++|++++|.|+|++++. ++.+..++|+|  +++.++.|+++|++|+++|++
T Consensus       415 ~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~~y~~~y~~~~~~~~~  491 (508)
T 3ifr_A          415 VWMGIMADVLQRPVQLLANPLGSAVGAAWVAAIGGGDDLGWDDVT-ALVRTGEKITP--DPAKAEVYDRLYRDFSALYAT  491 (508)
T ss_dssp             HHHHHHHHHHTSCEEEEECCSTHHHHHHHHHHHHTCSSCCGGGGG-GGSEEEEEECC--CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCeEEecCCCCchHHHHHHHHHHHhCCCCCHHHHH-hhcCCCeEECc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998864 47778889999  999999999999999999999


Q ss_pred             HHHHH
Q 007076          607 QVSQR  611 (619)
Q Consensus       607 ~~~~~  611 (619)
                      +++..
T Consensus       492 ~~~~~  496 (508)
T 3ifr_A          492 LHPFF  496 (508)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=100.00  E-value=9.8e-91  Score=769.10  Aligned_cols=485  Identities=21%  Similarity=0.295  Sum_probs=428.1

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      |+|+||||+|||++|++|+|.+|+++...+.+++.. +.+||+||||++||+++++++++++ +.++...+|.+|||++|
T Consensus         4 m~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~~~~I~~Igis~q   82 (511)
T 3hz6_A            4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDARRVSAIVLSGQ   82 (511)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCCGGGEEEEEEEEC
T ss_pred             ccEEEEEEeCCCceEEEEECCCCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCChhHeEEEEEecc
Confidence            479999999999999999999999999999999865 4899999999999999999999998 66666788999999998


Q ss_pred             -ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 -CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 -~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                       +++  ||++|+|+         +|+|+|+|.|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|++
T Consensus        83 ~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  153 (511)
T 3hz6_A           83 MQNFLPLDQDHEPL---------HRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGR  153 (511)
T ss_dssp             CSCBEEECTTSCBS---------SCEECTTCCCCHHHHHHHHHHHCHHHHHHHHSSCCSTTSHHHHHHHHHHHCHHHHTT
T ss_pred             cccEEEECCCcCCC---------cCceecCCCCHHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhChHHHHH
Confidence             664  49999999         8999999999999999998764  678999999999999999999999999999999


Q ss_pred             cceeee-chhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCccc
Q 007076          208 VFRWMD-LSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV  286 (619)
Q Consensus       208 ~~~~~~-~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v  286 (619)
                      +.+|++ ++|||.|+|||+.. ++.|+              ||+|++||+++++||+++|+.+||++.+   ||    ++
T Consensus       154 ~~~~l~~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP----~i  211 (511)
T 3hz6_A          154 LRHVVLGAKDYVVLRLTGRHA-TDRTN--------------ASTTGLYRPKDDAWHVELLADYGFSLDL---MP----RL  211 (511)
T ss_dssp             CCEEECSHHHHHHHHHHSCCE-ECHHH--------------HHHTTCEETTTTEECHHHHHHTTCCGGG---SC----EE
T ss_pred             HHHHhcCcHHHHHHHHhCCce-eeHhH--------------hhcccceeCCCCCcCHHHHHHhCCCHHH---CC----CC
Confidence            999999 99999999999874 34443              5678899999999999999999999753   46    68


Q ss_pred             ccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeec-
Q 007076          287 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSR-  365 (619)
Q Consensus       287 ~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~-  365 (619)
                      +++++++|. |++++|+++||++||||++|++|++|+++|+ ++.++              +++.+++|||+++.+.++ 
T Consensus       212 ~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~  275 (511)
T 3hz6_A          212 LEPGEQVGG-VSALAARQTGFVSGTPVLCGLGDAGAATLGV-GVLDD--------------EDAYLHLGTTGWLARLTQT  275 (511)
T ss_dssp             CCTTSEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEEEEEEC
T ss_pred             cCCCCcccc-cCHHHHHhhCCCCCCeEEEECchHHHHHHhC-CCCCC--------------CcEEEEecchhhheeecCC
Confidence            899999997 9999999999999999999999999999998 55543              689999999999999998 


Q ss_pred             ccccc-CCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCcc
Q 007076          366 NKLFI-PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA  444 (619)
Q Consensus       366 ~~~~~-~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~  444 (619)
                      +|..+ +......+.+..++.|..+++++++|.+++|+++.+...          ....|+++++++++.+         
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~----------~~~~~~~l~~~a~~~~---------  336 (511)
T 3hz6_A          276 DPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHR----------PGEDCAEYFHMAAAEV---------  336 (511)
T ss_dssp             CCCCSCCSSCCEEECSSSTTEEEEEEEESSSHHHHHHHGGGGTCC----------TTSCSHHHHHHHHHHH---------
T ss_pred             eecccCCCCceEEEEEecCCceEEEeehhhHHHHHHHHHHHhccc----------ccccHHHHHHHHHhCC---------
Confidence            88766 543222223455777666699999999999999887410          0135788888877643         


Q ss_pred             CC---CCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC
Q 007076          445 AL---TEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG  521 (619)
Q Consensus       445 ~g---~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG  521 (619)
                      ++   ++|++|+|||+|+|+|+||+++||+|+|++..|++.|+.   ||++||+||++|++++.|++ |. +++|+++||
T Consensus       337 ~g~~~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~---RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GG  411 (511)
T 3hz6_A          337 QGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQIL---LAVLEGAALSLRWCAELLGM-EK-VGLLKVVGG  411 (511)
T ss_dssp             TTCCCCTTCEEEEESSCBCSSSCBSSCEEEEECCCTTCCHHHHH---HHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESG
T ss_pred             CCCCCCCCEEEeCCCCCCCCCCCCCccceEEEcCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCc
Confidence            46   899999999999999999999999999999999999865   59999999999999999998 88 999999999


Q ss_pred             CcCCHHHHHHHHhhhCCce-eecCCCCccchHHHHHHHhhccccCCHHHHHHHh---hcCCeEEcCCCChhhHHHHHHHH
Q 007076          522 LAKNPLFLQQHADIIGCPI-ILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM---NAAGQVIHPSKDPKVKKYHDAKY  597 (619)
Q Consensus       522 ~a~s~~~~Qi~Advlg~pV-~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~---~~~~~~~~P~~~~~~~~~y~~~y  597 (619)
                      ++||++|+||+||++|+|| +++...|++|+|||++|++++|.|++++++.+++   .+..++|+|  +++.++.|+++|
T Consensus       412 ga~s~~~~Qi~ADv~g~pV~~~~~~~e~~alGaA~lA~~a~G~~~~~~~~~~~~~~~~~~~~~~~P--~~~~~~~y~~~y  489 (511)
T 3hz6_A          412 GARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHP--QPCDEGRRRRKF  489 (511)
T ss_dssp             GGGCHHHHHHHHHHHTCEEEECCCGGGHHHHHHHHHHHHHTTSCSCHHHHHHHHHTC---CCCBCC--CCCCHHHHHHHH
T ss_pred             hhcCHHHHHHHHHHHCCeeEEecCCCCchHHHHHHHHHHHhCCcCCHHHHHHHhhccCCCCeEECc--CHHHHHHHHHHH
Confidence            9999999999999999999 9999999999999999999999999998888888   788889999  899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007076          598 LIFRELFEQQVSQRS  612 (619)
Q Consensus       598 ~~y~~l~~~~~~~~~  612 (619)
                      ++|+++|++++++.+
T Consensus       490 ~~~~~~~~~l~~~~~  504 (511)
T 3hz6_A          490 ERFKQCVETLGRLDE  504 (511)
T ss_dssp             HHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHhhhcc
Confidence            999999999987654

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.8e-86  Score=733.43  Aligned_cols=478  Identities=19%  Similarity=0.319  Sum_probs=407.9

Q ss_pred             CCCCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 007076           50 PARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVG  128 (619)
Q Consensus        50 ~~m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIg  128 (619)
                      ++||++|+||||+|||++|++++|.+|+++...+.+++.. +.+||.||||++||+++++++++++++.++.+.+|.+||
T Consensus        21 ~~MM~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Ig  100 (520)
T 4e1j_A           21 QSMMGGYILAIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIG  100 (520)
T ss_dssp             CCCCSCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             HHHhhCeEEEEEeCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence            5577789999999999999999999999999999999754 589999999999999999999999988776678999999


Q ss_pred             EcCc-ccc--cc-CCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCc
Q 007076          129 FAAT-CSL--VD-ADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQ  202 (619)
Q Consensus       129 is~~-~~~--vd-~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~p  202 (619)
                      |++| +++  || ++|+|+         +|+|.|+|.|+.++++++++..  ++++++||+++++.++++||+|+++|+|
T Consensus       101 is~~g~~~v~~D~~~G~~l---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P  171 (520)
T 4e1j_A          101 ITNQRETVVVWDRETGKPI---------HNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVK  171 (520)
T ss_dssp             EEECSSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSSCSSTTSHHHHHHHHHHHST
T ss_pred             EeCCcceEEEEECCCCeEC---------ccccccccCCHHHHHHHHHhcccHHHHHHHHCCCCCchhHHHHHHHHHHcCh
Confidence            9998 554  59 579999         8999999999999999998874  6789999999999999999999999999


Q ss_pred             hhHhccce----eeechhHHHhhhcCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccc
Q 007076          203 ESWSMVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDG  277 (619)
Q Consensus       203 e~~~~~~~----~~~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~  277 (619)
                      |+|+++++    |++++|||.|+|||+. ..++.|+              +|+|++||+++++||+++|+.+||++.+  
T Consensus       172 e~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~--  235 (520)
T 4e1j_A          172 GAQVRAAKGELCFGTIDTFLIWRLTGGECFCTDATN--------------ASRTLLYNIAENAWDDELTEVLRVPKEM--  235 (520)
T ss_dssp             THHHHHHTTCEEEEEHHHHHHHHHTTTCCCEEEHHH--------------HTTSSSEETTTTEECHHHHHHHTCCGGG--
T ss_pred             HHHHHHhcCCeEecCHHHHHHHHhcCCCeeeecHHH--------------hhhhcccccccCCCCHHHHHHcCCCHHH--
Confidence            99999874    7789999999999973 2344443              5678899999999999999999999754  


Q ss_pred             cccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEeccc
Q 007076          278 HHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTS  357 (619)
Q Consensus       278 ~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs  357 (619)
                       ||    +++++++++|. ++++     ||++|+||++|++|++|+++|+ |+.++              +++.+++|||
T Consensus       236 -LP----~i~~~~~~~G~-~~~~-----~l~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs  289 (520)
T 4e1j_A          236 -LP----EVKDCAADFGV-TDPS-----LFGAAIPILGVAGDQQAATIGQ-ACFKP--------------GMLKSTYGTG  289 (520)
T ss_dssp             -SC----EEECSBSCCCB-CCHH-----HHTSCCBEEEECCHHHHHHHHT-TCCST--------------TCEEEEESSS
T ss_pred             -CC----ceecCCCceee-eChh-----hCCCCCeEEEECCcHHHHHHhC-CCCCC--------------CcEEEEecCc
Confidence             46    68899999997 8864     5678999999999999999998 55543              5899999999


Q ss_pred             ceeeeee-ccccccC-Cccccccccc-cCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhh
Q 007076          358 TCHMAVS-RNKLFIP-GVWGPFWSAM-VPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM  434 (619)
Q Consensus       358 ~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  434 (619)
                      +++...+ +++..++ +.+..+++.. .++.|.++++++++|.+++|+++.+..            ...|+++++++++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~  357 (520)
T 4e1j_A          290 CFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGAAVQWLRDGLKV------------IKAAPDTGSLAESA  357 (520)
T ss_dssp             EEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHHHHHHHHHTTCC------------C-----CHHHHHTS
T ss_pred             hheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHHHHHHHHHHcCC------------cccHHHHHHHHhcC
Confidence            9877766 5555443 3332222222 124799999999999999999998742            12356677766542


Q ss_pred             hhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C
Q 007076          435 IHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH----G  510 (619)
Q Consensus       435 ~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~----g  510 (619)
                                ++++|++|+|||+|+|+|+||+++||+|+|++.+|++.|++   ||++||+||++|++++.|++.    |
T Consensus       358 ----------~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~l~---RAvlEgia~~~r~~l~~l~~~~~~~g  424 (520)
T 4e1j_A          358 ----------DPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFA---RAALEAVCYQTRDLLEAMHKDWRRNG  424 (520)
T ss_dssp             ----------CTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             ----------CCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence                      36899999999999999999999999999999999999865   599999999999999999875    6


Q ss_pred             CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhH
Q 007076          511 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK  590 (619)
Q Consensus       511 ~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~  590 (619)
                       ++++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++. ++....++|+|  +++++
T Consensus       425 -~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~~~~~~~-~~~~~~~~~~P--~~~~~  500 (520)
T 4e1j_A          425 -NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFA-KSWARDRRFEP--HMDEA  500 (520)
T ss_dssp             ---CCEEEESGGGGCHHHHHHHHHHHTSCEEEESCCCHHHHHHHHHHHHHHTSSCCHHHHH-HTCCEEEEECC--CSCHH
T ss_pred             -CcceEEEeCccccCHHHHHHHHHHhCCeEEecCCCccHHHHHHHHHHHHcCCcCCHHHHH-hhcCCCeEECC--CCCHH
Confidence             889999999999999999999999999999999999999999999999999999999875 55677889999  87776


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 007076          591 KYHDAKYLIFRELFEQQV  608 (619)
Q Consensus       591 ~~y~~~y~~y~~l~~~~~  608 (619)
                      + |+++|++|+++|++..
T Consensus       501 ~-~~~~y~~~~~~~~~~~  517 (520)
T 4e1j_A          501 T-RKVKLKGWRSAVKRTL  517 (520)
T ss_dssp             H-HHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHh
Confidence            6 7999999999998764

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=100.00  E-value=1.4e-85  Score=724.63  Aligned_cols=475  Identities=25%  Similarity=0.366  Sum_probs=409.2

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-c
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C  133 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~  133 (619)
                      |+||||+|||++|++++|.+|++++..+.+++.+. .+||.||||++||+++++++++++++.  ...+|.+|||++| +
T Consensus         1 ~~lgiDiGtt~~k~~l~d~~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~--~~~~i~~Igis~~~~   78 (484)
T 2itm_A            1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAGQMH   78 (484)
T ss_dssp             CEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHS--CCTTCCEEEEEECSS
T ss_pred             CEEEEEecCcccEEEEECCCCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhC--CccceEEEEEcCCcC
Confidence            37999999999999999999999999999998654 899999999999999999999998764  2568999999998 5


Q ss_pred             cc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCCChHHHHHHHHHhCchhHhcccee
Q 007076          134 SL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW  211 (619)
Q Consensus       134 ~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~  211 (619)
                      ++  ||++|+|+         +|+|.|+|.|+.++++++++....++++||+++++.++++||+|+++|+||+|+++.+|
T Consensus        79 ~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~  149 (484)
T 2itm_A           79 GATLLDAQQRVL---------RPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV  149 (484)
T ss_dssp             CBEEECTTCCBC---------SCEECTTCCTTHHHHHHHHHHCTTHHHHHSSCCCTTSHHHHHHHHHHHCHHHHTTCCEE
T ss_pred             cEEEECCCcCCC---------cccceecccCcHHHHHHHHHhHHHHHHHhCCCCCcccHHHHHHHHHHhChHHHHHHhhe
Confidence            54  49999999         89999999999999999987655677889999999999999999999999999999999


Q ss_pred             eechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007076          212 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH  291 (619)
Q Consensus       212 ~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~~g~  291 (619)
                      ++++|||.|+|||+.. ++.|+              +++|++||+++++||+++|+.+||+..+   ||    +++++++
T Consensus       150 l~~~d~l~~~LTG~~~-td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lp----~i~~~~~  207 (484)
T 2itm_A          150 LLPKDYLRLRMTGEFA-SDMSD--------------AAGTMWLDVAKRDWSDVMLQACDLSRDQ---MP----ALYEGSE  207 (484)
T ss_dssp             ECHHHHHHHHHHSCCE-EEHHH--------------HHTTTCEETTTTEECHHHHHTTTCCGGG---SC----EEECTTS
T ss_pred             eCcHHHHHHHHhCCce-eeHHH--------------hhccccccCCCCCcCHHHHHHcCCCHHH---CC----CccCCcc
Confidence            9999999999999864 34443              5678899999999999999999999753   36    7889999


Q ss_pred             ccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccC
Q 007076          292 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP  371 (619)
Q Consensus       292 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~  371 (619)
                      ++|. |++++|+++||+ |+||++|+||++|+++|+ ++..+              +++.+++|||+++..+++.+..++
T Consensus       208 ~~G~-~~~~~a~~~Gl~-g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~  270 (484)
T 2itm_A          208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDA--------------NQAMLSLGTSGVYFAVSEGFLSKP  270 (484)
T ss_dssp             EEEE-CCHHHHHHHTSC-CCEEECCEEHHHHHHHHH-TCCST--------------TCEEEEESSSEEEEEECSSCCCCC
T ss_pred             eeec-cCHHHHHHhCCC-CCeEEEEchHHHHHHHhC-CCCCC--------------CcEEEEccchheeEEecCCCccCc
Confidence            9997 999999999999 999999999999999998 44433              579999999999988888776554


Q ss_pred             Cc-cccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCce
Q 007076          372 GV-WGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDI  450 (619)
Q Consensus       372 ~~-~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl  450 (619)
                      .. ...+ .+..++.|+++++++++|.+++|+++.+.             ...|+.+++++++.         +++++|+
T Consensus       271 ~~~~~~~-~~~~~g~~~~~~~~~~~G~~~~W~~~~~~-------------~~~~~~~~~~a~~~---------~~~~~gl  327 (484)
T 2itm_A          271 ESAVHSF-CHALPQRWHLMSVMLSAASCLDWAAKLTG-------------LSNVPALIAAAQQA---------DESAEPV  327 (484)
T ss_dssp             SSSCEEE-ECSSTTCEEEEEEECCHHHHHHHHHHHTT-------------CCSHHHHHHHGGGC---------CTTSCCC
T ss_pred             ccceEEe-ecccCCeeeeeehhhhHHHHHHHHHHhcC-------------cccHHHHHHHHhcC---------CCCCCCe
Confidence            32 1122 33457899999999999999999998763             12356666555432         3689999


Q ss_pred             EEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHH
Q 007076          451 HVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQ  530 (619)
Q Consensus       451 ~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Q  530 (619)
                      +|+|||.|+|+|+||+++||.|+|++..|++.|+.   ||++||++|++|++++.|++.|.++++|+++||++||++|+|
T Consensus       328 ~~lP~~~G~r~P~~~~~a~g~~~Gl~~~~~~~~~~---rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Q  404 (484)
T 2itm_A          328 WFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELA---RAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQ  404 (484)
T ss_dssp             EEEEEEC--------CCEEEEEEEEETTCCHHHHH---HHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHH
T ss_pred             EEeCCCCCCCCCCCCCCCceEEEcCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHH
Confidence            99999999999999999999999999999999865   599999999999999999988888899999999999999999


Q ss_pred             HHHhhhCCceeecCCCCc-cchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 007076          531 QHADIIGCPIILPRENES-VLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVS  609 (619)
Q Consensus       531 i~Advlg~pV~~~~~~e~-~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~  609 (619)
                      ++||++|+||+++...|. +|+|||++|++++|.|++++++.+.+ ...++|+|  +++.++.|+++|++|+++|++++.
T Consensus       405 i~Adv~g~pV~~~~~~e~~~alGAA~lA~~~~g~~~~~~~~~~~~-~~~~~~~P--~~~~~~~y~~~y~~~~~~~~~~~~  481 (484)
T 2itm_A          405 MLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQL-PLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLP  481 (484)
T ss_dssp             HHHHHHCCCEEEESCTTSCHHHHHHHHHHHHHCTTSCHHHHSCCC-CEEEEECC--CHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHhCCeEEeCCCCCcccHHHHHHHHHHHcCCcCCHHHHHHhc-CCCeEECC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998885 89999999999999999999876544 45678999  999999999999999999998764

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=100.00  E-value=1.8e-85  Score=726.53  Aligned_cols=477  Identities=19%  Similarity=0.339  Sum_probs=412.6

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++|+||||+|||++|++|+|.+|+++++.+.+++.+ +.+||+||||++||+++++++++++++.++...+|.+|||++|
T Consensus         4 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~   83 (506)
T 3h3n_X            4 KNYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITNQ   83 (506)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             CCEEEEEEcCCCceEEEEECCCCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEeeCC
Confidence            579999999999999999999999999999999764 5899999999999999999999999887777789999999998


Q ss_pred             -ccc--ccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 007076          133 -CSL--VDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  206 (619)
Q Consensus       133 -~~~--vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  206 (619)
                       +++  ||++ |+|+         +|+|+|+|.|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|+
T Consensus        84 ~~~~v~~D~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  154 (506)
T 3h3n_X           84 RETTVVWDKTTGQPI---------ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQE  154 (506)
T ss_dssp             SSCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCCCTTSHHHHHHHHHHHSTTHHH
T ss_pred             cccEEEEeCCCCeEC---------CCceEecCcchHHHHHHHHhccCHHHHHHHhCCCCCchhHHHHHHHHHHhCHHHHH
Confidence             654  5988 9999         8999999999999999998874  67899999999999999999999999999999


Q ss_pred             ccce----eeechhHHHhhhcCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076          207 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  281 (619)
Q Consensus       207 ~~~~----~~~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~  281 (619)
                      ++++    |++++|||.|+|||+. ..++.|+              +++|++||+++++||+++|+.+||++.+   || 
T Consensus       155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP-  216 (506)
T 3h3n_X          155 KADNGELLFGTIDSWLVWKLTDGQVHVTDYSN--------------ASRTMLYNIHKLEWDQEILDLLNIPSSM---LP-  216 (506)
T ss_dssp             HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHH--------------HHTTTSEETTTTEECHHHHHHTTCCGGG---CC-
T ss_pred             HHhcCCeEEecHHHHHHHHhcCCceeeeEHHH--------------hhhhhCeecCCCCcCHHHHHHcCcCHHH---CC-
Confidence            9885    7889999999999953 2344443              5678899999999999999999999754   46 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076          282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  361 (619)
Q Consensus       282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~  361 (619)
                         +++++++++|. +++++  ++|  +||||++|++|++|+++|+ ++..+              +++.+++|||+++.
T Consensus       217 ---~i~~~~~~~G~-~~~~~--~lg--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~  273 (506)
T 3h3n_X          217 ---EVKSNSEVYGH-TRSYR--FYG--SEVPIAGMAGDQQAALFGQ-MAFEK--------------GMIKNTYGTGAFIV  273 (506)
T ss_dssp             ---EEECSEEEEEE-CCGGG--TTT--CCCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---ceecCCCccee-eChHH--hcC--CCCeEEEECCcHHHHHHhC-CCCCC--------------CcEEEEecchheee
Confidence               78899999997 99876  366  8999999999999999998 55543              68999999999776


Q ss_pred             eeec-cccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhc
Q 007076          362 AVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE  437 (619)
Q Consensus       362 ~~~~-~~~~~~-~~~~~~~~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  437 (619)
                      ..+. ++...+ +.+..++ +..++  .|.++++++++|.+++|+++.+..            .+.|+++++++++.   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~---  337 (506)
T 3h3n_X          274 MNTGEEPQLSDNDLLTTIG-YGINGKVYYALEGSIFVAGSAIQWLRDGLRM------------IETSPQSEELAAKA---  337 (506)
T ss_dssp             EEEETCCCSCCTTSEEEEE-EEETTEEEEEEEEEECCSSHHHHHHHHTSCC------------CSSTTHHHHHHTTC---
T ss_pred             eecCCccccCCCceEEEee-eecCCCCEEEEecchhhHHHHHHHHHHHcCC------------CCcHHHHHHHHhcC---
Confidence            6553 444333 3332232 22344  699999999999999999998742            12466777766542   


Q ss_pred             cCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007076          438 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL  516 (619)
Q Consensus       438 ~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I  516 (619)
                         |    ..+|++|+|||.|+|+|+||+++||+|+|++..|++.|++   ||++|||||++|++++.|++ .|.++++|
T Consensus       338 ---~----~~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~l~---RAvlEgia~~~r~~~~~l~~~~g~~~~~i  407 (506)
T 3h3n_X          338 ---K----GDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVIDTMKKDSGIDIPLL  407 (506)
T ss_dssp             ---C----SCSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHCSCCCEE
T ss_pred             ---C----CCCceEEeccccCCCCCccCCCCCEEEEccCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence               2    3489999999999999999999999999999999999865   59999999999999999987 58899999


Q ss_pred             EEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHH
Q 007076          517 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK  596 (619)
Q Consensus       517 ~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~  596 (619)
                      +++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++ .++.+..++|+|  +++.+ .|+++
T Consensus       408 ~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~~~-~~~~~  483 (506)
T 3h3n_X          408 KVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFTP--EMPAE-ERDNL  483 (506)
T ss_dssp             EEESGGGGCHHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHHTTSSCSHHHH-HTTCCCCCEECC--CSCHH-HHHHH
T ss_pred             EEecccccCHHHHHHHHHHhCCeEEecCCCcchhHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECC--CCCHH-HHHHH
Confidence            999999999999999999999999999999999999999999999999999986 456677899999  77654 58999


Q ss_pred             HHHHHHHHHHHHHH
Q 007076          597 YLIFRELFEQQVSQ  610 (619)
Q Consensus       597 y~~y~~l~~~~~~~  610 (619)
                      |++|+++|++++.|
T Consensus       484 y~~~~~~~~~~~~~  497 (506)
T 3h3n_X          484 YEGWKQAVAATQTF  497 (506)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998875

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=100.00  E-value=3.5e-85  Score=723.80  Aligned_cols=477  Identities=19%  Similarity=0.324  Sum_probs=412.1

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++|+||||+|||++|++|+|.+|+++++.+++++.. +.+||.||||++||+++++++++++++.++++.+|.+|||++|
T Consensus         5 ~~~~lgIDiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~   84 (501)
T 3g25_A            5 EKYILSIDQGTTSSRAILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRADQIAGIGITNQ   84 (501)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEEC
T ss_pred             ccEEEEEEeCccceEEEEEcCCCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEECC
Confidence            369999999999999999999999999999999754 5899999999999999999999999887777789999999998


Q ss_pred             -cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 007076          133 -CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  206 (619)
Q Consensus       133 -~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  206 (619)
                       ++  +||++ |+|+         +|+|+|+|.|+.++++++++..  ++++++||+++++.++++||+|+++|+||+|+
T Consensus        85 ~~~~v~~D~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~  155 (501)
T 3g25_A           85 RETTVVWDKHTGRPI---------YHAIVWQSRQTQSICSELKQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGARE  155 (501)
T ss_dssp             SSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHSCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred             cCcEEEEECCCCeEC---------CCceeeccCChHHHHHHHHhccCHHHHHHHHCCCCCchhHHHHHHHHHHhCHHHHH
Confidence             55  45998 9999         8999999999999999998864  67999999999999999999999999999999


Q ss_pred             ccce----eeechhHHHhhhcCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076          207 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  281 (619)
Q Consensus       207 ~~~~----~~~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~  281 (619)
                      ++++    |++++|||.|+|||+. ..++.|+              |++|++||+++++||+++|+.+||++.+   || 
T Consensus       156 ~~~~~~~l~~~~~dyl~~~LTG~~~~~td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---LP-  217 (501)
T 3g25_A          156 KAENGDLLFGTIDTWLVWKLSGKAAHITDYSN--------------ASRTLMFNIHDLEWDDELLELLTVPKNM---LP-  217 (501)
T ss_dssp             HHHTTCEEEEEHHHHHHHHHTTTSCCEEEHHH--------------HTTSSSEETTTTEECHHHHHHHTCCGGG---CC-
T ss_pred             HHhcCCeEEecHHHHHHHHhcCCCeeeeeHHH--------------hhcccCeeCCCCCCCHHHHHHhCcCHHH---CC-
Confidence            9987    7889999999999952 2344443              5678899999999999999999999754   46 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076          282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  361 (619)
Q Consensus       282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~  361 (619)
                         +++++++++|. ++++.  .+|  +|+||++|++|++|+++|+ ++.++              +++.+++|||+++.
T Consensus       218 ---~i~~~~~~~G~-~~~~~--~~g--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~  274 (501)
T 3g25_A          218 ---EVKASSEVYGK-TIDYH--FYG--QEVPIAGVAGDQQAALFGQ-ACFER--------------GDVKNTYGTGGFML  274 (501)
T ss_dssp             ---EEECSEEEEEE-CCGGG--TTT--CCCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---ceecCCCceec-cchHH--hCC--CCCeEEEECccHHHHHHhC-CCCCC--------------CcEEEEccchhhee
Confidence               78899999997 88763  345  8999999999999999998 55543              58999999999877


Q ss_pred             eeec-cccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhc
Q 007076          362 AVSR-NKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE  437 (619)
Q Consensus       362 ~~~~-~~~~~~-~~~~~~~~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  437 (619)
                      +.+. .+...+ +.+..++ +..++  .|.++|+++++|.+++|+++.+..            ...|+++++++++.   
T Consensus       275 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~---  338 (501)
T 3g25_A          275 MNTGDKAVKSESGLLTTIA-YGIDGKVNYALEGSIFVSGSAIQWLRDGLRM------------INSAPQSESYATRV---  338 (501)
T ss_dssp             EECTTSCCCCSSSCEEEEE-EEETTEEEEEEEEEESCSTHHHHHHHHTSCC------------CSSGGGHHHHHTTS---
T ss_pred             eecCCccccCCCCeEEEee-EecCCccEEEEecccccHHHHHHHHHHHcCC------------CCcHHHHHHHHhhC---
Confidence            6654 444433 3332232 23344  799999999999999999998742            12456677766542   


Q ss_pred             cCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007076          438 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL  516 (619)
Q Consensus       438 ~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I  516 (619)
                         |    ..+|++|+|||.|+|+|+||+++||+|+|++..|++.|++   ||++||+||++|++++.|++ .|.++++|
T Consensus       339 ---~----~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~---RAvlEgia~~~~~~~~~l~~~~g~~~~~i  408 (501)
T 3g25_A          339 ---D----STEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFI---RATLESLCYQTRDVMEAMSKDSGIDVQSL  408 (501)
T ss_dssp             ---S----CCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHSSCCCSEE
T ss_pred             ---C----CCCeEEEecccccCCCCCCCCCCCEEEEccCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence               2    3589999999999999999999999999999999999965   59999999999999999987 68899999


Q ss_pred             EEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHH
Q 007076          517 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK  596 (619)
Q Consensus       517 ~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~  596 (619)
                      +++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|+|++++ +++.+..++|+|  +++.+ .|+++
T Consensus       409 ~~~GG~aks~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~~~~~~~-~~~~~~~~~~~P--~~~~~-~~~~~  484 (501)
T 3g25_A          409 RVDGGAVKNNFIMQFQADIVNTSVERPEIQETTALGAAFLAGLAVGFWESKDDI-AKNWKLEEKFDP--KMDEG-EREKL  484 (501)
T ss_dssp             EEESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCTHHH-HHHCCEEEEECC--CCCHH-HHHHH
T ss_pred             EEecchhcCHHHHHHHHHHhCCceEecCCCcchHHHHHHHHHHHhCccCCHHHH-HHhccCCeEECC--CCCHH-HHHHH
Confidence            999999999999999999999999999999999999999999999999999986 556777889999  77665 49999


