Citrus Sinensis ID: 007077
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 619 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C866 | 570 | Pentatricopeptide repeat- | yes | no | 0.896 | 0.973 | 0.628 | 0.0 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.967 | 0.879 | 0.405 | 1e-141 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.956 | 0.861 | 0.399 | 1e-134 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.970 | 0.814 | 0.372 | 1e-125 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.906 | 0.757 | 0.383 | 1e-124 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.959 | 0.822 | 0.363 | 1e-117 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.935 | 0.830 | 0.372 | 1e-117 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.948 | 0.697 | 0.369 | 1e-112 | |
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.882 | 0.91 | 0.37 | 1e-110 | |
| Q9MA95 | 565 | Putative pentatricopeptid | no | no | 0.867 | 0.950 | 0.368 | 1e-106 |
| >sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/557 (62%), Positives = 441/557 (79%), Gaps = 2/557 (0%)
Query: 48 IQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKG 107
+Q+P LL YN ++K+ A SF K L LF +LR +G+ PDNFT P V K++G L +V +G
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65
Query: 108 EKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKC 167
EKVHGY VK GLEFD+YV NS+M MY LGKI K+FDEMP +DVVSWN IS +V
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMG 227
RFEDA+ VF+RM Q NL DEGT+VSTLSAC+ALKNLE+G+ I+R++ E E + +G
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185
Query: 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV 287
NAL+DM+CKCGCL +AR +FD M +KNV CWTSMV GYV+ G++++AR LF+RSPV+D+V
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245
Query: 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYI 347
LWTAM+NGYVQFNRFDEA+ LFR MQ ++PD F+LV+LLTGCAQ GALEQGKWIHGYI
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305
Query: 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKAL 407
NENR+TVD VV TAL++MYAKCG IE ALE+FYE++E+D ASWTS+I GLAMNG +AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365
Query: 408 ELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467
+L+ +M + G + D ITF+ VL+AC+HGG V EGR+ F++MTE + +QPK EH CLIDL
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425
Query: 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527
L RAGLLDEAEELI K+ E++E +VP+Y +LLSA R YGNV + E++A LEK+E DS
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485
Query: 528 SFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDP--SHSE 585
S HTLLA++YASANRWEDVTNVR+KMK++G+RK PGCSSIEI+G+ HEF+VGD SH +
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545
Query: 586 MKEIYSMLDRMAKTLLD 602
M EI SML + +LD
Sbjct: 546 MDEINSMLHQTTNLMLD 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/607 (40%), Positives = 388/607 (63%), Gaps = 8/607 (1%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
+ LKQIQAQ+ GL +P ++L+ FC L Y+ KI I++P + ++N+ I
Sbjct: 66 LLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTI 125
Query: 61 KAFAKKGSFRKSLLLFSKLRERGV---SPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKT 117
+ F++ + ++S LL+ ++ G PD+FTYP +FK L G + G+V+K
Sbjct: 126 RGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKL 185
Query: 118 GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVF 177
LE ++V N+ + M+ G + N +K+FDE P +D+VSWN I+G+ K E A+ V+
Sbjct: 186 RLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVY 245
Query: 178 RRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCK 236
+ M + + PD+ T++ +S+C+ L +L GKE + Y+ + L T + NAL+DM+ K
Sbjct: 246 KLM-ESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSK 304
Query: 237 CGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGY 296
CG + EAR +FD + + ++ WT+M+SGY CG L+ +R LFD +D+VLW AMI G
Sbjct: 305 CGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGS 364
Query: 297 VQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDA 356
VQ R +A+ALF+EMQ KPD+ ++ L+ C+QLGAL+ G WIH YI + ++++
Sbjct: 365 VQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNV 424
Query: 357 VVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416
+ T+L++MYAKCG I +AL +F+ ++ +++ ++T+II GLA++G + A+ F++MI
Sbjct: 425 ALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDA 484
Query: 417 GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476
G PD+ITFIG+LSAC HGG++ GR +F+ M + + P+L+HY ++DLLGRAGLL+E
Sbjct: 485 GIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEE 544
Query: 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536
A+ L+ +P E + + +GALL CR++GNV++GEK A L +++ DS + LL +
Sbjct: 545 ADRLMESMPMEADAAV---WGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGM 601
Query: 537 YASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRM 596
Y AN WED R+ M E GV K+PGCSSIE+NGI+ EF+V D S E ++IY L +
Sbjct: 602 YGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCL 661
Query: 597 AKTLLDS 603
+ + S
Sbjct: 662 GRHMRSS 668
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/598 (39%), Positives = 385/598 (64%), Gaps = 6/598 (1%)
Query: 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKA 62
Q KQ+ +Q G+ NP KL VF G++ YA K+F I P ++ +N +IK
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 63 FAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLG-EVKKGEKVHGYVVKTGLEF 121
++K + + L+ + + GV+PD+ T+PF+ + G + G+K+H +VVK GL
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168
Query: 122 DTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMR 181
+ YV N+++ MY + G + + +FD +DV SWN+ ISG+ + +E+++++ M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 182 QGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQ-ELEFTPIMGNALLDMYCKCGCL 240
+ + P T++ LSAC+ +K+ +L K +H Y+++ + E + + NAL++ Y CG +
Sbjct: 229 RNL-VSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEM 287
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
A +F M ++VI WTS+V GYV G L+ AR FD+ PVRD + WT MI+GY++
Sbjct: 288 DIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG 347
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
F+E++ +FREMQ + PD+F +V++LT CA LG+LE G+WI YI++N+I D VV
Sbjct: 348 CFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGN 407
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALI+MY KCG EKA ++F+++ ++D +WT+++ GLA NG+ +A+++F QM +P
Sbjct: 408 ALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQP 467
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDIT++GVLSAC+H G+VD+ R+FF M ++I+P L HYGC++D+LGRAGL+ EA E+
Sbjct: 468 DDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEI 527
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
+RK+P N I+ +GALL A R++ + M E A + ++E + + + LL NIYA
Sbjct: 528 LRKMPMNPNSIV---WGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGC 584
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAK 598
RW+D+ VR+K+ ++ ++K PG S IE+NG HEF+ GD SH + +EIY L+ +A+
Sbjct: 585 KRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQ 642
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/617 (37%), Positives = 372/617 (60%), Gaps = 16/617 (2%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
+ QLKQ + + G +P + +KL S +L YA K+F I P A+N LI
Sbjct: 43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102
Query: 61 KAFAKKGSFRKSLLLF-SKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGL 119
+A+A S+ F + E P+ +T+PF+ KA + + G+ +HG VK+ +
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162
Query: 120 EFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRR 179
D +V NS++ Y G + + K+F + +KDVVSWN I+G V+ + A+++F++
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 222
Query: 180 MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQ-ELEFTPIMGNALLDMYCKCG 238
M + ++ T+V LSAC ++NLE G+++ YI + + + NA+LDMY KCG
Sbjct: 223 M-ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCG 281
Query: 239 CLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQ 298
+ +A+ LFD M K+ + WT+M+ GY E AR++ + P +DIV W A+I+ Y Q
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 299 FNRFDEAVALFREMQIIR-LKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAV 357
+ +EA+ +F E+Q+ + +K ++ LV+ L+ CAQ+GALE G+WIH YI ++ I ++
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401
Query: 358 VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGG 417
V +ALI MY+KCG +EK+ E+F + ++D W+++I GLAM+G N+A+++F +M
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461
Query: 418 AKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477
KP+ +TF V ACSH GLVDE F+ M Y I P+ +HY C++D+LGR+G L++A
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA 521
Query: 478 EELIRKIPNENNEIIVP---LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534
+ I +P I P ++GALL AC+I+ N+++ E L ++E ++ H LL+
Sbjct: 522 VKFIEAMP------IPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575
Query: 535 NIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLD 594
NIYA +WE+V+ +R+ M+ G++K PGCSSIEI+G+IHEFL GD +H +++Y L
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635
Query: 595 RMAKTLLDSKQNAMEGD 611
+ + L K N E +
Sbjct: 636 EVMEKL---KSNGYEPE 649
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/631 (38%), Positives = 372/631 (58%), Gaps = 70/631 (11%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCT-HPSHGNLLYAEKIFGSIQSPCLLAYNLL 59
+ L+ I AQ+ +IGL L+KL+ FC P L YA +F +IQ P LL +N +
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGL 119
+ A +L L+ + G+ P+++T+PFV K+ K+G+++HG+V+K G
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 120 EFDTYVCNSIMDMY-------------------------------GVLGKICNVKKLFDE 148
+ D YV S++ MY G I N +KLFDE
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225
Query: 149 MPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL 208
+P KDVVSWN ISG+ + +++A+++F+ M + N+ PDE T+V+ +SAC ++EL
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMK-TNVRPDESTMVTVVSACAQSGSIEL 284
Query: 209 GKEIHRYINQELEFTPI-MGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVN 267
G+++H +I+ + + + NAL+D+Y KCG
Sbjct: 285 GRQVHLWIDDHGFGSNLKIVNALIDLYSKCG----------------------------- 315
Query: 268 CGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVAL 327
+LE A LF+R P +D++ W +I GY N + EA+ LF+EM P+ ++++
Sbjct: 316 --ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSI 373
Query: 328 LTGCAQLGALEQGKWIHGYINE--NRITVDAVVATALIEMYAKCGLIEKALEIFYELREK 385
L CA LGA++ G+WIH YI++ +T + + T+LI+MYAKCG IE A ++F + K
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 433
Query: 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445
+SW ++I G AM+G+ + + +LFS+M G +PDDITF+G+LSACSH G++D GR F
Sbjct: 434 SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIF 493
Query: 446 NTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505
TMT+ Y++ PKLEHYGC+IDLLG +GL EAEE+I + E + +I + +LL AC++
Sbjct: 494 RTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVI---WCSLLKACKM 550
Query: 506 YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCS 565
+GNV++GE A L KIE ++ + LL+NIYASA RW +V R + + G++KVPGCS
Sbjct: 551 HGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCS 610
Query: 566 SIEINGIIHEFLVGDPSHSEMKEIYSMLDRM 596
SIEI+ ++HEF++GD H +EIY ML+ M
Sbjct: 611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/602 (36%), Positives = 353/602 (58%), Gaps = 8/602 (1%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPC-LLAYNLL 59
+ +KQ+ A I + + + L S NL YA +F SI SP + +N
Sbjct: 25 LNHIKQLHAHILRTVINHKLNSF--LFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPF 82
Query: 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGL 119
++ ++ R ++L + ++R G D F++ + KAV + + +G ++HG K
Sbjct: 83 LRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIAT 142
Query: 120 EFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRR 179
D +V MDMY G+I + +FDEM +DVV+WN I + + ++A +F
Sbjct: 143 LCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEE 202
Query: 180 MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRY-INQELEFTPIMGNALLDMYCKCG 238
M+ N+MPDE + + +SAC N+ + I+ + I ++ + AL+ MY G
Sbjct: 203 MKDS-NVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAG 261
Query: 239 CLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQ 298
C+ ARE F +M +N+ T+MVSGY CG+L+ A+ +FD++ +D+V WT MI+ YV+
Sbjct: 262 CMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVE 321
Query: 299 FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVV 358
+ EA+ +F EM +KPD + ++++ CA LG L++ KW+H I+ N + + +
Sbjct: 322 SDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSI 381
Query: 359 ATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGA 418
ALI MYAKCG ++ ++F ++ ++ SW+S+I L+M+G+ + AL LF++M
Sbjct: 382 NNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENV 441
Query: 419 KPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAE 478
+P+++TF+GVL CSH GLV+EG++ F +MT+ Y I PKLEHYGC++DL GRA LL EA
Sbjct: 442 EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREAL 501
Query: 479 ELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538
E+I +P +N +I +G+L+SACRI+G +++G+ A + ++E L++NIYA
Sbjct: 502 EVIESMPVASNVVI---WGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYA 558
Query: 539 SANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAK 598
RWEDV N+R+ M+E V K G S I+ NG HEFL+GD H + EIY+ LD +
Sbjct: 559 REQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVS 618
Query: 599 TL 600
L
Sbjct: 619 KL 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/593 (37%), Positives = 353/593 (59%), Gaps = 14/593 (2%)
Query: 10 QIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSF 69
Q+F Q+N T N ++ T G L A+ +F S+ +N ++ FA+
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLTKL--GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRC 133
Query: 70 RKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSI 129
++L F+ + + G + +++ V A L ++ KG +VH + K+ D Y+ +++
Sbjct: 134 EEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193
Query: 130 MDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPD 189
+DMY G + + +++FDEM D++VVSWN I+ + +A+DVF+ M + + PD
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLES-RVEPD 252
Query: 190 EGTVVSTLSACTALKNLELGKEIHRYI--NQELEFTPIMGNALLDMYCKCGCLSEARELF 247
E T+ S +SAC +L +++G+E+H + N +L I+ NA +DMY KC + EAR +F
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 248 DEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307
D MP +NVI TSM+SGY + AR +F + R++V W A+I GY Q +EA++
Sbjct: 313 DSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALS 372
Query: 308 LFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIH------GYINENRITVDAVVATA 361
LF ++ + P + +L CA L L G H G+ ++ D V +
Sbjct: 373 LFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS 432
Query: 362 LIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD 421
LI+MY KCG +E+ +F ++ E+D SW ++I G A NG N+ALELF +M+ G KPD
Sbjct: 433 LIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD 492
Query: 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELI 481
IT IGVLSAC H G V+EGR +F++MT + + P +HY C++DLLGRAG L+EA+ +I
Sbjct: 493 HITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMI 552
Query: 482 RKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541
++P + + +I +G+LL+AC+++ N+ +G+ +A L ++E +S + LL+N+YA
Sbjct: 553 EEMPMQPDSVI---WGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELG 609
Query: 542 RWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLD 594
+WEDV NVR+ M++ GV K PGCS I+I G H F+V D SH K+I+S+LD
Sbjct: 610 KWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLD 662
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/596 (36%), Positives = 356/596 (59%), Gaps = 9/596 (1%)
Query: 6 QIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAK 65
QI I ++G ++ N L+ F + G L A K+F + ++++ +I +A+
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHF--YAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212
Query: 66 KGSFRKSL-LLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTY 124
+ + ++ L F +R+ V+P++ T V A L +++ GEKV+ ++ +G+E +
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272
Query: 125 VCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGC 184
+ ++++DMY I K+LFDE ++ N S +V+ +A+ VF M
Sbjct: 273 MVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDS- 331
Query: 185 NLMPDEGTVVSTLSACTALKNLELGKEIHRYI-NQELEFTPIMGNALLDMYCKCGCLSEA 243
+ PD +++S +S+C+ L+N+ GK H Y+ E + NAL+DMY KC A
Sbjct: 332 GVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTA 391
Query: 244 RELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFD 303
+FD M NK V+ W S+V+GYV G+++ A + F+ P ++IV W +I+G VQ + F+
Sbjct: 392 FRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFE 451
Query: 304 EAVALFREMQIIR-LKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362
EA+ +F MQ + D ++++ + C LGAL+ KWI+ YI +N I +D + T L
Sbjct: 452 EAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTL 511
Query: 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD 422
++M+++CG E A+ IF L +D ++WT+ I +AM G +A+ELF MI G KPD
Sbjct: 512 VDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Query: 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIR 482
+ F+G L+ACSHGGLV +G+ F +M +++ + P+ HYGC++DLLGRAGLL+EA +LI
Sbjct: 572 VAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIE 631
Query: 483 KIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542
+P E N++I + +LL+ACR+ GNV+M A ++ + + + + LL+N+YASA R
Sbjct: 632 DMPMEPNDVI---WNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGR 688
Query: 543 WEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAK 598
W D+ VR MKE G+RK PG SSI+I G HEF GD SH EM I +MLD +++
Sbjct: 689 WNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQ 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/600 (37%), Positives = 343/600 (57%), Gaps = 54/600 (9%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
+ Q+KQ+ AQI + L ++ KL+ + NL A ++F +Q P + N LI
Sbjct: 32 LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVHLCNSLI 89
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAV---GWLGEVKKGEKVHGYVVKT 117
+A A+ ++ +FS+++ G+ DNFTYPF+ KA WL VK +H ++ K
Sbjct: 90 RAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVK---MMHNHIEKL 146
Query: 118 GLEFDTYVCNSIMDMYGVLG--KICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVD 175
GL D YV N+++D Y G + + KLF++M ++D VSWN + G VK DA
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARR 206
Query: 176 VFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYC 235
+F M Q ++L I N +LD Y
Sbjct: 207 LFDEMPQ---------------------RDL------------------ISWNTMLDGYA 227
Query: 236 KCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPV--RDIVLWTAMI 293
+C +S+A ELF++MP +N + W++MV GY G +E AR +FD+ P+ +++V WT +I
Sbjct: 228 RCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIII 287
Query: 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT 353
GY + EA L +M LK D ++++L C + G L G IH + + +
Sbjct: 288 AGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLG 347
Query: 354 VDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQM 413
+A V AL++MYAKCG ++KA ++F ++ +KD SW +++ GL ++G +A+ELFS+M
Sbjct: 348 SNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRM 407
Query: 414 ISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473
G +PD +TFI VL +C+H GL+DEG +F +M +VY + P++EHYGCL+DLLGR G
Sbjct: 408 RREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGR 467
Query: 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLL 533
L EA ++++ +P E N +I +GALL ACR++ VD+ +++ L K++ D ++LL
Sbjct: 468 LKEAIKVVQTMPMEPNVVI---WGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLL 524
Query: 534 ANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSML 593
+NIYA+A WE V ++R KMK MGV K G SS+E+ IHEF V D SH + +IY ML
Sbjct: 525 SNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQML 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/575 (36%), Positives = 331/575 (57%), Gaps = 38/575 (6%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTH-PSHGNLLYAEKIFGSIQSPCLLAYNLL 59
+ +L Q+ + + + +N L++L+ FCT P NL YA +F SI P + +N +
Sbjct: 19 LVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSM 78
Query: 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGL 119
I+ ++ + K+L+ + ++ +G SPD FT+P+V KA L +++ G VHG+VVKTG
Sbjct: 79 IRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGF 138
Query: 120 EFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRR 179
E + YV ++ MY G++ ++F+++P +VV+W ISG V RF DA++ FR