Q ss_pred             HHHHHHHHHHHHHH
Q 007076          597 YLIFRELFEQQVSQ  610 (619)
Q Consensus       597 y~~y~~l~~~~~~~  610 (619)
                      |++|+++|++.+.|
T Consensus       485 y~~~~~~~~~~~~~  498 (501)
T 3g25_A          485 YRGWKKAVEATQVF  498 (501)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998765

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=100.00  E-value=2.7e-85  Score=728.46  Aligned_cols=476  Identities=19%  Similarity=0.315  Sum_probs=405.9

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      +||+||||+||||+|++|||.+|++++..+++++.+ +.+||+||||++||+++++++++++++.++++.+|++|||++|
T Consensus         3 kkYvlgID~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~I~aIgis~q   82 (526)
T 3ezw_A            3 KKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQ   82 (526)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             ceEEEEEEccccceeeeEEcCCCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEeCC
Confidence            589999999999999999999999999999999865 4999999999999999999999999998888899999999998


Q ss_pred             -ccc--ccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHh
Q 007076          133 -CSL--VDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS  206 (619)
Q Consensus       133 -~~~--vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~  206 (619)
                       +++  ||++ |+|+         +|+|+|+|.|+.++++++.+..  +.++++||+++++.++++||+|+++|+|++|+
T Consensus        83 ~~~~v~~D~~~G~pl---------~~ai~W~D~R~~~~~~~l~~~~~~~~i~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~  153 (526)
T 3ezw_A           83 RETTIVWEKETGKPI---------YNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRE  153 (526)
T ss_dssp             SSCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHHCCCSSTTSHHHHHHHHHHHSTTHHH
T ss_pred             CCCEEEEECCCCeEc---------ccceecCCcchHHHHHHHHhhccHHHHHHHhCCCCCcccHHHHHHHHHHcCchHHH
Confidence             554  4875 9999         8999999999999999998875  56889999999999999999999999999999


Q ss_pred             ccce----eeechhHHHhhhcCCc-ccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076          207 MVFR----WMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  281 (619)
Q Consensus       207 ~~~~----~~~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~  281 (619)
                      ++.+    +..+++||.|+|||.. ..++.|+              +|+|++||+++++||+++|+.+||+..+   || 
T Consensus       154 ~~~~~~~~~~~i~~~L~~~Lt~g~~~~td~s~--------------As~t~l~d~~~~~w~~~ll~~~gi~~~~---LP-  215 (526)
T 3ezw_A          154 RARRGELLFGTVDTWLIWKMTQGRVHVTDYTN--------------ASRTMLFNIHTLDWDDKMLEVLDIPREM---LP-  215 (526)
T ss_dssp             HHHTTCEEEECHHHHHHHHHTTTSCCEEEHHH--------------HTTSSSEETTTTEECHHHHHHHTCCGGG---CC-
T ss_pred             HHHHhhhhccchhHHHhhhhcCCCceEEEchh--------------hccccCcCccccCcCHHHHHHcCCCHHH---CC-
Confidence            9876    6678899999999754 2344443              5688999999999999999999999854   36 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076          282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  361 (619)
Q Consensus       282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~  361 (619)
                         +++++++++|. ++++++    +..|+||++|++|++|+++|+ ++.++              +++.+++|||+++.
T Consensus       216 ---~i~~~~~~~G~-~~~~~~----~~~gipV~~g~gD~~aa~~G~-g~~~~--------------g~~~~s~GTs~~~~  272 (526)
T 3ezw_A          216 ---EVRRSSEVYGQ-TNIDGK----GGTRIPISGIAGDQQAALFGQ-LCVKE--------------GMAKNTYGTGCFML  272 (526)
T ss_dssp             ---EEECSEEEEEE-ECTTCT----TSCCEEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---CccccccccCc-cchhhh----cCCCCcEEEEcchHHHHhhhc-ccccc--------------ceeEEEeccCeeEe
Confidence               68899999997 887654    446789999999999999998 55544              68999999999988


Q ss_pred             eeeccccccCC--cccc-ccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhcc
Q 007076          362 AVSRNKLFIPG--VWGP-FWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER  438 (619)
Q Consensus       362 ~~~~~~~~~~~--~~~~-~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  438 (619)
                      +.+.++...+.  .... .+....++.|.++|+++++|.+++||++.+....           ..+ ..+. +...    
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~-----------~~~-~~~~-~~~~----  335 (526)
T 3ezw_A          273 MNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLIN-----------DAY-DSEY-FATK----  335 (526)
T ss_dssp             EECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEESCSHHHHHHHHHTSCCCC-----------SSS-CHHH-HHTT----
T ss_pred             cccCCccccccccceeeeeeccCCcceeeeHHHHHHHHHHHHHHHHHhcccc-----------chh-HHHH-HHhc----
Confidence            88877655442  2111 1222335579999999999999999999875311           011 1111 1111    


Q ss_pred             CCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEE
Q 007076          439 NSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLL  517 (619)
Q Consensus       439 ~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~  517 (619)
                           +++++|++|+|||+|+|+|+|||++||+|+||+..|++.|+.   ||++||+||++|++++.|++ .|.++++|+
T Consensus       336 -----~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~~~~~i~---RAvlEgia~~~r~~le~l~~~~g~~~~~i~  407 (526)
T 3ezw_A          336 -----VQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHII---RATLESIAYQTRDVLEAMQADSGIRLHALR  407 (526)
T ss_dssp             -----SSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCSEEE
T ss_pred             -----cCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence                 258999999999999999999999999999999999999965   59999999999999999986 689999999


Q ss_pred             EecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHH
Q 007076          518 ACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKY  597 (619)
Q Consensus       518 ~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y  597 (619)
                      ++||++||++|+||+||+||+||+++...|++|+|||++|++++|.|+|++|+.+.+ ...++|+|  +++.++ |.++|
T Consensus       408 v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~~alGAA~lA~~a~G~~~~~~e~~~~~-~~~~~~~P--~~~~~~-~~~~y  483 (526)
T 3ezw_A          408 VDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKA-VIEREFRP--GIETTE-RNYRY  483 (526)
T ss_dssp             EESGGGGCHHHHHHHHHHHTSEEEEESCCCHHHHHHHHHHHHHTTSSSCGGGSTTCC-CEEEEECC--CSCHHH-HHHHH
T ss_pred             EECchhhCHHHHHHHHHHHCCEEEeCCCCchHHHHHHHHHHHHhCCCCCHHHHHHhc-CCCeEEcC--CCCHHH-HHHHH
Confidence            999999999999999999999999999999999999999999999999999875544 46789999  778776 45689


Q ss_pred             HHHHHHHHHHH
Q 007076          598 LIFRELFEQQV  608 (619)
Q Consensus       598 ~~y~~l~~~~~  608 (619)
                      +.|++.+++-+
T Consensus       484 ~~w~~av~r~~  494 (526)
T 3ezw_A          484 AGWKKAVKRAM  494 (526)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHh
Confidence            99999887753

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=100.00  E-value=2.5e-84  Score=716.63  Aligned_cols=482  Identities=22%  Similarity=0.326  Sum_probs=419.1

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++|+||||+|||++|++++|.+|+++.+.+.+++.. +.+||.||||++||+++++++++++++.+++..+|.+|||++|
T Consensus         2 ~~~~lgiDiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~~Igis~~   81 (497)
T 2zf5_O            2 EKFVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTNQ   81 (497)
T ss_dssp             CCEEEEEEECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             CcEEEEEecCCchhEEEEECCCCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecC
Confidence            368999999999999999999999999999999754 5899999999999999999999999887666778999999998


Q ss_pred             -ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc-hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhcc
Q 007076          133 -CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN-SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMV  208 (619)
Q Consensus       133 -~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~-~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~  208 (619)
                       +++  ||++|+|+         +|+|.|+|.|+.++++++++.. ++++++||.++++.++++||+|+++|+|++|+++
T Consensus        82 ~~~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~  152 (497)
T 2zf5_O           82 RETTLVWDKDGKPL---------YNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKA  152 (497)
T ss_dssp             SSCEEEECTTCCBS---------SCEECTTCCTTHHHHHHHHHHHHHHHHHHHSSCCCTTSHHHHHHHHHHHSTTHHHHH
T ss_pred             CCcEEEECCCCCCc---------ccceeecccCcHHHHHHHHhhhHHHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHHH
Confidence             554  49999999         8999999999999999997652 5788999999999999999999999999999999


Q ss_pred             ce----eeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCc
Q 007076          209 FR----WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR  284 (619)
Q Consensus       209 ~~----~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~  284 (619)
                      ++    |++++|||.|+|||+.. ++.|+              +++|++||+++++||+++|+.+||+..+   ||    
T Consensus       153 ~~~~~~~~~~~d~l~~~LTG~~~-td~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP----  210 (497)
T 2zf5_O          153 EKGEVMFGTVDTFLIYRLTGEHV-TDYSN--------------ASRTMLFNIKKLDWDDELLELFDIPESV---LP----  210 (497)
T ss_dssp             HTTCCEEEEHHHHHHHHHHSCCE-EEHHH--------------HTTSSSEETTTTEECHHHHHHTTCCGGG---CC----
T ss_pred             hcCCCEEEcHHHHHHHHHhCCee-eeHHH--------------hhhhcCccCCCCCcCHHHHHHcCcCHHH---CC----
Confidence            87    89999999999999764 34443              5678899999999999999999999754   36    


Q ss_pred             ccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceeeeee
Q 007076          285 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS  364 (619)
Q Consensus       285 ~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~  364 (619)
                      +++++++++|. ++++   .+|  +|+||++|++|++|+++|+ ++..+              +++++++|||+++...+
T Consensus       211 ~i~~~~~~~G~-~~~~---~~g--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~  269 (497)
T 2zf5_O          211 EVRESSEVYGY-TKKE---LLG--AEIPVSGDAGDQQAALFGQ-AAFEA--------------GMVKATYGTGSFILVNT  269 (497)
T ss_dssp             EEECSEEEEEE-CCHH---HHS--SCCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEEEEE
T ss_pred             CcCCCCCeeee-cCHH---HcC--CCCeEEEEccHHHHHHHhC-CCCCC--------------CcEEEEcchhheeeEEC
Confidence            78899999997 9987   588  8999999999999999998 44433              58999999999998888


Q ss_pred             ccccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCC
Q 007076          365 RNKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP  441 (619)
Q Consensus       365 ~~~~~~~-~~~~~~~~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p  441 (619)
                      ++|..++ +....++ +..++  .|+++++++++|.+++|+++.+..            ...|+++++++++      + 
T Consensus       270 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~G~~~~w~~~~~~~------------~~~~~~l~~~a~~------~-  329 (497)
T 2zf5_O          270 DKMVLYSDNLLTTIA-WGLNGRVSYALEGSIFVTGAAVQWLRDGIKI------------IKHASETEELATK------L-  329 (497)
T ss_dssp             ETCCCCCTTSEEEEE-EEETTEEEEEEEEEESCSHHHHHHHHHTSCC------------CSCGGGHHHHHTT------S-
T ss_pred             CCCccCCCCcEEEEE-EEcCCCCEEEEechhhhHHHHHHHHHHHhCC------------CCcHHHHHHHHhh------C-
Confidence            8776544 2222232 22333  799999999999999999987642            1235566665543      2 


Q ss_pred             CccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC
Q 007076          442 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG  521 (619)
Q Consensus       442 ~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG  521 (619)
                         ++++|++|+|||.|+|+|+||+++||.|+|++..|++.|++   ||++||+||+++++++.|++.+ ++++|+++||
T Consensus       330 ---~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG  402 (497)
T 2zf5_O          330 ---ESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLA---RATLEAIAYLTRDVVDEMEKLV-QIKELRVDGG  402 (497)
T ss_dssp             ---SSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESG
T ss_pred             ---CCCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCc
Confidence               25889999999999999999999999999999999999975   5999999999999999998877 8899999999


Q ss_pred             CcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHH
Q 007076          522 LAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFR  601 (619)
Q Consensus       522 ~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~  601 (619)
                      ++||++|+|++||++|+||+++...|++|+|||++|++++|.|++++++. ++....++|+|  +++. +.|+++|++|+
T Consensus       403 ~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~g~~~~~~~~~-~~~~~~~~~~P--~~~~-~~y~~~y~~~~  478 (497)
T 2zf5_O          403 ATANDFLMQFQADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTREIA-ELWKAERIFEP--KMDE-KTRERLYKGWK  478 (497)
T ss_dssp             GGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTSSCCHHHHH-TTCCEEEEECC--CCCH-HHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhhcCCeEEEcCCCcchHHHHHHHHHHHhCccCCHHHHH-HhcCCCeEECC--CccH-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999874 55566788999  8787 89999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 007076          602 ELFEQQVSQRSIMAQAL  618 (619)
Q Consensus       602 ~l~~~~~~~~~~~~~~~  618 (619)
                      ++|++++.|+++|..++
T Consensus       479 ~~~~~~~~~~~~~~~~~  495 (497)
T 2zf5_O          479 EAVKRAMGWAKVVDSAK  495 (497)
T ss_dssp             HHHHTTTTGGGTCCCC-
T ss_pred             HHHHHHHhHhhhhhhhc
Confidence            99999999988776543

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=100.00  E-value=1.3e-83  Score=712.09  Aligned_cols=474  Identities=18%  Similarity=0.285  Sum_probs=412.5

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLA--NVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~--~~~~~~I~aIgis~  131 (619)
                      +|+||||+|||++|++++|.+|+++.+.+.+++.. +.+||.||||++||+++++++++++++.  ++...+|.+|||++
T Consensus         4 ~~~lgIDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~~~i~~Igis~   83 (503)
T 2w40_A            4 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITN   83 (503)
T ss_dssp             EEEEEEEECSSEEEEEEEETTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             cEEEEEEeCCcceEEEEECCCCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCccceEEEEEcC
Confidence            68999999999999999999999999999999765 4899999999999999999999998875  45567899999999


Q ss_pred             c-cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhH
Q 007076          132 T-CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESW  205 (619)
Q Consensus       132 ~-~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~  205 (619)
                      | ++  +||++ |+|+         +|+|.|+|.|+.++++++.+..  +.++++||+++++.++++||+|+++|+|++|
T Consensus        84 ~~~~~~~~D~~~G~~l---------~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~  154 (503)
T 2w40_A           84 QRETVIIWDRITGKPL---------YNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIK  154 (503)
T ss_dssp             CSSCEEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHHSCHHHHHHHHSSCCCSSSHHHHHHHHHHHCHHHH
T ss_pred             CcceEEEEECCCCcCC---------ccceeecccCcHHHHHHHHhccchHHHHHHhCCCCCcccHHHHHHHHHHhChHHH
Confidence            8 44  56988 9999         8999999999999999998764  5788999999999999999999999999999


Q ss_pred             hccce----eeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCC-cccccccc
Q 007076          206 SMVFR----WMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLG-DLIDGHHA  280 (619)
Q Consensus       206 ~~~~~----~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~-~~l~~~lp  280 (619)
                      +++++    |++++|||.|+|||+...++.|+              +|+|++||+++++||+++|+.+||+ +.+   ||
T Consensus       155 ~~~~~~~~~~~~~~d~l~~~LTG~~~~~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~~---lP  217 (503)
T 2w40_A          155 QKIDDGTAVIGNINTWLIFNLTKGNCYTDVTN--------------ASRTLLMDINTLQWDEKMCKIFNITNMSV---LP  217 (503)
T ss_dssp             HHHHTTCEEEEEHHHHHHHHHHTSCCEEEHHH--------------HTTTTCBCTTTCSBCHHHHHHTTCCCGGG---SC
T ss_pred             HHHhcCCeEEECHHHHHHHHHcCCCccccHHH--------------hhhhcCccCCCCccCHHHHHHcCCChHHH---CC
Confidence            99988    99999999999999522344443              5678899999999999999999999 653   46


Q ss_pred             ccCcccccCCCccCCCccHHHHHHcCCCC--CCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccc
Q 007076          281 KIGRSVAFPGHPLGSGLTPAAAKELGLVP--GTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST  358 (619)
Q Consensus       281 ~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~--g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~  358 (619)
                          +++++++++|. ++++   .+|  +  |+||++|++|++|+++|+ +...+              +++++++|||+
T Consensus       218 ----~i~~~~~~~G~-~~~~---~~g--~~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~  272 (503)
T 2w40_A          218 ----EIKSNCSNFGL-VKSE---HVP--DYLNIPITGCIGDQQSACIGQ-AIFDE--------------GEAKCTYGTGV  272 (503)
T ss_dssp             ----EEECSEEEEEE-CCCT---TSG--GGTTCEEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSE
T ss_pred             ----CccCCcCceee-ccHH---HcC--CCCCceEEEECchHHHHHHhC-CCCCC--------------CcEEEEechhh
Confidence                78899999997 8876   577  7  999999999999999998 44433              58999999999


Q ss_pred             eeeeeec-cccccCC-ccccccccccCC----eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHH
Q 007076          359 CHMAVSR-NKLFIPG-VWGPFWSAMVPK----FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLE  432 (619)
Q Consensus       359 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~----~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  432 (619)
                      ++...++ +|..++. .+..++ +..++    .|+++++++++|.+++||++ +..            .+.|++++++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~g~~~~~g~~~~w~~~-~~~------------~~~~~~l~~~a~  338 (503)
T 2w40_A          273 FLLINTGEKVVYSTCGLITTIC-YKFNDNDKPKYALEGSIGTAGSGVSWLLK-NKL------------IDDPSEASDIME  338 (503)
T ss_dssp             EEEEECTTSCCCCSSSCEEEEE-ECCSTTSCCEEEEEEEESCSHHHHHHHHH-TTS------------SSCGGGHHHHHH
T ss_pred             eeeeecCCccccCCCCceeEEE-eecCCCCCceEEEechhhhhHhHHHHHHH-hCC------------cCCHHHHHHHHh
Confidence            9988886 4655442 222232 33344    89999999999999999998 642            123667777665


Q ss_pred             hhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Q 007076          433 SMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGH  511 (619)
Q Consensus       433 ~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~  511 (619)
                      +.          ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|++   ||++||+||++|++++.|++ .|.
T Consensus       339 ~~----------~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~~~~~~~l~~~~g~  405 (503)
T 2w40_A          339 KC----------ENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIV---RALLEGIAFQLNEIVDSLTSDMGI  405 (503)
T ss_dssp             HC----------CSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hC----------CCCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            42          25889999999999999999999999999999999999865   59999999999999999976 577


Q ss_pred             Cc-CEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhH
Q 007076          512 KI-DTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK  590 (619)
Q Consensus       512 ~~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~  590 (619)
                      ++ ++|+++||++||++|+|++||++|+||+++...|++|+|||++|++++|.|++++++.+.+.+..++|+|  +++. 
T Consensus       406 ~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~~~e~~alGaA~la~~~~G~~~~~~~~~~~~~~~~~~~~P--~~~~-  482 (503)
T 2w40_A          406 EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHS--KMDD-  482 (503)
T ss_dssp             SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHTTCSSCHHHHHHHHTCEEEEECC--CSCH-
T ss_pred             CccceEEEeCccccCHHHHHHHHHHHCCeEEecCCCcchHHHHHHHHHHHhCccCCHHHHHHhccCCCcEEcc--CCCH-
Confidence            78 8999999999999999999999999999999999999999999999999999999988777777789999  8887 


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 007076          591 KYHDAKYLIFRELFEQQVS  609 (619)
Q Consensus       591 ~~y~~~y~~y~~l~~~~~~  609 (619)
                      +.|+++|++|+++|++...
T Consensus       483 ~~y~~~y~~~~~~~~~~~~  501 (503)
T 2w40_A          483 KKRKKKTSEWNKAVERTLI  501 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988643

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=100.00  E-value=1.2e-83  Score=716.63  Aligned_cols=475  Identities=15%  Similarity=0.094  Sum_probs=406.6

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-c----CCCc-------cccCHHH-HHHHHHHHHHHHHHHcCCCC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-K----EGDC-------IEQSSTD-IWHAICAAVDSACSLANVDG  121 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~----~~g~-------~e~dp~~-~~~~~~~~l~~~~~~~~~~~  121 (619)
                      +|+||||+|||++|++|||.+|+++++.+++++.. +    .+||       .||||++ ||+++..++ +.+.+.++++
T Consensus        10 ~~~lgID~GTts~Ka~l~d~~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~-~~l~~~~~~~   88 (538)
T 4bc3_A           10 RCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIIL-EKMKASGFDF   88 (538)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHH-HHHHHTTCCG
T ss_pred             CEEEEEEEcCcCEEEEEECCCCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHH-HHHHHcCCCh
Confidence            59999999999999999999999999999998643 2    2566       4678975 555555554 5556666677


Q ss_pred             CCEEEEEEcCc-ccc--ccCCCC--------------------eeeecCCCCCCccceeecccccHHHHHHHHccc---h
Q 007076          122 EEVKGVGFAAT-CSL--VDADGS--------------------PVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---S  175 (619)
Q Consensus       122 ~~I~aIgis~~-~~~--vd~~G~--------------------pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~---~  175 (619)
                      .+|++|||++| +++  ||++|+                    |+         +|+|+|+|.|+.++++++++..   +
T Consensus        89 ~~I~aIgis~q~~~~v~~D~~g~~~l~~l~~~~~l~~~~~~~~pl---------~~ai~W~D~R~~~~~~~l~~~~~~~~  159 (538)
T 4bc3_A           89 SQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSI---------SDCPVWMDSSTTAQCRQLEAAVGGAQ  159 (538)
T ss_dssp             GGEEEEEEEECSSCEEEEETTHHHHHHTCCTTSCHHHHHTTCBSC---------SEEECTTCCCCHHHHHHHHHHHTSHH
T ss_pred             HHeEEEEecccceeEEEECCCccccccccccccchhhhccccccc---------cCCcccccCcHHHHHHHHHHhhCcHH
Confidence            89999999998 664  498864                    66         8999999999999999998752   6


Q ss_pred             hHHhhhCCCCCCCChHHHHHHHHHhCchhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccC
Q 007076          176 PVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRD  255 (619)
Q Consensus       176 ~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d  255 (619)
                      +++++||+++++.|+++||+|+++|+||+|+++.+|++++|||.|+|||+...++.|+              +|+|++||
T Consensus       160 ~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~d~l~~~LTG~~~~td~s~--------------As~t~l~d  225 (538)
T 4bc3_A          160 ALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSD--------------GSGMNLLQ  225 (538)
T ss_dssp             HHHHHHSSCCCTTSHHHHHHHHHHHCHHHHHTEEEEEEHHHHHHHHHHTSCCCCBHHH--------------HTTSSCEE
T ss_pred             HHHHHHCCCCccccHHHHHHHHHHcCHHHHHHhheEEcHHHHHHHHHhCCCcccccch--------------hhcccccc
Confidence            7899999999999999999999999999999999999999999999999875455554              56788999


Q ss_pred             CcCCCCCHHHHHHcCCC-ccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCc
Q 007076          256 MEACGWDDEFWEEIGLG-DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPES  334 (619)
Q Consensus       256 ~~~~~W~~~ll~~~gi~-~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g  334 (619)
                      +++++||+++|+.+|++ +.   .||    +++++++++|. |++++|+++||++||||++|+||++|+++|+ +. ++ 
T Consensus       226 ~~~~~W~~~ll~~~gi~~~~---~LP----~i~~~~~~~G~-l~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-~~-~~-  294 (538)
T 4bc3_A          226 IQDKVWSQACLGACAPHLEE---KLS----PPVPSCSVVGA-ISSYYVQRYGFPPGCKVVAFTGDNPASLAGM-RL-EE-  294 (538)
T ss_dssp             TTTTEECHHHHHHHCTTHHH---HHC----CCBCSSCEEEE-CCHHHHHHHCCCTTCEEECCEEHHHHHHHHT-TC-CT-
T ss_pred             cccCCCCHHHHHHhCccHHH---HCC----Ccccccccccc-cCHHHHHHhCCCCCCeEEEecccHHhhhhcc-cc-CC-
Confidence            99999999999999998 43   346    68899999997 9999999999999999999999999999998 64 33 


Q ss_pred             chhhhhhhhhcccCeEEEEecccceeeeeeccccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHH
Q 007076          335 VSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLAN  414 (619)
Q Consensus       335 ~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~  414 (619)
                                   +++.+++|||+++.+.++++..++... .+++...++.|+.+++++++|.+++|+++.+.       
T Consensus       295 -------------g~~~~s~GTs~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gg~~~~w~~~~~~-------  353 (538)
T 4bc3_A          295 -------------GDIAVSLGTSDTLFLWLQEPMPALEGH-IFCNPVDSQHYMALLCFKNGSLMREKIRNESV-------  353 (538)
T ss_dssp             -------------TCEEEEESSSEEEEEEESSCCCCSSSE-EEEETTEEEEEEEEEEESSSHHHHHHHHHHHS-------
T ss_pred             -------------CcEEEEeccchheEEecCCCCCCCCcc-eEEeecCCCCEEEeehhhccchHHHHHHHHhc-------
Confidence                         689999999999999998877665432 23332334579999999999999999998763       


Q ss_pred             HHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEE------cCCCCCCHHHHHHHH
Q 007076          415 RAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIIC------GMTLDSSEKQLALLY  488 (619)
Q Consensus       415 ~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~------Gl~~~~~~~~l~~~~  488 (619)
                            ...|+++++++++.         +++++|++|+|||.|+|+|+    ++|.|.      |++. |++.|+   +
T Consensus       354 ------~~~~~~l~~~a~~~---------~~g~~gl~~lp~~~Ger~P~----~~G~~~~~~~~~g~~~-~~~~~l---~  410 (538)
T 4bc3_A          354 ------SRSWSDFSKALQST---------EMGNGGNLGFYFDVMEITPE----IIGRHRFNTENHKVAA-FPGDVE---V  410 (538)
T ss_dssp             ------TTCHHHHHHHHHTS---------CTTGGGCEEEEESSCCSSSC----CCEEEEECTTSCEESC-CCHHHH---H
T ss_pred             ------CCCHHHHHHHHhcC---------CCCCCCeEEeecCCCCcCCC----CCceeeeccccccccC-CCHHHH---H
Confidence                  23578888877653         36899999999999999997    455554      2333 677775   5


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccc--cCC
Q 007076          489 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR--YSS  566 (619)
Q Consensus       489 rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~--~~~  566 (619)
                      ||++|||||++|++++.|++.+.++++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.  |++
T Consensus       411 RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~a~G~~~~~~  490 (538)
T 4bc3_A          411 RALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVP  490 (538)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEECCCTTHHHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEecCCCCchHHHHHHHHHHHhCcccCCC
Confidence            699999999999999999877778899999999999999999999999999999999999999999999999998  899


Q ss_pred             HHHHHHHhhcCCeEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007076          567 LIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ  610 (619)
Q Consensus       567 ~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~  610 (619)
                      ++++.+.+....++|+|  ++++++.|+++|++|+++|+++..+
T Consensus       491 ~~ea~~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~l~~~~~~~  532 (538)
T 4bc3_A          491 FSEVVKLAPNPRLAATP--SPGASQVYEALLPQYAKLEQRILSQ  532 (538)
T ss_dssp             HHHHHTTSCCCEEEECC--CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCeeECC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888778889999  9999999999999999999998765

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=100.00  E-value=3.9e-83  Score=707.95  Aligned_cols=476  Identities=20%  Similarity=0.336  Sum_probs=413.2

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (619)
                      +|+||||+|||++|++++|.+|+++.+.+++++.. +.+||.||||++||+++++++++++++.+++..+|.+|||++| 
T Consensus         2 ~~~lgiDiGtts~k~~l~d~~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~g   81 (504)
T 2d4w_A            2 DYVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDIAAVGITNQR   81 (504)
T ss_dssp             CEEEEEEECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECS
T ss_pred             CEEEEEecCCcceEEEEECCCCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccEEEEEEeCCC
Confidence            47999999999999999999999999999999864 5899999999999999999999999887666678999999998 


Q ss_pred             cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 ~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                      ++  +||++ |+|+         +|+|.|+|.|+.++++++.+..  ++++++||+++++.++++||+|+++|+|++|++
T Consensus        82 ~~~v~vD~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  152 (504)
T 2d4w_A           82 ETAVVWDKTTGKPV---------YNAIVWQDTRTQKIVDELGGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREK  152 (504)
T ss_dssp             SCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHCSSCGGGGHHHHSCCSCTTSHHHHHHHHHHHSTTHHHH
T ss_pred             CeEEEEECCCCCCc---------cccceecccChHHHHHHHHhhcchHHHHHHhCCCCCchhHHHHHHHHHHcChhHHHH
Confidence            55  45987 9999         8999999999999999998743  678999999999999999999999999999999


Q ss_pred             cce----eeechhHHHhhhcC--C---cccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcccccc
Q 007076          208 VFR----WMDLSDWLSYRATG--D---DTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH  278 (619)
Q Consensus       208 ~~~----~~~~~dyl~~~LTG--~---~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~  278 (619)
                      +++    |++++|||.|+|||  .   . .++.|+              +|+|++||+++++||+++|+.+||++.+   
T Consensus       153 ~~~~~~~~~~~~d~l~~~LTG~~~~~~~-~~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---  214 (504)
T 2d4w_A          153 AEKGDLLFGNTDTWVLWNMTGGTEGGVH-VTDVTN--------------ASRTMLMDLDTLSWREDIAADMGIPLSM---  214 (504)
T ss_dssp             HHHTCEEEECHHHHHHHHHTTTTTTCCC-EEEHHH--------------HTTTTCEETTTTEECHHHHHHTTCCGGG---
T ss_pred             HhcCCeEEecHHHHHHHHhcCCCcCCce-eeehhh--------------hhhhcCccCCCCccCHHHHHHhCCCHHH---
Confidence            988    99999999999999  4   3 344443              5678899999999999999999999754   


Q ss_pred             ccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccc
Q 007076          279 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST  358 (619)
Q Consensus       279 lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~  358 (619)
                      ||    +++++++++|. ++++  +.+|  + +||++|++|++|+++|+ ++..+              +++.+++|||+
T Consensus       215 lP----~i~~~~~~~G~-~~~~--~~~G--~-~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~  269 (504)
T 2d4w_A          215 LP----DIRSSSEVYGH-GRPR--GLVP--G-VPIAGILGDQQAATFGQ-ACFEV--------------GQAKNTYGTGN  269 (504)
T ss_dssp             SC----EEECSEEEEEE-CCTT--SSST--T-CEEEEEEEHHHHHHHHT-TCCST--------------TEEEEEESSSE
T ss_pred             CC----CccCCccceec-cchH--HhCC--C-CeEEEECCcHHHHHhhC-CCCCC--------------CcEEEEcchhh
Confidence            36    78899999997 9875  3577  6 99999999999999998 44433              68999999999


Q ss_pred             eeeeeec-cccccC-CccccccccccCC---eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHh
Q 007076          359 CHMAVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLES  433 (619)
Q Consensus       359 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~---~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  433 (619)
                      ++.+.++ +|..++ +.+..++ +..++   .|+++++++++|.+++|+++.+..            .+.|+++++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~  336 (504)
T 2d4w_A          270 FLLLNTGTEKVMSKNGLLTTVC-YKIGDAPAVYALEGSIAVTGSLVQWLRDNLGM------------FEDAPDVEWLAGK  336 (504)
T ss_dssp             EEEEECTTSCCCCSSSCEEEEE-ECCTTSCCEEEEEEEESCSHHHHHHHHHTTCT------------TTTCSCTHHHHTT
T ss_pred             eeeeecCCccccCCCCcEEEEE-EEcCCCCceEEEcchhhhHHHHHHHHHHHhCC------------CCCHHHHHHHHhh
Confidence            9988885 465554 3322232 33345   899999999999999999987642            1234556665543


Q ss_pred             hhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Q 007076          434 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK  512 (619)
Q Consensus       434 ~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~  512 (619)
                      .          ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|++   ||++||+||++|++++.|++ .|.+
T Consensus       337 ~----------~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l~---rAvlEgia~~~~~~~~~l~~~~g~~  403 (504)
T 2d4w_A          337 V----------QDNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIA---RAALEATAFQSREVVDAMNADSGVD  403 (504)
T ss_dssp             S----------SSCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             C----------CCCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2          25889999999999999999999999999999999999875   59999999999999999976 5788


Q ss_pred             cCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHH
Q 007076          513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKY  592 (619)
Q Consensus       513 ~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~  592 (619)
                      +++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.|++++++. .+....++|+|  +++. +.
T Consensus       404 ~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~-~~  479 (504)
T 2d4w_A          404 LTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQDVI-DNWAEDKRWSP--SMES-GE  479 (504)
T ss_dssp             CCEEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSSCSHHHHH-HHCCEEEEECC--CSCH-HH
T ss_pred             cceEEEeCCcccCHHHHHHHHHHhCCeEEeCCCCcchHHHHHHHHHhhcCccCCHHHHH-hhcCCCeEEcc--CCCH-HH
Confidence            89999999999999999999999999999999999999999999999999999999975 56666788999  8887 89


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 007076          593 HDAKYLIFRELFEQQVSQRS  612 (619)
Q Consensus       593 y~~~y~~y~~l~~~~~~~~~  612 (619)
                      |+++|++|+++|++++.|.+
T Consensus       480 y~~~y~~~~~~~~~~~~~~~  499 (504)
T 2d4w_A          480 RERLYRNWKKAVTKTMEWVD  499 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccch
Confidence            99999999999999988743

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-82  Score=702.17  Aligned_cols=472  Identities=24%  Similarity=0.359  Sum_probs=409.5

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (619)
                      +|+||||+|||++|++++|.+|+++.+.+.+++.. +.+||.||||++||+++++++++++++.++...+|.+|||++| 
T Consensus         2 ~~~lgiDiGtT~~k~~l~d~~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~~Igis~~~   81 (495)
T 2dpn_A            2 AFLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITNQR   81 (495)
T ss_dssp             -CEEEEEECSSEEEEEEECTTSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEECS
T ss_pred             cEEEEEeeCCcceEEEEECCCCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCC
Confidence            57999999999999999999999999999999754 5899999999999999999999999887666678999999998 


Q ss_pred             cc--cccCC-CCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 CS--LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 ~~--~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                      ++  +||++ |+|+         +|+|.|+|.|+.++++++.+..  +.++++||+++++.++++||+|+++|+|++|++
T Consensus        82 ~~~~~vD~~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  152 (495)
T 2dpn_A           82 ETTLLWDRKTGKPL---------HNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKAR  152 (495)
T ss_dssp             SCBEEEETTTCCBS---------SCEECTTCCTTHHHHHHHHHTTCHHHHHHHTSCCSCTTSHHHHHHHHHHHSSSHHHH
T ss_pred             ccEEEEECCCCcCC---------ccceeecccChHHHHHHHHhccchhHHHHHhCCCCCchhHHHHHHHHHHcCHHHHHH
Confidence            54  56987 9999         8999999999999999998763  578899999999999999999999999999999


Q ss_pred             cce----eeechhHHHhhhcC--CcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076          208 VFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  281 (619)
Q Consensus       208 ~~~----~~~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~  281 (619)
                      +++    |++++|||.|+|||  ... ++.|+              +|+|++||+++++||+++|+.+||++.+   || 
T Consensus       153 ~~~~~~~~~~~~d~l~~~LTG~~~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP-  213 (495)
T 2dpn_A          153 AEGGGVAFGTVDTWLIWNLTGGKVHA-TDPTN--------------ASRTLLFNLHTLAWDPELLEALGIPAAL---LP-  213 (495)
T ss_dssp             HHHTCEEEECHHHHHHHHHTTTSCCE-ECHHH--------------HTTSSSEETTTTEECHHHHHHTTCCSTT---CC-
T ss_pred             HhcCCcEEECHHHHHHHHhcCCCeEE-EehHH--------------hHhhcCccCccCCcCHHHHHHcCCCHHH---CC-
Confidence            988    99999999999999  443 44443              5678899999999999999999999754   36 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEecccceee
Q 007076          282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM  361 (619)
Q Consensus       282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~  361 (619)
                         +++++++++|. ++++   .+|  +|+||++|++|++|+++|+ +...+              +++.+++|||+++.
T Consensus       214 ---~i~~~~~~~G~-~~~~---~~G--~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~  269 (495)
T 2dpn_A          214 ---EVRPSDGDFGE-TLPE---LLG--APVPIRGVLGDQQAALFGQ-AALGG--------------GEGKCTYGTGAFLL  269 (495)
T ss_dssp             ---EECCTTSCCCB-CCHH---HHS--SCCBEEEEEEHHHHHHHHT-TCCST--------------TCEEEEESSSEEEE
T ss_pred             ---CccCCCCeeEe-ccHH---HcC--CCCeEEEECcHHHHHHHhC-CCCCC--------------CcEEEEccHhhhhh
Confidence               68899999997 9987   588  8999999999999999998 44443              68999999999998


Q ss_pred             eeec-cccccCC-ccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhc
Q 007076          362 AVSR-NKLFIPG-VWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE  437 (619)
Q Consensus       362 ~~~~-~~~~~~~-~~~~~~~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  437 (619)
                      ..++ +|..++. .+..++ +..++  .|.++++++++|.+++|+++ +..            .+.|+++++++++.   
T Consensus       270 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~~~w~~~-~~~------------~~~~~~l~~~a~~~---  332 (495)
T 2dpn_A          270 LNTGKRPVLSEKGLLATVA-WSLGGRATYALEGSLFVAGAAVGWLKE-VGL------------IRESAEVEALAASV---  332 (495)
T ss_dssp             EECTTSCCCCSSSCEEEEE-EEETTEEEEEEEEEESCSHHHHHHHHH-TTS------------SSSTTTHHHHHHTC---
T ss_pred             hhcCCccccCCCCceEEEE-EEcCCCCEEEEechHHhHHHHHHHHHH-cCC------------ccCHHHHHHHHhhC---
Confidence            8885 4655442 222222 22343  79999999999999999998 642            12356676666542   


Q ss_pred             cCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007076          438 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL  516 (619)
Q Consensus       438 ~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g~~~~~I  516 (619)
                             ++++|++|+|||.|+|+|+||+++||+|+|++..|++.|++   ||++||+||+++++++.|++ .|.++++|
T Consensus       333 -------~~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~~~---rAvlEgia~~~~~~~~~l~~~~g~~~~~i  402 (495)
T 2dpn_A          333 -------EDTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLA---RAALEGVAFQVRDVVLAMEEEAGVRLKVL  402 (495)
T ss_dssp             -------SCCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHHH---HHHHHHHHHHHHHHHHHHHTTTSCCCCCE
T ss_pred             -------CCCCcEEEecCCCCCCCCCCCCCCceEEEecCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence                   25889999999999999999999999999999999999875   59999999999999999987 57788999


Q ss_pred             EEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHH
Q 007076          517 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK  596 (619)
Q Consensus       517 ~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~  596 (619)
                      +++||++||++|+|++||++|+||+++...|++|+|||++|++++|.| +++++. ++....++|+|  +++. +.|+++
T Consensus       403 ~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~e~~alGaA~la~~a~G~~-~~~~~~-~~~~~~~~~~P--~~~~-~~y~~~  477 (495)
T 2dpn_A          403 KADGGMAQNRLFLKIQADLLGVPVAVPEVTETTALGAALMAGVGAGAL-SPEDVA-GRFREAERFLP--TMPE-GRREAL  477 (495)
T ss_dssp             EEESGGGGCHHHHHHHHHHHTSCEEEESCSCHHHHHHHHHHHHHHTSC-CHHHHH-HHCCEEEEECC--CSCH-HHHHHH
T ss_pred             EEecccccCHHHHHHHHHHhCCeeEecCCcccHHHHHHHHHHhhcCcC-CHHHHH-HhcCCCeEEcc--CCCH-HHHHHH
Confidence            999999999999999999999999999999999999999999999999 999874 55566788999  8777 899999


Q ss_pred             HHHHHHHHHHHHHH
Q 007076          597 YLIFRELFEQQVSQ  610 (619)
Q Consensus       597 y~~y~~l~~~~~~~  610 (619)
                      |++|+++|++++.|
T Consensus       478 ~~~~~~~~~~~~~~  491 (495)
T 2dpn_A          478 YRRWREAVERAKGW  491 (495)
T ss_dssp             HHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999988655

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=100.00  E-value=9.5e-81  Score=688.40  Aligned_cols=454  Identities=20%  Similarity=0.243  Sum_probs=392.6

Q ss_pred             CCeEEEEEcCCcceEEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      ++|+||||+|||++|++||| ++|+++.+.+.+++     ||.||||++||++++++++++    +. ..+|.+|||++|
T Consensus         4 ~~~~lgIDiGtts~ka~l~d~~~G~i~~~~~~~~~-----g~~e~d~~~~~~~i~~~l~~~----~~-~~~I~~Igis~q   73 (515)
T 3i8b_A            4 RTLVAGVDTSTQSCKVRVTDAETGELVRFGQAKHP-----NGTSVDPSYWWSAFQEAAEQA----GG-LDDVSALAVGGQ   73 (515)
T ss_dssp             SCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-----SSSEECTHHHHHHHHHHHHHT----TC-STTEEEEEEEEC
T ss_pred             CcEEEEEEeccccEEEEEEECCCCeEEEEEEEeCC-----CCceECHHHHHHHHHHHHHhc----CC-ccCceEEEEeCC
Confidence            46899999999999999999 89999999888764     789999999999988888754    33 478999999998


Q ss_pred             -ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc------------------hhHHhhhCCCCCCCChH
Q 007076          133 -CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN------------------SPVLQYCGGAVSPEMQP  191 (619)
Q Consensus       133 -~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~------------------~~~~~~tG~~~~~~~~~  191 (619)
                       +++  ||++|+|+         +|+|+|+|.|+.++++++++..                  ++++++||+++++.+++
T Consensus        74 ~~~~v~~D~~G~pl---------~~~i~W~D~R~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~  144 (515)
T 3i8b_A           74 QHGMVILDNQGNVI---------RDAMLWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTL  144 (515)
T ss_dssp             SSCBEEECTTSCBC---------SCEECTTCCTTHHHHHHHHHHHHCSCCCTTCCSSHHHHHHHHHHHHHSSCCCTTSHH
T ss_pred             cceEEEECCCCCCc---------CCcceecCCCHHHHHHHHHHhcCcccccccccccccchhHHHHHHHHCCCCCchhHH
Confidence             554  49999999         8999999999999999998752                  57889999999999999


Q ss_pred             HHHHHHHHhCchhHhccceeeechhHHHhhhcCCc------------ccccccccccccccccchhhccccccccCCcCC
Q 007076          192 PKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDD------------TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEAC  259 (619)
Q Consensus       192 ~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~------------~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~  259 (619)
                      +||+|+++|+||+|+++.+|++++|||.|+|||+.            ..++.|              .+++|++||++++
T Consensus       145 ~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~~~~~~~~td~s--------------~As~t~l~d~~~~  210 (515)
T 3i8b_A          145 TKVAWVAENEPENVKKIAAICLPHDWLSWRIAGYGPVAEGEDAHLEALFTDRS--------------DASGTIYYDAASN  210 (515)
T ss_dssp             HHHHHHHHHCHHHHTTCSEEECHHHHHHHHHTTCCCCCTTSCCCGGGCEEEHH--------------HHTTSSSEETTTT
T ss_pred             HHHHHHHHcChHHHHHHheecCHHHHHHHHhcCCCcccccccccccceeecHH--------------HhhcccCeeCCcC
Confidence            99999999999999999999999999999999982            123433              3668899999999


Q ss_pred             CCCHHHHHHc-CCC-----------ccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcC
Q 007076          260 GWDDEFWEEI-GLG-----------DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV  327 (619)
Q Consensus       260 ~W~~~ll~~~-gi~-----------~~l~~~lp~l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~  327 (619)
                      +||+++|+.+ ||+           ..   .||    +++++++++|. |++++|+++||++||||++|++|++|+++|+
T Consensus       211 ~W~~~ll~~~~gi~~~~~~~~~~~~~~---~LP----~i~~~~~~~G~-v~~~~A~~~Gl~~g~pV~~g~~D~~aa~lG~  282 (515)
T 3i8b_A          211 EYRRDLIAMVLEAAEGAKAAQSHAEAI---VLP----TVLGPRDAAPV-KADPAIAGKNVEGGCLLAPGGGDNAMASLGL  282 (515)
T ss_dssp             EECHHHHHHHHHHHHCHHHHHHHHHHS---BCC----EEECTTCCCSS-CCCTTTTTTTSTTCCEECCCEEHHHHHHHHT
T ss_pred             ccCHHHHHhhcCCCcccccccccchHH---HCC----CCcCCcCcccC-cCHHHHHHhCCCCCCeEEEECchHHHHHhhC
Confidence            9999999998 997           43   346    68899999997 9999999999999999999999999999998


Q ss_pred             cccCCCcchhhhhhhhhcccCeEEEEecccceeeeeeccccccCC-ccccccccccCCeeEEcccccchhHHHHHHHHhh
Q 007076          328 MESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPG-VWGPFWSAMVPKFWLTEGGQSATGALLDYIIENH  406 (619)
Q Consensus       328 ~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~  406 (619)
                       | ..+              +++++++|||+++..+++++..++. .+..++ +. ++.|+.+++++++|.+++|+++.+
T Consensus       283 -g-~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~gg~~l~w~~~~~  344 (515)
T 3i8b_A          283 -G-MAV--------------GDVSISLGTSGVAAAISENPTYDLTGAVSGFA-DC-TGHYLPLACTINGSRILDAGRAAL  344 (515)
T ss_dssp             -T-CCT--------------TEEEEEESSSEEEEECBSSCCCCTTSCSEEEE-CS-SSSEEEEEEESCSTHHHHHHHHHH
T ss_pred             -C-CCC--------------CcEEEEechhhhhhcccCccccCCCCcEEeee-cC-CCCEEEeeecccHHHHHHHHHHHh
Confidence             5 443              6899999999999988888877653 333332 22 778999999999999999999865


Q ss_pred             hhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCC-CHHHHH
Q 007076          407 VASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS-SEKQLA  485 (619)
Q Consensus       407 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~-~~~~l~  485 (619)
                      .             . .|+++++++++.         +++++|++|+|||.|+|+|+| +++||.|+|++..| ++.|+.
T Consensus       345 ~-------------~-~~~~l~~~a~~~---------~~g~~gl~~lP~~~Ger~P~~-~~arg~~~Gl~~~~~~~~~l~  400 (515)
T 3i8b_A          345 G-------------V-DYDELAKLAFAS---------KPGANGITLVPYFDGERTPNR-PNATATFSGMTLANTTRENLA  400 (515)
T ss_dssp             T-------------C-CHHHHHHHHHHS---------CTTGGGCEEECCTTCBTTTTB-TTCCCEEESCCTTTCSHHHHH
T ss_pred             C-------------C-CHHHHHHHHHhC---------CCCCCCeEEecCCCCCcCCCC-cCcceEEecCCCCCCCHHHHH
Confidence            2             2 377888877653         358899999999999999977 99999999999999 999864


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccC
Q 007076          486 LLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS  565 (619)
Q Consensus       486 ~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~  565 (619)
                         ||++||+||++|++++.|++.|.++++|+++||++||++|+||+||++|+||+++...|++|+|||++|++++|.+.
T Consensus       401 ---RAvlEgia~~~r~~l~~l~~~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e~~alGAA~lA~~a~G~~~  477 (515)
T 3i8b_A          401 ---RAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDEYVAIGAARQAAWVLSGET  477 (515)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEECCCCHHHHHHHHHHHHHHHCCS
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEECchhcCHHHHHHHHHHhCCceEecCCcccHHHHHHHHHHHHcCCCC
Confidence               59999999999999999999888999999999999999999999999999999999999999999999999999988


Q ss_pred             CHHHHHHHhh-cCCeEEcCCCChhhHHHHHHHH
Q 007076          566 SLIEAMKAMN-AAGQVIHPSKDPKVKKYHDAKY  597 (619)
Q Consensus       566 ~~~~a~~~~~-~~~~~~~P~~~~~~~~~y~~~y  597 (619)
                      ++.+    +. ....+|+|.++++..+.|++.|
T Consensus       478 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  506 (515)
T 3i8b_A          478 EPPA----WQLTIDGVETGEPTEAVYEAYAKAR  506 (515)
T ss_dssp             SCCC----CCCCEEEEECCCCCHHHHHHHHHHH
T ss_pred             ChhH----hhhhccccCCCCccHHHHHHHHHHh
Confidence            7643    32 3356788966666666655554

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=5.3e-74  Score=628.04  Aligned_cols=448  Identities=14%  Similarity=0.137  Sum_probs=355.9

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (619)
                      |+|+||||+|||++|+++||++|++++..+.+++.++.+||+||||++||+++++++++++ +     .+|.+|||++| 
T Consensus         5 m~~~lgIDiGTts~Ka~l~d~~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~-~-----~~I~aIgis~~~   78 (482)
T 3h6e_A            5 TGATIVIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA-D-----HPVTTIVPVGHG   78 (482)
T ss_dssp             ---CEEEEECSSEEEEEEECTTSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT-T-----SCCCEEEEEECS
T ss_pred             hceEEEEEcCCCCeEEEEEECCCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH-h-----cCCCEEEEecCc
Confidence            4789999999999999999999999999999998777899999999999999999998886 3     57999999998 


Q ss_pred             ccc--ccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccchhHHhhhCCCCCCC--ChHHHHHHHHHhCchhHhcc
Q 007076          133 CSL--VDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPE--MQPPKLLWVKENLQESWSMV  208 (619)
Q Consensus       133 ~~~--vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~--~~~~kl~Wl~~~~pe~~~~~  208 (619)
                      +++  || +|+|+         +|+|+|+|.|+.++++++.+... .+++||++++++  ++++||+|+++|+||+|+++
T Consensus        79 ~~~v~~D-~G~pl---------~~ai~w~D~R~~~~~~~l~~~~~-~~~~tG~~~~~~~~~~~~kl~Wl~~~~Pe~~~~~  147 (482)
T 3h6e_A           79 AGIAALT-DGRLA---------FPPLDYEQSIPEAVMADYRSQRD-PFARTGSPALPDGLNIGSQLWWLDQLHPDVMANA  147 (482)
T ss_dssp             SCEEEEE-TTEEC---------SCCBCTTSCCCHHHHHHHHTTCC-CHHHHCCCCCSTTSSHHHHHHHHHHHSHHHHHSC
T ss_pred             CCEEEEC-CCCEe---------ccccccCCcccHHHHHHHHhhCh-HHHHhCCCCCCCchhHHHHHHHHHHcCchhhhcC
Confidence            554  49 99999         89999999999999999987653 388999999997  89999999999999999999


Q ss_pred             ceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccccCccccc
Q 007076          209 FRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF  288 (619)
Q Consensus       209 ~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l~~~v~~  288 (619)
                      + |++++|||.|+|||+.. ++.|+             .+|+|++||+++++|| ++|+.+||+ .+   ||    ++++
T Consensus       148 ~-~l~~~dyl~~~LTG~~~-td~s~-------------~As~t~l~d~~~~~W~-~ll~~~gi~-~~---LP----~v~~  203 (482)
T 3h6e_A          148 T-LLPWAQYWAWFLTGRAV-SEVTS-------------LGCHSDLWDPQDGDFS-PMAKRLGWA-AR---FA----PIVR  203 (482)
T ss_dssp             E-EEEHHHHHHHHTTSCCC-EEHHH-------------HTTTCSSEETTTTEEC-HHHHHTTCG-GG---BC----CEEC
T ss_pred             E-EEccHHHHHHHHhCCee-eecch-------------hhhccCCccCCcCcHH-HHHHHcCCH-Hh---CC----CCcC
Confidence            9 99999999999999874 34432             1457889999999999 599999998 32   46    6889


Q ss_pred             CCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhc---CcccCCCcchhhhhhhhhcccCe-EEEEecccceeeeee
Q 007076          289 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG---VMESVPESVSEAKENEEEAICHR-MVLVCGTSTCHMAVS  364 (619)
Q Consensus       289 ~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg---~~g~~~~g~~~~~~~~~g~~~~~-~~~~~GTs~~~~~~~  364 (619)
                      +++++|+ |++++|+++||++|+||++|++|++|+++|   + ++.++              ++ +++++|||.++....
T Consensus       204 ~~~~~G~-l~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~~g~-g~~~~--------------g~~~~~s~GT~~~~~~~~  267 (482)
T 3h6e_A          204 AGDTVGA-LLPAIAERTGLSPDVQVLAGLHDSNAALLAARGF-AEIAD--------------NEATVLSTGTWFIAMRLP  267 (482)
T ss_dssp             TTSEEEE-CCHHHHHHHTCCTTCEEECCEEHHHHHHHHHTTS-TTTTT--------------SSEEEEECSSSEEEEEEC
T ss_pred             CCceeee-eCHHHHHHhCCCCCCEEEEeCcHHHHHHhhhhcc-CCcCC--------------CCEEEEECCceeEEEEec
Confidence            9999997 999999999999999999999999999999   7 44433              33 678999998765555


Q ss_pred             c---c-ccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCC
Q 007076          365 R---N-KLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNS  440 (619)
Q Consensus       365 ~---~-~~~~~~~~~~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  440 (619)
                      +   + +..++.. ..++... ...|.+++...++|.+++|+++......++          .++..+.+++..      
T Consensus       268 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~----------~~~~~~~~a~~~------  329 (482)
T 3h6e_A          268 ATPVDTATLPEAR-DCLVNVD-VHGRPVPSARFMGGREIETLIEIDTRRVDI----------KPDQPALLAAVP------  329 (482)
T ss_dssp             SSCCCGGGCCGGG-TEEEEEC-TTSCEEEEEEECHHHHHHHHHCSGGGCTTC----------GGGHHHHHHTHH------
T ss_pred             CccCCccccchhh-ceeeccc-cccccccchhhhhHHHHHHHHHhccccccc----------ccchhhHHHhcc------
Confidence            5   3 3233311 1111111 223567777889999999997543210000          011222222221      


Q ss_pred             CCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCcCEEEE
Q 007076          441 PFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQG--IAYGTRHIVEHCNAHGHKIDTLLA  518 (619)
Q Consensus       441 p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEg--iaf~~~~~l~~l~~~g~~~~~I~~  518 (619)
                         +++++|++|+|||+|+|+|+||+  ||+|+|++.    .|   ++||++|+  +||++|++++.|++.    ++|++
T Consensus       330 ---~~g~~Gl~flP~l~Ger~P~~d~--rG~~~Gl~~----~~---l~RA~lE~~Gia~~~r~~l~~~~~~----~~i~~  393 (482)
T 3h6e_A          330 ---EVLRHGRMILPTLMRGFGPYPHG--RFAWINRPE----DW---FERRAAACLYAALVADTALDLIGST----GRILV  393 (482)
T ss_dssp             ---HHHHTTCEEESCSSTTCSSCTTC--CCEEESCCS----SH---HHHHHHHHHHHHHHHHHHHHHTTCC----SEEEE
T ss_pred             ---ccCCCCeEEecCCCCCCCCCCCC--ceEEeCCCH----HH---HHHHHHHHHhHHHHHHHHHHHhcCC----CeEEE
Confidence               24789999999999999999986  999999999    35   46799995  999999999999753    68999


Q ss_pred             ecCCcCCHHHHHHHHhh-hCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEcCCCChhhHHHHHHHH
Q 007076          519 CGGLAKNPLFLQQHADI-IGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKY  597 (619)
Q Consensus       519 ~GG~a~s~~~~Qi~Adv-lg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~~y~~~y  597 (619)
                      +||++||++|+||+||| ||+||+++...|++|+|||++|+++.-.            .....+.|..+..-+..+++++
T Consensus       394 ~GG~a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGAA~lA~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~  461 (482)
T 3h6e_A          394 EGRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPGLRP------------QGELVRIEPLDTGSWADLDTYR  461 (482)
T ss_dssp             ESGGGGCHHHHHHHHHHSTTSEEEEESSCCCTTGGGHHHHCTTCCC------------SSCEEECCCCCC----CHHHHH
T ss_pred             eCCcccCHHHHHHHhhhcCCCeEEEcCCCchHHHHHHHHhCccccc------------ccccCcccccccccchHHHHHH
Confidence            99999999999999999 9999999999999999999999987321            1245677754412223455556


Q ss_pred             HHHHHHH
Q 007076          598 LIFRELF  604 (619)
Q Consensus       598 ~~y~~l~  604 (619)
                      ++|++..
T Consensus       462 ~~w~~~~  468 (482)
T 3h6e_A          462 NRWQAEV  468 (482)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666544

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=100.00  E-value=1.2e-72  Score=623.00  Aligned_cols=461  Identities=16%  Similarity=0.174  Sum_probs=367.5

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecc-----cccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ-----IWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG  126 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~-----~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~a  126 (619)
                      |+++++||||+|||++|++|+|.+|+++...+.++.     ..+.+||.||||++||+++.++++++...    ..+|.+
T Consensus         1 m~~~~~lgiDiGtts~k~~l~d~~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~----~~~i~~   76 (489)
T 2uyt_A            1 MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA----GIAIDS   76 (489)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT----TCCCCE
T ss_pred             CCcceEEEEEecCCCceEEEEEecCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC----CCCceE
Confidence            667889999999999999999999998877665543     12478999999999999999999988653    357999


Q ss_pred             EEEcCc-cc--cccCCCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhC
Q 007076          127 VGFAAT-CS--LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENL  201 (619)
Q Consensus       127 Igis~~-~~--~vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~  201 (619)
                      |||++| ++  +||++|+|+         +|+|.|+|.|+.++++++.+..  ++++++||+++++.++++||+|+++|+
T Consensus        77 Igis~q~~~~v~~D~~G~~l---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~  147 (489)
T 2uyt_A           77 IGIDTWGVDFVLLDQQGQRV---------GLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQ  147 (489)
T ss_dssp             EEEEECSSCEEEECTTSCEE---------SCCBCTTCGGGTTHHHHHHHHHCHHHHHHHHCCCCCTTSHHHHHHHHHHHC
T ss_pred             EEEecCcccEEEECCCCCCc---------cCCccccCCccHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHhcC
Confidence            999998 55  459999999         7899999999999999997653  578999999999999999999999999


Q ss_pred             chhHhccceeeechhHHHhhhcCCcccccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCccccccccc
Q 007076          202 QESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK  281 (619)
Q Consensus       202 pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~  281 (619)
                      ||+|+++.++++++|||.|+|||+.. ++.|+              +|+|++||+++++||+++|+.+||++.+   || 
T Consensus       148 P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP-  208 (489)
T 2uyt_A          148 PELIPHIAHALLMPDYFSYRLTGKMN-WEYTN--------------ATTTQLVNINSDDWDESLLAWSGANKAW---FG-  208 (489)
T ss_dssp             GGGGGGCCEEEEHHHHHHHHHHSCCC-CBHHH--------------HGGGTCEETTTTEECHHHHHHHTCCGGG---SC-
T ss_pred             chHHHHhhhccCcHHHHHHHHhCCcc-ceehh--------------hhhhcccccCcCccCHHHHHHcCCCHHH---CC-
Confidence            99999999999999999999999975 34443              5678899999999999999999999754   46 


Q ss_pred             cCcccccCCCccCCCccHHHHHHcCCCCCCcEEE-ccchHHhhhhcCcccCCCcchhhhhhhhhcccCeEEEEeccccee
Q 007076          282 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCH  360 (619)
Q Consensus       282 l~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~g~~~~~~~~~~GTs~~~  360 (619)
                         +++++++++|. ++.+    .|  +|+||++ |+||++|+++|+ ++..              ++++++++|||+++
T Consensus       209 ---~i~~~~~~~G~-~~~~----~~--~g~pV~~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~  263 (489)
T 2uyt_A          209 ---RPTHPGNVIGH-WICP----QG--NEIPVVAVASHDTASAVIAS-PLNG--------------SRAAYLSSGTWSLM  263 (489)
T ss_dssp             ---CCBCTTCEEEE-EECT----TC--CEEEEECCCCBHHHHHHHHS-CCCS--------------TTEEEEEESSSEEE
T ss_pred             ---CccCCCcceee-eecc----cC--CCCcEEEECchHHHHHHhcC-CCCC--------------CCcEEEEEchHhhc
Confidence               68899999997 7532    23  7899997 889999999998 5443              36899999999998


Q ss_pred             eeeeccccccCC-ccc-cccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhcc
Q 007076          361 MAVSRNKLFIPG-VWG-PFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHER  438 (619)
Q Consensus       361 ~~~~~~~~~~~~-~~~-~~~~~~~~~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  438 (619)
                      ...++++..++. ... .++++..++.|..++.+.  |   .|+++.+....         +.+.|+.+.+.+ +     
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g---~W~~~~~~~~~---------~~~~~~~l~~~a-~-----  323 (489)
T 2uyt_A          264 GFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM--G---LWLLQRVLQER---------QINDLPALIAAT-Q-----  323 (489)
T ss_dssp             EEEESSCCCSHHHHHHTCEEECCGGGCEEEEEEEC--T---THHHHHHHHHT---------TCCCHHHHHHHH-T-----
T ss_pred             ccccCCCccCHHHHhhcceeecCCCCeEEEehhHh--H---HHHHHHhhccc---------chhhHHHHHHHh-c-----
Confidence            888887654431 211 233345578898887765  2   59888654211         123455554432 1     


Q ss_pred             CCCCccCCCCceEEcccCCCCCCCCCCCC-----CcEeEEcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q 007076          439 NSPFVAALTEDIHVLPDFHGNRSPIADPK-----SKGIICGMT--LDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HG  510 (619)
Q Consensus       439 ~~p~~~~g~~gl~flP~l~G~r~P~~d~~-----a~g~~~Gl~--~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~-~g  510 (619)
                       .   ++++++ +|+|    ++.|||+|+     .+|.|.|+.  ..|++.|+.   ||++||+||++|++++.|++ .|
T Consensus       324 -~---~~~~~~-l~~p----~~~~~~~p~~~~~~~~g~~~g~~~~~~~t~~~l~---RAvlEgia~~~r~~~~~l~~~~g  391 (489)
T 2uyt_A          324 -A---LPACRF-IINP----NDDRFINPDEMCSEIQAACREMAQPIPESDAELA---RCIFDSLALLYADVLHELAQLRG  391 (489)
T ss_dssp             -T---SCSSSS-CCCT----TSGGGSSCSCHHHHHHHHHHHTTCCCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -c---CCCcCe-eECC----CCCccCChhhhHHHHHHHHHhcCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhC
Confidence             1   245554 4788    577888887     488998884  788888864   69999999999999999987 57