Sbjct: 139 EVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFRE 198
Query: 180 MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC 239
M Q + +E +V L AC K++ GK H ++ Q L F P
Sbjct: 199 M-QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFL-QGLGFDP--------------- 241
Query: 240 LSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQF 299
F NVI TS++ Y CG L AR LFD P R +V W ++I GY Q
Sbjct: 242 ------YFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQN 295
Query: 300 NRFDEAVALFREMQIIRLKPDKF-----ILVALLTGCAQLGALEQGKWIHGYINENRITV 354
+EA+ +F +M + + PDK I +++ GC+QLG + IH Y+++
Sbjct: 296 GDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLG-----QSIHAYVSKTGFVK 350
Query: 355 DAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMI 414
DA + AL+ MYAK G E A + F +L +KD +WT +I GLA +G N+AL +F +M
Sbjct: 351 DAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQ 410
Query: 415 -SGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473
G A PD IT++GVL ACSH GLV+EG+R+F M +++ ++P +EHYGC++D+L RAG
Sbjct: 411 EKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGR 470
Query: 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLL 533
+EAE L++ +P + N V ++GALL+ C I+ N+++ +++ +++ + E S + LL
Sbjct: 471 FEEAERLVKTMPVKPN---VNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLL 527
Query: 534 ANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIE 568
+NIYA A RW DV +R+ MK V KV G SS+E
Sbjct: 528 SNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVE 562
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 619 | ||||||
| 359484390 | 662 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.930 | 0.737 | 0.0 | |
| 255576950 | 683 | pentatricopeptide repeat-containing prot | 0.998 | 0.904 | 0.728 | 0.0 | |
| 449457225 | 781 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.781 | 0.701 | 0.0 | |
| 449521645 | 735 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.828 | 0.701 | 0.0 | |
| 90657651 | 639 | hypothetical protein [Cleome spinosa] | 0.983 | 0.953 | 0.656 | 0.0 | |
| 356519383 | 614 | PREDICTED: pentatricopeptide repeat-cont | 0.938 | 0.946 | 0.683 | 0.0 | |
| 356502400 | 591 | PREDICTED: pentatricopeptide repeat-cont | 0.922 | 0.966 | 0.681 | 0.0 | |
| 15221713 | 570 | pentatricopeptide repeat-containing prot | 0.896 | 0.973 | 0.628 | 0.0 | |
| 297846530 | 554 | pentatricopeptide repeat-containing prot | 0.890 | 0.994 | 0.627 | 0.0 | |
| 297738897 | 571 | unnamed protein product [Vitis vinifera] | 0.848 | 0.919 | 0.597 | 0.0 |
| >gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/616 (73%), Positives = 531/616 (86%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
M LKQIQ QI + G Q+ +TLNK MV CT PS GNL YAE+IF I P L YNL+I
Sbjct: 45 MQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVI 104
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
KAF K GSFRK++LLF +LRE G+SPDNFTYPFVFKA+G LGEV++GEKV+G+VVK+GLE
Sbjct: 105 KAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLE 164
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
FDTYVCNS+MDMY +G++ N++++F+EMP +DVVSWNV ISG+VKC R+EDAVDVFRRM
Sbjct: 165 FDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRM 224
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
+Q +L P+E TVVSTLSAC ALK LELGKEIHRY+ ++L FT +GNAL+DMYCKCG L
Sbjct: 225 QQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHL 284
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
S ARE+F++MP K VICWTSMVSGYVNCGQL++AR+LF+RSPVRD+VLWTAMINGYVQFN
Sbjct: 285 SIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFN 344
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
RFD+AVALFREMQI R+ PD+F LVALLTGCAQLG LEQGKWIHGYI+EN+I +DAVV T
Sbjct: 345 RFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGT 404
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALIEMYAKCG IEK+LEIF L+EKD ASWTSIICGLAMNGK +KALELF++M+ G KP
Sbjct: 405 ALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKP 464
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITFIGVLSACSHGGLV+EGR+ F +MT VYQI+PKLEHYGCLIDLLGRAG LDEAEEL
Sbjct: 465 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 524
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
I K PN NNE+IVPLYGALLSACR +GNV+MGE++A L IES DSS HTLLANIYASA
Sbjct: 525 IEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASA 584
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600
+RWEDVT VR+KMK++GV+KVPGCSS+E+NGI+HEFLVGD SH EM+EIYSMLD +AK L
Sbjct: 585 DRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPL 644
Query: 601 LDSKQNAMEGDNLVAI 616
L +N MEG+ V +
Sbjct: 645 LGLDENEMEGEIPVPV 660
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/618 (72%), Positives = 531/618 (85%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
MT LKQI AQIF++GL Q+ +LNKLM FCT P +GNL YAEK+F I+ PCLL YNL+I
Sbjct: 50 MTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYPCLLIYNLII 109
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
KAFAKKG+++++L+LFSKLRE G+ PDNFTYPFVFKA+G+LGEV K EK+ G V KTGLE
Sbjct: 110 KAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLE 169
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
FDTYV NS++DMY L +K LFDEMPD+DV+SWNV ISG+VKC RFEDA++VF RM
Sbjct: 170 FDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRM 229
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
++ LMPDE TVVSTLSACTALK LELGK+IH Y+ ++FTPI+GNALLDMYCKCGCL
Sbjct: 230 QEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYCKCGCL 289
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
S AR +F+EMP+KNVICWT+MVSGY NCG+LE+AR+LF+ SP+RD+V+WTAMINGYVQFN
Sbjct: 290 SIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFN 349
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
RFDEAVALFREMQI ++KPDKFI+V+LLTGCAQ GA+EQGKWIH +I+ENRI +DAVV T
Sbjct: 350 RFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGT 409
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALIEMYAKCG IEKALEIFY LR KD ASWTSIICGLAMNGK +KALELFS+M G +P
Sbjct: 410 ALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRP 469
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITFIGVLSACSHGGLV+EGR+FFN+M YQI+PK+EHYGCL+DLLGRAGLL+EAEEL
Sbjct: 470 DDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEEL 529
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
I+KIP+EN I VPLYG+LLSACRIYGNV+MGE++A L K ES DSS HTLLANIYA A
Sbjct: 530 IKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFA 589
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600
+RWEDVT VR+KMK++GV+K PGCSSIE++ IIHEF G PSH EM+EIY ML+ MAK L
Sbjct: 590 DRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREIYYMLNIMAKPL 649
Query: 601 LDSKQNAMEGDNLVAINF 618
L S +N MEG++LV + F
Sbjct: 650 LGSAKNEMEGEDLVGMTF 667
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/610 (70%), Positives = 510/610 (83%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
M QLKQIQ+QIF+IGL+ + +T+NKLM FC S GNL YAEKIF +Q P L YN+++
Sbjct: 156 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 215
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
K +AK+G RK LLLF +LRE G+ PD FTYPFV KA+G L +V++GEKV G++VKTG++
Sbjct: 216 KMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 275
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
D YV NS++DMY L + N KKLFDEM +D VSWNV ISG+V+C RFEDA++ FR M
Sbjct: 276 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 335
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
+Q N PDE TVVSTLSACTALKNLELG EIH Y+ +EL FT + NALLDMY KCGCL
Sbjct: 336 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCL 395
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
+ AR +FDEM KNVICWTSM+SGY+NCG L +ARDLFD+SPVRD+VLWTAMINGYVQF+
Sbjct: 396 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 455
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
FD+AVALFREMQI R+KPDKF +V LLTGCAQLGALEQGKWIHGY++ENRIT+D VV T
Sbjct: 456 HFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 515
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALIEMY+KCG ++K+LEIFYEL +KD ASWTSIICGLAMNGK ++AL LFS+M GAKP
Sbjct: 516 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 575
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITFIGVLSACSHGGLV+EGRRFFN+M +V++I+PK+EHYGC+IDLLGRAGLLDEAEEL
Sbjct: 576 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 635
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
I++IP EN EI+VPLYGALLSACRI+ NVDMGE+LA LE IES DSS HTLLANIYAS
Sbjct: 636 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 695
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600
+RWED VR+KMKE+GV+K+PGCS IE++GI+HEFLVGDPSH EM EI SML+R+ L
Sbjct: 696 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVTGQL 755
Query: 601 LDSKQNAMEG 610
L K++ +E
Sbjct: 756 LGLKESQVES 765
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/609 (70%), Positives = 510/609 (83%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
M QLKQIQ+QIF+IGL+ + +T+NKLM FC S GNL YAEKIF +Q P L YN+++
Sbjct: 110 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 169
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
K +AK+G RK LLLF +LRE G+ PD FTYPFV KA+G L +V++GEKV G++VKTG++
Sbjct: 170 KIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 229
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
D YV NS++DMY L + N KKLFDEM +D VSWNV ISG+V+C RFEDA++ FR M
Sbjct: 230 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 289
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
+Q N PDE TVVSTLSACTALKNLELG EIH Y+ +EL FT + NALLDMY KCGCL
Sbjct: 290 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCL 349
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
+ AR +FDEM KNVICWTSM+SGY+NCG L +ARDLFD+SPVRD+VLWTAMINGYVQF+
Sbjct: 350 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 409
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
FD+AVALFREMQI ++KPDKF +V LLTGCAQLGALEQGKWIHGY++ENRIT+D VV T
Sbjct: 410 HFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 469
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALIEMY+KCG ++K+LEIFYEL +KD ASWTSIICGLAMNGK ++AL LFS+M GAKP
Sbjct: 470 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 529
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITFIGVLSACSHGGLV+EGRRFFN+M +V++I+PK+EHYGC+IDLLGRAGLLDEAEEL
Sbjct: 530 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 589
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
I++IP EN EI+VPLYGALLSACRI+ NVDMGE+LA LE IES DSS HTLLANIYAS
Sbjct: 590 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 649
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600
+RWED VR+KMKE+GV+K+PGCS IE++GI+HEFLVGDPSH EM EI SML+R+ L
Sbjct: 650 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVTGQL 709
Query: 601 LDSKQNAME 609
L K++ +E
Sbjct: 710 LGLKESQVE 718
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/611 (65%), Positives = 508/611 (83%), Gaps = 2/611 (0%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
M L QI A+IF++GLQ N +TL K+++FCT PS G++ YAE++ G +QSPCL+ YNL+I
Sbjct: 29 MAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMI 88
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
KA AK +FRK L+LFS+LR++G++PDNFT P VFKA+G LG+V +GEKVHGYVVK+G
Sbjct: 89 KAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSG-- 146
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
FD VCNS+M MYG LGK+ KK+FDE+P++DVVSWNV IS +V +FEDA+ VFRRM
Sbjct: 147 FDACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRM 206
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
R+ NL DE TVVSTLSAC+ L+N E+G+EIHRY++ ELE T +GNALLDMYCKCGC+
Sbjct: 207 RRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCV 266
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
+AR +FDEM NKNVICWTSMVSGY + G L++AR+LF+RSPVRDIVLWTAMINGYVQFN
Sbjct: 267 DKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFN 326
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
FDEA+ LFR+MQI RL+PD FILV LL GCAQ GALEQGKW+HGYI+EN IT+D VV T
Sbjct: 327 LFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGT 386
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
AL+++YAKCG +EKALE+FYE++E+D ASWTS+I GLA+NG +KAL+ FSQM G +P
Sbjct: 387 ALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRP 446
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITFIGVL+AC+HGGLV+EGRR+F++MT+ Y+IQPK EHY CLIDLL RAGLLDEAE L
Sbjct: 447 DDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELL 506
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
+ IP E+++I+VPLY +LLSACR YGN+ M E++ LE++E KDSS HTLLA++YASA
Sbjct: 507 LEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASA 566
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600
NRWEDVT VR+KMKE+G+RK PGCSSIE+NG++HEF+VG PSH EM +I+S+L ++ K +
Sbjct: 567 NRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHMEMDDIHSVLGQVTKWM 626
Query: 601 LDSKQNAMEGD 611
L ++ +E +
Sbjct: 627 LGLEREGIESE 637
|
Source: Cleome spinosa Species: Cleome spinosa Genus: Cleome Family: Cleomaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/581 (68%), Positives = 470/581 (80%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
M+QLKQIQA IF +GLQQ+ +TLNKLM F S G+ YA +IF I P L YNL+I
Sbjct: 21 MSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMI 80
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
KAF K GSFR ++ LF +LRE GV PDN+TYP+V K +G +GEV++GEKVH +VVKTGLE
Sbjct: 81 KAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLE 140
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
FD YVCNS MDMY LG + ++F+EMPD+D VSWN+ ISG+V+C RFE+AVDV+RRM
Sbjct: 141 FDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRM 200
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
N P+E TVVSTLSAC L+NLELGKEIH YI EL+ T IMGNALLDMYCKCG +
Sbjct: 201 WTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLDMYCKCGHV 260
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
S ARE+FD M KNV CWTSMV+GYV CGQL++AR+LF+RSP RDIVLWTAMINGYVQFN
Sbjct: 261 SVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFN 320
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
RF+E +ALF EMQI +KPDKFI+V LLTGCAQ GALEQGKWIH YI+ENRI VDAVV T
Sbjct: 321 RFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGT 380
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALIEMYAKCG IEK+ EIF L+EKD SWTSIICGLAMNGK ++ALELF M + G KP
Sbjct: 381 ALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKP 440
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITF+ VLSACSH GLV+EGR+ F++M+ +Y I+P LEHYGC IDLLGRAGLL EAEEL
Sbjct: 441 DDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEEL 500
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
++K+P +NNEIIVPLYGALLSACR YGN+DMGE+LA L K++S DSS HTLLA+IYASA
Sbjct: 501 VKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASA 560
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDP 581
+RWEDV VR KMK++G++KVPG S+IE++G + L P
Sbjct: 561 DRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQQRLSEGP 601
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/571 (68%), Positives = 471/571 (82%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
M+QLKQIQA IF GLQQ+ + LNKLM F S G+ YA +IF I P L YNL+I
Sbjct: 21 MSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMI 80
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
KAF K+GS R ++ LF +LRERGV PDN+TYP+V K +G +GEV++GEK+H +VVKTGLE
Sbjct: 81 KAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLE 140
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
FD YVCNS+MDMY LG + ++F+EMP++D VSWN+ ISG+V+C RFE+AVDV+RRM
Sbjct: 141 FDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRM 200
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
+ N P+E TVVSTLSAC L+NLELGKEIH YI EL+ TPIMGNALLDMYCKCGC+
Sbjct: 201 QMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCV 260
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
S ARE+FD M KNV CWTSMV+GYV CGQL++AR LF+RSP RD+VLWTAMINGYVQFN
Sbjct: 261 SVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFN 320
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
F++A+ALF EMQI ++PDKFI+V LLTGCAQLGALEQGKWIH YI+ENRI +DAVV+T
Sbjct: 321 HFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVST 380
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALIEMYAKCG IEK+LEIF L++ D SWTSIICGLAMNGK ++ALELF M + G KP
Sbjct: 381 ALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKP 440
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITF+ VLSAC H GLV+EGR+ F++M+ +Y I+P LEHYGC IDLLGRAGLL EAEEL
Sbjct: 441 DDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEEL 500
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
++K+P++NNEIIVPLYGALLSACR YGN+DMGE+LA L K++S DSS HTLLA+IYASA
Sbjct: 501 VKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASA 560
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEING 571
+RWEDV VR KMK++G++KVPG S+IE++G
Sbjct: 561 DRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana] gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/557 (62%), Positives = 441/557 (79%), Gaps = 2/557 (0%)
Query: 48 IQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKG 107
+Q+P LL YN ++K+ A SF K L LF +LR +G+ PDNFT P V K++G L +V +G
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65
Query: 108 EKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKC 167
EKVHGY VK GLEFD+YV NS+M MY LGKI K+FDEMP +DVVSWN IS +V
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMG 227
RFEDA+ VF+RM Q NL DEGT+VSTLSAC+ALKNLE+G+ I+R++ E E + +G
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185
Query: 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV 287
NAL+DM+CKCGCL +AR +FD M +KNV CWTSMV GYV+ G++++AR LF+RSPV+D+V
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245
Query: 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYI 347
LWTAM+NGYVQFNRFDEA+ LFR MQ ++PD F+LV+LLTGCAQ GALEQGKWIHGYI
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305
Query: 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKAL 407
NENR+TVD VV TAL++MYAKCG IE ALE+FYE++E+D ASWTS+I GLAMNG +AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365
Query: 408 ELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467
+L+ +M + G + D ITF+ VL+AC+HGG V EGR+ F++MTE + +QPK EH CLIDL
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425
Query: 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527
L RAGLLDEAEELI K+ E++E +VP+Y +LLSA R YGNV + E++A LEK+E DS
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485
Query: 528 SFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDP--SHSE 585
S HTLLA++YASANRWEDVTNVR+KMK++G+RK PGCSSIEI+G+ HEF+VGD SH +
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545
Query: 586 MKEIYSMLDRMAKTLLD 602
M EI SML + +LD
Sbjct: 546 MDEINSMLHQTTNLMLD 562
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/553 (62%), Positives = 438/553 (79%), Gaps = 2/553 (0%)
Query: 59 LIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTG 118
++K+ A+ SF K L LF +LR +G+ PDNFT P V K++G L +V +GEKVHGY VKTG
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 119 LEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFR 178
LE D+YVCNS+M MY LGK+ K+FDEMP++DVVSWN IS +V RFEDA+ VF+
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 179 RMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCG 238
RM + NL DEGT+VSTLSAC+ LKNLE+G+ I+RY+ E E + GNAL+DM+CKCG
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGNALVDMFCKCG 180
Query: 239 CLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQ 298
CL +AR +FD M +KNV CWTSMVSGYV+ G+ ++AR+LF+RSPV+D+VLWTAM+NGYVQ
Sbjct: 181 CLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQ 240
Query: 299 FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVV 358
FNRFDEA+ LFR MQ R++PD F+LV+LLTGCAQ GALEQGKWIHGYI ENR+TVD VV
Sbjct: 241 FNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVV 300
Query: 359 ATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGA 418
TAL++MYAKCG IE AL +FYE++E+D ASWTS+I GLA NG +AL+L+ +M + G
Sbjct: 301 GTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGV 360
Query: 419 KPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAE 478
+ DDITF+ VL+ACSHGG V EGRR F +MTE ++IQPK EHY CLIDLL RAGLLDEAE
Sbjct: 361 RLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAE 420
Query: 479 ELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538
ELI K+ E ++ +VP+Y +LLSA R YGNV + E++A LEK+E DSS HTLLA++YA
Sbjct: 421 ELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYA 480
Query: 539 SANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVG-DP-SHSEMKEIYSMLDRM 596
SANRWEDVTNVR+KMK++G+RK PGCSSIE++G+ HEF+VG DP SH +M EI SML +
Sbjct: 481 SANRWEDVTNVRRKMKDLGIRKFPGCSSIEVDGVSHEFIVGNDPSSHPKMDEINSMLHQT 540
Query: 597 AKTLLDSKQNAME 609
+LD + +E
Sbjct: 541 THLMLDLEHEEIE 553
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/616 (59%), Positives = 439/616 (71%), Gaps = 91/616 (14%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
M LKQIQ QI + G Q+ +TLNK MV CT PS GNL YAE+IF I P L YNL+I
Sbjct: 45 MQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVI 104
Query: 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLE 120
KAF K GSFRK++LLF +LRE G+SPDNFTYPFVFKA+G LGEV++GEKV+G+VVK+GLE
Sbjct: 105 KAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLE 164
Query: 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180
FDTYVCNS+MDMY +G++ N++++F+EMP +DVVSWNV ISG+VKC R+EDAVDVFR++
Sbjct: 165 FDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQI 224
Query: 181 RQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240
N MP + T I +++ Y CG L
Sbjct: 225 ---FNDMPIK--------------------------------TVICWTSMVSGYVNCGQL 249
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
EARELF+ P ++V+ WT+M++G YVQFN
Sbjct: 250 DEARELFERSPVRDVVLWTAMING-------------------------------YVQFN 278
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
RFD+AVALFREMQI R+ PD+F LVALLT DAVV T
Sbjct: 279 RFDDAVALFREMQIKRVSPDRFTLVALLT-------------------------DAVVGT 313
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
ALIEMYAKCG IEK+LEIF L+EKD ASWTSIICGLAMNGK +KALELF++M+ G KP
Sbjct: 314 ALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKP 373
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
DDITFIGVLSACSHGGLV+EGR+ F +MT VYQI+PKLEHYGCLIDLLGRAG LDEAEEL
Sbjct: 374 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 433
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540
I K PN NNE+IVPLYGALLSACR +GNV+MGE++A L IES DSS HTLLANIYASA
Sbjct: 434 IEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASA 493
Query: 541 NRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600
+RWEDVT VR+KMK++GV+KVPGCSS+E+NGI+HEFLVGD SH EM+EIYSMLD +AK L
Sbjct: 494 DRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPL 553
Query: 601 LDSKQNAMEGDNLVAI 616
L +N MEG+ V +
Sbjct: 554 LGLDENEMEGEIPVPV 569
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 619 | ||||||
| TAIR|locus:2206164 | 570 | AT1G31430 [Arabidopsis thalian | 0.907 | 0.985 | 0.606 | 2.8e-185 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.967 | 0.879 | 0.400 | 2.6e-127 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.954 | 0.860 | 0.398 | 5.7e-123 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.972 | 0.815 | 0.369 | 1.3e-114 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.957 | 0.800 | 0.372 | 3.9e-108 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.957 | 0.821 | 0.359 | 1.9e-106 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.935 | 0.830 | 0.369 | 5.1e-106 | |
| TAIR|locus:2084963 | 661 | AT3G04750 "AT3G04750" [Arabido | 0.949 | 0.889 | 0.357 | 1.8e-94 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.788 | 0.787 | 0.393 | 1.3e-93 | |
| TAIR|locus:2129361 | 612 | AT4G14050 [Arabidopsis thalian | 0.788 | 0.797 | 0.380 | 2.7e-93 |
| TAIR|locus:2206164 AT1G31430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1797 (637.6 bits), Expect = 2.8e-185, P = 2.8e-185
Identities = 342/564 (60%), Positives = 435/564 (77%)
Query: 48 IQSPCLLAYNLLIKAFAXXXXXXXXXXXXXXXXERGVSPDNFTYPFVFKAVGWLGEVKKG 107
+Q+P LL YN ++K+ A +G+ PDNFT P V K++G L +V +G
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65
Query: 108 EKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKC 167
EKVHGY VK GLEFD+YV NS+M MY LGKI K+FDEMP +DVVSWN IS +V
Sbjct: 66 EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125
Query: 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMG 227
RFEDA+ VF+RM Q NL DEGT+VSTLSAC+ALKNLE+G+ I+R++ E E + +G
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185
Query: 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV 287
NAL+DM+CKCGCL +AR +FD M +KNV CWTSMV GYV+ G++++AR LF+RSPV+D+V
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245
Query: 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYI 347
LWTAM+NGYVQFNRFDEA+ LFR MQ ++PD F+LV+LLTGCAQ GALEQGKWIHGYI
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305
Query: 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKAL 407
NENR+TVD VV TAL++MYAKCG IE ALE+FYE++E+D ASWTS+I GLAMNG +AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365
Query: 408 ELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467
+L+ +M + G + D ITF+ VL+AC+HGG V EGR+ F++MTE + +QPK EH CLIDL
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425
Query: 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527
L RAGLLDEAEELI K+ E++E +VP+Y +LLSA R YGNV + E++A LEK+E DS
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485
Query: 528 SFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDP--SHSE 585
S HTLLA++YASANRWEDVTNVR+KMK++G+RK PGCSSIEI+G+ HEF+VGD SH +
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545
Query: 586 MKEIYSMLDRMAKTLLDSKQNAME 609
M EI SML + +LD + ++
Sbjct: 546 MDEINSMLHQTTNLMLDLEHKEID 569
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 243/607 (40%), Positives = 377/607 (62%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
+ LKQIQAQ+ GL +P ++L+ FC L Y+ KI I++P + ++N+ I
Sbjct: 66 LLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTI 125
Query: 61 KAFAXXXXXXXXXXXXXXXXERGVS---PDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKT 117
+ F+ G PD+FTYP +FK L G + G+V+K
Sbjct: 126 RGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKL 185
Query: 118 GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVF 177
LE ++V N+ + M+ G + N +K+FDE P +D+VSWN I+G+ K E A+ V+
Sbjct: 186 RLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVY 245
Query: 178 RRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCK 236
+ M + PD+ T++ +S+C+ L +L GKE + Y+ + L T + NAL+DM+ K
Sbjct: 246 KLMESE-GVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSK 304
Query: 237 CGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGY 296
CG + EAR +FD + + ++ WT+M+SGY CG L+ +R LFD +D+VLW AMI G
Sbjct: 305 CGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGS 364
Query: 297 VQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDA 356
VQ R +A+ALF+EMQ KPD+ ++ L+ C+QLGAL+ G WIH YI + ++++
Sbjct: 365 VQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNV 424
Query: 357 VVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416
+ T+L++MYAKCG I +AL +F+ ++ +++ ++T+II GLA++G + A+ F++MI
Sbjct: 425 ALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDA 484
Query: 417 GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476
G PD+ITFIG+LSAC HGG++ GR +F+ M + + P+L+HY ++DLLGRAGLL+E
Sbjct: 485 GIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEE 544
Query: 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536
A+ L+ +P E + + +GALL CR++GNV++GEK A L +++ DS + LL +
Sbjct: 545 ADRLMESMPMEADAAV---WGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGM 601
Query: 537 YASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRM 596
Y AN WED R+ M E GV K+PGCSSIE+NGI+ EF+V D S E ++IY L +
Sbjct: 602 YGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCL 661
Query: 597 AKTLLDS 603
+ + S
Sbjct: 662 GRHMRSS 668
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
Identities = 239/599 (39%), Positives = 381/599 (63%)
Query: 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKA 62
Q KQ+ +Q G+ NP KL VF G++ YA K+F I P ++ +N +IK
Sbjct: 49 QFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKG 108
Query: 63 FAXXXXXXXXXXXXXXXXERGVSPDNFTYPFVFKAVGWLG-EVKKGEKVHGYVVKTGLEF 121
++ + GV+PD+ T+PF+ + G + G+K+H +VVK GL
Sbjct: 109 WSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS 168
Query: 122 DTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMR 181
+ YV N+++ MY + G + + +FD +DV SWN+ ISG+ + +E+++++ M
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228
Query: 182 QGCNLM-PDEGTVVSTLSACTALKNLELGKEIHRYINQ-ELEFTPIMGNALLDMYCKCGC 239
+ NL+ P T++ LSAC+ +K+ +L K +H Y+++ + E + + NAL++ Y CG
Sbjct: 229 R--NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGE 286
Query: 240 LSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQF 299
+ A +F M ++VI WTS+V GYV G L+ AR FD+ PVRD + WT MI+GY++
Sbjct: 287 MDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRA 346
Query: 300 NRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVA 359
F+E++ +FREMQ + PD+F +V++LT CA LG+LE G+WI YI++N+I D VV
Sbjct: 347 GCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG 406
Query: 360 TALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAK 419
ALI+MY KCG EKA ++F+++ ++D +WT+++ GLA NG+ +A+++F QM +
Sbjct: 407 NALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQ 466
Query: 420 PDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEE 479
PDDIT++GVLSAC+H G+VD+ R+FF M ++I+P L HYGC++D+LGRAGL+ EA E
Sbjct: 467 PDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYE 526
Query: 480 LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539
++RK+P N I+ +GALL A R++ + M E A + ++E + + + LL NIYA
Sbjct: 527 ILRKMPMNPNSIV---WGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAG 583
Query: 540 ANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAK 598
RW+D+ VR+K+ ++ ++K PG S IE+NG HEF+ GD SH + +EIY L+ +A+
Sbjct: 584 CKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQ 642
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 226/612 (36%), Positives = 365/612 (59%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLI 60
+ QLKQ + + G +P + +KL S +L YA K+F I P A+N LI
Sbjct: 43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLI 102
Query: 61 KAFAXXXXXXXXX-XXXXXXXERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGL 119
+A+A E P+ +T+PF+ KA + + G+ +HG VK+ +
Sbjct: 103 RAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAV 162
Query: 120 EFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRR 179
D +V NS++ Y G + + K+F + +KDVVSWN I+G V+ + A+++F++
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 222
Query: 180 MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCG 238
M ++ T+V LSAC ++NLE G+++ YI + + + NA+LDMY KCG
Sbjct: 223 MESE-DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCG 281
Query: 239 CLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQ 298
+ +A+ LFD M K+ + WT+M+ GY E AR++ + P +DIV W A+I+ Y Q
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 299 FNRFDEAVALFREMQIIR-LKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAV 357
+ +EA+ +F E+Q+ + +K ++ LV+ L+ CAQ+GALE G+WIH YI ++ I ++
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401
Query: 358 VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGG 417
V +ALI MY+KCG +EK+ E+F + ++D W+++I GLAM+G N+A+++F +M
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461
Query: 418 AKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477
KP+ +TF V ACSH GLVDE F+ M Y I P+ +HY C++D+LGR+G L++A
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA 521
Query: 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537
+ I +P + + +GALL AC+I+ N+++ E L ++E ++ H LL+NIY
Sbjct: 522 VKFIEAMPIPPSTSV---WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIY 578
Query: 538 ASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMA 597
A +WE+V+ +R+ M+ G++K PGCSSIEI+G+IHEFL GD +H +++Y L +
Sbjct: 579 AKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVM 638
Query: 598 KTLLDSKQNAME 609
+ L K N E
Sbjct: 639 EKL---KSNGYE 647
|
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| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 227/610 (37%), Positives = 358/610 (58%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCT-HPSHGNLLYAEKIFGSIQSPCLLAYNLL 59
+ L+ I AQ+ +IGL L+KL+ FC P L YA +F +IQ P LL +N +
Sbjct: 46 LQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTM 105
Query: 60 IKAFAXXXXXXXXXXXXXXXXERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGL 119
+ A G+ P+++T+PFV K+ K+G+++HG+V+K G
Sbjct: 106 FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGC 165
Query: 120 EFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRR 179
+ D YV S++ MY G++ + K+FD+ P +DVVS+ I G+ E+A +F
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225
Query: 180 MRQGCNLMPDEGTVVSTLSACTALKN-LELGKEIHRYINQELEFTPIMGNALLDMYCKCG 238
+ + ++S + K LEL K++ + + E T + ++ + G
Sbjct: 226 IP--VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV---TVVSACAQSG 280
Query: 239 CLSEARELF----DEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMIN 294
+ R++ D N+ +++ Y CG+LE A LF+R P +D++ W +I
Sbjct: 281 SIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIG 340
Query: 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENR--I 352
GY N + EA+ LF+EM P+ ++++L CA LGA++ G+WIH YI++ +
Sbjct: 341 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGV 400
Query: 353 TVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQ 412
T + + T+LI+MYAKCG IE A ++F + K +SW ++I G AM+G+ + + +LFS+
Sbjct: 401 TNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSR 460
Query: 413 MISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472
M G +PDDITF+G+LSACSH G++D GR F TMT+ Y++ PKLEHYGC+IDLLG +G
Sbjct: 461 MRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG 520
Query: 473 LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTL 532
L EAEE+I + E + +I + +LL AC+++GNV++GE A L KIE ++ + L
Sbjct: 521 LFKEAEEMINMMEMEPDGVI---WCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVL 577
Query: 533 LANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSM 592
L+NIYASA RW +V R + + G++KVPGCSSIEI+ ++HEF++GD H +EIY M
Sbjct: 578 LSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 637
Query: 593 LDRMAKTLLD 602
L+ M + LL+
Sbjct: 638 LEEM-EVLLE 646
|
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| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 217/603 (35%), Positives = 346/603 (57%)
Query: 1 MTQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHG-NLLYAEKIFGSIQSPC-LLAYNL 58
+ +KQ+ A I + + LN + + S NL YA +F SI SP + +N
Sbjct: 25 LNHIKQLHAHILRTVINHK---LNSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNP 81
Query: 59 LIKAFAXXXXXXXXXXXXXXXXERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTG 118
++ + G D F++ + KAV + + +G ++HG K
Sbjct: 82 FLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIA 141
Query: 119 LEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFR 178
D +V MDMY G+I + +FDEM +DVV+WN I + + ++A +F
Sbjct: 142 TLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFE 201
Query: 179 RMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRY-INQELEFTPIMGNALLDMYCKC 237
M+ N+MPDE + + +SAC N+ + I+ + I ++ + AL+ MY
Sbjct: 202 EMKDS-NVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGA 260
Query: 238 GCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYV 297
GC+ ARE F +M +N+ T+MVSGY CG+L+ A+ +FD++ +D+V WT MI+ YV
Sbjct: 261 GCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYV 320
Query: 298 QFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAV 357
+ + EA+ +F EM +KPD + ++++ CA LG L++ KW+H I+ N + +
Sbjct: 321 ESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELS 380
Query: 358 VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGG 417
+ ALI MYAKCG ++ ++F ++ ++ SW+S+I L+M+G+ + AL LF++M
Sbjct: 381 INNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQEN 440
Query: 418 AKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477
+P+++TF+GVL CSH GLV+EG++ F +MT+ Y I PKLEHYGC++DL GRA LL EA
Sbjct: 441 VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREA 500
Query: 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537
E+I +P +N +I +G+L+SACRI+G +++G+ A + ++E L++NIY
Sbjct: 501 LEVIESMPVASNVVI---WGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIY 557
Query: 538 ASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMA 597
A RWEDV N+R+ M+E V K G S I+ NG HEFL+GD H + EIY+ LD +
Sbjct: 558 AREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVV 617
Query: 598 KTL 600
L
Sbjct: 618 SKL 620
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| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 219/593 (36%), Positives = 347/593 (58%)
Query: 10 QIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAXXXXX 69
Q+F Q+N T N ++ T G L A+ +F S+ +N ++ FA
Sbjct: 76 QVFDKMPQRNIYTWNSVVTGLT--KLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRC 133
Query: 70 XXXXXXXXXXXERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSI 129
+ G + +++ V A L ++ KG +VH + K+ D Y+ +++
Sbjct: 134 EEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193
Query: 130 MDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPD 189
+DMY G + + +++FDEM D++VVSWN I+ + +A+DVF+ M + + PD
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLES-RVEPD 252
Query: 190 EGTVVSTLSACTALKNLELGKEIH-RYI-NQELEFTPIMGNALLDMYCKCGCLSEARELF 247
E T+ S +SAC +L +++G+E+H R + N +L I+ NA +DMY KC + EAR +F
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 248 DEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307
D MP +NVI TSM+SGY + AR +F + R++V W A+I GY Q +EA++
Sbjct: 313 DSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALS 372
Query: 308 LFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITV------DAVVATA 361
LF ++ + P + +L CA L L G H ++ ++ D V +
Sbjct: 373 LFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS 432
Query: 362 LIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD 421
LI+MY KCG +E+ +F ++ E+D SW ++I G A NG N+ALELF +M+ G KPD
Sbjct: 433 LIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD 492
Query: 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELI 481
IT IGVLSAC H G V+EGR +F++MT + + P +HY C++DLLGRAG L+EA+ +I
Sbjct: 493 HITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMI 552
Query: 482 RKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541
++P + + +I +G+LL+AC+++ N+ +G+ +A L ++E +S + LL+N+YA
Sbjct: 553 EEMPMQPDSVI---WGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELG 609
Query: 542 RWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLD 594
+WEDV NVR+ M++ GV K PGCS I+I G H F+V D SH K+I+S+LD
Sbjct: 610 KWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLD 662
|
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| TAIR|locus:2084963 AT3G04750 "AT3G04750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 220/615 (35%), Positives = 346/615 (56%)
Query: 3 QLKQIQAQIFQIGLQQNPETLNKLMVFC--THPSHGNLLYAEKIFGSIQ-SPCLLAYNLL 59
Q KQ+ AQI + L + +++L+ F T+P NL A+ +F + +P + YN +
Sbjct: 49 QFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPE--NLDLAKLLFLNFTPNPNVFVYNTM 106
Query: 60 IKAFAXXXXXXXXXXXXXXXXERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTG- 118
I A + VSPD T+ ++ KA +L EVK+ +H +++ +G
Sbjct: 107 ISAVSSSKNECFGLYSSMIRHR--VSPDRQTFLYLMKASSFLSEVKQ---IHCHIIVSGC 161
Query: 119 LEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFR 178
L Y+ NS++ Y LG +K+F MP DV S+NV I G+ K +A+ ++
Sbjct: 162 LSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYF 221
Query: 179 RMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE---LEFTPIMGNALLDMYC 235
+M + PDE TV+S L C L ++ LGK +H +I + I+ NALLDMY
Sbjct: 222 KMVSD-GIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYF 280
Query: 236 KCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMING 295
KC A+ FD M K++ W +MV G+V G +E A+ +FD+ P RD+V W +++ G
Sbjct: 281 KCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFG 340
Query: 296 YVQFNRFDEAVA-LFREMQII-RLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT 353
Y + V LF EM I+ ++KPD+ +V+L++G A G L G+W+HG + ++
Sbjct: 341 YSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLK 400
Query: 354 VDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQM 413
DA +++ALI+MY KCG+IE+A +F EKD A WTS+I GLA +G +AL+LF +M
Sbjct: 401 GDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRM 460
Query: 414 ISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473
G P+++T + VL+ACSH GLV+EG FN M + + P+ EHYG L+DLL RAG
Sbjct: 461 QEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGR 520
Query: 474 LDEAEELI-RKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTL 532
++EA++++ +K+P ++ ++G++LSACR +++ E L K+E + + L
Sbjct: 521 VEEAKDIVQKKMPMRPSQ---SMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVL 577
Query: 533 LANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIE-INGIIHEFLVGD----PSHSEMK 587