Q ss_pred             CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccC---CHHHHHHHhhcCCeEEcCCCCh
Q 007076          511 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS---SLIEAMKAMNAAGQVIHPSKDP  587 (619)
Q Consensus       511 ~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~---~~~~a~~~~~~~~~~~~P~~~~  587 (619)
                      .++++|+++||++||++|+||+||++|+||+++. .|++++|||++|+.+.+...   +++++.+.+.. .++|+|  |+
T Consensus       392 ~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~-~e~~alGaa~~A~~a~~~~~~~~~~~~~~~~~~~-~~~~~P--~~  467 (489)
T 2uyt_A          392 EDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP-VEASTLGNIGIQLMTLDELNNVDDFRQVVSTTAN-LTTFTP--NP  467 (489)
T ss_dssp             CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC-TTHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHSC-CEEECC--CT
T ss_pred             CCCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC-ccHhHHHHHHHHHHHcCccccHHHHHHHHHhhCC-CeEECC--Cc
Confidence            8899999999999999999999999999998876 79999999877777765544   44455555544 588999  89


Q ss_pred             hhH-HHHHHHHHHHHHHHH
Q 007076          588 KVK-KYHDAKYLIFRELFE  605 (619)
Q Consensus       588 ~~~-~~y~~~y~~y~~l~~  605 (619)
                      +++ +.|+++|++|++|.+
T Consensus       468 ~~~~~~Y~~~~~~y~~~~~  486 (489)
T 2uyt_A          468 DSEIAHYVALIHSTRQTKE  486 (489)
T ss_dssp             TSHHHHHHHHTTC------
T ss_pred             chHHHHHHHHHHHhhchhh
Confidence            999 999999999998764

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=99.61  E-value=2.8e-15  Score=151.68  Aligned_cols=128  Identities=15%  Similarity=0.114  Sum_probs=95.2

Q ss_pred             ccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEe
Q 007076          392 QSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGI  471 (619)
Q Consensus       392 ~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~  471 (619)
                      ...+|..++|+.+.+.             .+ ++++++++.+.             .    .|+..|+|++.   -+++.
T Consensus       128 a~GtG~~le~~a~~lg-------------~~-~~el~~la~~~-------------~----~p~~~~~~c~v---fa~s~  173 (270)
T 1hux_A          128 AAGTGRFLDVMANILE-------------VK-VSDLAELGAKS-------------T----KRVAISSTCTV---FAESE  173 (270)
T ss_dssp             CTTSHHHHHHHHHHHT-------------CC-TTTHHHHHTTC-------------C----SCCCCCCCSHH---HHHHH
T ss_pred             chhhHHHHHHHHHHhC-------------CC-HHHHHHHHhhC-------------C----CCCCcccccch---hHhHH
Confidence            3346789999987652             22 45566554321             1    46667777763   25666


Q ss_pred             EEcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCC-cc
Q 007076          472 ICGMT-LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SV  549 (619)
Q Consensus       472 ~~Gl~-~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-~~  549 (619)
                      ++++. ..++++|++   |+++|++++++..+   ++..++ .++|+++||+++|+.|+|+++|++|+||.+++..+ .+
T Consensus       174 v~~l~~~g~~~~di~---~av~e~Va~~i~~~---~~~~~~-~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~  246 (270)
T 1hux_A          174 VISQLSKGTDKIDII---AGIHRSVASRVIGL---ANRVGI-VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNG  246 (270)
T ss_dssp             HHHHHHTTCCHHHHH---HHHHHHHHHHHHHH---HHTTCC-CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHH
T ss_pred             HHHHhhCCCCHHHHH---HHHHHHHHHHHHHH---HhcCCC-CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHh
Confidence            77766 677888865   59999999998544   444333 47899999999999999999999999999988888 59


Q ss_pred             chHHHHHHHhh
Q 007076          550 LLGAAILGAVA  560 (619)
Q Consensus       550 alGAAllA~~~  560 (619)
                      |+|||++|+..
T Consensus       247 AlGAAl~A~~~  257 (270)
T 1hux_A          247 ALGAALYAYKK  257 (270)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999764

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=98.64  E-value=8.1e-08  Score=99.33  Aligned_cols=91  Identities=20%  Similarity=0.347  Sum_probs=74.8

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      +|+||||+|+|++|++++|.+|+++...+.+++       .+.+++++++.+.+++++++++.+....+|.+|||+. +|
T Consensus         6 ~~~lgiDiggt~~~~~l~d~~g~il~~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~igi~~-pG   77 (326)
T 2qm1_A            6 KKIIGIDLGGTTIKFAILTTDGVVQQKWSIETN-------ILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGT-PG   77 (326)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC-------CTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE-SS
T ss_pred             cEEEEEEECCCEEEEEEECCCCCEEEEEEEcCC-------CCCCHHHHHHHHHHHHHHHHHHcCCCccceeEEEEec-cc
Confidence            689999999999999999999999998877765       2467889999999999999988766567899999976 88


Q ss_pred             cccCC-CCeeeecCCCCCCccceeeccc
Q 007076          135 LVDAD-GSPVSVSWNGDSRRNIIVWMDH  161 (619)
Q Consensus       135 ~vd~~-G~pl~~~~~~~~~~p~i~W~D~  161 (619)
                      +||.+ |..+.        .|.+.|.+.
T Consensus        78 ~vd~~~g~v~~--------~~~l~w~~~   97 (326)
T 2qm1_A           78 SVDIEKGTVVG--------AYNLNWTTV   97 (326)
T ss_dssp             EEETTTTEEEC--------BGGGTBCSC
T ss_pred             ceeCCCCEEEe--------cCCCCccCC
Confidence            89765 76553        455678664

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=98.54  E-value=1.3e-05  Score=80.33  Aligned_cols=73  Identities=15%  Similarity=0.270  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCC-CCccchHHHHHH
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILG  557 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~-~e~~alGAAllA  557 (619)
                      +.++..+++.+++.++..++..++   +.+ .++.|+++||+++++.+.+++++.|+.||.++.. .+++|+|||+.|
T Consensus       199 ~~~~~~~~~~~~~~i~~~i~~~l~---~~~-~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a  272 (272)
T 3h1q_A          199 HREIMRVVRPVIEKMALIVKEVIK---NYD-QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALFG  272 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---TSC-SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---hcC-CCCEEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence            455555666777777765555443   332 3678999999999999999999999999987664 458899999753

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=98.50  E-value=2.6e-07  Score=95.52  Aligned_cols=88  Identities=30%  Similarity=0.467  Sum_probs=70.8

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      +|+||||+|+|++|++++|.+|+++.+.+.++         +.+++++++.+.+.++++.++     .+|.+|||+. +|
T Consensus         2 ~~~lgiDiGgt~i~~~l~d~~G~i~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-----~~i~gigi~~-pG   66 (321)
T 3vgl_A            2 GLTIGVDIGGTKIAAGVVDEEGRILSTFKVAT---------PPTAEGIVDAICAAVAGASEG-----HDVEAVGIGA-AG   66 (321)
T ss_dssp             CEEEEEEECSSEEEEEEECTTCCBCCCEEEEC---------CSSHHHHHHHHHHHHHHHHTT-----CCEEEEEEEE-SS
T ss_pred             cEEEEEEECCCEEEEEEECCCCCEEEEEEeeC---------CCCHHHHHHHHHHHHHHHHhh-----cCceEEEEec-cc
Confidence            58999999999999999999999998766655         357899999999999988653     4799999976 88


Q ss_pred             cccCC-CCeeeecCCCCCCccceeecccccHH
Q 007076          135 LVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVK  165 (619)
Q Consensus       135 ~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~~~  165 (619)
                      +||.+ |....        .|.+.|.+..-.+
T Consensus        67 ~vd~~~g~v~~--------~~~l~w~~~~l~~   90 (321)
T 3vgl_A           67 YVDDKRATVLF--------APNIDWRHEPLKD   90 (321)
T ss_dssp             EECTTSSCEEE--------CSSSCCEEECHHH
T ss_pred             cEeCCCCEEEe--------CCCCCCcCCCHHH
Confidence            99876 66554        4666887765443

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.48  E-value=5e-07  Score=97.20  Aligned_cols=92  Identities=15%  Similarity=0.193  Sum_probs=76.0

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|+||||+|+|++|++++|.+|+++.+.+.+++        .++++++++.+.+.+++++++.+....+|.+|||+. +|
T Consensus       108 ~~~lGIDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~-pG  178 (429)
T 1z05_A          108 WQFLSMRLGRGYLTIALHELGGEVLIDTKIDIH--------EIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITL-PG  178 (429)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSCEEEEEEEECC--------CCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEE-SS
T ss_pred             CEEEEEEECCCEEEEEEECCCCCEEEEEEEcCC--------CCCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEEec-cC
Confidence            589999999999999999999999998777665        357999999999999999988766667899999976 88


Q ss_pred             cccCC-CCeeeecCCCCCCccceeeccccc
Q 007076          135 LVDAD-GSPVSVSWNGDSRRNIIVWMDHRA  163 (619)
Q Consensus       135 ~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~  163 (619)
                      +||.+ |..+.        .|.+.|.+..-
T Consensus       179 ~vd~~~g~v~~--------~~~l~w~~~~l  200 (429)
T 1z05_A          179 LVNSEQGIVLQ--------MPHYNVKNLAL  200 (429)
T ss_dssp             EEETTTTEEEE--------CSSSBCSSBCH
T ss_pred             cEeCCCCeEee--------cCCCCCCCCCH
Confidence            99865 76653        46667877543

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=98.45  E-value=4e-07  Score=96.34  Aligned_cols=92  Identities=17%  Similarity=0.267  Sum_probs=74.4

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|+||||+|+|++|++++|.+|+++...+.+++       .+++++++++.+.+.+++++++.+....+|.+|||+. +|
T Consensus        87 ~~~lGIDiGgt~i~~~l~d~~G~vl~~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~-pG  158 (380)
T 2hoe_A           87 AYVLGIEVTRDEIAACLIDASMNILAHEAHPLP-------SQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAA-PG  158 (380)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE-SS
T ss_pred             CeEEEEEECCCEEEEEEECCCCCEEEEEEEccC-------CCCCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEEEe-ec
Confidence            589999999999999999999999988877765       2468999999999999999887654557899999976 88


Q ss_pred             cccCC-CCeeeecCCCCCCccceeecccc
Q 007076          135 LVDAD-GSPVSVSWNGDSRRNIIVWMDHR  162 (619)
Q Consensus       135 ~vd~~-G~pl~~~~~~~~~~p~i~W~D~R  162 (619)
                      +||.+ |..+.        .|.+.|.+..
T Consensus       159 ~vd~~~g~v~~--------~~~l~w~~~~  179 (380)
T 2hoe_A          159 PIDTERGIIID--------PRNFPLSQIP  179 (380)
T ss_dssp             CEETTTTEECC--------CSSCTTBTSC
T ss_pred             cEECCCCEEec--------cCCCCCcCCC
Confidence            89764 76553        3555687643

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=98.44  E-value=7.3e-07  Score=91.33  Aligned_cols=81  Identities=19%  Similarity=0.330  Sum_probs=60.8

Q ss_pred             CCCCC--CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCE--E
Q 007076           50 PARSR--SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEV--K  125 (619)
Q Consensus        50 ~~m~~--~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I--~  125 (619)
                      ++|++  +|+||||+|+|++|++++|.+|+++.+.+.+..     . ..++++++++.+.+++++++++.+....+|  .
T Consensus         4 ~~m~~~~~~~lGiDiGgT~i~~~l~d~~G~il~~~~~~~~-----~-~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~   77 (305)
T 1zc6_A            4 QTMNPSIRYLIGVDGGGTGTRIRLHASDGTPLAMAEGGAS-----A-LSQGIAKSWQAVLSTLEAAFQQAGLPAAPASAC   77 (305)
T ss_dssp             ----CCCCEEEEEEECSSCEEEEEEETTCCEEEEEEESCC-----C-GGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGE
T ss_pred             hhhcccCCEEEEEEcCccceEEEEEcCCCCEEEEEeCCCC-----C-cccCHHHHHHHHHHHHHHHHHhcCCChhhhccc
Confidence            34553  699999999999999999999999987655321     0 246899999999999999998876666676  7


Q ss_pred             EEEEcCcccccc
Q 007076          126 GVGFAATCSLVD  137 (619)
Q Consensus       126 aIgis~~~~~vd  137 (619)
                      +|||+. +|++|
T Consensus        78 ~igig~-pG~v~   88 (305)
T 1zc6_A           78 AIGLGL-SGVHN   88 (305)
T ss_dssp             EEEEEE-SCCCT
T ss_pred             eEEEEe-cCCCc
Confidence            788764 55443

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=98.43  E-value=4.5e-07  Score=96.84  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=74.6

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      ..|+||||+|+|++|++++|.+|+++.+.+.+++        +++++++++.+.+++++++++.+....+|.+|||+. +
T Consensus        84 ~~~~lgiDiG~t~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi~~-p  154 (406)
T 1z6r_A           84 AWHYLSLRISRGEIFLALRDLSSKLVVEESQELA--------LKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITL-P  154 (406)
T ss_dssp             TCEEEEEEEETTEEEEEEEETTCCEEEEEEEECC--------SSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEE-S
T ss_pred             ccEEEEEEEcCCEEEEEEEcCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEEEe-e
Confidence            3589999999999999999999999988777663        467888999999999999887665567899999976 8


Q ss_pred             ccccCC-CCeeeecCCCCCCccce-eecccc
Q 007076          134 SLVDAD-GSPVSVSWNGDSRRNII-VWMDHR  162 (619)
Q Consensus       134 ~~vd~~-G~pl~~~~~~~~~~p~i-~W~D~R  162 (619)
                      |+||.+ |..+.        .|.+ .|.+..
T Consensus       155 G~vd~~~g~v~~--------~~~l~~w~~~~  177 (406)
T 1z6r_A          155 GIIDTENGIVHR--------MPFYEDVKEMP  177 (406)
T ss_dssp             SEEETTTTEEEE--------CTTCTTCSSBC
T ss_pred             cCEeCCCCEEec--------CCCCCCccCCC
Confidence            889766 76653        4555 687643

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=98.40  E-value=6.7e-07  Score=93.26  Aligned_cols=78  Identities=21%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCC-CEEEEEEc
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGE-EVKGVGFA  130 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~-~I~aIgis  130 (619)
                      ||++|+||||+|+|++|++++|.+|+++.+.+.+..     .+.+++++++++.+.+++++++++.+.... +|.+|||+
T Consensus         3 ~M~~~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~   77 (347)
T 2ch5_A            3 FMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLST-----NHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLS   77 (347)
T ss_dssp             SSSCEEEEEEECTTCEEEEEEETTSCEEEEEEECCC-----CHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEE
T ss_pred             ccceEEEEEEcCccceEEEEEeCCCCEEEEEeCCCC-----CcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEe
Confidence            444599999999999999999999999987765321     123468999999999999999987666555 79999997


Q ss_pred             Ccccc
Q 007076          131 ATCSL  135 (619)
Q Consensus       131 ~~~~~  135 (619)
                      . +|+
T Consensus        78 ~-pG~   81 (347)
T 2ch5_A           78 L-SGG   81 (347)
T ss_dssp             E-TTT
T ss_pred             c-cCC
Confidence            5 443

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=98.39  E-value=5.6e-07  Score=93.79  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=64.3

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|+||||+|+|++|++++|.+|+++.+.+.+++         ++++++++.+.+.+++++++.+....+|.+|||+. +|
T Consensus        30 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~-pG   99 (343)
T 2yhw_A           30 LSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNP---------KTYEERINLILQMCVEAAAEAVKLNCRILGVGIST-GG   99 (343)
T ss_dssp             EEEEEEEECSSEEEEEEEETTSCEEEEEEEECC---------SSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE-SS
T ss_pred             cEEEEEEECCCEEEEEEECCCCcEEEEEEEcCC---------CCHHHHHHHHHHHHHHHHHhcccccCceEEEEEec-cc
Confidence            589999999999999999999999987766543         46888999999999988776433346799999976 88


Q ss_pred             cccCC-CCee
Q 007076          135 LVDAD-GSPV  143 (619)
Q Consensus       135 ~vd~~-G~pl  143 (619)
                      +||.+ |..+
T Consensus       100 ~vd~~~g~v~  109 (343)
T 2yhw_A          100 RVNPREGIVL  109 (343)
T ss_dssp             EEETTTTEEE
T ss_pred             CEeCCCCEEE
Confidence            89875 7665

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=98.36  E-value=8.1e-07  Score=91.73  Aligned_cols=90  Identities=21%  Similarity=0.200  Sum_probs=71.9

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|+||||+|+|++|++++|.+|+++...+.+++       ...+++++++.+.+.++++++.    ..+|.+|||+. +|
T Consensus        19 ~~~lgidiggt~i~~~l~d~~g~il~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~----~~~i~gigi~~-pG   86 (321)
T 3r8e_A           19 GMILGIDVGGTSVKFGLVTPEGEIQNATRFMTA-------DWVNGIGFVESMKLEIGNFLKQ----YPIVKGVGIGW-PG   86 (321)
T ss_dssp             CCEEEEECCSSEEEEEEECTTCCEEEEEEEEHH-------HHHTTTCHHHHHHHHHHHHHHH----CTTCCEEEEEE-SS
T ss_pred             cEEEEEEECCCEEEEEEEcCCCcEEEEEEEeCC-------CCCCHHHHHHHHHHHHHHHHhc----cCCeeEEEEEe-cc
Confidence            579999999999999999999999998887776       2457888999999999888762    46789999976 88


Q ss_pred             cccCC-CCeeeecCCCCCCcccee-ecccccH
Q 007076          135 LVDAD-GSPVSVSWNGDSRRNIIV-WMDHRAV  164 (619)
Q Consensus       135 ~vd~~-G~pl~~~~~~~~~~p~i~-W~D~R~~  164 (619)
                      +||.+ |..+.        .|.+. |.+....
T Consensus        87 ~vd~~~g~v~~--------~~~l~~w~~~~l~  110 (321)
T 3r8e_A           87 LVSLDRTKVIL--------LPNIPSVVNVPIV  110 (321)
T ss_dssp             EECTTSCCEEE--------BTTBCCCCSCCHH
T ss_pred             cEECCCCEEEe--------CCCCccccCCCHH
Confidence            99854 77764        45555 8775433

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=98.33  E-value=2e-06  Score=89.04  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=62.8

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      |+||||+|+|++|++++|.+|+++.+.+.+++        ..+++++++.+.+.++++..+.    ..+.+|||+. +|+
T Consensus        25 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gigi~~-pG~   91 (327)
T 4db3_A           25 MYYGFDVGGTKIEFGAFNEKLERVATERVPTP--------TDDYPLLLETIAGLVAKYDQEF----ACEGKIGLGL-PGM   91 (327)
T ss_dssp             CEEEEEECSSEEEEEEECTTCCEEEEEEEECC--------TTCHHHHHHHHHHHHHHHHHHH----TSCCEEEEEE-SEE
T ss_pred             EEEEEEECCCEEEEEEEeCCCcEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHHhc----CCccEEEEEe-ecc
Confidence            58999999999999999999999998877765        3488999999999999988764    2477888875 889


Q ss_pred             ccCC-CCee
Q 007076          136 VDAD-GSPV  143 (619)
Q Consensus       136 vd~~-G~pl  143 (619)
                      ||.+ |...
T Consensus        92 vd~~~g~v~  100 (327)
T 4db3_A           92 EDADDATVL  100 (327)
T ss_dssp             ECTTTCCEE
T ss_pred             EeCCCCEEE
Confidence            9864 7765

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=98.29  E-value=6.7e-07  Score=91.88  Aligned_cols=86  Identities=21%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|+||||||+|++|++++|.+|+++.+.+.+++        +.+++.+++.+.+.+++++++.+   .+|.+|||+. +|
T Consensus         7 ~~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~---~~i~gigi~~-pG   74 (310)
T 3htv_A            7 NVVAGVDMGATHIRFCLRTAEGETLHCEKKRTA--------EVIAPGLVSGIGEMIDEQLRRFN---ARCHGLVMGF-PA   74 (310)
T ss_dssp             EEEEEEEECSSEEEEEEEETTSCEEEEEEEEHH--------HHHTTCHHHHHHHHHHHHHHHHT---EEEEEEEEEE-SS
T ss_pred             CEEEEEEeCCCEEEEEEECCCCCEEEEEEecCc--------cccHHHHHHHHHHHHHHHHHhcC---CCeeEEEEec-cc
Confidence            479999999999999999999999998777665        33456788888888888776542   3689999976 88


Q ss_pred             cccCC-CCeeeecCCCCCCccceeecc
Q 007076          135 LVDAD-GSPVSVSWNGDSRRNIIVWMD  160 (619)
Q Consensus       135 ~vd~~-G~pl~~~~~~~~~~p~i~W~D  160 (619)
                      +||.+ |..+.        .|.+.|.+
T Consensus        75 ~vd~~~g~v~~--------~~~l~~~~   93 (310)
T 3htv_A           75 LVSKDKRTIIS--------TPNLPLTA   93 (310)
T ss_dssp             CBCTTSSCBCS--------CCSSSCCH
T ss_pred             cEeCCCCEEEe--------CCCCCCcc
Confidence            99865 66653        45667765

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=98.19  E-value=1.3e-06  Score=89.21  Aligned_cols=99  Identities=23%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      |+||||+|+|++|++++|.+|+++.+.+.+++     .+.+++++++++.+.+.+++++++.      +.+|||+. +|+
T Consensus         3 ~~lgiDiGgt~~~~~l~d~~g~i~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~------~~~igi~~-~G~   70 (299)
T 2e2o_A            3 IIVGVDAGGTKTKAVAYDCEGNFIGEGSSGPG-----NYHNVGLTRAIENIKEAVKIAAKGE------ADVVGMGV-AGL   70 (299)
T ss_dssp             CEEEEEECSSCEEEEEECTTSCEEEEEEESCC-----CHHHHCHHHHHHHHHHHHHHHHTSC------CSEEEEEE-TTC
T ss_pred             EEEEEEeCCCcEEEEEEcCCCCEEEEEeCCCC-----CcccCCHHHHHHHHHHHHHHHHhcC------CCEEEEEc-CCC
Confidence            79999999999999999999999988766654     2235789999999999999887541      55677654 455


Q ss_pred             ccCC-CC-eeeecCCCCCCccceeecccccHHHHH
Q 007076          136 VDAD-GS-PVSVSWNGDSRRNIIVWMDHRAVKQAE  168 (619)
Q Consensus       136 vd~~-G~-pl~~~~~~~~~~p~i~W~D~R~~~~~~  168 (619)
                       |.+ |. ++...... ...|++.++|.++....+
T Consensus        71 -~~~~~~~~l~~~l~~-~~~pv~v~ND~~aaa~~e  103 (299)
T 2e2o_A           71 -DSKFDWENFTPLASL-IAPKVIIQHDGVIALFAE  103 (299)
T ss_dssp             -CSHHHHHHHHHHHTT-SSSEEEEEEHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHh-CCCCEEEeCcHHHHHhhc
Confidence             432 21 11000001 115788888888766543

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=98.07  E-value=8.8e-06  Score=81.55  Aligned_cols=81  Identities=20%  Similarity=0.346  Sum_probs=56.9

Q ss_pred             CCCeEEEEEcCCcceEEEEEcCC-CCEEEE-EEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           53 SRSVFLGVDVGTGSARAGLFDES-GKLLGS-ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        53 ~~~~~lgIDiGTTsiKa~l~d~~-g~il~~-~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      +..|+||||+|.|++|++++|.+ |+++.. .+.+++       ...+++++++.+.+.++++.++... ...+.+|||+
T Consensus        10 ~~~~~lgidiggt~i~~~l~dl~~g~i~~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~igi~   81 (267)
T 1woq_A           10 KNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP-------QPATPESVAEAVALVVAELSARPEA-PAAGSPVGVT   81 (267)
T ss_dssp             -CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHTSTTC-CCTTCCEEEE
T ss_pred             CCCEEEEEEECCCEEEEEEEECCCCeEEEEEEecCCC-------ccCCHHHHHHHHHHHHHHHHHhccc-cCccceEEEE
Confidence            33479999999999999999976 777743 334443       2357888999999999888764321 1334567776


Q ss_pred             CccccccCCCCee
Q 007076          131 ATCSLVDADGSPV  143 (619)
Q Consensus       131 ~~~~~vd~~G~pl  143 (619)
                      . +|+|| +|..+
T Consensus        82 ~-pG~v~-~g~v~   92 (267)
T 1woq_A           82 F-PGIIQ-HGVVH   92 (267)
T ss_dssp             E-SSCEE-TTEEC
T ss_pred             c-cceEc-CCEEE
Confidence            5 78887 67654

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=98.06  E-value=1.1e-05  Score=82.34  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=60.1

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      |+||||||+|++|++++|.+|+++.+.+.+++        ..+++++++.+.+.+    ++    ..+|.+|||+. +|+
T Consensus         5 ~~lgiDiGgt~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~~----~~----~~~i~gigi~~-pG~   67 (297)
T 4htl_A            5 KIAAFDIGGTALKMGVVLPHGEIILTKSAEIS--------GSDGDQILAEMKVFL----AE----NTDVTGIAVSA-PGY   67 (297)
T ss_dssp             CEEEEEECSSEEEEEEECTTSCEEEEEEEECS--------TTCHHHHHHHHHHHH----HT----CTTCCEEEEEE-SSE
T ss_pred             EEEEEEeCCCeEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHH----hh----cCCeeEEEEec-Ccc
Confidence            59999999999999999999999998777754        345566666554443    32    35789999976 889


Q ss_pred             ccCC-CCeeeecCCCCCCccce-eecccc
Q 007076          136 VDAD-GSPVSVSWNGDSRRNII-VWMDHR  162 (619)
Q Consensus       136 vd~~-G~pl~~~~~~~~~~p~i-~W~D~R  162 (619)
                      ||.+ |..+.        .|.+ .|.+..
T Consensus        68 vd~~~g~v~~--------~~~l~~w~~~~   88 (297)
T 4htl_A           68 VNPKTGLITM--------GGAIRRFDNFN   88 (297)
T ss_dssp             ECTTTCEEEE--------CTTCGGGTTEE
T ss_pred             eeCCCCEEEe--------CCCCCCccCCC
Confidence            9865 77663        3444 477654

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=98.01  E-value=6.7e-06  Score=84.01  Aligned_cols=75  Identities=24%  Similarity=0.363  Sum_probs=58.6

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      |+||||+|+|++|++++|.++ ++...+.+++        ..+++++++.+.+.+++++++.   ..+|.+|||+. +|+
T Consensus         2 ~~lgiDiGgt~i~~~l~d~~~-~l~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~~-pG~   68 (302)
T 3vov_A            2 KVVGLDLGGTKIAAGVFDGKR-LLSKVVVPTP--------KEGGERVAEALAEAAERAEREA---GVRGEAIGLGT-PGP   68 (302)
T ss_dssp             CEEEEEECSSEEEEEEECSSS-BSCCEEEECC--------SSCHHHHHHHHHHHHHHHHHHH---TCCCSSEEEEE-SSC
T ss_pred             EEEEEEEcCCEEEEEEEeCCC-cEEEEEEcCC--------CCChHHHHHHHHHHHHHHHhhc---cCCceEEEEEe-ccc
Confidence            699999999999999999884 5565566654        3445889999999999887754   35788999975 889


Q ss_pred             ccCC-CCee
Q 007076          136 VDAD-GSPV  143 (619)
Q Consensus       136 vd~~-G~pl  143 (619)
                      ||.+ |...
T Consensus        69 vd~~~g~v~   77 (302)
T 3vov_A           69 LDFRRGVIR   77 (302)
T ss_dssp             EETTTTEEC
T ss_pred             EeCCCCEEE
Confidence            9865 6544

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=97.86  E-value=5.1e-05  Score=78.22  Aligned_cols=76  Identities=21%  Similarity=0.377  Sum_probs=60.7

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|+||||+|.|++|++++|.+|+++.+.+.+++        ..+++++++.+.+.++++..+.    ..+.+|||+. +|
T Consensus        24 ~~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~i~~igi~~-pG   90 (327)
T 2ap1_A           24 AMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTP--------HTSYSAFLDAVCELVEEADQRF----GVKGSVGIGI-PG   90 (327)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC--------CSCHHHHHHHHHHHHHHHHHHH----TSCCEEEEEE-SS
T ss_pred             ceEEEEEECCCEEEEEEEeCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHHhc----CCccEEEEEe-ee
Confidence            579999999999999999999999988777664        2367888899999998887653    2477888865 88


Q ss_pred             cccCC-CCee
Q 007076          135 LVDAD-GSPV  143 (619)
Q Consensus       135 ~vd~~-G~pl  143 (619)
                      +||.+ |..+
T Consensus        91 ~vd~~~g~v~  100 (327)
T 2ap1_A           91 MPETEDGTLY  100 (327)
T ss_dssp             BSCCTTSCCB
T ss_pred             eEECCCCEEE
Confidence            89765 6554

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=97.86  E-value=1.3e-05  Score=83.88  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=63.2

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEE-EeecccccCCCccccCHHHHHHHHHH---HHHHHHHHcCCCCCCEEEEEEc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSA-SSPIQIWKEGDCIEQSSTDIWHAICA---AVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~-~~~~~~~~~~g~~e~dp~~~~~~~~~---~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      .|+||||||.|+++++++| +|+++.+. +.+++       .. +++++++.+.+   .+++++      ..+|.+|||+
T Consensus         9 ~~~lgiDIGgt~i~~~l~d-~G~il~~~~~~~~~-------~~-~~~~~l~~i~~~~~~i~~~~------~~~i~gIGIa   73 (366)
T 3mcp_A            9 RIVMTLDAGGTNFVFSAIQ-GGKEIADPVVLPAC-------AD-CLDKCLGNLVEGFKAIQAGL------PEAPVAISFA   73 (366)
T ss_dssp             CEEEEEECSSSEEEEEEEE-TTEECSCCEEEECC-------TT-CHHHHHHHHHHHHHHHHTTC------SSCCCEEEEE
T ss_pred             CEEEEEEECcceEEEEEEE-CCEEEEEEEEEECC-------CC-CHHHHHHHHHHHHHHHHHHh------hcCCeEEEEE
Confidence            5899999999999999999 99998776 66655       23 88888888877   444432      1579999997


Q ss_pred             CccccccCC-CCeeeecCCCCCCccce-eec-ccc
Q 007076          131 ATCSLVDAD-GSPVSVSWNGDSRRNII-VWM-DHR  162 (619)
Q Consensus       131 ~~~~~vd~~-G~pl~~~~~~~~~~p~i-~W~-D~R  162 (619)
                      . +|+||.+ |..+.        .|.+ .|. +-.
T Consensus        74 v-PG~Vd~~~G~i~~--------~~nlp~w~~~~~   99 (366)
T 3mcp_A           74 F-PGPADYQAGIIGD--------LPNFPSFRGGVA   99 (366)
T ss_dssp             C-CSSEETTTTEECC--------CTTCGGGTTCBC
T ss_pred             e-cceEeCCCCEEEe--------CCCcccccCCCC
Confidence            6 8999865 76653        3555 687 543

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=97.70  E-value=6.9e-05  Score=75.91  Aligned_cols=69  Identities=14%  Similarity=0.275  Sum_probs=52.2