L+NIYA+ RW R+ M+ GV+K G SS+ + G+ H F+ + P +E+K
Sbjct: 578 LSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGL-HRFVAAEKQNHPRWTEIK 636
Query: 588 EIYSMLDRMAKTLLD 602
I L K LD
Sbjct: 637 RILQHLYNEMKPKLD 651
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| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 196/498 (39%), Positives = 293/498 (58%)
Query: 108 EKVHGYVVKTGLEFDTYVCNSIMD--MYGVLGKICNVKKL-FDEMPDKDVVSWNVSISGH 164
+++H ++KTGL D+Y + + ++ FD D WN+ I G
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90
Query: 165 VKCMRFEDAVDVFRRMRQGCNLMPDEG-TVVSTLSACTALKNLELGKEIHRYINQ-ELEF 222
E ++ +++RM C+ P T S L AC+ L E +IH I + E
Sbjct: 91 SCSDEPERSLLLYQRML--CSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEN 148
Query: 223 TPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSP 282
N+L++ Y G A LFD +P + + W S++ GYV G+++ A LF +
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208
Query: 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKW 342
++ + WT MI+GYVQ + EA+ LF EMQ ++PD L L+ CAQLGALEQGKW
Sbjct: 209 EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 268
Query: 343 IHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGK 402
IH Y+N+ RI +D+V+ LI+MYAKCG +E+ALE+F +++K +WT++I G A +G
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328
Query: 403 INKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYG 462
+A+ F +M G KP+ ITF VL+ACS+ GLV+EG+ F +M Y ++P +EHYG
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388
Query: 463 CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522
C++DLLGRAGLLDEA+ I+++P + N +I +GALL ACRI+ N+++GE++ +L I
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVI---WGALLKACRIHKNIELGEEIGEILIAI 445
Query: 523 ESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPS 582
+ + ANI+A +W+ R+ MKE GV KVPGCS+I + G HEFL GD S
Sbjct: 446 DPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRS 505
Query: 583 HSEMKEIYSMLDRMAKTL 600
H E+++I S M + L
Sbjct: 506 HPEIEKIQSKWRIMRRKL 523
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| TAIR|locus:2129361 AT4G14050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 188/494 (38%), Positives = 302/494 (61%)
Query: 110 VHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMR 169
+H ++VK G+ + N+++++YG G + ++FDEMP +D ++W ++ +
Sbjct: 25 LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 84
Query: 170 FEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIH-RYINQELEFTPIMGN 228
+ VF + L PD+ + + AC L +++ G+++H +I E ++ +
Sbjct: 85 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKS 144
Query: 229 ALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVL 288
+L+DMY KCG L+ A+ +FD + KN I WT+MVSGY G+ E+A +LF PV+++
Sbjct: 145 SLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYS 204
Query: 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKP-DKFILVALLTGCAQLGALEQGKWIHGYI 347
WTA+I+G+VQ + EA ++F EM+ R+ D +L +++ CA L A G+ +HG +
Sbjct: 205 WTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLV 264
Query: 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKAL 407
++ ALI+MYAKC + A +IF +R +D SWTS+I G+A +G+ KAL
Sbjct: 265 IALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKAL 324
Query: 408 ELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467
L+ M+S G KP+++TF+G++ ACSH G V++GR F +MT+ Y I+P L+HY CL+DL
Sbjct: 325 ALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDL 384
Query: 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAA-LLEKIESKD 526
LGR+GLLDEAE LI +P +E P + ALLSAC+ G MG ++A L+ + KD
Sbjct: 385 LGRSGLLDEAENLIHTMPFPPDE---PTWAALLSACKRQGRGQMGIRIADHLVSSFKLKD 441
Query: 527 SSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEM 586
S + LL+NIYASA+ W V+ R+K+ EM VRK PG SS+E+ F G+ SH
Sbjct: 442 PSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLK 501
Query: 587 KEIYSMLDRMAKTL 600
++I+ +L ++ + +
Sbjct: 502 EDIFRLLKKLEEEM 515
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C866 | PPR65_ARATH | No assigned EC number | 0.6283 | 0.8966 | 0.9736 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016827001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (618 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 619 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-142 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-105 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-77 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-56 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-42 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-29 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 433 bits (1114), Expect = e-142
Identities = 220/619 (35%), Positives = 348/619 (56%), Gaps = 57/619 (9%)
Query: 5 KQIQAQIFQIGLQQNPETLNKLM---VFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIK 61
+++ A + + G + + + +N L+ V C G+++ A +F + +++N +I
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKC-----GDVVSARLVFDRMPRRDCISWNAMIS 261
Query: 62 AFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEF 121
+ + G + L LF +RE V PD T V A LG+ + G ++HGYVVKTG
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 122 DTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMR 181
D VCNS++ MY LG +K+F M KD VSW ISG+ K + A++ + M
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 182 QGCNLMPDEGTVVSTLSACTALKNLELGKEIHRY-INQELEFTPIMGNALLDMYCKCGCL 240
Q N+ PDE T+ S LSAC L +L++G ++H + L ++ NAL++MY KC C+
Sbjct: 382 QD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN 300
+A E+F +P K+VI WTS+++G +N N
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGL--------------------------RLN-----N 469
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
R EA+ FR+M ++ LKP+ L+A L+ CA++GAL GK IH ++ I D +
Sbjct: 470 RCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
AL+++Y +CG + A F EKD SW ++ G +GK + A+ELF++M+ G P
Sbjct: 529 ALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480
D++TFI +L ACS G+V +G +F++M E Y I P L+HY C++DLLGRAG L EA
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
Query: 481 IRKIPNENNEIIVP---LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537
I K+P I P ++GALL+ACRI+ +V++GE A + +++ ++ LL N+Y
Sbjct: 648 INKMP------ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701
Query: 538 ASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLD--- 594
A A +W++V VR+ M+E G+ PGCS +E+ G +H FL D SH ++KEI ++L+
Sbjct: 702 ADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761
Query: 595 -RMAKT-LLDSKQNAMEGD 611
+M + L S+ ++M+
Sbjct: 762 EKMKASGLAGSESSSMDEI 780
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (857), Expect = e-105
Identities = 170/545 (31%), Positives = 285/545 (52%), Gaps = 45/545 (8%)
Query: 60 IKAFAKKGSFRKSLLLFSKLRERG-VSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTG 118
I+ G R++L LF L + TY + +A L ++ + V+ +V +G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 119 LEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFR 178
E D Y+ N ++ M+ G + + ++LFDEMP++++ SW I G V + +A +FR
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 179 RMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGN-----ALLDM 233
M + + T V L A L + G+++H + + T ++G+ AL+DM
Sbjct: 214 EMWEDGSDAEPR-TFVVMLRASAGLGSARAGQQLHCCVLK----TGVVGDTFVSCALIDM 268
Query: 234 YCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMI 293
Y KCG + +AR +FD MP K + W SM++GY +
Sbjct: 269 YSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA--------------------------L 302
Query: 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT 353
+GY + EA+ L+ EM+ + D+F ++ ++L LE K H +
Sbjct: 303 HGYSE-----EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 354 VDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQM 413
+D V TAL+++Y+K G +E A +F + K+ SW ++I G +G+ KA+E+F +M
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 414 ISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473
I+ G P+ +TF+ VLSAC + GL ++G F +M+E ++I+P+ HY C+I+LLGR GL
Sbjct: 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477
Query: 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLL 533
LDEA +IR+ P + V ++ ALL+ACRI+ N+++G A L + + + + +L
Sbjct: 478 LDEAYAMIRRAPFKPT---VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534
Query: 534 ANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSML 593
N+Y S+ R + V + +K G+ P C+ IE+ H F GD H + +EIY L
Sbjct: 535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594
Query: 594 DRMAK 598
D + K
Sbjct: 595 DELMK 599
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 2e-77
Identities = 137/408 (33%), Positives = 222/408 (54%), Gaps = 34/408 (8%)
Query: 36 GNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVF 95
G L++A +FG + L ++N+L+ +AK G F ++L L+ ++ GV PD +T+P V
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 96 KAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVV 155
+ G + ++ +G +VH +VV+ G E D V N+++ MY G + + + +FD MP +D +
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI 254
Query: 156 SWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRY 215
SWN ISG+ + + +++F MR ++ PD T+ S +SAC L + LG+E+H Y
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 216 INQELEFTPI-MGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKA 274
+ + + + N+L+ MY G EA ++F M K+ + WT+M+SGY
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK------- 366
Query: 275 RDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQL 334
NG D+A+ + M+ + PD+ + ++L+ CA L
Sbjct: 367 -------------------NGLP-----DKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSII 394
G L+ G +H + VVA ALIEMY+KC I+KALE+F+ + EKD SWTSII
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462
Query: 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGR 442
GL +N + +AL F QM+ KP+ +T I LSAC+ G + G+
Sbjct: 463 AGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGK 509
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 1e-56
Identities = 123/439 (28%), Positives = 208/439 (47%), Gaps = 46/439 (10%)
Query: 57 NLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVK 116
N ++A G ++L L ++E V D Y +F+ W V++G +V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 117 TGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDV 176
+ + N+++ M+ G++ + +F +MP++D+ SWNV + G+ K F++A+ +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 177 FRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQ---ELEFTPIMGNALLDM 233
+ RM + PD T L C + +L G+E+H ++ + EL+ + NAL+ M
Sbjct: 175 YHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV--NALITM 231
Query: 234 YCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMI 293
Y KCG + AR +FD MP RD + W AMI
Sbjct: 232 YVKCGDVVSARLVFDRMP-------------------------------RRDCISWNAMI 260
Query: 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT 353
+GY + E + LF M+ + + PD + ++++ C LG G+ +HGY+ +
Sbjct: 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320
Query: 354 VDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQM 413
VD V +LI+MY G +A ++F + KDA SWT++I G NG +KALE ++ M
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 414 ISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY----GCLIDLLG 469
PD+IT VLSAC+ G +D G + L Y LI++
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVG-----VKLHELAERKGLISYVVVANALIEMYS 435
Query: 470 RAGLLDEAEELIRKIPNEN 488
+ +D+A E+ IP ++
Sbjct: 436 KCKCIDKALEVFHNIPEKD 454
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 3e-43
Identities = 98/350 (28%), Positives = 171/350 (48%), Gaps = 34/350 (9%)
Query: 28 VFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPD 87
V H G L+ A ++F + L ++ +I G++R++ LF ++ E G +
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 88 NFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFD 147
T+ + +A LG + G+++H V+KTG+ DT+V +++DMY G I + + +FD
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 148 EMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLE 207
MP+K V+WN ++G+ E+A+ ++ MR + D+ T + + L LE
Sbjct: 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLE 342
Query: 208 LGKEIHRYINQELEFTPIMGN-ALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYV 266
K+ H + + I+ N AL+D+Y K G + +AR +FD MP KN+I W ++++GY
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402
Query: 267 NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVA 326
N G R +AV +F M + P+ +A
Sbjct: 403 NHG-------------------------------RGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 327 LLTGCAQLGALEQGKWIHGYINEN-RITVDAVVATALIEMYAKCGLIEKA 375
+L+ C G EQG I ++EN RI A+ +IE+ + GL+++A
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-42
Identities = 104/381 (27%), Positives = 171/381 (44%), Gaps = 48/381 (12%)
Query: 147 DEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNL 206
D K VS I V C R +A+++F + GC T + + AC ALK++
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 207 ELGKEIHRY-INQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGY 265
K ++ + + E M N +L M+ KCG L +AR LFDEMP +N+ W +++ G
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199
Query: 266 VNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV 325
V+ G EA ALFREM + V
Sbjct: 200 VDAGNYR-------------------------------EAFALFREMWEDGSDAEPRTFV 228
Query: 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK 385
+L A LG+ G+ +H + + + D V+ ALI+MY+KCG IE A +F + EK
Sbjct: 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288
Query: 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445
+W S++ G A++G +AL L+ +M G D TF ++ S L++ ++
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 446 NTMTEVYQIQPKLE----HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLS 501
+ I+ L+DL + G +++A + ++P +N +I + AL++
Sbjct: 349 AGL-----IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN--LIS--WNALIA 399
Query: 502 ACRIYGNVDMGEKLAALLEKI 522
YGN G K + E++
Sbjct: 400 G---YGNHGRGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 4e-29
Identities = 92/368 (25%), Positives = 154/368 (41%), Gaps = 68/368 (18%)
Query: 188 PDEGTVVSTLSACTALKNLELGKEIHRYINQEL-EFTPIMGNALLDMYCKCGCLSEAREL 246
DE V+ C + +E G + +GNA+L M+ + G L A +
Sbjct: 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143
Query: 247 FDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAV 306
F +MP +++ W +V GY G ++A L+ R +LW +
Sbjct: 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR------MLWAGV-------------- 183
Query: 307 ALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMY 366
+PD + +L C + L +G+ +H ++ +D V ALI MY
Sbjct: 184 -----------RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 367 AKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFI 426
KCG + A +F + +D SW ++I G NG+ + LELF M PD +T
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 427 GVLSACS-----------HGGLVDEGR----RFFNTMTEVY----------QIQPKLE-- 459
V+SAC HG +V G N++ ++Y ++ ++E
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 460 ---HYGCLIDLLGRAGLLDEAEELIRKIPNEN---NEIIVPLYGALLSACRIYGNVDMGE 513
+ +I + GL D+A E + +N +EI + ++LSAC G++D+G
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI---ASVLSACACLGDLDVGV 409
Query: 514 KLAALLEK 521
KL L E+
Sbjct: 410 KLHELAER 417
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 6e-22
Identities = 71/280 (25%), Positives = 137/280 (48%), Gaps = 9/280 (3%)
Query: 36 GNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVF 95
G++ A +F + +A+N ++ +A G ++L L+ ++R+ GVS D FT+ +
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 96 KAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVV 155
+ L ++ ++ H +++TG D +++D+Y G++ + + +FD MP K+++
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 156 SWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRY 215
SWN I+G+ R AV++F RM + P+ T ++ LSAC E G EI +
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 216 INQELEFTP-IMGNA-LLDMYCKCGCLSEARELFDEMPNK-NVICWTSMVSGYVNCGQLE 272
+++ P M A ++++ + G L EA + P K V W ++++ LE
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511
Query: 273 KAR----DLFDRSPVRDIVLWTAMINGYVQFNRFDEAVAL 308
R L+ P + + + ++N Y R EA +
Sbjct: 512 LGRLAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEAAKV 550
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 42/300 (14%)
Query: 291 AMINGYVQFNRFDEAVALFREMQI-IRLKPDKFILVALLTGCAQLGALEQGKWIHGYINE 349
+ I V R EA+ LF ++ AL+ C L ++ K ++ ++
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 350 NRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALEL 409
+ D + ++ M+ KCG++ A +F E+ E++ ASW +II GL G +A L
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211
Query: 410 FSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTM--TEVYQIQPKLEHYGC-LID 466
F +M G+ + TF+ +L A + G G++ + T V C LID
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT----FVSCALID 267
Query: 467 LLGRAGLLDEAEELIRKIPNEN----NEIIV--PLYGALLSACRIY-----GNVDMGE-- 513
+ + G +++A + +P + N ++ L+G A +Y V + +
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 514 ---------KLAALLEKIESKDSSF-----------HTLLANIYASANRWEDVTNVRQKM 553
+L ALLE + + +T L ++Y+ R ED NV +M
Sbjct: 328 FSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-14
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 12/217 (5%)
Query: 352 ITVDAVVATALIEMYAKCGLIEKALEIFYELR----EKDAASWTSIICGLAMNGKINKAL 407
+ D + T LI AK G ++ E+F+E+ E + ++ ++I G A G++ KA
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 408 ELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV----YQIQPKLEHYGC 463
+ M S KPD + F ++SAC G VD R F+ + E+ + I P G
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVD---RAFDVLAEMKAETHPIDPDHITVGA 584
Query: 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523
L+ AG +D A+E+ + I N + +Y +++C G+ D + ++K
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 524 SK-DSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559
K D F + L ++ A + + Q ++ G++
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 35/286 (12%)
Query: 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360
+ ++A+ L MQ +R+ D+ VAL C A+E+G + + ++ +
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125
Query: 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP 420
A++ M+ + G + A +F ++ E+D SW ++ G A G ++AL L+ +M+ G +P
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 421 DDITFIGVLSACSHGGLVDEGR-RFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEE 479
D TF VL C GG+ D R R + + + ++ LI + + G + A
Sbjct: 186 DVYTFPCVLRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 480 LIRKIPN--------------ENNEIIVPL-----------------YGALLSACRIYGN 508
+ ++P EN E + L +++SAC + G+
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 509 VDMGEKLAALLEKIE-SKDSSFHTLLANIYASANRWEDVTNVRQKM 553
+G ++ + K + D S L +Y S W + V +M
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 62/285 (21%), Positives = 129/285 (45%), Gaps = 16/285 (5%)
Query: 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIH 344
D L+T +I+ + + D +F EM ++ + AL+ GCA+ G + + +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 345 GYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK------DAASWTSIICGLA 398
G + + D VV ALI + G +++A ++ E++ + D + +++ A
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 399 MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL 458
G++++A E++ + K + +++CS G D ++ M + ++P
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDE 649
Query: 459 EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAAL 518
+ L+D+ G AG LD+A E+++ + ++ Y +L+ AC N +K L
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC---SNAKNWKKALEL 706
Query: 519 LEKIESKD-----SSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558
E I+S S+ + L+ + N+ V +MK +G+
Sbjct: 707 YEDIKSIKLRPTVSTMNALITAL-CEGNQLPKALEVLSEMKRLGL 750
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 385 KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH 434
D ++ ++I G GK+ +AL+LF++M G KP+ T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ 333
D+V + +I+GY + + +EA+ LF EM+ +KP+ + L+ G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 51 PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTY 91
P ++ YN LI + KKG ++L LF+++++RG+ P+ +TY
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 57/254 (22%), Positives = 115/254 (45%), Gaps = 15/254 (5%)
Query: 228 NALLDMYCKCGCLSEARELFDEM-----PNK-NVICWTSMVSGYVNCGQLEKARDLFDRS 281
NAL+ + G + A ++ EM P + I +++ N GQ+++A++++
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
Query: 282 PVRDI----VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGAL 337
+I ++T +N Q +D A++++ +M+ +KPD+ AL+ G L
Sbjct: 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665
Query: 338 EQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR----EKDAASWTSI 393
++ I + I + V ++L+ + +KALE++ +++ ++ ++
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 394 ICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQ 453
I L ++ KALE+ S+M G P+ IT+ +L A D G + E
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DG 784
Query: 454 IQPKLEHYGCLIDL 467
I+P L C+ L
Sbjct: 785 IKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 228 NALLDMYCKCGCLSEARELFDEMPNK----NVICWTSMVSGYVN 267
N L+D YCK G + EA +LF+EM + NV ++ ++ G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 8/173 (4%)
Query: 403 INKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYG 462
I+ AL + + G K D + ++S C+ G VD F+ M ++ + +G
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFG 511
Query: 463 CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMG-EKLAALLEK 521
LID RAG + +A + ++N + ++ AL+SAC G VD + LA + K
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM--K 569
Query: 522 IESK--DSSFHTLLANIYASAN--RWEDVTNVRQKMKEMGVRKVPGCSSIEIN 570
E+ D T+ A + A AN + + V Q + E ++ P +I +N
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 92/447 (20%), Positives = 172/447 (38%), Gaps = 74/447 (16%)
Query: 16 LQQNP--ETLNKLMVFCTHPSHGNLLYAEKIFGSIQ-----------SPCLLAYNLLIKA 62
L +NP T N LM C ++ I G+++ + C L Y LI
Sbjct: 431 LIRNPTLSTFNMLMSVCAS--------SQDIDGALRVLRLVQEAGLKADCKL-YTTLIST 481
Query: 63 FAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFD 122
AK G +F ++ GV + T+ + G+V K +G + ++ D
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 123 TYVCNSIMDMYGVLGKICNVKKLFD---EMP------DKDVVSWNVSISGHVKCMRFEDA 173
V N+++ G G V + FD EM D D ++ + + + A
Sbjct: 542 RVVFNALISACGQSGA---VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 174 VDVFRRMRQ-GCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTP--IMGNAL 230
+V++ + + P+ T+ +++C+ + + I+ + + P + +AL
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIA--VNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSAL 655
Query: 231 LDMYCKCGCLSEARELFDEMPNKNV----ICWTSMVSGYVNCGQLEKARDLFDRSPVRDI 286
+D+ G L +A E+ + + + + ++S++ N +KA +L++ ++ I
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED--IKSI 713
Query: 287 VL------WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGC-----AQLG 335
L A+I + N+ +A+ + EM+ + L P+ LL A +G
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
Query: 336 --ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSI 393
L Q K G I N + + L C L E + F R + WTS
Sbjct: 774 LDLLSQAK-EDG-IKPNLVMCRCITGLCLRRFEKACALGEPVVS-FDSGRPQIENKWTS- 829
Query: 394 ICGLAMNGKINKALELFSQMISGGAKP 420
AL ++ + IS G P
Sbjct: 830 -----------WALMVYRETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 287 VLWTAMINGYVQFNRFDEAVALFREMQ 313
V + ++I+GY + + +EA+ LF+EM+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 253 KNVICWTSMVSGYVNCGQLEKARDLFDR------SPVRDIVLWTAMINGY 296
+V+ + +++ GY G++E+A LF+ P ++ ++ +I+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP--NVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDD 422
++ ++I GL G++ +ALELF +M G +PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 152 KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSAC 200
DVV++N I G+ K + E+A+ +F M++ + P+ T +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 228 NALLDMYCKCGCLSEARELFDEMPNKNV 255
N+L+ YCK G L EA ELF EM K V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 55 AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPD 87
YN LI K G ++L LF +++ERG+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQ 313
D+V + +I+G + R DEAV L EM+
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 6e-04
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 228 NALLDMYCKCGCLSEARELFDEMP 251
N L+D C+ G + EA EL DEM
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 389 SWTSIICGLAMNGKINKALELFSQMISGG 417
++ S+I G GK+ +ALELF +M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD 320
V + +I+G + R +EA+ LF+EM+ ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 228 NALLDMYCKCGCLSEARELFDEMPNKNV 255
N L+D CK G + EA ELF EM + +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 56 YNLLIKAFAKKGSFRKSLLLFSKLRERGVSP 86
YN L+ A AK G +L + +++ G+ P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 619 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.31 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.06 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.02 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.87 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.37 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.33 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.19 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.87 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.87 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.85 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.78 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.71 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.64 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.53 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.44 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.41 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.4 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.38 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.31 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.3 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.29 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.27 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.25 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.15 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.04 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.02 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.97 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.94 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.87 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.83 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.81 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.81 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.69 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.67 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.27 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.92 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.75 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.74 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.73 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.73 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.54 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.48 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.43 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.41 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.37 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.02 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.01 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.99 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.96 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.74 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.68 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.64 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.48 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.4 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.34 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.22 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.14 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.08 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.02 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.85 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.76 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.6 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.59 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.43 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.4 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.22 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.09 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.98 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.65 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.57 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.39 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.37 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.29 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.22 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.86 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.7 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.23 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.97 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.85 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.84 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.82 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.67 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.46 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.38 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.94 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.89 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.73 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.72 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.22 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.06 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.99 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.33 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.28 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.26 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.22 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.06 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.98 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.97 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.82 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.62 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.57 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.29 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.21 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.77 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.21 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.98 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.94 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.79 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.72 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.7 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 84.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.03 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 84.0 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.81 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.75 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 83.71 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.21 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.18 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 82.88 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.82 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.45 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 82.26 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 82.17 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.75 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.34 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.05 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.81 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.03 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-92 Score=766.19 Aligned_cols=598 Identities=35% Similarity=0.671 Sum_probs=572.1
Q ss_pred chHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 2 TQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
+.+.++|..+.+.|..++..++|.|+.+|+ +.|+++.|+++|++|++||+++||.+|.+|++.|++++|+++|++|..
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~~--~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~ 180 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFV--RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHH--hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHH
Q 007077 82 RGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSI 161 (619)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 161 (619)
.|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++|.|+.+|+++|+++.|.++|++|++||.++||++|
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li 260 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI 260 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCCh
Q 007077 162 SGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 240 (619)
.+|++.|++++|+++|++|.. .|+.||..||+.++.+|+..|+.+.+.+++..+.+. +.||..+|++|+.+|+++|++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 999999999999999999999 899999999999999999999999999999999998 999999999999999999999
Q ss_pred hhHHHHhccCCCCCchhHHHHHHHHH------------------------------------------------------
Q 007077 241 SEARELFDEMPNKNVICWTSMVSGYV------------------------------------------------------ 266 (619)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~li~~~~------------------------------------------------------ 266 (619)
++|.++|++|.+||.++|+.+|.+|+
T Consensus 340 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99999999999888888887777777
Q ss_pred ----------------hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007077 267 ----------------NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTG 330 (619)
Q Consensus 267 ----------------~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (619)
++|++++|.++|++|..+|+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 455666666666667777888888888888888999999999999975 699999999999999
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 331 CAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc
Q 007077 411 SQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE 490 (619)
Q Consensus 411 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 490 (619)
++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|++++++|+++|++++|.+++++|+..
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~--- 654 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT--- 654 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC---
Confidence 99999999999999999999999999999999999999977799999999999999999999999999999999744
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEEC
Q 007077 491 IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEIN 570 (619)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 570 (619)
|+..+|++|+.+|..+|+.+.|+...+++.+++|+++..|..|+++|...|+|++|.++++.|++.|+++.||+|||+++
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 571 GIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
++++.|.++|.+||+.++||..|+.+..+|++.|++-
T Consensus 735 ~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 735 GKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred CEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 9999999999999999999999999999999999874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-80 Score=657.30 Aligned_cols=524 Identities=32% Similarity=0.536 Sum_probs=501.2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCC-CCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHH
Q 007077 50 SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERG-VSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNS 128 (619)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 128 (619)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH
Q 007077 129 IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL 208 (619)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 208 (619)
|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|+..|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChh
Q 007077 209 GKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV 287 (619)
Q Consensus 209 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 287 (619)
+.+++..+.+. +.+|..++++|+++|+++|++++|.++|++|. .+|++
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------~~~~v 291 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------EKTTV 291 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------CCChh
Confidence 99999999888 88888888888888888888888887666654 55778
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYA 367 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (619)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|++|+..++++|+++|+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 368 KCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.
T Consensus 372 k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
|.+.+++.|+..+|++++++|+++|++++|.+++++|... |+..+|++++.+|..+|+++.|+.+++++.++.|++.
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~---p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 9988899999999999999999999999999999998644 4556699999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 528 SFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
..|..|+++|.+.|+|++|.+++++|++.|+.+.||++|+++++.++.|.+++..||+.+++|..+.++..+|++.|++-
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~ 608 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVA 608 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred c
Q 007077 608 M 608 (619)
Q Consensus 608 ~ 608 (619)
.
T Consensus 609 ~ 609 (697)
T PLN03081 609 E 609 (697)
T ss_pred C
Confidence 3
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=599.50 Aligned_cols=587 Identities=22% Similarity=0.303 Sum_probs=506.2
Q ss_pred chHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccC----CCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007077 2 TQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSI----QSPCLLAYNLLIKAFAKKGSFRKSLLLFS 77 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 77 (619)
+++.+++..|.+.|++|+..+|..++..|. +.+.++.+.+++..+ ..+++..+|++|..|++.|+.+.|+++|+
T Consensus 68 ~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~ 145 (857)
T PLN03077 68 EQALKLLESMQELRVPVDEDAYVALFRLCE--WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145 (857)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHh--hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh
Confidence 467889999999999999999999999999 899999999999754 46788999999999999999999999999
Q ss_pred HhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCC----CCC
Q 007077 78 KLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP----DKD 153 (619)
Q Consensus 78 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~ 153 (619)
+|. +||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.+++..+.+++..+. .+|
T Consensus 146 ~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 146 KMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred cCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 996 479999999999999999999999999999999999999999999999999999999999988876 489
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHH
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLD 232 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~ 232 (619)
+.+||++|.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|..++..|.+. +.||..+|+.++.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999954 78899999999999999999999999999988 9999999999999
Q ss_pred HHHhcCChhhHHHHhccCCC----CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPN----KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVAL 308 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 308 (619)
++++.|+++.|.+++..|.+ ||..+|+.++.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999875 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChh
Q 007077 309 FREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAA 388 (619)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 388 (619)
|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|.+
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-------------
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ------------- 455 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------------- 455 (619)
+|++++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|.++.+.+++..+.+. |+.