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      ++||||+|.|++|++++|.+|+++.+.+.+++         .+++++.+.+.+.+++         .+|.+|||+. +|+
T Consensus         5 ~~lgidiggt~i~~~l~d~~g~il~~~~~~~~---------~~~~~~~~~i~~~i~~---------~~i~gigi~~-pG~   65 (292)
T 2gup_A            5 TIATIDIGGTGIKFASLTPDGKILDKTSISTP---------ENLEDLLAWLDQRLSE---------QDYSGIAMSV-PGA   65 (292)
T ss_dssp             CEEEEEEETTEEEEEEECTTCCEEEEEEECCC---------SSHHHHHHHHHHHHTT---------SCCSEEEEEE-SSE
T ss_pred             EEEEEEECCCEEEEEEECCCCCEEEEEEEeCC---------CCHHHHHHHHHHHHHh---------CCCcEEEEEe-cCc
Confidence            38999999999999999999999987665542         3566666665555432         4688899966 889


Q ss_pred             ccCC-CCee
Q 007076          136 VDAD-GSPV  143 (619)
Q Consensus       136 vd~~-G~pl  143 (619)
                      ||.+ |..+
T Consensus        66 vd~~~g~v~   74 (292)
T 2gup_A           66 VNQETGVID   74 (292)
T ss_dssp             ECTTTCBEE
T ss_pred             ccCCCCEEE
Confidence            9865 7665

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=97.65  E-value=7.3e-05  Score=75.57  Aligned_cols=73  Identities=18%  Similarity=0.270  Sum_probs=55.3

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      |+||||+|.|++|++++|.+|+++.+.+.+++       ...+++++++.+.+.++++.++       +.+|||+. +|+
T Consensus         2 ~~lgidiggt~~~~~l~d~~g~il~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~-------~~~igi~~-pG~   66 (289)
T 2aa4_A            2 TTLAIDIGGTKLAAALIGADGQIRDRRELPTP-------ASQTPEALRDALSALVSPLQAH-------AQRVAIAS-TGI   66 (289)
T ss_dssp             CEEEEEECSSEEEEEEECTTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHTTTGGG-------CSEEEEEE-SSE
T ss_pred             eEEEEEeCCCEEEEEEECCCCCEEEEEEecCC-------CCCCHHHHHHHHHHHHHHHHhh-------CCEEEEEe-ccc
Confidence            58999999999999999999999988777765       1345888888888777666442       33677754 788


Q ss_pred             ccCC-CCee
Q 007076          136 VDAD-GSPV  143 (619)
Q Consensus       136 vd~~-G~pl  143 (619)
                      ||.+ |..+
T Consensus        67 vd~~~g~v~   75 (289)
T 2aa4_A           67 IRDGSLLAL   75 (289)
T ss_dssp             EETTEEECS
T ss_pred             eeCCCCEEE
Confidence            8765 5544

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=97.57  E-value=4.6e-05  Score=74.21  Aligned_cols=67  Identities=9%  Similarity=0.042  Sum_probs=46.2

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      +.|++|||||+|++|  ++|.+|++  ..+.+++       ...+++++.+.+.+.+    ++     .++.+|||+. +
T Consensus         5 ~~~~lgiDIGGT~i~--~~d~~g~~--~~~~~t~-------~~~~~~~~~~~i~~~i----~~-----~~i~gigi~~-p   63 (226)
T 3lm2_A            5 DQTVLAIDIGGSHVK--IGLSTDGE--ERKVESG-------KTMTGPEMVAAVTAMA----KD-----MTYDVIAMGY-P   63 (226)
T ss_dssp             GCCEEEEEECSSEEE--EEETTTCC--EEEEECC-------TTCCHHHHHHHHHHHT----TT-----CCCSEEEEEE-S
T ss_pred             CCEEEEEEECCCEEE--EEECCCCE--EEEEECC-------CCCCHHHHHHHHHHHH----Hh-----CCCCEEEEEE-E
Confidence            357999999999999  57888886  2344443       2456776666555443    32     2688899976 8


Q ss_pred             ccccCCCC
Q 007076          134 SLVDADGS  141 (619)
Q Consensus       134 ~~vd~~G~  141 (619)
                      |+||.++.
T Consensus        64 G~Vd~~~~   71 (226)
T 3lm2_A           64 GPVVHNKP   71 (226)
T ss_dssp             SCEETTEE
T ss_pred             eEEECCeE
Confidence            89987643

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=97.39  E-value=0.00031  Score=70.40  Aligned_cols=72  Identities=21%  Similarity=0.244  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCC-CCccchHHHHHHHh
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILGAV  559 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~-~e~~alGAAllA~~  559 (619)
                      ++|++.   +++++++-.+.....   +. ..+++|+++||.++|+.+++.+++.+|+++.++.. .+.+|+|||++|..
T Consensus       182 ~~di~a---~~~~~v~~~l~~~~~---~~-~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~  254 (276)
T 4ehu_A          182 IEDIVA---GIHTSVAKRVSSLVK---RI-GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFD  254 (276)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHH---HH-CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHH
T ss_pred             HHHHHH---HHHHHHHHHHHHHHH---hc-ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHH
Confidence            456654   888888765544332   21 24578999999999999999999999999998874 45789999999864

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=97.36  E-value=0.00044  Score=71.42  Aligned_cols=67  Identities=24%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             CCeEEEEEcCCcceEEEEEc-CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      +.|+||||||.|++|++++| .+|+++...+.++..       ..+       +.+.+++++++.+   .+|.+|||+. 
T Consensus        13 ~~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~~~-------~~~-------~~~~i~~~~~~~~---~~i~gigi~~-   74 (332)
T 1sz2_A           13 TKYALVGDVGGTNARLALCDIASGEISQAKTYSGLD-------YPS-------LEAVIRVYLEEHK---VEVKDGCIAI-   74 (332)
T ss_dssp             -CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG-------CSC-------HHHHHHHHHHHSC---CCCCEEEEEE-
T ss_pred             CCEEEEEEechhheEEEEEECCCCcEEEEEEecCCC-------cCC-------HHHHHHHHHHhcC---CCccEEEEEE-
Confidence            46899999999999999999 589988765554421       112       2334445555432   3688899966 


Q ss_pred             cccccC
Q 007076          133 CSLVDA  138 (619)
Q Consensus       133 ~~~vd~  138 (619)
                      +|+||.
T Consensus        75 pG~vd~   80 (332)
T 1sz2_A           75 ACPITG   80 (332)
T ss_dssp             SSCCCS
T ss_pred             eCceeC
Confidence            888973

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=97.27  E-value=0.00034  Score=70.78  Aligned_cols=66  Identities=21%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +||||+|+|++|++++| +|+++.+.+.+...     ....+++.+++.+.+.++++..   ....+|.+|||+.
T Consensus         2 ~lgiDiGGT~~~~~l~d-~g~il~~~~~~~~~-----~~~~~~~~~~~~i~~~i~~~~~---~~~~~i~~igig~   67 (291)
T 1zbs_A            2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTSGIN-----PFQQDRNEIDTALRSEVLPAIG---QKASSIRAVYFYG   67 (291)
T ss_dssp             EEEEEECSSEEEEEEEE-TTEEEEEEEEECCC-----TTTSCHHHHHHHHTTTTHHHHT---TSTTTCCEEEEEE
T ss_pred             EEEEEeCccceEEEEEe-CCeEEEEEECCCCC-----cccCCHHHHHHHHHHHHHHHhC---CCcccccEEEEEC
Confidence            79999999999999999 99999877654310     0134788888888888876542   2345688888864

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=97.25  E-value=0.00028  Score=74.15  Aligned_cols=76  Identities=21%  Similarity=0.138  Sum_probs=56.1

Q ss_pred             CCeEEEEEcCCcceEEEEEcC----CCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076           54 RSVFLGVDVGTGSARAGLFDE----SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~----~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (619)
                      +.|+||||+|+|++|++++|.    +|+++...+. ++        ..+++.+.+.+.+.++++....   ..+|.+|||
T Consensus        28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~-~~--------~~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi   95 (373)
T 2q2r_A           28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYS-MK--------RKDITEIIEFFNEIIELMPASV---MKRVKAGVI   95 (373)
T ss_dssp             SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEE-CT--------TCBGGGHHHHHHHHHHHSCHHH---HTTEEEEEE
T ss_pred             CCeEEEEEEccccEEEEEEecccCCCccEEEEeee-cC--------CCCHHHHHHHHHHHHHHHhhcc---cccccEEEE
Confidence            468999999999999999998    8988876541 22        1356677777777776654321   246889999


Q ss_pred             cCccccccCCCCee
Q 007076          130 AATCSLVDADGSPV  143 (619)
Q Consensus       130 s~~~~~vd~~G~pl  143 (619)
                      +. +|+||. |...
T Consensus        96 ~~-pG~vd~-g~v~  107 (373)
T 2q2r_A           96 NV-PGPVTG-GAVG  107 (373)
T ss_dssp             EE-SSCEET-TTEE
T ss_pred             Ee-eccccC-CEEe
Confidence            65 888887 7655

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=97.17  E-value=0.00026  Score=74.56  Aligned_cols=80  Identities=10%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHH---HHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAI---CAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~---~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +++||||+|+|++|++++|.+ +++...+.+++...     ..+++++.+.+   .+.+.+++++.+....+|.+| |+.
T Consensus         2 ~~vlgidiGgt~ik~al~d~~-~il~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI-i~~   74 (381)
T 1saz_A            2 FRILTINPGSTSTKLSIFEDE-RMVKMQNFSHSPDE-----LGRFQKILDQLEFREKIARQFVEETGYSLSSFSAF-VSR   74 (381)
T ss_dssp             CEEEEEEECSSEEEEEEEETT-EEEEEEEEECCHHH-----HHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE-EEE
T ss_pred             CeEEEEECCccceeEEEEecc-hheeeeecccCccc-----ccchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE-Eec
Confidence            479999999999999999976 88887777664210     00122233333   666667766554444578888 754


Q ss_pred             ccccccCC-CCe
Q 007076          132 TCSLVDAD-GSP  142 (619)
Q Consensus       132 ~~~~vd~~-G~p  142 (619)
                       +|+||.. |..
T Consensus        75 -pG~vd~~~G~~   85 (381)
T 1saz_A           75 -GGLLDPIPGGV   85 (381)
T ss_dssp             -CCSCSCBCSSE
T ss_pred             -CCCCCCCCCce
Confidence             7888754 653

>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*

Probab=97.14  E-value=0.0047  Score=63.79  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCEEEEecC-CcCCHHHHHHHHhhhC------CceeecCCCC-c
Q 007076          478 DSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGG-LAKNPLFLQQHADIIG------CPIILPRENE-S  548 (619)
Q Consensus       478 ~~~~~~l~~~~rAvlEgiaf~~~~~l~~l-~~~g~~~~~I~~~GG-~a~s~~~~Qi~Advlg------~pV~~~~~~e-~  548 (619)
                      ...++|+++   +++.+|+..+..+.-.. ++.++  ++|+++|| .++|+..+++++..++      +++.+++.++ .
T Consensus       275 ~~~~eDIa~---gll~sVa~~I~~lA~l~A~~~~i--~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~  349 (360)
T 2i7n_A          275 SISKEDLAR---ATLVTITNNIGSIARMCALNENI--DRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYF  349 (360)
T ss_dssp             TCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHTC--CCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCH
T ss_pred             CCCHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC--CeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHH
Confidence            446788765   99999999887764322 23343  47999999 9999999999999985      6887777554 8


Q ss_pred             cchHHHHHH
Q 007076          549 VLLGAAILG  557 (619)
Q Consensus       549 ~alGAAllA  557 (619)
                      +|+|||+.+
T Consensus       350 GAlGAaL~~  358 (360)
T 2i7n_A          350 GAVGALLEL  358 (360)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            899999975

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=97.02  E-value=0.00078  Score=75.38  Aligned_cols=85  Identities=20%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  558 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAllA~  558 (619)
                      ++.++..+.+.+++.+.-.+++.++...-....++.|+++||+++.|.+.+++.+.||.++.+.. ..++.|+|||+.|+
T Consensus       301 tr~~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~  380 (605)
T 4b9q_A          301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG  380 (605)
T ss_dssp             EHHHHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHH
Confidence            46777777778888887777766654322223578999999999999999999999999887644 56788999999998


Q ss_pred             hhcccc
Q 007076          559 VAAKRY  564 (619)
Q Consensus       559 ~~~G~~  564 (619)
                      .-.|..
T Consensus       381 ~l~~~~  386 (605)
T 4b9q_A          381 VLTGDV  386 (605)
T ss_dssp             HHHTSS
T ss_pred             HhcCCC
Confidence            765543

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=96.99  E-value=0.0018  Score=69.51  Aligned_cols=73  Identities=16%  Similarity=0.243  Sum_probs=50.5

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC--EEEEEE
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE--VKGVGF  129 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~i---l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~--I~aIgi  129 (619)
                      ..+||||+|+|++|++++|.+|++   +...+.++|..    ...-+++++++.+.+++++++++.+....+  +.||++
T Consensus        61 G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~ip~~----~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~lGi~f  136 (457)
T 2yhx_A           61 GSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAM----STTAIPSDLWGNXAXSNAAFSSXEFSSXAGSVPLGFTF  136 (457)
T ss_dssp             EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTT----TSCSCTHHHHHHHHHHHHHHHHHHTSSCSSCEEEEEEC
T ss_pred             ceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEcCCc----cCCCCHHHHHHHHHHHHHHHHhhcccccccccceeeEE
Confidence            458999999999999999999988   44444444411    012267999999999999998764322223  345555


Q ss_pred             cC
Q 007076          130 AA  131 (619)
Q Consensus       130 s~  131 (619)
                      +.
T Consensus       137 s~  138 (457)
T 2yhx_A          137 XE  138 (457)
T ss_dssp             CS
T ss_pred             EE
Confidence            43

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=96.96  E-value=0.0011  Score=70.22  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceee---------cCCCCccc
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL---------PRENESVL  550 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~---------~~~~e~~a  550 (619)
                      ++.++..+.+.+++.+.-.+++.++........++.|+++||+++.+.+.+++.+.|+.++.+         .+..++.|
T Consensus       312 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava  391 (409)
T 4gni_A          312 NRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQA  391 (409)
T ss_dssp             EHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHH
Confidence            466776666677777766666555543211235789999999999999999999999987533         34667899


Q ss_pred             hHHHHHHHhh
Q 007076          551 LGAAILGAVA  560 (619)
Q Consensus       551 lGAAllA~~~  560 (619)
                      +|||+.|+.-
T Consensus       392 ~GAa~~~~~~  401 (409)
T 4gni_A          392 RGAALQASLI  401 (409)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9999998753

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=96.94  E-value=0.00019  Score=72.63  Aligned_cols=65  Identities=15%  Similarity=0.090  Sum_probs=34.8

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      |+||||+|+|++|++++| +|+++.+.+.+....     ...+++.+++.+.+++++++.     ..+|.+|||+.
T Consensus         1 ~~lgiDiGGT~i~~~l~d-~g~il~~~~~~~~~~-----~~~~~~~~~~~i~~~i~~~~~-----~~~i~~igig~   65 (291)
T 1zxo_A            1 MILIADSGSTKTDWCVVL-NGAVIKRLGTKGINP-----FFQSEEEIQQKLTASLLPQLP-----EGKFNAVYFYG   65 (291)
T ss_dssp             ---CEECCTTCEEEEEEC-SSSEEEEEEECCCCT-----TTSCSTTTTTTTTC------------------CEEEC
T ss_pred             CEEEEEeccccEEEEEEc-CCeEEEEEECCCCCc-----ccCCHHHHHHHHHHHHHHhcC-----cccccEEEEEc
Confidence            379999999999999999 999998776543210     112345555555666655542     24677888865

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=96.92  E-value=0.0012  Score=69.78  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh-CCceeecC-CCCccchHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPR-ENESVLLGAAILG  557 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl-g~pV~~~~-~~e~~alGAAllA  557 (619)
                      ++.++..+++.+++.+.-.+++.++........++.|+++||+++.+.+.+++.+.| +.+|.... ..++.|+|||+.|
T Consensus       319 ~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a  398 (404)
T 3i33_A          319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA  398 (404)
T ss_dssp             EHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHH
Confidence            456776666677777776666666543222235789999999999999999999999 78887664 5568899999999


Q ss_pred             Hhhc
Q 007076          558 AVAA  561 (619)
Q Consensus       558 ~~~~  561 (619)
                      +.-.
T Consensus       399 ~~l~  402 (404)
T 3i33_A          399 AILI  402 (404)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8643

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=96.92  E-value=0.0015  Score=65.35  Aligned_cols=64  Identities=13%  Similarity=0.238  Sum_probs=46.3

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      |+||||+|||++|++++|++++++.....+.      |...   +    ...+.+++++++++....++..++.++.
T Consensus         2 ~~lGID~GsT~tk~av~d~~~~il~~~~~~~------g~~~---e----~a~~vl~~~~~~a~~~~~~~~~~a~t~~   65 (276)
T 4ehu_A            2 YTMGLDIGSTASKGVILKNGEDIVASETISS------GTGT---T----GPSRVLEKLYGKTGLAREDIKKVVVTGY   65 (276)
T ss_dssp             EEEEEEECSSCEEEEEEETTTEEEEEEEESC------CTTS---S----HHHHHHHHHHHHHCCCGGGEEEEEEEST
T ss_pred             eEEEEEcCccEEEEEEEECCCeEEEEEEecC------CCCH---H----HHHHHHHHHHHHCCCcchhccccccCch
Confidence            6999999999999999999999987654332      1111   1    1234567777777777788888888764

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=96.81  E-value=0.003  Score=67.83  Aligned_cols=78  Identities=15%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CeEEEEEcCCcceEEEEEcCCC-CE---EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           55 SVFLGVDVGTGSARAGLFDESG-KL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g-~i---l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      ..++|||+|+|++|+++++.+| +-   +...+.++|..    ....+.+++|+.+.++|++++++.+... +...||++
T Consensus        68 G~~lalDlGGTn~Rv~~V~l~G~~~~~~i~~~~~~ip~~----~~~~~~~~lfd~Ia~~i~~~l~~~~~~~-~~~~lG~t  142 (451)
T 1bdg_A           68 GNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAE----KMSGSGTELFKYIAETLADFLENNGMKD-KKFDLGFT  142 (451)
T ss_dssp             EEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTT----TTTSBHHHHHHHHHHHHHHHHHHTTCCS-SCEEEEEE
T ss_pred             ceEEEEEeCCCeEEEEEEecCCCCcceEEEEEEEecCCc----ccCCCHHHHHHHHHHHHHHHHHhcCCCc-cccceEEE
Confidence            4689999999999999999888 51   11223333311    1234679999999999999998765433 33667776


Q ss_pred             CccccccC
Q 007076          131 ATCSLVDA  138 (619)
Q Consensus       131 ~~~~~vd~  138 (619)
                      . .+++|.
T Consensus       143 f-sfPv~q  149 (451)
T 1bdg_A          143 F-SFPCVQ  149 (451)
T ss_dssp             E-CSCEEE
T ss_pred             E-eeEecc
Confidence            4 556653

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=96.66  E-value=0.0022  Score=67.36  Aligned_cols=80  Identities=21%  Similarity=0.276  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  558 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAllA~  558 (619)
                      ++.++..+++..++.+.-.+++.++...-....++.|+++||+++.+.+.+.+.+.|+.+|.... ..++.|+|||+.|+
T Consensus       301 t~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~  380 (383)
T 1dkg_D          301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGG  380 (383)
T ss_dssp             EHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTT
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHH
Confidence            45666655666666665544444433211123578999999999999999999999999887655 45688999999876


Q ss_pred             h
Q 007076          559 V  559 (619)
Q Consensus       559 ~  559 (619)
                      .
T Consensus       381 ~  381 (383)
T 1dkg_D          381 V  381 (383)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=96.53  E-value=0.0052  Score=61.69  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=58.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCEEEEecC-CcCCHHHHHHHHhh---hCCceeecCCCC-ccch
Q 007076          478 DSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGG-LAKNPLFLQQHADI---IGCPIILPRENE-SVLL  551 (619)
Q Consensus       478 ~~~~~~l~~~~rAvlEgiaf~~~~~l~~l-~~~g~~~~~I~~~GG-~a~s~~~~Qi~Adv---lg~pV~~~~~~e-~~al  551 (619)
                      ...++|+++   +++.+++..+..+.... ++.+  +++|+++|| .+.|+.+++.+++.   .+.++.+++.++ .+|+
T Consensus       206 g~~~eDIaa---sl~~sV~~~I~~la~~~a~~~~--i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAl  280 (287)
T 2ews_A          206 DFTPSNKLA---AVIGVVGEVVTTMAITVAREFK--TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAI  280 (287)
T ss_dssp             CCCHHHHHH---HHHHHHHHHHHHHHHHHHHHTT--CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHH
T ss_pred             CCCHHHHHH---HHHHHHHHHHHHHHHHHHHhCC--CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHH
Confidence            446888765   99999988776665432 3334  457999999 89999999999998   588898887655 6899


Q ss_pred             HHHHHH
Q 007076          552 GAAILG  557 (619)
Q Consensus       552 GAAllA  557 (619)
                      |||+.|
T Consensus       281 GAaL~~  286 (287)
T 2ews_A          281 GALYLE  286 (287)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            999864

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=96.51  E-value=0.0042  Score=61.73  Aligned_cols=63  Identities=17%  Similarity=0.278  Sum_probs=46.0

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      ++|+||||.|++|.++||. ++++...+.+++        ....+++.    ..++++++..+.+..+|.+|+||+
T Consensus         3 MlL~IDIGNT~iK~gl~d~-~~l~~~~r~~T~--------~~t~de~~----~~l~~ll~~~~~~~~~I~~iiISS   65 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDG-DEIKLRFRHTSK--------VSTSDELG----IFLKSVLRENNCSPETIRKIAICS   65 (266)
T ss_dssp             CEEEEEECSSEEEEEEEET-TEEEEEEEEECS--------CCCHHHHH----HHHHHHHHTTTCCGGGCCEEEEEE
T ss_pred             eEEEEEECCCeEEEEEEEC-CEEEEEEEecCC--------CCCHHHHH----HHHHHHHHHcCCChhhceEEEEec
Confidence            3899999999999999986 577777766654        23455554    345556665555566899999986

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=96.19  E-value=0.0068  Score=70.88  Aligned_cols=80  Identities=18%  Similarity=0.276  Sum_probs=53.2

Q ss_pred             CeEEEEEcCCcceEEEEEcCC-CC--EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDES-GK--LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~-g~--il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      ..+||||+|+|++|+++++.+ |+  ++...+..+.+-..  ....+.+++|+.+.++|.++++..+...+.+ .|||+.
T Consensus       526 G~~lalDlGGTn~Rv~~V~l~~g~~~~~~~~~~~~~ip~~--~~~~~~~~lfd~Ia~~i~~~l~~~~~~~~~l-~lG~tf  602 (917)
T 1cza_N          526 GDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIE--IMQGTGEELFDHIVSCISDFLDYMGIKGPRM-PLGFTF  602 (917)
T ss_dssp             EEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECCCHH--HHTSBHHHHHHHHHHHHHHHHHHHTCCSSCC-EEEEEE
T ss_pred             eEEEEEEECCCcEEEEEEEeCCCcceeEEeeeeEEecCcc--cccCCHHHHHHHHHHHHHHHHHHcCCCccce-eEEEEe
Confidence            468999999999999999975 64  65433333221000  0123568899999999999998765544444 677764


Q ss_pred             ccccccC
Q 007076          132 TCSLVDA  138 (619)
Q Consensus       132 ~~~~vd~  138 (619)
                       .+++|.
T Consensus       603 -sfPv~q  608 (917)
T 1cza_N          603 -SFPCQQ  608 (917)
T ss_dssp             -CSCEEE
T ss_pred             -eccccc
Confidence             455543

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=96.19  E-value=0.0085  Score=70.03  Aligned_cols=73  Identities=12%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCC----E-EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEEEE
Q 007076           55 SVFLGVDVGTGSARAGLFDESGK----L-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVG  128 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~----i-l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~-I~aIg  128 (619)
                      ..+||||+|+|++|++++|.+|+    + +...+.++|..    ..+.+.+++++.+.+++++++++.+...+. ..||+
T Consensus        78 G~~laiDlGGTnirv~lv~~~G~~~~~i~~~~~~~~ip~~----~~~~~~~~lf~~Ia~~i~~~l~~~~~~~~~~~lGi~  153 (917)
T 1cza_N           78 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPEN----IVHGSGSQLFDHVAECLGDFMEKRKIKDKKLPVGFT  153 (917)
T ss_dssp             EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCHH----HHSSBHHHHHHHHHHHHHHHHHHHTCTTSCCCEEEE
T ss_pred             ceEEEEEeCCCeEEEEEEEecCCCcceEEEEEEEEECCcc----cccCCHHHHHHHHHHHHHHHHHhcCCCCCcccEEEE
Confidence            45899999999999999998876    4 45555555421    012367899999999999998765432222 45666


Q ss_pred             EcC
Q 007076          129 FAA  131 (619)
Q Consensus       129 is~  131 (619)
                      ++.
T Consensus       154 fs~  156 (917)
T 1cza_N          154 FSF  156 (917)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            654

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=96.13  E-value=0.0063  Score=66.51  Aligned_cols=83  Identities=22%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  558 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAllA~  558 (619)
                      ++.++..+++.+++.+.-.+++.++...-....++.|+++||+++.|.+.+.+.+.|+.++.... ..++.|+|||+.|+
T Consensus       270 tr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~  349 (509)
T 2v7y_A          270 TRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGG  349 (509)
T ss_dssp             EHHHHHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHH
Confidence            46666656666666666555555544321113578999999999999999999999998876544 56688999999998


Q ss_pred             hhcc
Q 007076          559 VAAK  562 (619)
Q Consensus       559 ~~~G  562 (619)
                      .-.|
T Consensus       350 ~l~~  353 (509)
T 2v7y_A          350 VIAG  353 (509)
T ss_dssp             HHHT
T ss_pred             HhcC
Confidence            6444

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=95.91  E-value=0.018  Score=63.73  Aligned_cols=77  Identities=22%  Similarity=0.318  Sum_probs=55.1

Q ss_pred             CeEEEEEcCCcceEEEEEc-CCCCEEEEEEeeccccc-CCC------ccc---cCHHH----HHHHHHHHHHHHHHHcCC
Q 007076           55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGD------CIE---QSSTD----IWHAICAAVDSACSLANV  119 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~~~~~~~-~~g------~~e---~dp~~----~~~~~~~~l~~~~~~~~~  119 (619)
                      .|-++||||||.+.+.|+| .+|++++..+.-.|... ..+      ++.   ...+.    +.+.+.+++.++.++.++
T Consensus       206 ~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~l~~~~~i  285 (631)
T 3zyy_X          206 VFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHGV  285 (631)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999 78999999887776432 221      221   11223    444555555566666688


Q ss_pred             CCCCEEEEEEcC
Q 007076          120 DGEEVKGVGFAA  131 (619)
Q Consensus       120 ~~~~I~aIgis~  131 (619)
                      ++++|..|.|++
T Consensus       286 ~~~~I~~~~v~G  297 (631)
T 3zyy_X          286 EKKEIMAAVVAG  297 (631)
T ss_dssp             CGGGEEEEEEEE
T ss_pred             CHHHeeEEEEEc
Confidence            899999999986

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=95.88  E-value=0.0079  Score=67.98  Aligned_cols=83  Identities=18%  Similarity=0.302  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA  558 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAllA~  558 (619)
                      ++.++..+...+++.+.-.++..++...-..-.++.|+++||+++.|.+.+++.+.||+++.... ..++.|+|||+.|+
T Consensus       302 tr~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~  381 (675)
T 3d2f_A          302 SREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICA  381 (675)
T ss_dssp             EHHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHH
Confidence            46666655566666666555555543321112578999999999999999999999999886544 56788999999998


Q ss_pred             hhcc
Q 007076          559 VAAK  562 (619)
Q Consensus       559 ~~~G  562 (619)
                      .-.|
T Consensus       382 ~ls~  385 (675)
T 3d2f_A          382 IHSP  385 (675)
T ss_dssp             HTCS
T ss_pred             HhCC
Confidence            6544

>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*

Probab=95.73  E-value=0.024  Score=60.93  Aligned_cols=73  Identities=21%  Similarity=0.280  Sum_probs=48.1

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCE-EE--EEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEEc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKL-LG--SASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDG-EEVKGVGFA  130 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~i-l~--~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~-~~I~aIgis  130 (619)
                      ..+|+||+|+|++|+++++.+|+- ..  ..+.++|..    ...-..+++|+.+.++|.+.+++..... .+...+|++
T Consensus        80 G~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~Ip~~----~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~l~lGft  155 (485)
T 3o8m_A           80 GDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDH----LRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFT  155 (485)
T ss_dssp             EEEEEEEESSSEEEEEEEEEESSSCEEEEEEEEECCTT----GGGSBHHHHHHHHHHHHHHHHHHHCTTCCSSCEEEEEE
T ss_pred             eEEEEEEecCCeEEEEEEEECCCCceEEEEEEEecCch----hccCCHHHHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence            368999999999999999977651 11  112222211    1122378999999999999998754321 345566765


Q ss_pred             C
Q 007076          131 A  131 (619)
Q Consensus       131 ~  131 (619)
                      .
T Consensus       156 f  156 (485)
T 3o8m_A          156 F  156 (485)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=95.56  E-value=0.018  Score=56.56  Aligned_cols=61  Identities=21%  Similarity=0.372  Sum_probs=44.2

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      ++|+||+|.|++|.++|| +++++...+.+++       .....+++...+.+.++.       ...+|.+|+||+
T Consensus         4 M~L~IDIGNT~ik~gl~~-~~~l~~~~r~~T~-------~~~t~de~~~~l~~l~~~-------~~~~i~~i~IsS   64 (249)
T 3bex_A            4 MYLLVDVGNTHSVFSITE-DGKTFRRWRLSTG-------VFQTEDELFSHLHPLLGD-------AMREIKGIGVAS   64 (249)
T ss_dssp             EEEEEEECSSEEEEEEES-SSSSCEEEEEECC-------TTCCHHHHHHHHHHHHGG-------GGGGEEEEEEEE
T ss_pred             eEEEEEECCCeEEEEEEE-CCEEEEEEEecCC-------CCCCHHHHHHHHHHHHhh-------ccccCCEEEEEc
Confidence            479999999999999998 5677776666665       245567777665555433       135789999976

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=95.50  E-value=0.015  Score=64.10  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-Cceeec-CCCCccchHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILP-RENESVLLGAAILG  557 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~~-~~~e~~alGAAllA  557 (619)
                      ++.++..+...+++.+.-.+++.++...-....++.|+++||+++.|.+.+.+.+.|+ +++... ...++.|+|||+.|
T Consensus       298 tr~~~e~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a  377 (554)
T 1yuw_A          298 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA  377 (554)
T ss_dssp             EHHHHHHHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHH
Confidence            3555554445555555544444443321111257899999999999999999999996 777554 45678899999999


Q ss_pred             Hhhcc
Q 007076          558 AVAAK  562 (619)
Q Consensus       558 ~~~~G  562 (619)
                      +.-.|
T Consensus       378 ~~l~~  382 (554)
T 1yuw_A          378 AILSG  382 (554)
T ss_dssp             HHTTS
T ss_pred             HHhcC
Confidence            86544