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y 534 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLY 534 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHH
Confidence 999999999999999999999999986 58999999999999888888888888887777654 554
Q ss_pred -----------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007077 456 -----------------PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAAL 518 (619)
Q Consensus 456 -----------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (619)
||..+|+.|+.+|++.|+.++|+++|++|...+..|+..||++++.+|.+.|++++|.++|+.
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 555666677777777777777777777777666666666777777777777777777777777
Q ss_pred HhccC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCce-------eEEEECCEEEEEEeC--CCCCCchH
Q 007077 519 LEKIE--SKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGC-------SSIEINGIIHEFLVG--DPSHSEMK 587 (619)
Q Consensus 519 ~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~ 587 (619)
|.+.. .++...|.+++++|.+.|++++|.+++++|. +.|++.. ..++-+....+.... -...|...
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 75221 2233447777777777777777777777764 3333211 001111111111110 02467777
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007077 588 EIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 588 ~~~~~l~~~~~~~~~~~ 604 (619)
..|..|.++|....+..
T Consensus 692 ~~y~ll~n~ya~~g~~~ 708 (857)
T PLN03077 692 GYYILLCNLYADAGKWD 708 (857)
T ss_pred chHHHHHHHHHHCCChH
Confidence 78888887775444433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-67 Score=556.86 Aligned_cols=508 Identities=18% Similarity=0.257 Sum_probs=367.7
Q ss_pred CChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCc-----ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHH
Q 007077 18 QNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCL-----LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYP 92 (619)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 92 (619)
++...|..++..++ +.|++++|.++|++|+.++. ..++.++..|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 368 ~~~~~~~~~y~~l~--r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 368 RKSPEYIDAYNRLL--RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCchHHHHHHHHHH--HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 33445555555555 56666666666666653332 2334445556666666666666665543 5666666
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCC----CCCeecHHHHHHHHHcCC
Q 007077 93 FVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP----DKDVVSWNVSISGHVKCM 168 (619)
Q Consensus 93 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 168 (619)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|. .||..+|+++|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 6666666666666666666666666666666666666666666666666666666665 355666666666666666
Q ss_pred ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH--h-ccCChhHHHHHHHHHHhcCChhhHHH
Q 007077 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQ--E-LEFTPIMGNALLDMYCKCGCLSEARE 245 (619)
Q Consensus 169 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (619)
++++|+++|+.|.. .|+.||..+|+.++.+|++.|+++.|.++++.|.. . +.||..+|++++.+|+++|++++|.+
T Consensus 522 ~~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 522 QVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666655 56666666666666665555555555555555543 1 45555555555555555555555555
Q ss_pred HhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 007077 246 LFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV 325 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 325 (619)
+|+.|.+.+ ..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 601 lf~~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 601 VYQMIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred HHHHHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 555543321 25577888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhCC
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR----EKDAASWTSIICGLAMNG 401 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g 401 (619)
.++.+|++.|++++|.++++.|.+.|+.|+..+|++|+.+|+++|++++|.++|++|. .||..+|++||.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 8888888888888888888888888888888888888888888888888888888884 578888888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH----hc------
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG----RA------ 471 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~------ 471 (619)
++++|.++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++..+. ++
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 88888888888888888888888888888888888888888888888776 88888888888876533 22
Q ss_pred -------------CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCcchHHHHHHHH
Q 007077 472 -------------GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE-KIESKDSSFHTLLANIY 537 (619)
Q Consensus 472 -------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~ 537 (619)
+..++|..+|++|...+..|+..+|+.++.++.+.+..+.+..+++.+. ...+++..+|..+++.+
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 2346799999999999999999999999988888899999988888764 34556677799999987
Q ss_pred HhCCChHHHHHHHHHHHhCCCcccC
Q 007077 538 ASANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
.+. .++|..++++|...|+.|..
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCCc
Confidence 432 36899999999999998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=540.91 Aligned_cols=490 Identities=17% Similarity=0.225 Sum_probs=406.6
Q ss_pred chHHHHHHHHHHhCC-CCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhH
Q 007077 2 TQLKQIQAQIFQIGL-QQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLR 80 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 80 (619)
+.+.++++.|.+.|+ +++..+++.++..|. +.|.+++|.++|+.|+.||..+||.+|.+|++.|+++.|.++|++|.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~--~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACK--KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHH--HCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 568899999999995 678888999999999 99999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCC----CCCeec
Q 007077 81 ERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP----DKDVVS 156 (619)
Q Consensus 81 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 156 (619)
+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+
T Consensus 465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT 544 (1060)
T PLN03218 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 489999
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHh-cCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHH
Q 007077 157 WNVSISGHVKCMRFEDAVDVFRRMRQ-GCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMY 234 (619)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~ 234 (619)
|+.+|.+|++.|++++|.++|++|.. ..|+.||..+|+.++.+|++.|+++.|.++++.+.+. ++++..+|+.++.+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99999999999999999999999975 2578999999999999999999999999999999998 899999999999999
Q ss_pred HhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007077 235 CKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQI 314 (619)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 314 (619)
++.|++++|.++|++|.+. ...||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 625 ~k~G~~deAl~lf~eM~~~---------------------------Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKK---------------------------GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999999999998652 2245556666666666666666666666666666
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhH
Q 007077 315 IRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR----EKDAASW 390 (619)
Q Consensus 315 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~ 390 (619)
.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666654 2466666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------------------cCcHHHHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH-----------------------GGLVDEGRRFFNT 447 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~ 447 (619)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ .+..+.|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 66666666666666666666666666666666666666544321 1224679999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
|.+. |+.||..+|+.++.++.+.+..+.+..+++.|...+..++..+|++++.++.+. .++|..++++|...+
T Consensus 838 M~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 838 TISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9987 999999999999999989999999999999998888888888899999987432 468999999996443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=513.28 Aligned_cols=418 Identities=24% Similarity=0.439 Sum_probs=396.0
Q ss_pred chHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 2 TQLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
+.++++|..|.+.|+.||+.+||.|+.+|+ +.|+++.|+++|++|+.||+++||.+|.+|++.|++++|+++|++|.+
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHV--KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHh--cCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHH
Q 007077 82 RGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSI 161 (619)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 161 (619)
.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+++.|+++|+++|++++|.++|++|+++|+++||++|
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li 297 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCCh
Q 007077 162 SGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 240 (619)
.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|.++.|.++++.+.+. ++++..++++|+++|+++|++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 999999999999999999998 899999999999999999999999999999999988 889999999999999988888
Q ss_pred hhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 007077 241 SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD 320 (619)
Q Consensus 241 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 320 (619)
++|.++|++|. .+|+.+||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 377 ~~A~~vf~~m~-------------------------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 377 EDARNVFDRMP-------------------------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHHhCC-------------------------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 88888776664 45778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC-CCChhhHHHHHHHHH
Q 007077 321 KFILVALLTGCAQLGALEQGKWIHGYINE-NRITVDAVVATALIEMYAKCGLIEKALEIFYELR-EKDAASWTSIICGLA 398 (619)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~ 398 (619)
..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++|+.+|.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999976 6999999999999999999999999999999986 679999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 399 MNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
..|+.+.|..+++++.+. .|+ ..+|..++..|++.|++++|.++++.|.+. |+.+
T Consensus 506 ~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 999999999999999754 665 569999999999999999999999999887 7654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=321.29 Aligned_cols=539 Identities=12% Similarity=0.029 Sum_probs=387.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhH
Q 007077 4 LKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLR 80 (619)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 80 (619)
+.+.+..+++.. +.++..+..+...+. +.|++++|...++.+. +.+...|+.+...+.+.|++++|.+.|+++.
T Consensus 314 A~~~~~~~~~~~-p~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 314 AYQYLNQILKYA-PNSHQARRLLASIQL--RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 334455556666666 6777777777766543 3345566677777777777777777777776
Q ss_pred HCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecH
Q 007077 81 ERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSW 157 (619)
Q Consensus 81 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 157 (619)
+.. +.+...+..+...+...|++++|...++.+.+.... .......++..|.+.|++++|..+++.+.. ++..+|
T Consensus 391 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 468 (899)
T TIGR02917 391 ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLH 468 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 642 224445556666666777777777777777664422 233445566677777777777777776653 345577
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhc
Q 007077 158 NVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKC 237 (619)
Q Consensus 158 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (619)
..+...+...|++++|...|+++.+ ..+.+...+..+...+...|+++.|...++.+.+..|.+..++..+...+.+.
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALS--IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 7777777788888888888877765 12333445566666677778888888888877777777777777788888888
Q ss_pred CChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 007077 238 GCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFRE 311 (619)
Q Consensus 238 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (619)
|+.++|...|+++.+ .+...+..++..+.+.|++++|...++.+. +.+...|..++.+|...|++++|+..|++
T Consensus 547 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888777654 344566777788888888888888877654 34567788888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---Chh
Q 007077 312 MQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAA 388 (619)
Q Consensus 312 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 388 (619)
+.+.. +.+...+..+..++.+.|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+. +..
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 704 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH
Confidence 77643 2345567777777888888888888888877654 555677778888888888888888888877642 556
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
.+..+...+...|++++|...|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+...+..++..|
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 6777778888888888888888888876 455566777778888888888888888887763 355677788888888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
.+.|++++|.+.|+++... .+.+..+++.+...+...|+ .+|+..++++.+..|+++..+..++.+|...|++++|.+
T Consensus 781 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887732 44456668888888888888 778888888888888888888888888888888888888
Q ss_pred HHHHHHhCC
Q 007077 549 VRQKMKEMG 557 (619)
Q Consensus 549 ~~~~m~~~~ 557 (619)
.++++.+.+
T Consensus 859 ~~~~a~~~~ 867 (899)
T TIGR02917 859 LLRKAVNIA 867 (899)
T ss_pred HHHHHHhhC
Confidence 888887644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=319.27 Aligned_cols=539 Identities=12% Similarity=0.053 Sum_probs=463.9
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKL 79 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 79 (619)
.+.+.+..++... +.++..+..+...|. +.|++++|.+.|++.. +.+...|..+...+...|++++|++.|+.+
T Consensus 347 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 423 (899)
T TIGR02917 347 EAIATLSPALGLD-PDDPAALSLLGEAYL--ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 3445555555443 456778888888888 9999999999998763 456677888889999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeec
Q 007077 80 RERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVS 156 (619)
Q Consensus 80 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 156 (619)
.+... .+......++..+.+.|++++|..+++.+.+. .+++..++..+...|...|++++|.+.|+++.+ .+...
T Consensus 424 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 424 AQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 87642 23445667788889999999999999999874 345677899999999999999999999998754 34557
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 007077 157 WNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCK 236 (619)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (619)
+..+...+...|++++|.+.|+.+.. ..+.+..++..+...+...|+.+.|..+++.+.+..+.+...+..++..|.+
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLT--IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHH
Confidence 78888999999999999999999976 2345667888888889999999999999999988888888899999999999
Q ss_pred cCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHH
Q 007077 237 CGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFR 310 (619)
Q Consensus 237 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 310 (619)
.|++++|..+++.+.+ .+...|..+...+...|++++|...|+++. +.+...+..+...+.+.|++++|...|+
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999875 466789999999999999999999998764 4467789999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChh
Q 007077 311 EMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAA 388 (619)
Q Consensus 311 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 388 (619)
++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.|+++.. ++..
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 737 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ 737 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch
Confidence 998753 3356788899999999999999999999998876 66778888999999999999999999999864 4557
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+.+.+. .+++...++.++..+
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 78889999999999999999999999873 345668888889999999999999999999874 356788899999999
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
...|+ .+|+.+++++... .+.+..++..+...+...|++++|...++++.+..|.++.++..++.+|.+.|++++|.+
T Consensus 815 ~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 8899999988732 233444588899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 007077 549 VRQKMKE 555 (619)
Q Consensus 549 ~~~~m~~ 555 (619)
++++|.+
T Consensus 893 ~~~~~~~ 899 (899)
T TIGR02917 893 ELDKLLN 899 (899)
T ss_pred HHHHHhC
Confidence 9999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-25 Score=245.73 Aligned_cols=413 Identities=12% Similarity=0.013 Sum_probs=327.4
Q ss_pred HHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHH------------
Q 007077 130 MDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVV------------ 194 (619)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~------------ 194 (619)
...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+...-.++...+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4567788999999999998764 3 567888999999999999999999999876222112211121
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--C-CchhHHHHHHHHHhcCCH
Q 007077 195 STLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--K-NVICWTSMVSGYVNCGQL 271 (619)
Q Consensus 195 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 271 (619)
.....+...|++++|...++.+.+..|.+...+..+..+|...|++++|++.|+++.+ | +...+..+...|. .++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 1233567889999999999999999888888999999999999999999999999875 3 3445666777664 4678
Q ss_pred HHHHHHHccCCCCC------------hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHH
Q 007077 272 EKARDLFDRSPVRD------------IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKP-DKFILVALLTGCAQLGALE 338 (619)
Q Consensus 272 ~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~ 338 (619)
++|...++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 99999988765321 223556677888999999999999999875 45 4456778888999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC----h---------hhHHHHHHHHHhCCChHH
Q 007077 339 QGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD----A---------ASWTSIICGLAMNGKINK 405 (619)
Q Consensus 339 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~g~~~~ 405 (619)
+|...++.+.+.. +.++..+..+...+...|+.++|+..++.+.... . ..+..+...+...|++++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999998754 4456666666667788999999999999886431 1 122345677889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 406 ALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 406 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|..+++. . +++...+..+...+...|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++...
T Consensus 592 A~~~l~~---~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ---Q--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh---C--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999872 2 344557777888999999999999999999874 24457889999999999999999999999887
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc------hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 486 NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS------FHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.. .+.+..++..+..++...|++++|.++++++....|+++. .+..++.++...|++++|++.+++..
T Consensus 665 ~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 AT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 3334445777888899999999999999999988776543 56677999999999999999999985
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-25 Score=246.80 Aligned_cols=537 Identities=11% Similarity=0.032 Sum_probs=325.9
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC--CCC-cccH----------------HHHHHHH
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ--SPC-LLAY----------------NLLIKAF 63 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~----------------~~li~~~ 63 (619)
.+++.+.++.... |.++.++..+...+. +.|+.++|.+.+++.. .|+ ...+ ..+.+.+
T Consensus 46 ~a~~~l~kl~~~~-p~~p~~~~~~~~~~l--~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 46 LVRQSLYRLELID-PNNPDVIAARFRLLL--RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred HHHHHHHHHHccC-CCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 4455555554432 345777777778877 8899999988888764 232 2221 2233467
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCccc-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHH
Q 007077 64 AKKGSFRKSLLLFSKLRERGVSPDNFT-YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNV 142 (619)
Q Consensus 64 ~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 142 (619)
.+.|++++|++.|+.+.+.+ +|+... ...........|+.++|...++.+.+... .+...+..+...+...|+.++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHH
Confidence 78889999999999887653 333321 11112222345888889999988888642 3556777888888888999989
Q ss_pred HHHHccCCCCCee------cH-----------------HHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHH
Q 007077 143 KKLFDEMPDKDVV------SW-----------------NVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSA 199 (619)
Q Consensus 143 ~~~~~~~~~~~~~------~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 199 (619)
...++++...... .| ...+..+-.....+.|...+..... ....|+... ......
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~-~~~dp~~~~-~~~G~~ 278 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK-QLADPAFRA-RAQGLA 278 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH-hccCcchHH-HHHHHH
Confidence 8888876431110 11 1111111111122334444443322 111222111 122334
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCc---hhHH------------HHH
Q 007077 200 CTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNV---ICWT------------SMV 262 (619)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li 262 (619)
+...|+++.|...++.+.+..|.+..++..+..+|.+.|++++|+..|++..+ |+. ..|. ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 56678888888888888777777777888888888888888888888877654 221 1121 123
Q ss_pred HHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH-------
Q 007077 263 SGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD-KFILVALLTGC------- 331 (619)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~------- 331 (619)
..+.+.|++++|...|++.. +.+...+..+...+...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHH
Confidence 45667788888888887654 335566777777888888888888888887764 233 22333333333
Q ss_pred -----------------------------------HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 332 -----------------------------------AQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 332 -----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
...|++++|.+.+++..+.. +.+..++..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33445555555555544432 223344444555555555555555
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCcHHHHHHH
Q 007077 377 EIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI---------TFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 377 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~g~~~~a~~~ 444 (619)
..|+++.+ .+...+..+...+...++.++|+..++++......++.. .+......+...|+.++|..+
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 55554432 123333333333444555555555554433221111110 112233445566666777666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
++. .+++...+..+...+.+.|++++|++.|+++... .+.+...+..++..+...|++++|++.++++.+..|
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 551 2345566777888888889999999888887732 444556688888888888999999999988888888
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 525 KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 525 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+++.++..++.++...|++++|.++++++...