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=95.06  E-value=0.016  Score=59.74  Aligned_cols=76  Identities=16%  Similarity=0.097  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----C-c-CEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH----K-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLG  552 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~----~-~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alG  552 (619)
                      +++++..+++..++.+.-.+++.++   +.+.    . + +.|+++||+++.+.+.+.+.+.|+.||.+.. ..+++|+|
T Consensus       242 ~~~~~~~~~~~~~~~i~~~i~~~l~---~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~G  318 (344)
T 1jce_A          242 KGGEVREALRSVVVAIVESVRTTLE---KTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKG  318 (344)
T ss_dssp             EHHHHHHHTHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHH---hCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHH
Confidence            3566665566666666655555444   3321    1 2 5799999999999999999999999998774 55688999


Q ss_pred             HHHHHH
Q 007076          553 AAILGA  558 (619)
Q Consensus       553 AAllA~  558 (619)
                      ||++|.
T Consensus       319 aa~~a~  324 (344)
T 1jce_A          319 AGMVLD  324 (344)
T ss_dssp             HHHGGG
T ss_pred             HHHHHh
Confidence            999875

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=94.95  E-value=0.0064  Score=67.93  Aligned_cols=80  Identities=23%  Similarity=0.300  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAl  555 (619)
                      ++.++..+...+++.+.-.+++.   |++.+   ..++.|+++||+++.|.+.+++.+.||.++.... ..++.|+|||+
T Consensus       301 tr~~fe~l~~~~~~~i~~~i~~~---L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~  377 (605)
T 2kho_A          301 TRAKLESLVEDLVNRSIEPLKVA---LQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAV  377 (605)
T ss_dssp             EHHHHHTTCCSTTGGGTSHHHHH---HHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHH
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHH---HHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHH
Confidence            34554433334444444333333   33433   3578999999999999999999999998875544 56788999999


Q ss_pred             HHHhhcc
Q 007076          556 LGAVAAK  562 (619)
Q Consensus       556 lA~~~~G  562 (619)
                      .|+.-.|
T Consensus       378 ~a~~l~~  384 (605)
T 2kho_A          378 QGGVLTG  384 (605)
T ss_dssp             HHTTTTT
T ss_pred             HHHHhcC
Confidence            9976444

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=94.86  E-value=0.052  Score=53.90  Aligned_cols=63  Identities=21%  Similarity=0.273  Sum_probs=44.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|.||+|.|++|.++|| +++++...+.+++       .....+++...    ++++++..+++..+|.+|.||+
T Consensus         2 lL~IDIGNT~ik~gl~~-~~~l~~~~r~~T~-------~~~t~de~~~~----l~~ll~~~~~~~~~i~~iiISS   64 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFE-EGELRQHWRMETD-------RHKTEDEYGML----VKQLLEHEGLSFEDVKGIIVSS   64 (268)
T ss_dssp             EEEEEECSSEEEEEEEE-TTEEEEEEEEECC-------TTCCHHHHHHH----HHHHHHHTTCCGGGCCEEEEEE
T ss_pred             EEEEEECcCcEEEEEEE-CCEEEEEEEecCC-------CcCCHHHHHHH----HHHHHHHcCCCcccCcEEEEEc
Confidence            68999999999999998 5567776666654       23445666554    4455555555556788998876

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=94.63  E-value=0.12  Score=54.70  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNA------HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  544 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~------~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~  544 (619)
                      ++.++..+.++.+|-+.-.+++.++...-      ....+..|+++||+|+-+.+.+++++.||+||++..
T Consensus       290 s~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~  360 (419)
T 4a2a_A          290 TAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC  360 (419)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence            45677778889999998888888876642      123577899999999999999999999999998655

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=93.75  E-value=0.13  Score=53.58  Aligned_cols=63  Identities=11%  Similarity=0.009  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC
Q 007076          482 KQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR  544 (619)
Q Consensus       482 ~~l~~~~rAvlEgiaf~~~~~l~~l~~-~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~  544 (619)
                      .++..+.+..++.++-.+++.++.+.. . ...++.|+++||+++.+.+.+++++.|+.||.+..
T Consensus       274 ~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~  338 (377)
T 2ych_A          274 GRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN  338 (377)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence            345555678889998888888886632 2 34789999999999999999999999999998864

>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*

Probab=93.60  E-value=0.22  Score=51.33  Aligned_cols=83  Identities=13%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-CceeecCCC----C-ccchHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPREN----E-SVLLGA  553 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~~~~~----e-~~alGA  553 (619)
                      +++|..+   -+.|-.|.++.+.++.+.   ..+++|+++|||++|+.+++.++..+. .+|...+.-    + --|+.-
T Consensus       257 s~~Dv~A---TLt~~TA~sIa~~~~~~~---~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aF  330 (371)
T 3qbx_A          257 PAADIQA---TLLELSARSISESLLDAQ---PDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAF  330 (371)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHC---TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHhcc---CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHH
Confidence            4677653   667777766666555443   246899999999999999999999985 777665431    1 225566


Q ss_pred             HHHHHhhc-cccCCHH
Q 007076          554 AILGAVAA-KRYSSLI  568 (619)
Q Consensus       554 AllA~~~~-G~~~~~~  568 (619)
                      |+||...+ |.-.++.
T Consensus       331 A~LA~~~l~g~p~~lp  346 (371)
T 3qbx_A          331 AWLAHRFLERLPGNCP  346 (371)
T ss_dssp             HHHHHHHHTTCCCSCH
T ss_pred             HHHHHHHHcCCCCCCC
Confidence            67766543 4333443

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=93.54  E-value=0.2  Score=51.23  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecC----CCCccchH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG  552 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~----~~e~~alG  552 (619)
                      .+.+++.   ++.+.++-.+.+.++.+.+. ...++|.++||.+.|..+++.+.+.+   |.+|.+++    .+.+.++|
T Consensus       216 ~~~diAa---~fq~~l~~~l~~~~~~~~~~-~~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG  291 (330)
T 2ivn_A          216 RVEDLAY---SFQETAFAALVEVTERAVAH-TEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIA  291 (330)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-HCCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHH
Confidence            3567654   77777776666666554331 13568999999999999999999887   67887765    33466888


Q ss_pred             HHHHHHhhcccc
Q 007076          553 AAILGAVAAKRY  564 (619)
Q Consensus       553 AAllA~~~~G~~  564 (619)
                      +|.......|..
T Consensus       292 ~a~~~~~~~~~~  303 (330)
T 2ivn_A          292 YTGLRMYKAGIS  303 (330)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHhcCCC
Confidence            887665544543

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=92.97  E-value=0.32  Score=49.83  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecC----CCCccchH
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLG  552 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l-~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~----~~e~~alG  552 (619)
                      +.+++.   ++.++++-.+.+.++.. ++.+  +++|.++||.+.|..+++.+.+.+   |.+|.+++    .+.+.++|
T Consensus       222 ~~diAa---sfq~~l~~~l~~~~~~a~~~~g--~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG  296 (334)
T 3eno_A          222 IEDISY---SIQETAFAMLVEVLERALYVSG--KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIA  296 (334)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHHHT--CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHH
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHcC--CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHH
Confidence            456654   67777776666665543 3333  579999999999999999999988   77887765    34566788


Q ss_pred             HHHHHHhhccccCC
Q 007076          553 AAILGAVAAKRYSS  566 (619)
Q Consensus       553 AAllA~~~~G~~~~  566 (619)
                      +|.......|...+
T Consensus       297 ~a~~~~~~~g~~~~  310 (334)
T 3eno_A          297 QAALLMYKSGVRMS  310 (334)
T ss_dssp             HHHHHHHHTTCCCC
T ss_pred             HHHHHHHHcCCCCC
Confidence            88776666665544

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=92.72  E-value=0.18  Score=53.51  Aligned_cols=77  Identities=6%  Similarity=0.057  Sum_probs=53.1

Q ss_pred             CCeEEEEEcCCcceEEEEEcC--CC-CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           54 RSVFLGVDVGTGSARAGLFDE--SG-KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~--~g-~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      +++++||||||+++|+++...  +| ++++....|..-. ..| .-.|.+..-+++.++++++-+.++....+=..++|+
T Consensus         7 ~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~gv-~~G-~I~di~~~~~~I~~av~~ae~~~g~~i~~~v~v~i~   84 (419)
T 4a2a_A            7 TVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGL-DEG-EIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFS   84 (419)
T ss_dssp             CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCSE-ETT-EESBHHHHHHHHHHHHHHHHHHHTSCCCSEEEEEEC
T ss_pred             CCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCCe-eCC-EEEcHHHHHHHHHHHHHHHHHHcCCCcCceEEEEEc
Confidence            468999999999999999973  23 6777766653211 222 346888888888888888766666544441467777


Q ss_pred             Cc
Q 007076          131 AT  132 (619)
Q Consensus       131 ~~  132 (619)
                      +.
T Consensus        85 g~   86 (419)
T 4a2a_A           85 SV   86 (419)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=92.66  E-value=0.25  Score=51.20  Aligned_cols=70  Identities=13%  Similarity=0.068  Sum_probs=43.2

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCC--EEEEEEeeccccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGK--LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~--il~~~~~~~~~~~-~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +.++|||||||++|++++. +|+  +......++|..- ..| .-.|++.+.+++.+++++    .+....+ ..+++++
T Consensus        13 ~~~vgiDiGt~~i~~~~~~-~~~~~i~~~g~~~~ps~~~~~g-~i~d~~~~~~~ik~~~~~----~~~~~~~-v~~~i~~   85 (377)
T 2ych_A           13 VEALGLEIGASALKLVEVS-GNPPALKALASRPTPPGLLMEG-MVAEPAALAQEIKELLLE----ARTRKRY-VVTALSN   85 (377)
T ss_dssp             CCCEEEEECSSEEEEEEEE-TTTTEEEEEEEEECCTTSEETT-EESCHHHHHHHHHHHHHH----HTCCCCE-EEEEECG
T ss_pred             CceEEEEeCCCeEEEEEEe-CCceEEEEEEeEECCCCcccCC-CcCCHHHHHHHHHHHHHH----cCCCcce-EEEEecC
Confidence            4589999999999999996 554  4444455555322 222 346787777666665554    3433332 3566655

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=92.34  E-value=0.36  Score=49.29  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=50.8

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e-~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      ++||||.++..++++|++. |+++......+. .+..|+.. .....-.+.+..+++++++++++...+|.+|+++.
T Consensus         2 ~iLgIdts~~~~~val~~~-g~i~~~~~~~~~-~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~Ia~~~   76 (330)
T 2ivn_A            2 LALGIEGTAHTLGIGIVSE-DKVLANVFDTLT-TEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQ   76 (330)
T ss_dssp             CEEEEECSSSEEEEEEECS-SCEEEEEEEECC-CTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEE
T ss_pred             EEEEEEccCCCeEEEEEEC-CEEEEEEEEEee-cccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEEC
Confidence            3899999999999999974 578866544432 11223321 11223345566778888888888889999998864

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=92.19  E-value=0.45  Score=52.91  Aligned_cols=77  Identities=22%  Similarity=0.358  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh-CCceeecC----CCCccchHH
Q 007076          479 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPR----ENESVLLGA  553 (619)
Q Consensus       479 ~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl-g~pV~~~~----~~e~~alGA  553 (619)
                      ..+.+++.   ++.++++-.+.+.++...+. ..+++|.++||.+.|..+++.+...+ |.+|..+.    .+.+.++|-
T Consensus       570 ~~~~dIAa---sFh~ala~~L~~~~~ra~~~-~g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLGQ  645 (657)
T 3ttc_A          570 APVNQRAW---AFHDALAQGFAALMREQATM-RGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQ  645 (657)
T ss_dssp             CCHHHHHH---HHHHHHHHHHHHHHHHHHHT-TTCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHHH
T ss_pred             CCHHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHHH
Confidence            35667654   78888887777776655432 24579999999999999999999998 78886543    445668999


Q ss_pred             HHHHHh
Q 007076          554 AILGAV  559 (619)
Q Consensus       554 AllA~~  559 (619)
                      |++|+.
T Consensus       646 A~~a~~  651 (657)
T 3ttc_A          646 GVIAAA  651 (657)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998863

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=91.94  E-value=0.33  Score=49.68  Aligned_cols=81  Identities=17%  Similarity=0.243  Sum_probs=54.0

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCcccc-CHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQ-SSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~-dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      |++.++||||-.+..+-++|++ +++++......+.. +.+|.... ....-.+.+...++++++++++...+|.+|+++
T Consensus         3 ~~~M~iLgIdts~~~~svAl~~-~~~i~~~~~~~~~~-~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~Iav~   80 (334)
T 3eno_A            3 MDPMIVLGLEGTAHTISCGIID-ESRILAMESSMYRP-KTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDLIGFS   80 (334)
T ss_dssp             CCCCEEEEEECSSSEEEEEEEE-SSCCCEEEEEECCC-SSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred             ccCceEEEEECCCcCeEEEEEE-CCEEEEEEEEeecc-ccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence            3334699999999999999998 45777764443321 22233321 122334566778888888888888999999997


Q ss_pred             Cccc
Q 007076          131 ATCS  134 (619)
Q Consensus       131 ~~~~  134 (619)
                      .-+|
T Consensus        81 ~gPG   84 (334)
T 3eno_A           81 MGPG   84 (334)
T ss_dssp             CSSS
T ss_pred             cCCC
Confidence            6443

>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}

Probab=91.84  E-value=0.38  Score=49.56  Aligned_cols=81  Identities=19%  Similarity=0.291  Sum_probs=54.1

Q ss_pred             CCCCeEEEEEcCCc--ceEEEEEcCCCC---EEEEEEeecccc------c--CCCcccc-CH----HHHHHHHHHHHHHH
Q 007076           52 RSRSVFLGVDVGTG--SARAGLFDESGK---LLGSASSPIQIW------K--EGDCIEQ-SS----TDIWHAICAAVDSA  113 (619)
Q Consensus        52 m~~~~~lgIDiGTT--siKa~l~d~~g~---il~~~~~~~~~~------~--~~g~~e~-dp----~~~~~~~~~~l~~~  113 (619)
                      |+..++||+=.|||  +|-+++++-+|+   ++.....||+..      .  .++..+. ..    .++=+...++++++
T Consensus         2 ~~~~~~iGlMSGTSlDGiD~alv~~~~~~~~~~~~~~~pyp~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~~   81 (370)
T 3cqy_A            2 MNKAYYIGLMSGTSMDGVDAVLVDFAGEQPQLIGTHTETIPTHLLKGLQRLCLPGTDEINRLGRLDRSVGKLFALAVNNL   81 (370)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEECSSSSCEEEEEEEECCCHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecccchhhHeEEEEEEeCCeEEEEeeeeecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            66668999999998  699999996654   677778888631      1  1111110 01    12334455777788


Q ss_pred             HHHcCCCCCCEEEEEEcCc
Q 007076          114 CSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus       114 ~~~~~~~~~~I~aIgis~~  132 (619)
                      +++.++++.+|.+||.-+|
T Consensus        82 l~~~~~~~~~i~~IGsHGQ  100 (370)
T 3cqy_A           82 LAKTKIAKDEIIAIGSHGQ  100 (370)
T ss_dssp             HHHHCCCGGGEEEEEEEEE
T ss_pred             HHHcCCCcccccEEEeCCc
Confidence            8888888889999998553

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=91.77  E-value=0.38  Score=54.60  Aligned_cols=76  Identities=14%  Similarity=0.262  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeecC----CCCccch
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLL  551 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l-~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~----~~e~~al  551 (619)
                      .+.+++.   ++.++++-.+.+....+ ++.|  +++|.++||.+.|..+++.+.+.+   |.+|..+.    ...+.|+
T Consensus       665 ~~~dIAa---sFq~ala~~L~~~~~~a~~~~g--~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~DgGial  739 (761)
T 3vth_A          665 EKSYISA---KFHNTVVNFTYDLANLIRKETG--INKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISL  739 (761)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHHHHHC--CCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSSGGGHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHHhC--CCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCchHHHH
Confidence            3455544   66677776666655544 3334  578999999999999999999886   78887654    3456689


Q ss_pred             HHHHHHHhh
Q 007076          552 GAAILGAVA  560 (619)
Q Consensus       552 GAAllA~~~  560 (619)
                      |.|++|+..
T Consensus       740 GQA~~a~~~  748 (761)
T 3vth_A          740 GQAVIANKI  748 (761)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988643

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=91.32  E-value=0.34  Score=55.19  Aligned_cols=81  Identities=21%  Similarity=0.328  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---CCceeec----CCCCccchH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILP----RENESVLLG  552 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~----~~~e~~alG  552 (619)
                      .+.+++.   ++.+.++-.+.+.+..+.+. ..+++|.++||.+.|.++++.+.+.+   |..|.++    ..+.+.|+|
T Consensus       677 ~~~dIAa---sfQ~al~~~L~~~~~~a~~~-tg~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALG  752 (772)
T 4g9i_A          677 SPADIAY---SAHLALARAFAHTAVERARE-FGVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVG  752 (772)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHHHHHHT-TTCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHH
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHHHHHHH-hCcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHH
Confidence            3556554   66666665555555544331 24678999999999999999998875   5667654    345567999


Q ss_pred             HHHHHHhhcccc
Q 007076          553 AAILGAVAAKRY  564 (619)
Q Consensus       553 AAllA~~~~G~~  564 (619)
                      .|++|+..+.-|
T Consensus       753 QA~iA~~~L~~~  764 (772)
T 4g9i_A          753 QAFLGGLYLEGY  764 (772)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhcc
Confidence            999998766444

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=91.24  E-value=0.36  Score=48.96  Aligned_cols=69  Identities=10%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCC---ceeecCC-CCccchHHHHHH
Q 007076          483 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PIILPRE-NESVLLGAAILG  557 (619)
Q Consensus       483 ~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~---pV~~~~~-~e~~alGAAllA  557 (619)
                      .+...++..++.++-.+.   +.+++. ..++.|+++||+|+  ++.+.+.+.++.   ++.++.. .++.|+|+++++
T Consensus       247 ~~~~~i~~~~~~~~~~i~---~~i~~~-~~~~~vvl~GGga~--ll~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~  319 (320)
T 2zgy_A          247 IVTEAMNEALRKLEQRVL---NTLNEF-SGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG  319 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHTTC-CCCCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHhh-cCCCeEEEECChHH--HHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence            333334455555554333   334332 35689999999986  488999999998   5766554 558899999865

>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*

Probab=90.36  E-value=0.36  Score=51.50  Aligned_cols=72  Identities=14%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             eEEEEEcCCcceEEEEEcCCCC-----EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           56 VFLGVDVGTGSARAGLFDESGK-----LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~-----il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      .+|+||+|+|+.|+++++..|.     .+...+..+++-.+  ...-..+++|+.+.++|.+.+++.+.. .+..-+|++
T Consensus        78 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~~~Ip~~--l~~gt~~eLFd~IA~~i~~fl~~~~~~-~~~lpLGfT  154 (470)
T 3f9m_A           78 DFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPED--AMTGTAEMLFDYISECISDFLDKHQMK-HKKLPLGFT  154 (470)
T ss_dssp             EEEEEEESSSEEEEEEEEEEC----CEEEEEEEEEEECCHH--HHSSBHHHHHHHHHHHHHHHHHHTTCS-SSCCEEEEE
T ss_pred             EEEEEEecCceEEEEEEEECCCCCCcceEEEEEEeecCChH--hccCCHHHHHHHHHHHHHHHHhhcccc-ccccceEEE
Confidence            5899999999999999995443     23333333331100  012246899999999999999875432 233345554

>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}

Probab=89.53  E-value=0.9  Score=48.08  Aligned_cols=60  Identities=17%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEe--ecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASS--PIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV  119 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~--~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~  119 (619)
                      ..+|+||+|+|++|+++++..|.+ ...+.  ++|....    .-..+++|+.+.++|.+.+++.+.
T Consensus        59 G~~LAlDlGGTn~RV~~V~l~g~~-~~~~~~~~ip~~~~----~g~~~~LFd~Ia~~i~~fl~~~~~  120 (445)
T 3hm8_A           59 GDFLALDLGGTNFRVLLVRVTTGV-QITSEIYSIPETVA----QGSGQQLFDHIVDCIVDFQQKQGL  120 (445)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSSE-EEEEEEECCCHHHH----TSBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEEecCCeEEEEEEEECCce-EEEEEEeccCcccc----CCCHHHHHHHHHHHHHHHHHHhCc
Confidence            358999999999999999977663 22222  2331111    114678999999999999886543

>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*

Probab=88.77  E-value=0.8  Score=50.10  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCEEEEecCCcCCHHHHHHHHhhhCC-ceeecC--CCCccchHHHHH
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPR--ENESVLLGAAIL  556 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l-~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~--~~e~~alGAAll  556 (619)
                      ..+++.   ++.+.++-.+.+.+..+ ++.  .+++|.++||.+.|..+++.+....+. .|.++.  .+.+.++|+|+.
T Consensus       280 ~~dIAa---sfQ~~l~~~L~~~~~~a~~~t--g~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~  354 (576)
T 3ven_A          280 YRDLAA---TAQAALERAVFGLADSVLART--GERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAA  354 (576)
T ss_dssp             GHHHHH---HHHHHHHHHHHHHHHHHHHHH--TCSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHH
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHc--CCCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHH
Confidence            467665   55555555555554443 333  367999999999999999998887665 665543  455778999999


Q ss_pred             HHhhccc
Q 007076          557 GAVAAKR  563 (619)
Q Consensus       557 A~~~~G~  563 (619)
                      +....|.
T Consensus       355 a~~~~g~  361 (576)
T 3ven_A          355 VAVELGD  361 (576)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            8766554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=87.87  E-value=1.4  Score=48.14  Aligned_cols=80  Identities=13%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             CCCCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccC-HHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQS-STDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        52 m~~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~d-p~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      |++.++||||-.+..+.++|++.+++++......... +.+|.+... ...-.+.+...+++++++  +...+|.+|+++
T Consensus         3 m~~m~iL~i~ts~~~~~~al~~~~~~~~~~~~~~~~~-~~gg~~p~~a~~~h~~~l~~~i~~~l~~--~~~~~id~ia~~   79 (540)
T 3en9_A            3 MDPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKP-PKQGINPREAADHHAETFPKLIKEAFEV--VDKNEIDLIAFS   79 (540)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTSCEEEEEEEECCC-CCSSSSCCCHHHHHHHHHHHHHHHHHHH--SCGGGCCEEEEE
T ss_pred             cccceEEEEEcCccceEEEEEECCCeEEEEEEEeecC-CCCCCChHHHHHHHHHHHHHHHHHHHHh--CCHhHCcEEEEe
Confidence            3334699999999999999999887888876554321 123433222 234455666777777776  566789999987


Q ss_pred             Cccc
Q 007076          131 ATCS  134 (619)
Q Consensus       131 ~~~~  134 (619)
                      ..+|
T Consensus        80 ~gPG   83 (540)
T 3en9_A           80 QGPG   83 (540)
T ss_dssp             EESS
T ss_pred             cCCC
Confidence            6444

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=86.29  E-value=1.5  Score=39.21  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEE
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLG   80 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~   80 (619)
                      +||||.|+..++.++.|..|.+..
T Consensus         5 iLGiDpG~~riGvAv~d~~g~~a~   28 (150)
T 1vhx_A            5 ILGLDLGTKTLGVALSDEMGWTAQ   28 (150)
T ss_dssp             EEEEEECSSEEEEEEECTTSSSEE
T ss_pred             EEEEEccCCEEEEEEEECCCCEEe
Confidence            899999999999999999887643

>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*

Probab=85.36  E-value=1.7  Score=42.82  Aligned_cols=30  Identities=13%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEe
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASS   84 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~   84 (619)
                      .+.|.||+|-|++|.++||.+++++...+.
T Consensus        23 ~M~L~IDiGNT~ik~g~~~~~~~~~~~~r~   52 (271)
T 2f9w_A           23 SMILELDCGNSLIKWRVIEGAARSVAGGLA   52 (271)
T ss_dssp             CEEEEEEECSSCEEEEEEETTTEEEEEEEE
T ss_pred             CcEEEEEeCCCeeEEEEEeCCCEEEEEEEe
Confidence            358999999999999999855666665443

>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}

Probab=85.33  E-value=0.78  Score=46.48  Aligned_cols=45  Identities=16%  Similarity=0.160  Sum_probs=33.5

Q ss_pred             cCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHH
Q 007076          513 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA  558 (619)
Q Consensus       513 ~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~  558 (619)
                      ...|.++|...-..++.+.++ .+|.++...+.++++..|-..++.
T Consensus       259 ~~~V~LiG~~~L~~~Y~~AL~-~~G~~~~~~d~d~a~~~GL~~~a~  303 (330)
T 3t69_A          259 VDGVCLVGSGGLGTLYRTALE-SQGLNVRAVDADEAVRAGLSAAAR  303 (330)
T ss_dssp             CCEEEEEECHHHHHHHHHHHH-HTTCEEEEEEHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCHHHHHHHHHHHH-HcCCCceeeCHHHHHHHHHHHHHH
Confidence            367999999888888888886 489998877655565566554443

>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}

Probab=83.23  E-value=1.9  Score=40.88  Aligned_cols=64  Identities=13%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      +|+||-.|..+-++|++. |+++..... ..        .+..+    .+...+++++++.++...+|.+|+++.-+|
T Consensus         4 iLaIdTS~~~~svAl~~~-~~~~~~~~~-~~--------~~Hs~----~L~p~i~~~L~~a~~~~~dld~Iav~~GPG   67 (213)
T 3r6m_A            4 ILAIDTATENCSVALLVN-DQVISRSEV-AP--------RDHTK----KVLPMVDEVLKEAGLTLQDLDALAFGRGPG   67 (213)
T ss_dssp             EEEEECSSSEEEEEEESS-SCEEEEEEE-CC--------SCCHH----HHHHHHHHHHHTTTCCTTTCSEEEEEEESS
T ss_pred             EEEEEccCcceEEEEEEC-CEEEEEEEe-ch--------HHHHH----HHHHHHHHHHHHcCCCHHHccEEEEecCCC
Confidence            899999999999999974 777765321 11        12223    344567777888888889999999975343

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=83.04  E-value=1.3  Score=44.74  Aligned_cols=20  Identities=20%  Similarity=0.265  Sum_probs=17.6

Q ss_pred             eEEEEEcCCcceEEEEEcCC
Q 007076           56 VFLGVDVGTGSARAGLFDES   75 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~   75 (619)
                      .+.+||+||.++|..+++.+
T Consensus        13 ~~a~IDiGSns~rl~I~~~~   32 (315)
T 1t6c_A           13 RVASIDIGSYSVRLTIAQIK   32 (315)
T ss_dssp             EEEEEEECSSEEEEEEEEEE
T ss_pred             EEEEEEECcCcEEEEEEEEc
Confidence            37899999999999999943

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=82.73  E-value=0.85  Score=46.17  Aligned_cols=31  Identities=19%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeeccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQI   88 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~   88 (619)
                      +||+|||+-++|+++++.+|++ ...+.+.|.
T Consensus         2 iiG~DIGGAn~K~a~~~~~g~~-~~~~~~~Pl   32 (334)
T 3cet_A            2 ILGIDIGGANTKITELHENGEF-KVHHLYFPM   32 (334)
T ss_dssp             EEEEEEC--CEEEEEECSTTCC-EEEEC----
T ss_pred             eeEEEecccceeeeeecCCCce-EEEEEecCC
Confidence            7999999999999999989988 666666664

>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}

Probab=82.59  E-value=3.6  Score=42.56  Aligned_cols=46  Identities=13%  Similarity=0.073  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCc-CCHHHHHHHHhh
Q 007076          489 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADI  535 (619)
Q Consensus       489 rAvlEgiaf~~~~~l~~l~~-~g~~~~~I~~~GG~a-~s~~~~Qi~Adv  535 (619)
                      +-++|..+|+++..+-.+.- .| .++.|+++||.+ +++.+++.+.+-
T Consensus       300 ~la~d~f~yriak~Iga~aa~LG-~vDaIVfTGGIgEns~~vr~~I~~~  347 (398)
T 4ijn_A          300 KLAYDVYIHRLRKYIGAYMAVLG-RTDVISFTAGVGENVPPVRRDALAG  347 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-SCCEEEEEHHHHHHCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CCcEEEECCccccccHHHHHHHHHH
Confidence            46788889988877655433 33 688999999988 556677655543

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=81.95  E-value=2.3  Score=45.97  Aligned_cols=74  Identities=11%  Similarity=0.111  Sum_probs=47.1

Q ss_pred             EeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C--CCcCEEEEecCCcCCHHHHHHHHhhhCC-ceeec
Q 007076          470 GIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH---G--HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILP  543 (619)
Q Consensus       470 g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~---g--~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~  543 (619)
                      ..+..+...++-++ .++.|--..-..|- +..++.+...   +  ..+..|+++||+|.-+-+.|+..++|+. +|++-
T Consensus       505 ~~L~~I~~R~~vEE-lelVR~~ak~~vfv-~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiG  582 (607)
T 1nbw_A          505 GELVPIDNASPLEK-IRLVRRQAKEKVFV-TNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAG  582 (607)
T ss_dssp             TEEEEECCSSCHHH-HHHHHHHHHHHHHH-HHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEE
T ss_pred             cceeeeCCCcchHH-HHHHHHHHhhhhhh-HHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEe
Confidence            55666744433455 44444433333332 2234554332   2  1358999999999999999999999999 88764


Q ss_pred             CC
Q 007076          544 RE  545 (619)
Q Consensus       544 ~~  545 (619)
                      ..
T Consensus       583 rP  584 (607)
T 1nbw_A          583 QG  584 (607)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A

Probab=80.90  E-value=2.6  Score=47.84  Aligned_cols=63  Identities=22%  Similarity=0.419  Sum_probs=41.2

Q ss_pred             CCeEEEEEcC-CcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           54 RSVFLGVDVG-TGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        54 ~~~~lgIDiG-TTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      .+.+||||-| .|++|++++|++|+++..... |+..+     ..+    |+...+.+.+++.+.     ++..|+|++
T Consensus       328 ~~~vlg~dpg~r~g~k~a~vd~~G~~l~~~~i-y~~~~-----~~~----~~~~~~~l~~li~~~-----~~~~IaIGn  391 (785)
T 3bzc_A          328 PRATLGLDPGLRTGVKVAVVDATGKLLDTATV-YPHAP-----KNQ----WDQTLAVLAALCAKH-----QVELIAIGN  391 (785)
T ss_dssp             SCCEEEEECCSSSCEEEEEECTTSCEEEEEEE-CCSGG-----GCC----HHHHHHHHHHHHHHH-----TCCEEEEES
T ss_pred             CCeEEEECCCCcCceEEEEECCCCCEEEEEEE-ecCCc-----hhH----HHHHHHHHHHHHHHc-----CCCEEEECC
Confidence            4569999999 699999999999999987654 33111     111    333345566666653     344555544

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=80.67  E-value=1.2  Score=44.46  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=21.2

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEE
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGS   81 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~   81 (619)
                      +.+|||+|+|.+|++++ ++++++..
T Consensus        21 ~~iGIDiGsTt~K~V~~-~~~~i~~~   45 (287)
T 2ews_A           21 MKVGIDAGGTLIKIVQE-QDNQRTFK   45 (287)
T ss_dssp             CEEEEEECSSEEEEEEE-CSSCEEEE
T ss_pred             eEEEEEEChhhEEEEEE-cCCEEEEE
Confidence            58999999999999999 46777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	619
d2p3ra1	252	c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co	8e-28
d1r59o1	252	c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c	3e-27
d1r59o2	235	c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus	4e-16
d1zc6a1	114	c.55.1.5 (A:8-121) Probable N-acetylglucosamine ki	4e-10
d2hoea3	128	c.55.1.10 (A:72-199) N-acetylglucosamine kinase {T	1e-05
d2ch5a2	117	c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAG	2e-05
d1huxa_	259	c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp	0.001
d1z05a3	128	c.55.1.10 (A:81-208) Transcriptional regulator VC2	0.003
d1z6ra2	129	c.55.1.10 (A:82-210) Mlc protein {Escherichia coli	0.004

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score =  108 bits (271), Expect = 3e-27
 Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 39/280 (13%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACS 115
            + +D GT S+RA +FD +GK +GS+     Q + +   +E ++ +IW+++ + +  A  
Sbjct: 3   VMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFI 62

Query: 116 LANVDGEEVKGVGFAAT-CSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN 174
            + +  E + G+G      + V  D +       G    N IVW   ++   A+++    
Sbjct: 63  ESGIRPEAIAGIGITNQRETTVVWDKT------TGQPIANAIVWQSRQSSPIADQLKVDG 116

Query: 175 SP--VLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFR----WMDLSDWLSYRATGDDTR 228
               + +  G  +       K+ W+ +N++ +          +  +  WL ++ T     
Sbjct: 117 HTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVH 176

Query: 229 SLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAF 288
               +    T                ++    WD E  + + +        + +   V  
Sbjct: 177 VTDYSNASRT-------------MLYNIHKLEWDQEILDLLNI-------PSSMLPEVKS 216

Query: 289 PGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM 328
                G                 P+     D  A   G M
Sbjct: 217 NSEVYGH-----TRSYHFYGSEVPIAGMAGDQQAALFGQM 251

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score = 76.1 bits (186), Expect = 4e-16
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 450 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 509
           ++V+P F G  +P  D +++G + G+T  ++++       AT+Q +AY ++ +++     
Sbjct: 87  VYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVR---ATLQAVAYQSKDVIDTMKKD 143

Query: 510 -GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLI 568
            G  I  L   GG AKN L +Q  ADI+   +      E+  LGAA L  +A   +  L 
Sbjct: 144 SGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDL- 202

Query: 569 EAMKAMNAAGQVIHPSKDPKV-----KKYHDA 595
           + +K+M   GQ+  P    +      + +  A
Sbjct: 203 DELKSMAEEGQMFTPEMPAEERDNLYEGWKQA 234

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 6/111 (5%)

Query: 53  SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS 112
           S    +GVD G    R  L    G  L  A            + Q     W A+ + +++
Sbjct: 2   SIRYLIGVDGGGTGTRIRLHASDGTPLAMA------EGGASALSQGIAKSWQAVLSTLEA 55

Query: 113 ACSLANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRA 163
           A   A +              S V                  + +  D   
Sbjct: 56  AFQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQAPGFARLSLATDGYT 106

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 7/106 (6%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
            LG++V      A L D S  +L                +    +  + +   +D A  +
Sbjct: 6   VLGIEVTRDEIAACLIDASMNIL-------AHEAHPLPSQSDREETLNVMYRIIDRAKDM 58

Query: 117 ANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHR 162
               G ++  +  AA   +    G  +       S+  +   +  +
Sbjct: 59  MEKLGSKLSALTVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEK 104

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 55  SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSAC 114
           +++ GV+ G   +   L  E GK+L  A          +     +      I   V+ A 
Sbjct: 3   AIYGGVEGGGTRSEVLLVSEDGKILAEADGL-----STNHWLIGTDKCVERINEMVNRAK 57

Query: 115 SLANVD-GEEVKGVGFAAT 132
             A VD    ++ +G + +
Sbjct: 58  RKAGVDPLVPLRSLGLSLS 76

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

 Score = 39.1 bits (90), Expect = 0.001
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 495 IAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGA 553
                  ++   N     +  ++  GG+A+N        + +G  I        +  LGA
Sbjct: 191 HRSVASRVIGLANRV-GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGA 249

Query: 554 AILGAVAAKR 563
           A+     A +
Sbjct: 250 ALYAYKKAAK 259

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           FL + +G G     L +  G++L           + D  E    D+   +   ++     
Sbjct: 6   FLSMRLGRGYLTIALHELGGEVLID--------TKIDIHEIDQDDVLARLLFEIEEFFQT 57

Query: 117 ANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHR 162
                + V  +       +    G  + +         +   +   
Sbjct: 58  YAAQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKA 103

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 11/113 (9%), Positives = 30/113 (26%), Gaps = 15/113 (13%)

Query: 57  FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSL 116
           +L + +  G     L D S K        + + +  +   +    +   I + +D     
Sbjct: 6   YLSLRISRGEIFLALRDLSSK--------LVVEESQELALKDDLPLLDRIISHIDQFFIR 57

Query: 117 ANVDGEEVKGVGFAATCSLVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEK 169
                E +  +       +   +G    +              +    +  E+
Sbjct: 58  HQKKLERLTSIAITLPGIIDTENGIVHRMP-------FYEDVKEMPLGEALEQ 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	619
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	100.0
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	100.0
d2p3ra2	247	Glycerol kinase {Escherichia coli [TaxId: 562]}	100.0
d1r59o2	235	Glycerol kinase {Enterococcus casseliflavus [TaxId	100.0
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	99.24
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	99.01
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	98.91
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	98.83
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	98.71
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	98.69
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	98.66
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	98.33
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	98.27
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	98.23
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	97.6
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	97.57
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	97.37
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	97.18
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	97.14
d2i7na2	212	Pantothenate kinase 1, PANK1 {Human (Homo sapiens)	97.07
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	96.65
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	96.47
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	95.91
d1bdga1	208	Hexokinase {Blood fluke (Schistosoma mansoni) [Tax	95.77
d1e4ft1	193	Cell division protein FtsA {Thermotoga maritima [T	94.92
d1ig8a1	207	Hexokinase {Baker's yeast (Saccharomyces cerevisia	94.87
d1czan1	207	Mammalian type I hexokinase {Human (Homo sapiens)	94.78
d1czan3	205	Mammalian type I hexokinase {Human (Homo sapiens)	94.78
d1e4ft2	191	Cell division protein FtsA {Thermotoga maritima [T	94.49
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	94.39
d1v4sa1	205	Glucokinase {Human (Homo sapiens) [TaxId: 9606]}	93.74
d1zbsa2	107	Hypothetical protein PG1100 {Porphyromonas gingiva	93.72
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	92.98
d1saza1	172	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	92.4
d1t6ca1	126	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	90.48
d1nbwa2	239	ATPase domain of the glycerol dehydratase reactiva	90.25
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	90.13
d1u6za2	124	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	87.78
d2d0oa2	241	Diol dehydratase-reactivating factor large subunit	87.65
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	86.48
d2aa4a2	170	N-acetylmannosamine kinase NanK {Escherichia coli	85.47
d2e1za1	189	Propionate kinase {Salmonella typhimurium [TaxId:	84.32
d2ap1a1	186	Putative regulator protein YcfX {Salmonella typhim	80.36

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=100.00  E-value=1.4e-44  Score=362.03  Aligned_cols=238  Identities=18%  Similarity=0.359  Sum_probs=206.0

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc-
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-  132 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~-~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-  132 (619)
                      +|+||||+|||++|++|||.+|+++++.+.+++.. +++|++||||++||+++++++++++++.+....+|++|||++| 
T Consensus         1 nyvlgiDiGTtsvKa~l~D~~g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~~~~~~~~i~aI~is~~~   80 (252)
T d1r59o1           1 NYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITNQR   80 (252)
T ss_dssp             CEEEEEBCCSSBCBCCEECSSSCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTTTTCCTTSEEEEEECCCS
T ss_pred             CEEEEEEecccceeeeEEeCCCCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhhhhhcccccceEEEeCCc
Confidence            58999999999999999999999999999998865 4899999999999999999999999888888889999999998 


Q ss_pred             ccc--ccC-CCCeeeecCCCCCCccceeecccccHHHHHHHHccc--hhHHhhhCCCCCCCChHHHHHHHHHhCchhHhc
Q 007076          133 CSL--VDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM  207 (619)
Q Consensus       133 ~~~--vd~-~G~pl~~~~~~~~~~p~i~W~D~R~~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~  207 (619)
                      +++  +|+ +|+|+         +|+++|+|.|+.++++++++..  +.++++||.++++.++++||+|+++|+||+|++
T Consensus        81 ~~~v~~D~~~G~~l---------~~~i~w~D~r~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~  151 (252)
T d1r59o1          81 ETTVVWDKTTGQPI---------ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEK  151 (252)
T ss_dssp             SCCCCBCSSSCCCS---------SCCBCTTCCSSCHHHHHHHHHTCHHHHTTTTCCCSSTTSHHHHSHHHHSSSSSSSTT
T ss_pred             ceEEEEECCCCCCc---------ccccccCccchHHHHHHHHhcCCHHHHHHHHCCCCCccchHHHHHHHHHhhhHHHHH
Confidence            554  486 59999         8999999999999999998764  678899999999999999999999999999998


Q ss_pred             cce----eeechhHHHhhhcCCcc-cccccccccccccccchhhccccccccCCcCCCCCHHHHHHcCCCcccccccccc
Q 007076          208 VFR----WMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKI  282 (619)
Q Consensus       208 ~~~----~~~~~dyl~~~LTG~~~-~s~~s~~~~~~~~~~~~~~~as~tgl~d~~~~~W~~~ll~~~gi~~~l~~~lp~l  282 (619)
                      +.+    +..+++||.|+|||... .++.+.              ++.|++||+++++|++++++.+|+++.+   ||  
T Consensus       152 ~~~~~~~~~~~~~~l~~~Ltg~~~~~~d~s~--------------as~t~~~d~~~~~w~~~l~~~~gi~~~~---LP--  212 (252)
T d1r59o1         152 ADNGELLFGTIDSWLVWKLTDGQVHVTDYSN--------------ASRTMLYNIHKLEWDQEILDLLNIPSSM---LP--  212 (252)
T ss_dssp             TTTTCCBCCCHHHHHHHTSSSSCCCEECHHH--------------HTTSSSBCTTTSSBCHHHHTTTTCCSSS---SC--
T ss_pred             HHhccccccchHHHHHHHhcCCCcccccccc--------------hhhccccCcccccchHHHHHHhCCCHHH---CC--
Confidence            876    77899999999998542 334443              5578899999999999999999999754   36  


Q ss_pred             CcccccCCCccCCCccHHHHHHcCCCCCCcEEEccchHHhhhhcC
Q 007076          283 GRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGV  327 (619)
Q Consensus       283 ~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~  327 (619)
                        +++++++++|. ++++    +|++.|+||++|+||++|+++|+
T Consensus       213 --~l~~~g~~~G~-v~~~----~~l~~g~pV~~g~gD~~aa~iG~  250 (252)
T d1r59o1         213 --EVKSNSEVYGH-TRSY----HFYGSEVPIAGMAGDQQAALFGQ  250 (252)
T ss_dssp             --EECCSSSCCBC-CSS-----------SCEEEECCTTTSHHHHT
T ss_pred             --CcccCCCceEE-eChh----hcCCCCCeEEEEhHHHHHHHHhC
Confidence              78899999997 8754    58889999999999999999996

>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=100.00  E-value=2.8e-41  Score=332.75  Aligned_cols=225  Identities=22%  Similarity=0.337  Sum_probs=182.8

Q ss_pred             CeEEEEecccceeeeee-ccccccC-CccccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCH
Q 007076          348 HRMVLVCGTSTCHMAVS-RNKLFIP-GVWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSL  423 (619)
Q Consensus       348 ~~~~~~~GTs~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~  423 (619)
                      |++.++.||++.+...+ +++..++ +.+..+++ ..++  .|.++|.++++|.+++|+++++....             
T Consensus         4 G~~k~T~GTg~~v~~~tg~~~~~~~~gll~t~~~-~~~~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~-------------   69 (235)
T d1r59o2           4 GMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY-GINGKVYYALEGSIFVAGSAIQWLRDGLRMIE-------------   69 (235)
T ss_dssp             TCBCCEESSSEECEEECTTSCCCCSSSCEEEECC-CSSSCCCEEEECCCSCSSHHHHHTTTTSCSSS-------------
T ss_pred             CCeEeccccceEEEEecCCccccCCCCcEEEEEE-EeCCccEEEeHHHHHHHHHHHHHHHhhhhccc-------------
Confidence            57778899998776655 4454444 33333332 2333  69999999999999999998875321             


Q ss_pred             HHHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCCCCCCCcEeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007076          424 FELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIV  503 (619)
Q Consensus       424 ~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~~d~~a~g~~~Gl~~~~~~~~l~~~~rAvlEgiaf~~~~~l  503 (619)
                      ++.....+..         .++++++++|+|||.|+|+|+||+++||+|+||+.+|++.||+   ||++|||||++|+++
T Consensus        70 ~~~~~~~~~~---------~~~~~~g~~flP~~~G~~~P~~~~~arg~~~Gl~~~~~~~~l~---rAvlEgiaf~~~~~~  137 (235)
T d1r59o2          70 TSPQSEELAA---------KAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFV---RATLQAVAYQSKDVI  137 (235)
T ss_dssp             SGGGGTTTTS---------SSSSCSSCEEECCTTCCCTTTCCSSCCCEEESCCTTCCHHHHH---HHHHHHHHHHHHHHH
T ss_pred             chhhhccccc---------ccCCCCcceeeehhhhccccccCCCcceeEeecccCCCHHHHH---HHHHHHHHHHHHHHH
Confidence            1111111111         1358999999999999999999999999999999999999975   599999999999999


Q ss_pred             HHHHh-CCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCCCccchHHHHHHHhhccccCCHHHHHHHhhcCCeEEc
Q 007076          504 EHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIH  582 (619)
Q Consensus       504 ~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e~~alGAAllA~~~~G~~~~~~~a~~~~~~~~~~~~  582 (619)
                      +.|++ .|.++++|+++||+++|++|+|++||++|+||+++...|++++|||++|++++|.|++++++ .++.+..++|+
T Consensus       138 e~~~~~~g~~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~e~~alGaA~la~~~~G~~~~~~~~-~~~~~~~~~~~  216 (235)
T d1r59o2         138 DTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFT  216 (235)
T ss_dssp             HHHHHHHCCCCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCCCTTTHHHHHHHHHHHTSSSSSTTS-GGGCCEEEEEC
T ss_pred             HHHHHhcCCCCcEEEecCcchhCHHHHhhhhhccceeeeeccccchHHHHHHHHHHHHcCCCCCHHHH-HhccCCCcEEc
Confidence            99987 58899999999999999999999999999999999999999999999999999999999874 56777788999


Q ss_pred             CCCChhhHHHHHHHHHHHHH
Q 007076          583 PSKDPKVKKYHDAKYLIFRE  602 (619)
Q Consensus       583 P~~~~~~~~~y~~~y~~y~~  602 (619)
                      |  +.+. +.|+++|++|++
T Consensus       217 P--~~~~-~~~~~~Y~~wkk  233 (235)
T d1r59o2         217 P--EMPA-EERDNLYEGWKQ  233 (235)
T ss_dssp             C--CSTT-SSHHHHHTTTTT
T ss_pred             C--CCCH-HHHHHHHHHHHh
Confidence            9  5554 347889988875

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.24  E-value=2.1e-11  Score=104.28  Aligned_cols=99  Identities=17%  Similarity=0.292  Sum_probs=74.3

Q ss_pred             CCeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEE----EEEE
Q 007076           54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVK----GVGF  129 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~----aIgi  129 (619)
                      |+|+||||+|+|++|++|+|++|+++.+.+.+      +++.+++++++|+.+.+++++++++.+....++.    ++|+
T Consensus         3 m~y~lGID~GGT~tk~~l~d~~G~il~~~~~~------~~~~~~~~~~~~~~i~~~i~~~~~~ag~~~~~~~~~~~~~g~   76 (114)
T d1zc6a1           3 IRYLIGVDGGGTGTRIRLHASDGTPLAMAEGG------ASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGL   76 (114)
T ss_dssp             CCEEEEEEECSSCEEEEEEETTCCEEEEEEES------CCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEE
T ss_pred             ccEEEEEEcCcceEEEEEEcCCCCEEEEEEcc------CCCcccCHHHHHHHHHHHHHHHHHHcCCChhhhceeEEEEEe
Confidence            46999999999999999999999999876543      3456899999999999999999999887766653    3444


Q ss_pred             cCcc--c---cccCCCCeeeecCCCCCCccceeecccccHHHH
Q 007076          130 AATC--S---LVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQA  167 (619)
Q Consensus       130 s~~~--~---~vd~~G~pl~~~~~~~~~~p~i~W~D~R~~~~~  167 (619)
                      ++..  .   .+.+...++         .|+..++|.+++...
T Consensus        77 aG~~~~~~~~~l~~~~~~~---------~~v~v~nDa~~A~~g  110 (114)
T d1zc6a1          77 SGVHNRQWAGEFESQAPGF---------ARLSLATDGYTTLLG  110 (114)
T ss_dssp             SCCCTTSHHHHHHHTCCCC---------SEEEEECHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHhCCCC---------CeEEEECHHHHHHHH
Confidence            4421  1   112333344         688999999876543

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=5.5e-10  Score=95.60  Aligned_cols=74  Identities=22%  Similarity=0.375  Sum_probs=61.7

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      +||||||+|++|++++|.+|+++.+.+.+++        +.+++.+.+.+.++++++..+.    ..+.+|||+. +|++
T Consensus         2 yiGiDiGgT~i~~~l~d~~g~i~~~~~~~t~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~~igi~~-pG~v   68 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDSTRRLQWEKRVPTP--------HTSYSAFLDAVCELVEEADQRF----GVKGSVGIGI-PGMP   68 (117)
T ss_dssp             EEEEEECSSEEEEEEEETTCCEEEEEEEECC--------CSCHHHHHHHHHHHHHHHHHHH----TSCCEEEEEE-SSBS
T ss_pred             EEEEEECcceEEEEEEeCCCCEEEEEEEeec--------ccCHHHHHHHHHHHHHHHHhhc----CcceeEEEec-CCcc
Confidence            7999999999999999999999998888765        4578899999999999888764    3456788865 7889


Q ss_pred             cCC-CCee
Q 007076          137 DAD-GSPV  143 (619)
Q Consensus       137 d~~-G~pl  143 (619)
                      |.+ |..+
T Consensus        69 d~~~g~i~   76 (117)
T d2ap1a2          69 ETEDGTLY   76 (117)
T ss_dssp             CCTTSCCB
T ss_pred             ccccceee
Confidence            876 6544

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=2.1e-09  Score=93.42  Aligned_cols=93  Identities=17%  Similarity=0.260  Sum_probs=75.4

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS  134 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~  134 (619)
                      .|+||||+|.|+++++++|.+|+++.+.+.+++       ...+++.+.+.+.++++++++..+....++.+|||+. +|
T Consensus         4 ~~~igidig~~~i~~~l~d~~G~il~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi~~-pG   75 (128)
T d2hoea3           4 AYVLGIEVTRDEIAACLIDASMNILAHEAHPLP-------SQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAA-PG   75 (128)
T ss_dssp             CEEEEEEECSSEEEEEEEETTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEE-SS
T ss_pred             EEEEEEEECCCEEEEEEEcCCCCEEEEEEEecc-------cCCCHHHHHHHHHHHHHHHHHHhccccCceEEEecce-ee
Confidence            589999999999999999999999998888876       3578889999999999888876655678899999976 88


Q ss_pred             cccCC-CCeeeecCCCCCCccceeeccccc
Q 007076          135 LVDAD-GSPVSVSWNGDSRRNIIVWMDHRA  163 (619)
Q Consensus       135 ~vd~~-G~pl~~~~~~~~~~p~i~W~D~R~  163 (619)
                      +||.+ |..+.        .|.+.|.|-.-
T Consensus        76 ~vd~~~g~i~~--------~~~l~w~~~~l   97 (128)
T d2hoea3          76 PIDTERGIIID--------PRNFPLSQIPL   97 (128)
T ss_dssp             CEETTTTEECC--------CSSCTTBTSCH
T ss_pred             eEcCCCCEEEe--------eccccccCCch
Confidence            99876 66554        34555666543

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=98.83  E-value=1.3e-08  Score=88.03  Aligned_cols=90  Identities=16%  Similarity=0.214  Sum_probs=73.5

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      ++||||||.++++++++|.+|+++.+.+.+++        +.+++++++.+.+.+++++++.+....+|.+|||+. +|+
T Consensus         5 ~~lgi~ig~~~i~~~l~d~~G~il~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgi~~-pG~   75 (128)
T d1z05a3           5 QFLSMRLGRGYLTIALHELGGEVLIDTKIDIH--------EIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITL-PGL   75 (128)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEEEEEECC--------CCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEE-SSE
T ss_pred             EEEEEEECCCEEEEEEEcCCCCEEEEEEeccc--------cCCHHHHHHHHHHHHHHHHHHcccccccceEEEeee-eee
Confidence            58999999999999999999999998887776        556788899999999999998877778899999976 888


Q ss_pred             ccCC-CCeeeecCCCCCCccceeecccc
Q 007076          136 VDAD-GSPVSVSWNGDSRRNIIVWMDHR  162 (619)
Q Consensus       136 vd~~-G~pl~~~~~~~~~~p~i~W~D~R  162 (619)
                      +|.+ +....        .|.+.|.+..
T Consensus        76 vd~~~~~~~~--------~~~~~~~~~~   95 (128)
T d1z05a3          76 VNSEQGIVLQ--------MPHYNVKNLA   95 (128)
T ss_dssp             EETTTTEEEE--------CSSSBCSSBC
T ss_pred             eeccceeeec--------cccCCCCCcc
Confidence            9876 44332        3444566544

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.3e-08  Score=88.33  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcccc
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL  135 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~  135 (619)
                      ++||||+|.++++++++|.+|+++.+.+.+++        ..+++++.+.+.+.+++++++.+....+|.+|||+. +|.
T Consensus         5 ~~l~i~i~~~~i~~~l~Dl~G~~l~~~~~~~~--------~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~gIgi~~-pG~   75 (129)
T d1z6ra2           5 HYLSLRISRGEIFLALRDLSSKLVVEESQELA--------LKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITL-PGI   75 (129)
T ss_dssp             EEEEEEEETTEEEEEEEETTCCEEEEEEEECC--------SSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEE-SSE
T ss_pred             EEEEEEECCCEEEEEEEcCCCCEEEEEEeecc--------ccchhHHHHHHHHHHHHHHHhcCcccccceeEEEee-eee
Confidence            69999999999999999999999998888776        455677888888999999888766678999999976 888


Q ss_pred             ccCC-CCeee
Q 007076          136 VDAD-GSPVS  144 (619)
Q Consensus       136 vd~~-G~pl~  144 (619)
                      +|.+ |....
T Consensus        76 v~~~~~~~~~   85 (129)
T d1z6ra2          76 IDTENGIVHR   85 (129)
T ss_dssp             EETTTTEEEE
T ss_pred             eeecccceec
Confidence            9776 55443

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=1.1e-08  Score=87.57  Aligned_cols=72  Identities=18%  Similarity=0.286  Sum_probs=55.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      +||||||+|++|++++|.+|+++.+.+.+++       .+++++.+.+.+.++++++       ..++.+|||+. +|++
T Consensus         3 ~lgiDiGgT~i~~~l~d~~G~i~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~-------~~~~~~igI~~-pG~v   67 (119)
T d2aa4a1           3 TLAIDIGGTKLAAALIGADGQIRDRRELPTP-------ASQTPEALRDALSALVSPL-------QAHAQRVAIAS-TGII   67 (119)
T ss_dssp             EEEEEECSSEEEEEEECTTCCEEEEEEEECC-------SSCCHHHHHHHHHHHHTTT-------GGGCSEEEEEE-SSEE
T ss_pred             EEEEEeCcCEEEEEEEcCCCCEEEeEEEecc-------ccCcHHHHHHHHHHHHHHh-------hccCceEEEEe-eeeE
Confidence            8999999999999999999999998888876       4677777776665555443       23567888876 7888


Q ss_pred             cCC-CCee
Q 007076          137 DAD-GSPV  143 (619)
Q Consensus       137 d~~-G~pl  143 (619)
                      |.+ +..+
T Consensus        68 ~~~~~~~~   75 (119)
T d2aa4a1          68 RDGSLLAL   75 (119)
T ss_dssp             ETTEEECS
T ss_pred             cCCCcEEE
Confidence            776 4433

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.66  E-value=4.4e-08  Score=83.09  Aligned_cols=69  Identities=19%  Similarity=0.315  Sum_probs=51.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      +++||||+|++|++++|.+|+++.+.+.+++         .+.++++    +.+.+.++     ..++.+|||+. +|+|
T Consensus         3 i~~iDiGgT~i~~~l~d~~g~i~~~~~~~t~---------~~~~~~~----~~i~~~~~-----~~~i~gIGi~~-pG~v   63 (114)
T d2gupa1           3 IATIDIGGTGIKFASLTPDGKILDKTSISTP---------ENLEDLL----AWLDQRLS-----EQDYSGIAMSV-PGAV   63 (114)
T ss_dssp             EEEEEEETTEEEEEEECTTCCEEEEEEECCC---------SSHHHHH----HHHHHHHT-----TSCCSEEEEEE-SSEE
T ss_pred             EEEEEeCcccEEEEEEcCCCCEEEEEEEccc---------ccHHHHH----HHHHHHhh-----hcccceEEEec-cccc
Confidence            8999999999999999999999987776654         2334444    34444443     25789999976 8999


Q ss_pred             cCC-CCeee
Q 007076          137 DAD-GSPVS  144 (619)
Q Consensus       137 d~~-G~pl~  144 (619)
                      |.+ |....
T Consensus        64 d~~~g~i~~   72 (114)
T d2gupa1          64 NQETGVIDG   72 (114)
T ss_dssp             CTTTCBEES
T ss_pred             cCCccEEEc
Confidence            877 76553

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=98.33  E-value=7e-07  Score=76.95  Aligned_cols=76  Identities=20%  Similarity=0.353  Sum_probs=56.1

Q ss_pred             CeEEEEEcCCcceEEEEEcCC-CCEEEE-EEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCc
Q 007076           55 SVFLGVDVGTGSARAGLFDES-GKLLGS-ASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT  132 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~-g~il~~-~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~  132 (619)
                      .++||||||.|++|++++|.+ |+++.+ .+.+++       ...+++.+.+.+.+.++++.++.. ...++.+|||+. 
T Consensus         2 ~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~-------~~~~~~~~~~~i~~~~~~l~~~~~-~~~~~~gIGi~~-   72 (129)
T d1woqa1           2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTP-------QPATPESVAEAVALVVAELSARPE-APAAGSPVGVTF-   72 (129)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECC-------SSCCHHHHHHHHHHHHHHHHTSTT-CCCTTCCEEEEE-
T ss_pred             CCEEEEEECcceEEEEEEECCCCEEEEEEeecccc-------cCCCHHHHHHHHHHHHHHHHhccc-cccccceeeecc-
Confidence            459999999999999999965 565543 345554       355688899999999888765432 335677888865 


Q ss_pred             cccccCC
Q 007076          133 CSLVDAD  139 (619)
Q Consensus       133 ~~~vd~~  139 (619)
                      +|++|..
T Consensus        73 pG~vd~~   79 (129)
T d1woqa1          73 PGIIQHG   79 (129)
T ss_dssp             SSCEETT
T ss_pred             eeeEecC
Confidence            7888754

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=1.7e-06  Score=73.38  Aligned_cols=63  Identities=16%  Similarity=0.266  Sum_probs=45.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCccccc
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLV  136 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v  136 (619)
                      ++|||||+|++|++++|.+|+++...+.|++          .+++..+.+.+.    +++     .++.+|||+. +|++
T Consensus         2 ~~giDiGgT~i~~~l~d~~g~i~~~~~~~t~----------~~~~~~~~i~~~----~~~-----~~~~~igi~~-~G~v   61 (118)
T d1xc3a1           2 LGGIEAGGTKFVCAVGREDGTIIDRIEFPTK----------MPDETIEKVIQY----FSQ-----FSLQAIGIGS-FGPV   61 (118)
T ss_dssp             EEEEEECSSEEEEEEECTTSCEEEEEEEECC----------CHHHHHHHHHHH----HTT-----SCCSEEEEEE-CSSB
T ss_pred             EEEEEeccCEEEEEEEcCCCCEEEEEEecCC----------CHHHHHHHHHHH----Hhh-----ccceecceeE-Eeee
Confidence            7999999999999999999999987766543          355555444333    332     3577888865 6777


Q ss_pred             cCC
Q 007076          137 DAD  139 (619)
Q Consensus       137 d~~  139 (619)
                      |.+
T Consensus        62 ~~~   64 (118)
T d1xc3a1          62 DND   64 (118)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            554

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.1e-06  Score=72.76  Aligned_cols=71  Identities=23%  Similarity=0.266  Sum_probs=56.1

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCC-CCEEEEEEc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDG-EEVKGVGFA  130 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~-~~I~aIgis  130 (619)
                      ++++|||-|+|++|++|+|++|+++.+.+.+-..     ......+++++.+.+.+++++++.+... .+|.+|+++
T Consensus         3 ~~~~GIDgGGTkT~~~l~d~~G~~l~~~~~g~~N-----~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~i~~i~~G   74 (117)
T d2ch5a2           3 AIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTN-----HWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLS   74 (117)
T ss_dssp             CEEEEEEECTTCEEEEEEETTSCEEEEEEECCCC-----HHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEE
T ss_pred             cEEEEEEcChhhEEEEEECCCCCEEEEEEcCCCC-----cchhhHHHHHHHHHHHHHHHHHHhcCCCCccccEEEEE
Confidence            6899999999999999999999999877654321     1356788899999999999998776543 367776664

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=5.3e-05  Score=62.86  Aligned_cols=28  Identities=32%  Similarity=0.270  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEE
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSA   82 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~   82 (619)
                      +|+|++|||+|++|++++|.++.++...
T Consensus         2 ~~~L~~DIGGTn~r~alv~~~~~~l~~~   29 (110)
T d1q18a1           2 KYALVGDVGGTNARLALCDIASGEISQA   29 (110)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEE
T ss_pred             cEEEEEEECchhEEEEEEEcCCCeEEEE
Confidence            6899999999999999999876655443

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=3.4e-05  Score=76.46  Aligned_cols=67  Identities=22%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             CeEEEEEcCCcceEEEEEcCCCCEEEEEE-eecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCcc
Q 007076           55 SVFLGVDVGTGSARAGLFDESGKLLGSAS-SPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC  133 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g~il~~~~-~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~  133 (619)
                      ||+|+||||+|++|++++|.++.++...+ .+++          +.+.    +.+.|++++++.+   .++.+|||+. +
T Consensus         1 ~y~L~~DIGGT~ir~glvd~~~~~i~~~~~~~~~----------~~~~----~~~~i~~~~~~~~---~~~~~igI~~-p   62 (319)
T d1sz2a1           1 KYALVGDVGGTNARLALCDIASGEISQAKTYSGL----------DYPS----LEAVIRVYLEEHK---VEVKDGCIAI-A   62 (319)
T ss_dssp             CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG----------GCSC----HHHHHHHHHHHSC---CCCCEEEEEE-S
T ss_pred             CEEEEEEEChhheeeEEEECCCCEEEEEEEeCCC----------CHhH----HHHHHHHHHHhcC---CCcceEEEEc-c
Confidence            68999999999999999997765554433 3322          1122    3445666666643   4688888876 7