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888888899999999988888754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-21 Score=209.08 Aligned_cols=513 Identities=11% Similarity=-0.003 Sum_probs=354.9
Q ss_pred HHHHHHHHhccCCCCChhHHHHhhccC---CCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 007077 22 TLNKLMVFCTHPSHGNLLYAEKIFGSI---QSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAV 98 (619)
Q Consensus 22 ~~~~l~~~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (619)
++..+..++.....|++++|...|++. .|.+..++..|...|.+.|++++|+..+++..+. .|+...|..++..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh
Confidence 444455555433569999999999865 3556778899999999999999999999999886 45555555544333
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhhHHHHHHH--------hHhcCChhHHHHHHccCCCCC--eecHHHH-HHHHHcC
Q 007077 99 GWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDM--------YGVLGKICNVKKLFDEMPDKD--VVSWNVS-ISGHVKC 167 (619)
Q Consensus 99 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~ 167 (619)
++.++|..+++++.+... -+..++..+... |.+.++..++++ .....|+ ....... ...|.+.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred ---ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 889999999999998653 234455555554 777766666766 3333343 4444444 8899999
Q ss_pred CChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHH
Q 007077 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA-LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEAREL 246 (619)
Q Consensus 168 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 246 (619)
|++++|++++..+.+ .+ +.+......+-.++.. .++ +.+..++. +....++.+...+++.|.+.|+.++|.++
T Consensus 196 ~dw~~Ai~lL~~L~k-~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~---~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 196 KQWSQADTLYNEARQ-QN-TLSAAERRQWFDVLLAGQLD-DRLLALQS---QGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred hCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhc---hhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987 33 3334445556566666 355 66666644 23457888999999999999999999999
Q ss_pred hccCCC-----CCchhHHHH------------------------------HHHHH-------------------------
Q 007077 247 FDEMPN-----KNVICWTSM------------------------------VSGYV------------------------- 266 (619)
Q Consensus 247 ~~~~~~-----~~~~~~~~l------------------------------i~~~~------------------------- 266 (619)
++++.. |+..+|--+ +..+.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 998864 222222111 22222
Q ss_pred --------------------------------------hcCCHHHHHHHHccCCC--C----ChhhHHHHHHHHHHcCC-
Q 007077 267 --------------------------------------NCGQLEKARDLFDRSPV--R----DIVLWTAMINGYVQFNR- 301 (619)
Q Consensus 267 --------------------------------------~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~- 301 (619)
+.|+.++|..+|+.... + +....+-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 33444445444443322 1 11122234444444433
Q ss_pred --hhHHHHH----------------------HHHHHH-cCC-CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC
Q 007077 302 --FDEAVAL----------------------FREMQI-IRL-KP--DKFILVALLTGCAQLGALEQGKWIHGYINENRIT 353 (619)
Q Consensus 302 --~~~A~~~----------------------~~~m~~-~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 353 (619)
..++..+ +..... .+. ++ +...+..+..++.. ++.++|...+.......
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 2222222 111100 011 12 33444555544444 67777777666666543
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLS 430 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 430 (619)
|+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|...+++.++. .|+.. .+..+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 4444333445555689999999999987653 34556777788888999999999999999877 45443 3334444
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.....|++++|...+++..+. .|+...+..+..++.+.|++++|++.+++... -++.+...++.+..++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~-l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALE-LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHH
Confidence 555679999999999998854 57888899999999999999999999998883 34555567888998999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+|+..++++.++.|+++.++..++.+|...|++++|...+++..+..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999987643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-21 Score=207.17 Aligned_cols=539 Identities=10% Similarity=-0.024 Sum_probs=381.0
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHhH
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ--SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLR 80 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 80 (619)
++...+.+.++..+.. +.++..|...|. +.|+.++|+..+++.. .|+-..|..++..+ +++.+|..+++++.
T Consensus 62 ~A~~~l~~Al~~dP~n-~~~~~~LA~~yl--~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~ 135 (987)
T PRK09782 62 TAIREFEYIHQQVPDN-IPLTLYLAEAYR--HFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELL 135 (987)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHH
Confidence 4556667777666444 788889999998 9999999999988654 23333333333222 77777888888776
Q ss_pred HCCC------------------------------------CCC--cccHHHH-HHHHhccCChhHHHHHHHHHHHhCCCC
Q 007077 81 ERGV------------------------------------SPD--NFTYPFV-FKAVGWLGEVKKGEKVHGYVVKTGLEF 121 (619)
Q Consensus 81 ~~~~------------------------------------~p~--~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~ 121 (619)
+... +|+ ....... ...|.+.++++.|..++..+.+.+. .
T Consensus 136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l 214 (987)
T PRK09782 136 AQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-L 214 (987)
T ss_pred HhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-C
Confidence 6521 111 1112222 4556667777778888888777654 2
Q ss_pred ChhhHHHHHHHhHh-cCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHH-
Q 007077 122 DTYVCNSIMDMYGV-LGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSA- 199 (619)
Q Consensus 122 ~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~- 199 (619)
+......|..+|.. .++ +.+..+++...+.++..+..+...+.+.|+.++|...++++.....-.|+..++.-.+.-
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~ 293 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY 293 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc
Confidence 34445556566666 366 777777665445577788899999999999999999999986622223444444333321
Q ss_pred -----------------------------hhcCCChHHHHHH-----------------------------HHHHHHhcc
Q 007077 200 -----------------------------CTALKNLELGKEI-----------------------------HRYINQELE 221 (619)
Q Consensus 200 -----------------------------~~~~~~~~~a~~~-----------------------------~~~~~~~~~ 221 (619)
+...+.++.+.++ +..+.+..|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 294 SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 2222333322222 222222223
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHhccCCC--C----CchhHHHHHHHHHhcCC---HHHHHHH---------------
Q 007077 222 FTPIMGNALLDMYCKCGCLSEARELFDEMPN--K----NVICWTSMVSGYVNCGQ---LEKARDL--------------- 277 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~---~~~A~~~--------------- 277 (619)
.+....--+.-...+.|+.++|.++|+.... + +...-+.++..|.+.+. ..++..+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 3444444444556678999999999988765 2 22234467777776655 2233222
Q ss_pred ----------HccCC---CC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 007077 278 ----------FDRSP---VR--DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKW 342 (619)
Q Consensus 278 ----------~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 342 (619)
+.... ++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 11221 23 56778888888877 8999999988887764 4776655555566678999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHCCCC
Q 007077 343 IHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSI---ICGLAMNGKINKALELFSQMISGGAK 419 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~g~~ 419 (619)
.++.+... +|+...+..+..++.+.|+.++|...|++..+.++...+.. ...+...|++++|...+++.++. .
T Consensus 531 ~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 531 AWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 99987654 44455566778889999999999999998876554444333 33344559999999999999987 7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 420 PDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 420 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
|+...+..+..++.+.|+.++|...++..... -+.+...++.+...+...|++++|++.+++... ..|.+...+..+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-l~P~~~~a~~nL 683 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK-GLPDDPALIRQL 683 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHH
Confidence 78788999999999999999999999999864 234477888899999999999999999998873 244555679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
..++...|++++|+..++++.++.|++..+....+++..+..+++.|.+-+++.....+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999988887654443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=196.78 Aligned_cols=450 Identities=14% Similarity=0.114 Sum_probs=322.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHh
Q 007077 56 YNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGV 135 (619)
Q Consensus 56 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 135 (619)
...|..-..+.|++++|.+.-...-+.+ +.+......+-..+.+..+.+...+--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3455555666777777766555443332 2222333333334444444544443333333211 1233456666666666
Q ss_pred cCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 007077 136 LGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEI 212 (619)
Q Consensus 136 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 212 (619)
.|++++|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|....+ +.|+...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~c-------------------- 185 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYC-------------------- 185 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhh--------------------
Confidence 6666666666665553 2 334566666666666666666666665533 3344332
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHccCCCCC---h
Q 007077 213 HRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KN-VICWTSMVSGYVNCGQLEKARDLFDRSPVRD---I 286 (619)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 286 (619)
+.+.+.......|++++|...|-+..+ |. .+.|+.|.-.+-..|++..|+..|++...-| .
T Consensus 186 -------------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 186 -------------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred -------------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 233344444455666666665555443 22 2356666666667777777777776655433 3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK-FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
..|-.|...|...+.+++|+..|.+... ..|+. ..+..+...|...|.++.|+..+++.++.. +.-+..|+.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHH
Confidence 5788888999999999999999988766 45654 477778888889999999999999998875 4457789999999
Q ss_pred HHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHH
Q 007077 366 YAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 441 (619)
+...|++.+|...|++... ....+.+.|...|...|.+++|..+|....+- .|.. ..++.+...|-++|++++|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHH
Confidence 9999999999999998764 35778999999999999999999999998876 7774 5889999999999999999
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 442 RRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+++.. .+.|+ ...|+.+...|-..|+...|++.+.+... -.+.....++.|...|...|++.+|+..|+.+.
T Consensus 408 i~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 408 IMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh-cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999988 66888 67899999999999999999999999883 356667779999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 521 KIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 521 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+++|+.+.+|-.++.++.--.+|.+--+-+++
T Consensus 484 klkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 484 KLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred ccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 99999999999998887776666663333333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-22 Score=186.89 Aligned_cols=421 Identities=13% Similarity=0.095 Sum_probs=335.2
Q ss_pred HHHHHHhHhcCChhHHHHHHccCCCCCee---cHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcC
Q 007077 127 NSIMDMYGVLGKICNVKKLFDEMPDKDVV---SWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTAL 203 (619)
Q Consensus 127 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 203 (619)
..|.+-..+.|++.+|++--...-..|.. ..-.+-..+.+..+.+.....-....+ ..+.-..+|..+...+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh--ccchHHHHHHHHHHHHHHh
Confidence 34455555677777777755544332211 111222344444455544433222222 2233445777788888888
Q ss_pred CChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCchh-HHHHHHHHHhcCCHHHHHHHHcc
Q 007077 204 KNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNVIC-WTSMVSGYVNCGQLEKARDLFDR 280 (619)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~ 280 (619)
|+++.|...++.+++.-|.....|..+..++...|+.+.|.+.|.+..+ |+... .+.+...+-..|++++|...+-+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 8888888888888888777888889999999999999999999988876 44443 33445556678999999888876
Q ss_pred CCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh
Q 007077 281 SPV--R-DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLGALEQGKWIHGYINENRITVDA 356 (619)
Q Consensus 281 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 356 (619)
... | =.+.|+.|...+...|+...|+..|++..+ +.|+.. .|..|...+...+.++.|...+.+..... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 543 3 346899999999999999999999999987 566643 78889999999999999999998887764 4566
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSAC 432 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 432 (619)
.++..+...|..+|.++-|+..|++..+. -+..|+.|..++-..|+..+|...|.+.+.. .|+ ..+.+.+...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 77888888899999999999999998753 4679999999999999999999999999987 666 56899999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
...|.+++|..+|....+ +.|. ....+.|...|..+|++++|+..+++.. +-.+.....|+.+...|...|+.+.
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-rI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-RIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-hcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999998874 4566 5678999999999999999999999987 3355556679999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
|.+.+.+++.+.|.-..++..|+.+|..+|+..+|+.-++...+...
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999876443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-19 Score=191.67 Aligned_cols=253 Identities=15% Similarity=0.064 Sum_probs=208.1
Q ss_pred cCChhHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 299 FNRFDEAVALFREMQIIR-LKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..++.. +.....+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999998765 3343 4467777788889999999999999998864 445668888999999999999999
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 007077 377 EIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY 452 (619)
Q Consensus 377 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 452 (619)
..|+++.+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+...+.+.|++++|...|+.....
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99998764 36788999999999999999999999999987 565 457777888899999999999999998864
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CC-ccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 453 QIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NN-EII----VPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.+.+...++.+..++...|++++|++.|++.... +. .+. ...++..+..+...|++++|+..++++.+++|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3445788999999999999999999999986622 21 111 0112222233445799999999999999999999
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..++..++.++...|++++|.+.+++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=178.36 Aligned_cols=271 Identities=14% Similarity=0.105 Sum_probs=196.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD---KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA 361 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (619)
+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 344566666666666666666666666655432221 1345556666666677777777776666542 345566667
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCC--------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREKD--------AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSAC 432 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 432 (619)
++..+.+.|++++|.+.++.+.+.+ ...+..++..+...|++++|...|+++.+. .|+ ..++..+...+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHH
Confidence 7777777777777777777665321 113456777788899999999999998876 444 45777788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+.|++++|.++++++... .|+ ...+..++.+|.+.|++++|.+.++++.... |+...+..++..+.+.|+++
T Consensus 225 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHH
Confidence 9999999999999998764 343 4567888999999999999999999877321 22334688889999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHh---CCChHHHHHHHHHHHhCCCcccCce
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYAS---ANRWEDVTNVRQKMKEMGVRKVPGC 564 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 564 (619)
+|...++++.+..|++.. +..+...+.. .|+.+++..++++|.+.++++.|..
T Consensus 300 ~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 300 AAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 999999999999999886 5555555443 5699999999999999888888753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-18 Score=178.07 Aligned_cols=356 Identities=8% Similarity=-0.025 Sum_probs=214.1
Q ss_pred hcCChhHHHHHHccCCC------CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH
Q 007077 135 VLGKICNVKKLFDEMPD------KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL 208 (619)
Q Consensus 135 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 208 (619)
+..+++.-.-+|...++ .+..-...++..+.+.|++++|..+++.... ..+-+...+..++.++...|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHH
Confidence 44555555555555543 1233455567777788888888888888765 122223344444455566778888
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhh
Q 007077 209 GKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVL 288 (619)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 288 (619)
|...++.+....|.++..+..+...+.+.|++++|...|++... ..+.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~----------------------------l~P~~~~a 146 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL----------------------------AFSGNSQI 146 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------hCCCcHHH
Confidence 88888877777777777777777777777777777777766543 11223445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
+..++..+...|++++|...++.+......+.. .+..+ ..+...|++++|...++.+.+....++......+...+..
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555556666666666666555443222111 11111 2345556666666666555544322233333344555666
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 007077 369 CGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINK----ALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDE 440 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 440 (619)
.|++++|...|+++.. .+...+..+...+...|++++ |...|++..+. .|+ ..++..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 6666666666666543 245556666667777777664 67777777765 454 3466667777777777777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
|...++..... -+.+...+..+..+|.+.|++++|++.++++... .+.....+..+..++...|++++|...++++.
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777653 1223455666777777777777777777776622 11121223334556777777888888777777
Q ss_pred ccCCCCc
Q 007077 521 KIESKDS 527 (619)
Q Consensus 521 ~~~p~~~ 527 (619)
+..|++.
T Consensus 380 ~~~P~~~ 386 (656)
T PRK15174 380 QARASHL 386 (656)
T ss_pred HhChhhc
Confidence 7777654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-17 Score=176.11 Aligned_cols=420 Identities=10% Similarity=-0.038 Sum_probs=281.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcC
Q 007077 91 YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKC 167 (619)
Q Consensus 91 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 167 (619)
+......+.+.|+++.|...|+..++ ..|+...|..+..+|.+.|++++|++.++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 33445566677777888887777766 345666777777777777888877777776654 2 334667777777788
Q ss_pred CChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHh
Q 007077 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELF 247 (619)
Q Consensus 168 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (619)
|++++|+..|.......+..+ .....++..... ..+........+..+.+...+..+.. |......+.+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~--~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRN--EQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 888888777766544111111 111111111110 11222222222222333222222222 22221222222212
Q ss_pred ccCCCCCc---hhHHHHHHH---HHhcCCHHHHHHHHccCCC------CChhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 007077 248 DEMPNKNV---ICWTSMVSG---YVNCGQLEKARDLFDRSPV------RDIVLWTAMINGYVQFNRFDEAVALFREMQII 315 (619)
Q Consensus 248 ~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 315 (619)
....+-+. ..+..+... ....+++++|.+.|+.... .+...|+.+...+...|++++|+..|++....
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 21111111 111111111 1234678888888876542 24567888888999999999999999998874
Q ss_pred CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHH
Q 007077 316 RLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWT 391 (619)
Q Consensus 316 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 391 (619)
.|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+. +...+.
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~ 437 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI 437 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence 455 4477888888899999999999999998874 566788999999999999999999999988643 566788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-h-------HHH
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-E-------HYG 462 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~ 462 (619)
.+...+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|...|+..... .|+. . .++
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHH
Confidence 8889999999999999999999876 555 568888889999999999999999998753 3321 1 122
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.....+...|++++|.+++++.... ++.+...+..+...+...|++++|.+.|+++.++.+....