Q ss_pred             ccccCC
Q 007076          134 SLVDAD  139 (619)
Q Consensus       134 ~~vd~~  139 (619)
                      |+||.+
T Consensus        63 G~vd~~   68 (319)
T d1sz2a1          63 CPITGD   68 (319)
T ss_dssp             SCCCSS
T ss_pred             cCCCCC
Confidence            888776

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.37  E-value=9.5e-05  Score=70.39  Aligned_cols=66  Identities=18%  Similarity=0.152  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecCCC-CccchHHHHHHHh
Q 007076          490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAILGAV  559 (619)
Q Consensus       490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~-e~~alGAAllA~~  559 (619)
                      ..++.+.-.+   +..+... ..++.|++.||.++|+.+.+.+.+.++.+|.++... +++|+|||++|..
T Consensus       189 ~~~~~~~~~~---~~~~~~~-~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~  255 (259)
T d1huxa_         189 GIHRSVASRV---IGLANRV-GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK  255 (259)
T ss_dssp             HHHHHHHHHH---HHHHHTT-CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHHhc-cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence            4444444333   3333332 356789999999999999999999999999998844 4779999999975

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=97.18  E-value=0.00024  Score=65.38  Aligned_cols=77  Identities=23%  Similarity=0.300  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI  555 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAl  555 (619)
                      +++++..+.+-+++.+.-.+.   +.+++.+.   .++.|.++||.++.|.+.+.+.+.|+.++.+.. ..++.|.|||+
T Consensus       116 tr~~~~~~~~~~~~~~~~~i~---~~l~~a~~~~~~Id~v~lvGG~sr~p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~  192 (198)
T d1dkgd2         116 TRAKLESLVEDLVNRSIELLK---VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAV  192 (198)
T ss_dssp             EHHHHHHHSHHHHHHHHHHHH---HHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHH---HHHHHhCCChhHCcEEEEEcCccCCHHHHHHHHHHHCCCCCCCCChHHHHHHHHHH
Confidence            567765444444444332222   34444443   578999999999999999999999998876544 55688999999


Q ss_pred             HHHh
Q 007076          556 LGAV  559 (619)
Q Consensus       556 lA~~  559 (619)
                      .|+.
T Consensus       193 ~aa~  196 (198)
T d1dkgd2         193 QGGV  196 (198)
T ss_dssp             HTTT
T ss_pred             HHHh
Confidence            8764

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.14  E-value=0.00029  Score=64.50  Aligned_cols=80  Identities=16%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhhC-Cceeec-CCCCccchHHHHHH
Q 007076          480 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILP-RENESVLLGAAILG  557 (619)
Q Consensus       480 ~~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~~-~~~e~~alGAAllA  557 (619)
                      ++.++..+.+-+++.+.-.+++.++.......+++.|.++||.++.|.+.+.+++.|+ .++... +..++.|.|||+.|
T Consensus       110 tr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~a  189 (193)
T d1bupa2         110 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA  189 (193)
T ss_dssp             EHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHH
Confidence            3566654444555555444444443322112357899999999999999999999995 677654 45668899999998


Q ss_pred             Hh
Q 007076          558 AV  559 (619)
Q Consensus       558 ~~  559 (619)
                      +.
T Consensus       190 a~  191 (193)
T d1bupa2         190 AI  191 (193)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Pantothenate kinase 1, PANK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0022  Score=59.20  Aligned_cols=145  Identities=17%  Similarity=0.094  Sum_probs=85.1

Q ss_pred             CeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhccCCCCccCCCCceEEcccCCCCCCCC
Q 007076          384 KFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI  463 (619)
Q Consensus       384 ~~y~~~g~~~~~G~~l~W~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G~r~P~  463 (619)
                      +.|-..|++..+|.++.=+...+.            +...++++++++++=.+. .+        . +-+|...|....+
T Consensus        47 ~~~~~iggT~~gGgtf~gla~lLl------------g~~~~~eI~klA~~G~~~-~~--------d-l~~~di~~~~~s~  104 (212)
T d2i7na2          47 DNYKRVTGTSLGGGTFLGLCCLLT------------GCETFEEALEMAAKGDST-NV--------D-KLVKDIYGGDYER  104 (212)
T ss_dssp             TEEEEEEEESCSHHHHHHHHHHHH------------CCCSHHHHHHHHHHCCGG-GT--------S-EEHHHHHSSCBGG
T ss_pred             CceEEecCCcccHHHHHHHHHHhc------------CCCCHHHHHHHHhcCCcc-cc--------C-ccCCCcCCCCCCc
Confidence            445555666678887766655442            345567777776542110 11        1 3344444432211


Q ss_pred             --CCCCCcEeEEcCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCcCEEEEecCCcCCHHHHHH-HH
Q 007076          464 --ADPKSKGIICGMT------LDSSEKQLALLYLATVQGIAYGTRHIVEHC-NAHGHKIDTLLACGGLAKNPLFLQQ-HA  533 (619)
Q Consensus       464 --~d~~a~g~~~Gl~------~~~~~~~l~~~~rAvlEgiaf~~~~~l~~l-~~~g~~~~~I~~~GG~a~s~~~~Qi-~A  533 (619)
                        -..+...+.+|-.      .+.+++|+++   ++++.++..+-+..... +..  .+++|+++||.+.|..+++. ++
T Consensus       105 sgL~t~~~a~~fgk~~~~~~~~~~~~~Diaa---S~q~~v~~~l~~~a~~aa~~~--~~k~iv~~Ggv~aN~~lr~~l~~  179 (212)
T d2i7na2         105 FGLQGSAVASSFGNMMSKEKRDSISKEDLAR---ATLVTITNNIGSIARMCALNE--NIDRVVFVGNFLRINMVSMKLLA  179 (212)
T ss_dssp             GTBCTTSEEETTTTTTSHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH--TCCCEEEESGGGCSSSHHHHHHH
T ss_pred             ccCCHHHHHHHhhhhhhccccccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHc--CCCEEEEECcHhhCHHHHHHHHH
Confidence              2344555555532      2335678765   99999988887765433 333  46799999998877666544 43


Q ss_pred             hh---h---CCceeecCCC-CccchHHHH
Q 007076          534 DI---I---GCPIILPREN-ESVLLGAAI  555 (619)
Q Consensus       534 dv---l---g~pV~~~~~~-e~~alGAAl  555 (619)
                      .+   +   +..+..++.. -++|+||++
T Consensus       180 ~~~~~~~~~~i~~~Fp~~~~y~galGA~l  208 (212)
T d2i7na2         180 YAMDFWSKGQLKALFLEHEGYFGAVGALL  208 (212)
T ss_dssp             HHHHHHTTTSCCEEEETTTTCHHHHHHHH
T ss_pred             HHHHHHhhCCceEEecCChhhhHHHHHHH
Confidence            32   2   6777777754 478999765

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.65  E-value=0.0016  Score=61.49  Aligned_cols=48  Identities=13%  Similarity=0.342  Sum_probs=36.7

Q ss_pred             eEEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHH
Q 007076           56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS  112 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~  112 (619)
                      |+||||+|+|++|++++|++|+++.+.+.++.         .+++...+.+.+.+++
T Consensus         3 ~~lGIDiGGT~~k~~vvd~~g~il~~~~~~t~---------~~~~~~~~~i~~~l~~   50 (259)
T d1huxa_           3 YTLGIDVGSTASKCIILKDGKEIVAKSLVAVG---------TGTSGPARSISEVLEN   50 (259)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEEECC---------SSCCHHHHHHHHHHHH
T ss_pred             EEEEEEeCcceEEEEEEcCCCcEEEEEEecCC---------CCHHHHHHHHHHHHHH
Confidence            69999999999999999999999988776653         2345555555555544

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.00053  Score=62.22  Aligned_cols=75  Identities=15%  Similarity=0.071  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcCEEEEecCCcCCHHHHHHHHhhhCCceeecC-CCCccchHHHHHH
Q 007076          483 QLALLYLATVQGIAYGTRHIVEHCNAH---GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILG  557 (619)
Q Consensus       483 ~l~~~~rAvlEgiaf~~~~~l~~l~~~---g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~e~~alGAAllA  557 (619)
                      .+..+...+++-+...+...++.....   ....+.|+++||+|+-|.+.+++++.||+||.+.. ..++.|+|||+.+
T Consensus       105 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~  183 (196)
T d1jcea2         105 EVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVL  183 (196)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHH
Confidence            333333455555554444444432211   11245699999999999999999999999998875 5568899999853

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.91  E-value=0.0041  Score=58.47  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCC-cCCHHHHHHHHhhh---CCceeecCCCC-ccchHHHH
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL-AKNPLFLQQHADII---GCPIILPRENE-SVLLGAAI  555 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~-a~s~~~~Qi~Advl---g~pV~~~~~~e-~~alGAAl  555 (619)
                      ..+.+.   +++|.++..+...+..+... ..+++|++.||+ +.++.+.+.+.+.+   +..+..++..+ +.|+|||+
T Consensus       189 ~~~~a~---~~~~~~~~~l~~~~~~~~~~-~~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~  264 (267)
T d2ewsa1         189 PSNKLA---AVIGVVGEVVTTMAITVARE-FKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALY  264 (267)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHH-TTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHH
T ss_pred             hhhhHH---HHHHHHHHHHHHHHHHHHhh-cCCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHH
Confidence            445543   67777777766665555432 345789999986 46899999999886   55666766444 77999998


Q ss_pred             HH
Q 007076          556 LG  557 (619)
Q Consensus       556 lA  557 (619)
                      ||
T Consensus       265 L~  266 (267)
T d2ewsa1         265 LE  266 (267)
T ss_dssp             TC
T ss_pred             hc
Confidence            75

>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=95.77  E-value=0.024  Score=51.55  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             CeEEEEEcCCcceEEEEEcCCC--CE--EEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           55 SVFLGVDVGTGSARAGLFDESG--KL--LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g--~i--l~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      .-+|+||+|+|++|+++++..|  +.  +.....++|..    ....+.+++|+.+.++|.+.+++.+... +..-+|++
T Consensus        66 G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~ip~~----~~~~~~~~lFd~iA~~i~~fl~~~~~~~-~~l~lGfT  140 (208)
T d1bdga1          66 GNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAE----KMSGSGTELFKYIAETLADFLENNGMKD-KKFDLGFT  140 (208)
T ss_dssp             EEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTT----TTTSBHHHHHHHHHHHHHHHHHHTTCCS-SCEEEEEE
T ss_pred             ceEEEEEecCceEEEEEEEecCCCcceEEEEEEeeCCHH----HccCCHHHHHHHHHHHHHHHHHhcCCCC-CccccEEE
Confidence            3589999999999999999654  32  22222333311    1234578999999999999998765433 33446775


Q ss_pred             C
Q 007076          131 A  131 (619)
Q Consensus       131 ~  131 (619)
                      -
T Consensus       141 F  141 (208)
T d1bdga1         141 F  141 (208)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.92  E-value=0.043  Score=49.29  Aligned_cols=76  Identities=7%  Similarity=0.056  Sum_probs=53.0

Q ss_pred             CeEEEEEcCCcceEEEEEc-CCC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFD-ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d-~~g--~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      .|+.+|||||+++|++++. .++  +++.....+..-. ..| .-.|.+..-+++.++++++-++++........+++++
T Consensus         2 ~~~~aiDIGs~kI~~~v~~~~~~~~~iig~~~~~s~Gi-~~G-~I~d~~~~~~~I~~~I~~aE~~a~~~i~~~v~v~~~~   79 (193)
T d1e4ft1           2 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGL-DEG-EIKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSS   79 (193)
T ss_dssp             EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSE-ETT-EESCHHHHHHHHHHHHHHHHHHHTSCCCSCEEEEECC
T ss_pred             cEEEEEEcCCCEEEEEEEEEcCCcEEEEEEEEEecCCc-cCC-eEEeHHHHHHHHHHHHHHHHHHcCCCeeeEEEEEEcC
Confidence            4789999999999999886 344  4556555554311 223 3468999999999999998887775443334567765


Q ss_pred             c
Q 007076          132 T  132 (619)
Q Consensus       132 ~  132 (619)
                      .
T Consensus        80 ~   80 (193)
T d1e4ft1          80 V   80 (193)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]

Probab=94.87  E-value=0.035  Score=50.45  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=48.1

Q ss_pred             eEEEEEcCCcceEEEEEcCCCC-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEEcC
Q 007076           56 VFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFAA  131 (619)
Q Consensus        56 ~~lgIDiGTTsiKa~l~d~~g~-il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~-~~~~I~aIgis~  131 (619)
                      -+++||+|+|+.|+++++..|+ .....+..+.+. ..-....+.+++|+.+.++|.+.+++... ...+..-+|++-
T Consensus        64 ~flalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip-~~~~~~~~~~~lFd~iA~~i~~f~~e~~~~~~~~~l~lGfTF  140 (207)
T d1ig8a1          64 DFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYRLP-DAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPIPLGFTF  140 (207)
T ss_dssp             EEEEEEECSSEEEEEEEEEESSSCEEEEEEEEECC-TTGGGCSCTHHHHHHHHHHHHHHHHHHCTTCCCSCEEEEEEC
T ss_pred             eEEEEEecCceEEEEEEEEcCCCceEEeeeeeeCC-HHHhcCCcHHHHHHHHHHHHHHHHHHhcccccCCcceeEEEE
Confidence            4899999999999999996542 222223222211 11012345788999999999999886432 234445577764

>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.013  Score=53.35  Aligned_cols=73  Identities=14%  Similarity=0.204  Sum_probs=45.7

Q ss_pred             CeEEEEEcCCcceEEEEEcCCC--C-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           55 SVFLGVDVGTGSARAGLFDESG--K-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~g--~-il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      ..+++||+|+|+.|++++...|  . .+...+..+++-.  .......+++|+.+.++|.+.+++.+... ...-+|++
T Consensus        63 G~flalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~ip~--~~~~~~~~~lFd~IA~~i~~fl~~~~~~~-~~l~lGfT  138 (207)
T d1czan1          63 GDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPE--NIVHGSGSQLFDHVAECLGDFMEKRKIKD-KKLPVGFT  138 (207)
T ss_dssp             EEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCH--HHHSSBHHHHHHHHHHHHHHHHHHHTCTT-SCCCEEEE
T ss_pred             ceEEEEecCCceEEEEEEEeCCCCCccEEEEEEeecCCH--HHhcCCHHHHHHHHHHHHHHHHHhcCcCC-CCCccEEE
Confidence            3589999999999999998532  2 3332222232110  01233568899999999999988654322 22335664

>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.019  Score=52.15  Aligned_cols=74  Identities=18%  Similarity=0.262  Sum_probs=47.0

Q ss_pred             CeEEEEEcCCcceEEEEEcC--CCC-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDE--SGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~--~g~-il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      .-+|+||+|+|+.|+++++.  +++ .+...+..+++-..  ...-..+++++.+.++|.+.++..+.... -.-+|++-
T Consensus        61 G~fLalDlGGTn~Rv~~V~L~g~~~~~~~~~~~~~~ip~~--~~~~~~~eLFd~iA~~i~~fl~~~~~~~~-~~~lGfTF  137 (205)
T d1czan3          61 GDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIE--IMQGTGEELFDHIVSCISDFLDYMGIKGP-RMPLGFTF  137 (205)
T ss_dssp             EEEEEEEESSSSEEEEEEEEECSTTCEEEEEEEEECCCHH--HHTSBHHHHHHHHHHHHHHHHHHHTCCSS-CCEEEEEE
T ss_pred             ceEEEEEecCceEEEEEEEecCCCCceEEEEeeeecCCHH--HhcCCHHHHHHHHHHHHHHHHHhcCCCCC-cccceEEE
Confidence            45899999999999999884  332 33333332321100  11224588999999999999987654333 23466653

>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.027  Score=50.69  Aligned_cols=62  Identities=19%  Similarity=0.305  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C--CCcCEEEEecCCcCCHHHHHHHHhhhCCceee
Q 007076          481 EKQLALLYLATVQGIAYGTRHIVEHCNAH----G--HKIDTLLACGGLAKNPLFLQQHADIIGCPIIL  542 (619)
Q Consensus       481 ~~~l~~~~rAvlEgiaf~~~~~l~~l~~~----g--~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~  542 (619)
                      +..+..++++.++-++-.+++.++.+...    +  ..+..|+++||+|+-+-+.++++++||+||++
T Consensus        92 ~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri  159 (191)
T d1e4ft2          92 AKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRT  159 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhhHHHHHHHHHCCCeEE
Confidence            45666677888888887777777766431    1  12446999999999999999999999999975

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.39  E-value=0.054  Score=46.44  Aligned_cols=31  Identities=32%  Similarity=0.556  Sum_probs=27.2

Q ss_pred             CCeEEEEEcC-CcceEEEEEcCCCCEEEEEEe
Q 007076           54 RSVFLGVDVG-TGSARAGLFDESGKLLGSASS   84 (619)
Q Consensus        54 ~~~~lgIDiG-TTsiKa~l~d~~g~il~~~~~   84 (619)
                      .+.+||||=| .|++|.+++|++|+++.....
T Consensus         4 ~~~vlg~DPg~r~gck~AvlD~~G~vld~~vi   35 (149)
T d3bzka5           4 PRATLGLDPGLRTGVKVAVVDATGKLLDTATV   35 (149)
T ss_dssp             SCCEEEEECCSTTCEEEEEECTTSCEEEEEEE
T ss_pred             CceEEEECCCcccccEEEEECCCCCEEEEEEE
Confidence            4569999999 899999999999999986544

>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Glucokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.084  Score=47.74  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=46.7

Q ss_pred             CeEEEEEcCCcceEEEEEcCC-C---C-EEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007076           55 SVFLGVDVGTGSARAGLFDES-G---K-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF  129 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~~-g---~-il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi  129 (619)
                      .-+++||+|+|+.|+++++.. +   . .+...+..+++ +. .......+++|+.+.++|.+.+++.... +.-.-+|+
T Consensus        59 G~flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~i-p~-~~~~~t~~~LFd~iA~~i~~fl~~~~~~-~~~lplGf  135 (205)
T d1v4sa1          59 GDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI-PE-DAMTGTAEMLFDYISECISDFLDKHQMK-HKKLPLGF  135 (205)
T ss_dssp             EEEEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEEC-CS-TTTSSBHHHHHHHHHHHHHHHHHTTTCT-TCCCEEEE
T ss_pred             ceEEEEecCCceEEEEEEEeCCCCCCCceeEEEeecccC-Ch-hhccCCHHHHHHHHHHHHHHHHHhhCCC-CCccccEE
Confidence            358999999999999999952 2   2 22222223322 11 1123467889999999999999875432 22334666


Q ss_pred             cC
Q 007076          130 AA  131 (619)
Q Consensus       130 s~  131 (619)
                      +-
T Consensus       136 TF  137 (205)
T d1v4sa1         136 TF  137 (205)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=93.72  E-value=0.053  Score=43.73  Aligned_cols=66  Identities=21%  Similarity=0.189  Sum_probs=43.8

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|+||-|+|.++++|.| +|+++...+..--   +  ...++.+++.+.+.+.+.+.+..   ...+|..|.+..
T Consensus         2 ilivDgGgTKT~~vl~d-~g~~i~~~~t~g~---N--p~~~~~~~~~~~l~~~~~~~l~~---~~~~i~~i~~g~   67 (107)
T d1zbsa2           2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTSGI---N--PFQQDRNEIDTALRSEVLPAIGQ---KASSIRAVYFYG   67 (107)
T ss_dssp             EEEEEECSSEEEEEEEE-TTEEEEEEEEECC---C--TTTSCHHHHHHHHTTTTHHHHTT---STTTCCEEEEEE
T ss_pred             EEEEEeccccEEEEEEC-CCCeEEEEecCCc---C--cccCCHHHHHHHHHHHHHHHHhc---cccCCcEEEEEe
Confidence            78999999999999888 6888876543211   1  13566777777776655444432   356787776544

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.98  E-value=0.11  Score=47.96  Aligned_cols=25  Identities=12%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             EEEEcCCcceEEEEEcCCCCEEEEE
Q 007076           58 LGVDVGTGSARAGLFDESGKLLGSA   82 (619)
Q Consensus        58 lgIDiGTTsiKa~l~d~~g~il~~~   82 (619)
                      ||||+|+|++|++++|++++++.+.
T Consensus         3 iGIDiGGT~ik~~lvd~~g~i~~~~   27 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQDNQRTFKTE   27 (267)
T ss_dssp             EEEEECSSEEEEEEECSSCEEEEEE
T ss_pred             EEEEEChhhEEEEEEeCCCcEEEEE
Confidence            7999999999999999999988653

>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=92.40  E-value=0.085  Score=46.36  Aligned_cols=70  Identities=7%  Similarity=-0.002  Sum_probs=41.9

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeeccccc--CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK--EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~--~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +|.|..|+||+|..|||.+ +.+...........  ...... |   -.+...+++.+.+++.+++..+|.+||-=.
T Consensus         4 ILViN~GSSSlK~alf~~~-~~~~~~~i~~~~~e~~~~~~i~-d---~~~~~~~~i~~~L~~~~~~~~~i~avghRv   75 (172)
T d1saza1           4 ILTINPGSTSTKLSIFEDE-RMVKMQNFSHSPDELGRFQKIL-D---QLEFREKIARQFVEETGYSLSSFSAFVSRG   75 (172)
T ss_dssp             EEEEEECSSEEEEEEEETT-EEEEEEEEECCHHHHHTCSSGG-G---GHHHHHHHHHHHHHTTTCCGGGCSEEEEEC
T ss_pred             EEEEcCChHhheEEEEeCC-CceeEEEEEEccccccccCccc-c---hHHHHHHHHHHHHHHcCCChhcCeEEEECc
Confidence            8999999999999999854 44444444332111  111111 1   122334556666666666677888888643

>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.48  E-value=0.23  Score=41.09  Aligned_cols=70  Identities=17%  Similarity=0.127  Sum_probs=37.6

Q ss_pred             EEEEEcCCcceEEEEEcCC-CC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHH---HHcCCCCCCEEEE
Q 007076           57 FLGVDVGTGSARAGLFDES-GK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSAC---SLANVDGEEVKGV  127 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~-g~--il~~~~~~~~~~~---~~g~~e~dp~~~~~~~~~~l~~~~---~~~~~~~~~I~aI  127 (619)
                      +..||||+.++|..+++.+ ++  ++.+.+.++.+-.   ..|  ..+++ -.+.+.++++++.   +..+  ..++.++
T Consensus         5 iavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g--~ls~~-~i~~~~~~l~~f~~~~~~~~--v~~~~~v   79 (126)
T d1t6ca1           5 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETG--RLQED-RIEETIQVLKEYKKLIDEFK--VERVKAV   79 (126)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHS--SCCHH-HHHHHHHHHHHHHHHHHHTT--CSEEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCcceeeeeeeEEEEcccCccccC--CCCHH-HHHHHHHHHHHHHHHHHhcC--ccceEEe
Confidence            7889999999999999954 43  3333444443211   112  12222 2333444444433   3433  4567777


Q ss_pred             EEcC
Q 007076          128 GFAA  131 (619)
Q Consensus       128 gis~  131 (619)
                      |-++
T Consensus        80 aTsA   83 (126)
T d1t6ca1          80 ATEA   83 (126)
T ss_dssp             ECHH
T ss_pred             hhHH
Confidence            6554

>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.25  E-value=0.34  Score=44.59  Aligned_cols=70  Identities=13%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             CeEEEEEcCCcceEEEEEcC-CC--CEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           55 SVFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d~-~g--~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      +.++||||||+++++++... ++  +++.....+..-. + | .-.|.+.    +.++|++++++++....+|..|-+..
T Consensus         1 pii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~Gi-K-G-~I~ni~~----~~~aI~~av~~A~~~~~~i~~i~in~   73 (239)
T d1nbwa2           1 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM-K-G-TRDNIAG----TLAALEQALAKTPWSMSDVSRIYLNE   73 (239)
T ss_dssp             CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS-T-T-SGGGHHH----HHHHHHHHHTTSSCCGGGEEEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEEEEEcCCCEEEEEEEeecCCCC-c-c-eEECHHH----HHHHHHHHHHHhccccccceEEEecC
Confidence            35899999999999999973 22  4666666665422 3 4 3456554    45566677777776677888887765

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=90.13  E-value=0.29  Score=39.55  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=39.5

Q ss_pred             EEEEEcCCcceEEEEEcCCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007076           57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA  131 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~  131 (619)
                      .|.||||-|++|.++|+ +++++...+.++.       .....+++...+...+    ..   ....+..+.+++
T Consensus         2 ~L~IDIGNT~ik~~l~~-~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~---~~~~i~~~~~ss   61 (118)
T d3bexa1           2 YLLVDVGNTHSVFSITE-DGKTFRRWRLSTG-------VFQTEDELFSHLHPLL----GD---AMREIKGIGVAS   61 (118)
T ss_dssp             EEEEEECSSEEEEEEES-SSSSCEEEEEECC-------TTCCHHHHHHHHHHHH----GG---GGGGEEEEEEEE
T ss_pred             EEEEEECCCeEEEEEEE-CCEEEEEEEEccC-------ccccHHHHHHHHHHHH----hh---hhcccccceeec
Confidence            68999999999999997 4566666666554       2445566654433332    21   234678887776

>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=87.78  E-value=0.98  Score=36.87  Aligned_cols=72  Identities=15%  Similarity=0.163  Sum_probs=40.5

Q ss_pred             EEEEEcCCcceEEEEEcC-CCC--EEEEEEeeccccc---CCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEE
Q 007076           57 FLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVGF  129 (619)
Q Consensus        57 ~lgIDiGTTsiKa~l~d~-~g~--il~~~~~~~~~~~---~~g~~e~dp~~~~~~~~~~l~~~~~~~~-~~~~~I~aIgi  129 (619)
                      +.+|||||.++|..+++. ++.  ++...+.++.+-.   ..|.  .+ .+-.+.+.++|+++.+... ....++.++|-
T Consensus         2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~--l~-~~~i~~~~~~l~~f~~~~~~~~v~~i~~vaT   78 (124)
T d1u6za2           2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNM--LS-EEAMTRGLNCLSLFAERLQGFSPASVCIVGT   78 (124)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCC--BC-HHHHHHHHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred             EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehhhhccccCC--cC-HHHHHHHHHHHHHHHHHHHhcCcceehhhHH
Confidence            678999999999999994 443  3444444443321   2222  22 2333455555655554332 23356777776


Q ss_pred             cC
Q 007076          130 AA  131 (619)
Q Consensus       130 s~  131 (619)
                      ++
T Consensus        79 sA   80 (124)
T d1u6za2          79 HT   80 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=87.65  E-value=0.94  Score=39.93  Aligned_cols=72  Identities=17%  Similarity=0.151  Sum_probs=44.6

Q ss_pred             CCeEEEEEcCCcceEEEEEc--CCCCEEEEEEeecccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007076           54 RSVFLGVDVGTGSARAGLFD--ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA  130 (619)
Q Consensus        54 ~~~~lgIDiGTTsiKa~l~d--~~g~il~~~~~~~~~~~~~g~~e~dp~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis  130 (619)
                      |+|++|||||.+++-++|-+  +.|++-...+--.++.--.| ..++..-    +.++|+.++++.+...+++.-|-|-
T Consensus         1 M~~IaGiDIGNstTEvala~v~~~g~~~fl~S~i~~TTGiKG-T~~Ni~G----v~~aL~~al~k~g~~~~d~~lIriN   74 (241)
T d2d0oa2           1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKG-TLRNVFG----IQEALALVARGAGIAVSDISLIRIN   74 (241)
T ss_dssp             CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSSTT-STTHHHH----HHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred             CceEEEEecCcchhhhheeeecCCCcEEEEeccccccccccc-cHHHHHH----HHHHHHHHHHHcCCCHHHhheeeec
Confidence            46899999999999999887  35664443332222211111 2344443    4455667777777777788777663

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=86.48  E-value=1.2  Score=37.59  Aligned_cols=45  Identities=13%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             CCcCEEEEecCCcCCHHHHHHHHhhhCC---ceeecCCCC-ccchHHHHHH
Q 007076          511 HKIDTLLACGGLAKNPLFLQQHADIIGC---PIILPRENE-SVLLGAAILG  557 (619)
Q Consensus       511 ~~~~~I~~~GG~a~s~~~~Qi~Advlg~---pV~~~~~~e-~~alGAAllA  557 (619)
                      ..++.|+++||+|  .++.+.+...++.   .+.+++.++ +.|.|..+++
T Consensus       114 ~~~~~iil~GGGs--~ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g  162 (163)
T d2zgya2         114 SGYTHVMVIGGGA--ELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG  162 (163)
T ss_dssp             CCCCEEEEESTTH--HHHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred             cccceEEEECchH--HHHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence            3678899999997  4778888888875   466666555 6688877664

>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=85.47  E-value=0.63  Score=40.00  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh-------CCceeecCC-CCccchHHHHHHH
Q 007076          490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-------GCPIILPRE-NESVLLGAAILGA  558 (619)
Q Consensus       490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl-------g~pV~~~~~-~e~~alGAAllA~  558 (619)
                      .+++-.+..+...+-.+... ..++.|++.|+.+..+.+.+.+-..+       ..+|..... .+++++|||++|.
T Consensus        93 ~i~~~~~~~la~~l~~l~~~-ldP~~IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~l~~~a~~~GAA~lA~  168 (170)
T d2aa4a2          93 QLIHRSARTLARLIADIKAT-TDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQ  168 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HCCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhe-ECCCEEEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecCCCCcHHHHHHHHHHC
Confidence            44444444444444333221 35788999888776655554443332       234555443 4577899999985

>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Propionate kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.32  E-value=1.1  Score=39.42  Aligned_cols=30  Identities=20%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCcceEEEEEc-CCCCEEEEEEe
Q 007076           55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASS   84 (619)
Q Consensus        55 ~~~lgIDiGTTsiKa~l~d-~~g~il~~~~~   84 (619)
                      +.+|.|..|+||+|..||| .+.+++.....
T Consensus         2 plILviN~GSSSlK~~lf~~~~~~~l~~g~~   32 (189)
T d2e1za1           2 PVVLVINCGSSSIKFSVLDVATCDVLMAGIA   32 (189)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEE
T ss_pred             CEEEEEcCCchhheEEEEeCCCCcEEEEeee
Confidence            4699999999999999999 46677765443

>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.36  E-value=0.83  Score=39.62  Aligned_cols=68  Identities=22%  Similarity=0.126  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCcCCHHHHHHHHhhh---------CCceeecC-CCCccchHHHHHHH
Q 007076          490 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---------GCPIILPR-ENESVLLGAAILGA  558 (619)
Q Consensus       490 AvlEgiaf~~~~~l~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---------g~pV~~~~-~~e~~alGAAllA~  558 (619)
                      .+++-.+..+...+-.+... .+++.|++.||.++.+.+.+.+-+.+         ..+|..+. ..+++++|||++|.
T Consensus       107 ~i~~~~~~~la~~i~nl~~~-ldPe~IvlGG~i~~~~~~~~~l~~~~~~~~~~~~~~~~I~~s~lg~~a~~~GAA~lal  184 (186)
T d2ap1a1         107 AHVERYLDLLAVCLGNILTI-VDPDLLVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLHL  184 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HCCSEEEEESGGGGSTHHHHSSGGGSGGGSCTTCCCCEEEECSCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCcCEEEECCchhhhHHHHHHHHHHHHHHhcCcCCCCEEEECCCCChHHHHHHHHHhh
Confidence            44444444444443333221 35788988888886544433222222         22344444 35678899998863