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l-~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALII-DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 2223344579999999999987632 3445556889999999999999999999999988876444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-17 Score=165.25 Aligned_cols=522 Identities=11% Similarity=0.036 Sum_probs=375.3
Q ss_pred HHHHHhccCCCCChhHHHHhhccC----C--CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 007077 25 KLMVFCTHPSHGNLLYAEKIFGSI----Q--SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAV 98 (619)
Q Consensus 25 ~l~~~~~~~~~g~~~~a~~~~~~~----~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 98 (619)
.|-.++.....|++..|+.+|... | +||+.. .+-.++.+.|+.+.|+..|.+..+.+. -++.++..|...-
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHH
Confidence 334444333578888888888763 1 344432 233566688888888888888887532 1222232222222
Q ss_pred hcc---CChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCC------eecHHHHHHHHHcCCC
Q 007077 99 GWL---GEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKD------VVSWNVSISGHVKCMR 169 (619)
Q Consensus 99 ~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~ 169 (619)
... ..+..+..++....... ..++.+.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|+
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd 322 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD 322 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence 222 23445555555555433 2567788889999999999999999888776432 2357778899999999
Q ss_pred hhHHHHHHHHhHhcCCCCCChh--hHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcC----ChhhH
Q 007077 170 FEDAVDVFRRMRQGCNLMPDEG--TVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCG----CLSEA 243 (619)
Q Consensus 170 ~~~A~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A 243 (619)
+++|...|..-.+ ..||.+ .+..+...+...|+++.+...|+.+.+..|.+..+...|...|...+ ..+.|
T Consensus 323 ~ekA~~yY~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 323 FEKAFKYYMESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHHHHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 9999999988754 455554 34456777899999999999999999999999999999999998875 56778
Q ss_pred HHHhccCCCC---CchhHHHHHHHHHhcCCH------HHHHHHHc-cCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 244 RELFDEMPNK---NVICWTSMVSGYVNCGQL------EKARDLFD-RSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 244 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~------~~A~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
..++.+..++ |...|-.+...+....-+ ..|..++. .+....+...|.+...+...|++.+|...|....
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 8888777763 555666666666544433 33443332 2334567889999999999999999999999886
Q ss_pred Hc---CCCCCH------HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 007077 314 II---RLKPDK------FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE 384 (619)
Q Consensus 314 ~~---g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 384 (619)
.. ...+|. .+--.+....-..++.+.|.+.|..+.+.. |.-+..|-.+..+....+...+|...++....
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 54 223333 223345556677889999999999998863 33334444444444455778889999988764
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHh
Q 007077 385 ---KDAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSH------------GGLVDEGRRFFNTM 448 (619)
Q Consensus 385 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~ 448 (619)
.++..|..+...+.....+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 478888888889999999999999888776542 23677777777775542 34577888898888
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCC
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE--SKD 526 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~ 526 (619)
.+ .-+.|...-|-+.-+++..|++.+|..+|.++..... ....+|-.+..+|...|++..|+++|+...+.. .++
T Consensus 639 L~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 639 LR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred Hh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 76 3456677788899999999999999999998874322 112239999999999999999999999986543 457
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+.+..+|+.++.+.|++.+|.+.+.......
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 7888999999999999999999998877543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-17 Score=177.34 Aligned_cols=410 Identities=10% Similarity=-0.023 Sum_probs=206.1
Q ss_pred CcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHH
Q 007077 87 DNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISG 163 (619)
Q Consensus 87 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 163 (619)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..++++..+ .+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33334444555566777777777777766522 23344566677777777777777777776432 234456666667
Q ss_pred HHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhH
Q 007077 164 HVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEA 243 (619)
Q Consensus 164 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (619)
+...|++++|+..+++..+ . .+.+.. +..+..++...|+.+.|...++.+.+..|.+...+..+..++.+.|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~-~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVS-G-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHH-h-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7777777777777777655 1 222333 555555666667777777777777776666666666666666666666666
Q ss_pred HHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHH-----HHcCCh---hHHHHHHHHHHHc
Q 007077 244 RELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGY-----VQFNRF---DEAVALFREMQII 315 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~ 315 (619)
++.++.... +.. +..-+ . ......++... ...+++ ++|++.++.+.+.
T Consensus 170 l~~l~~~~~-~p~-~~~~l-------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 170 LGAIDDANL-TPA-EKRDL-------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHHHHhCCC-CHH-HHHHH-------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 666665543 110 00000 0 00001111111 111223 5666666666643
Q ss_pred -CCCCCHH-HHH----HHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC--
Q 007077 316 -RLKPDKF-ILV----ALLTGCAQLGALEQGKWIHGYINENRIT-VDAVVATALIEMYAKCGLIEKALEIFYELREKD-- 386 (619)
Q Consensus 316 -g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 386 (619)
...|+.. .+. ..+..+...|+.++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1222221 111 1122334556666666666666655421 11 111223455666666666666666554321
Q ss_pred -----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 387 -----AASWTSIICGLAMNGKINKALELFSQMISGGA-----------KPDD---ITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 387 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
......+..++...|++++|.+.++++..... .|+. ..+..+...+...|+.++|++.+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12234444555666666666666666655410 1111 1222333444444555555555555
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
+... .+.+...+..++..+...|++++|++.+++.... .|.+...+...+..+...|++++|+.+++.+.+..|+++
T Consensus 385 al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l-~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 385 LAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL-EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 4432 2223444444455555555555555555544421 122222333444444445555555555555555555554
Q ss_pred c
Q 007077 528 S 528 (619)
Q Consensus 528 ~ 528 (619)
.
T Consensus 462 ~ 462 (765)
T PRK10049 462 G 462 (765)
T ss_pred H
Confidence 3
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-18 Score=180.00 Aligned_cols=394 Identities=8% Similarity=0.011 Sum_probs=249.0
Q ss_pred HHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc
Q 007077 126 CNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA 202 (619)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 202 (619)
..-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++..+ --+.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS--LEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 33444445555666666665555442 1222355555555566666666666655543 112223333344444455
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSP 282 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (619)
.|+.++|...++.+.+..|.+.. +..+..++...|+.++|...++++.+ ..
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----------------------------~~ 146 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----------------------------RA 146 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------hC
Confidence 55555555555555555444444 55555555555555555555544433 11
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHH-----HccCcH---HHHHHHHHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK------FILVALLTGC-----AQLGAL---EQGKWIHGYIN 348 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~ 348 (619)
+.+...+..+...+...+..++|+..++.... .|+. .....++... ...+++ +.|...++.+.
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 22344445555556666666666666654432 2221 0011111111 112233 67777888877
Q ss_pred Hc-CCCCChh-HH-HH---HHHHHHhCCCHHHHHHHHHhcCCCC---hh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007077 349 EN-RITVDAV-VA-TA---LIEMYAKCGLIEKALEIFYELREKD---AA-SWTSIICGLAMNGKINKALELFSQMISGGA 418 (619)
Q Consensus 349 ~~-~~~~~~~-~~-~~---l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 418 (619)
+. ...|+.. .+ .. .+.++...|++++|+..|+++.+.+ +. .-..+...|...|++++|+..|+++.+.
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~-- 301 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH-- 301 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--
Confidence 54 2222221 11 11 1234567799999999999988643 11 1223577899999999999999998875
Q ss_pred CCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHH
Q 007077 419 KPD-----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQ----------IQPK---LEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 419 ~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
.|. ......+..++...|++++|.++++.+..... -.|+ ...+..++..+...|++++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 332 23456666788999999999999999886411 1122 23456678889999999999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++++.. ..|.+...+..++..+...|++++|++.++++.+++|+++.++..++..+...|++++|..+++++.+.
T Consensus 382 l~~al~-~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAY-NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999873 244456679999999999999999999999999999999999999999999999999999999999764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=173.36 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCC--------hhhHHHHHHH
Q 007077 227 GNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRD--------IVLWTAMING 295 (619)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~ 295 (619)
+..++..|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+ ...+..++..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34455555555555555555555443 122233333333333444444433333322110 0122334444
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA 375 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 375 (619)
+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.++.+|.+.|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 445555555555555544422 1122233444444444555555555554444432111123344444445555555555
Q ss_pred HHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHH
Q 007077 376 LEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH---GGLVDEGRRFFNTMTE 450 (619)
Q Consensus 376 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 450 (619)
...++++.+ |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+
T Consensus 269 ~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 269 LEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 554444432 23333344444455555555555555544443 4444444444443332 2344445555544444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-17 Score=161.78 Aligned_cols=509 Identities=12% Similarity=0.034 Sum_probs=340.6
Q ss_pred hhHHHHhhccCC---CCCcccHHHHHHHHH--hcCChhHHHHHHHHhHHCC--CCCCcccHHHHHHHHhccCChhHHHHH
Q 007077 38 LLYAEKIFGSIQ---SPCLLAYNLLIKAFA--KKGSFRKSLLLFSKLRERG--VSPDNFTYPFVFKAVGWLGEVKKGEKV 110 (619)
Q Consensus 38 ~~~a~~~~~~~~---~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 110 (619)
++.|...|.... ++|+-. .+..++. ..|++..|+.+|....... .+||. ...+-.++.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHH
Confidence 467777776553 233332 3334433 5678899999998866542 33443 22333455688888889888
Q ss_pred HHHHHHhCCCCCh-hhHHHHHHHhHh---cCChhHHHHHHccCC---CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhc
Q 007077 111 HGYVVKTGLEFDT-YVCNSIMDMYGV---LGKICNVKKLFDEMP---DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG 183 (619)
Q Consensus 111 ~~~~~~~g~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 183 (619)
|.+..+.. |+. .++-.|...-.. ...+..+..++...- ..|++..+.|...|.-.|++..++.+...+...
T Consensus 222 ~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 88888733 322 222222111111 223445555555443 257788888888888899999999988888661
Q ss_pred CCCC-CChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCC-hhHHHHHHHHHHhcCChhhHHHHhccCCC--C-CchhH
Q 007077 184 CNLM-PDEGTVVSTLSACTALKNLELGKEIHRYINQELEFT-PIMGNALLDMYCKCGCLSEARELFDEMPN--K-NVICW 258 (619)
Q Consensus 184 ~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 258 (619)
.... .-...|-.+.+++-..|+++.|...+-...+..+.+ ...+-.+..+|.+.|+++.+...|+.+.+ | +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 1111 112346667788888899999998888877774444 55567788889999999999988888875 3 44456
Q ss_pred HHHHHHHHhcC----CHHHHHHHHccCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHH----HHcCCCCCHHHHHHH
Q 007077 259 TSMVSGYVNCG----QLEKARDLFDRSPVR---DIVLWTAMINGYVQFNRFDEAVALFREM----QIIRLKPDKFILVAL 327 (619)
Q Consensus 259 ~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~l 327 (619)
..+...|...+ ..+.|..++.+...+ |...|-.+...+-... ...++..|... ...+-.+.....+.+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 66666666554 566777777665533 5666666666555444 44447666654 344555677788888
Q ss_pred HHHHHccCcHHHHHHHHHHHHHc---CCCCCh------hHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hhHHHHHH
Q 007077 328 LTGCAQLGALEQGKWIHGYINEN---RITVDA------VVATALIEMYAKCGLIEKALEIFYELREKDA---ASWTSIIC 395 (619)
Q Consensus 328 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~ 395 (619)
.......|+++.|...|...... ...++. .+--.+..++-..++.+.|.+.|..+.+..+ ..|--++.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 88888899999998888877654 112222 2333466677777888899999988876433 33444443
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH------
Q 007077 396 GLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG------ 469 (619)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~------ 469 (619)
.....+...+|...+....... ..+...+..+...+.....+..|..-|+...+.....+|..+.-+|...|.
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3334577888888888877642 333344444555677777777787766666655344466666666666554
Q ss_pred ------hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 470 ------RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 470 ------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
..+..++|+++|.++. ..+|-+...-|.+.-.++..|++.+|..+|.++.+-..+.+.+|..++++|..+|+|
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL-~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVL-RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHH-hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 2356788999998887 346666655677777788999999999999999888888888899999999999999
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
-.|+++|+...+
T Consensus 697 ~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 697 RLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-17 Score=171.92 Aligned_cols=356 Identities=10% Similarity=0.014 Sum_probs=265.4
Q ss_pred HcCCChhHHHHHHHHhHhcC-CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhH
Q 007077 165 VKCMRFEDAVDVFRRMRQGC-NLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEA 243 (619)
Q Consensus 165 ~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 243 (619)
.+..+|+.-.-+|..-.+.. .-.-+......++..+.+.|+.+.|..+++.+....|.+......++......|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 34455555544444432200 01112223444555566667777777777766666666666666666666666666666
Q ss_pred HHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HH
Q 007077 244 RELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD-KF 322 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 322 (619)
...|+++.+ ..+.+...+..+...+...|++++|+..|+++... .|+ ..
T Consensus 96 ~~~l~~~l~----------------------------~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~ 145 (656)
T PRK15174 96 LQVVNKLLA----------------------------VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQ 145 (656)
T ss_pred HHHHHHHHH----------------------------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH
Confidence 665555432 12335667888889999999999999999999874 454 55
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC----ChhhHHHHHHHHH
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK----DAASWTSIICGLA 398 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~ 398 (619)
.+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+. +...+..+...+.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 77888899999999999999999887664 2333444333 3478899999999999987653 2334455677889
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 399 MNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDE----GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
..|++++|+..++++.+. .|+ ...+..+...+...|++++ |...|+..... .+.+...+..+...+.+.|+
T Consensus 224 ~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 224 AVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999987 455 5577788889999999986 89999998863 23447789999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+++|+..+++.... .+.+...+..+..++...|++++|+..++++.+..|+++..+..++.++...|++++|...+++.
T Consensus 300 ~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 300 NEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988732 44455568888999999999999999999999999998877777889999999999999999998
Q ss_pred HhCC
Q 007077 554 KEMG 557 (619)
Q Consensus 554 ~~~~ 557 (619)
.+..
T Consensus 379 l~~~ 382 (656)
T PRK15174 379 IQAR 382 (656)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-15 Score=160.02 Aligned_cols=425 Identities=11% Similarity=0.003 Sum_probs=224.6
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHH-H--HHHHHcCCChhHH
Q 007077 97 AVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNV-S--ISGHVKCMRFEDA 173 (619)
Q Consensus 97 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A 173 (619)
...+.|++..|...++++.+........++ .++..+...|+.++|+..+++...|+...+.. + ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345778888888888888774422112233 67777777788888888888877664443333 3 3456667888888
Q ss_pred HHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC-
Q 007077 174 VDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN- 252 (619)
Q Consensus 174 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 252 (619)
+++|+.+.+ ..+-++..+..++..+...++.++|...++.+.+..+. ...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~--~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLK--KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHh--hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 888888865 12223344455556667777777777777777665443 22234444444445555557777777765
Q ss_pred -C-CchhHHHHHHHHHhcCCHHHHHHHHccCCCC-ChhhHHH----HHHHHHHc---------CC---hhHHHHHHHHHH
Q 007077 253 -K-NVICWTSMVSGYVNCGQLEKARDLFDRSPVR-DIVLWTA----MINGYVQF---------NR---FDEAVALFREMQ 313 (619)
Q Consensus 253 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----li~~~~~~---------g~---~~~A~~~~~~m~ 313 (619)
| +...+..+...+.+.|-...|.++...-+.- +...+.- .+.-..+. .+ .+.|+.-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 3445566667777777777777766654411 1111100 01111111 11 122333333333
Q ss_pred Hc-CCCCCH-HH----HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--
Q 007077 314 II-RLKPDK-FI----LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-- 385 (619)
Q Consensus 314 ~~-g~~p~~-~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 385 (619)
.. +-.|.. .. ..--+-++...++..+++..++.+...+.+....+-.++.++|...+++++|+.+|.++...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 21 111211 11 11223344555666666666666665554444445555666666666666666666655321
Q ss_pred -------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CC--CHH-HHHHHHHHHhccCcHHHHHHH
Q 007077 386 -------DAASWTSIICGLAMNGKINKALELFSQMISGGA-----------KP--DDI-TFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 386 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-~~~~ll~~~~~~g~~~~a~~~ 444 (619)
+......|..+|...+++++|..+++++.+.-. .| |-. .+..++..+...|+..+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111234455556666666666666666655210 11 111 222333444555556666666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
++.+.. .-+-|......+.+.+...|.+.+|++.++..... ++.+..+....+.+....|++.+|..+.+.+.+..|
T Consensus 439 le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 555543 22334555555555555556666666555444321 333333344455555555556666555555555555
Q ss_pred CCcc
Q 007077 525 KDSS 528 (619)
Q Consensus 525 ~~~~ 528 (619)
+++.
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 5554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-15 Score=157.18 Aligned_cols=420 Identities=11% Similarity=0.032 Sum_probs=295.1
Q ss_pred HHHhcCChhHHHHHHHHhHHCCCCCCcc-cHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChh
Q 007077 62 AFAKKGSFRKSLLLFSKLRERGVSPDNF-TYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKIC 140 (619)
Q Consensus 62 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 140 (619)
...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...+++... .-.........+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 456788888888888888765 34431 222666777777888888888887772 11111222233345677778888
Q ss_pred HHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 007077 141 NVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYIN 217 (619)
Q Consensus 141 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 217 (619)
+|.++|+++.+ | ++..+..++..+...++.++|++.++++.. ..|+...+..++..+...++...|...++.+.
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888764 2 344566667777888888888888888744 45565555444444444555555888888888
Q ss_pred HhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC-CchhHHHH----HHHHH---------hcC---CHHHHHHHHcc
Q 007077 218 QELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK-NVICWTSM----VSGYV---------NCG---QLEKARDLFDR 280 (619)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l----i~~~~---------~~g---~~~~A~~~~~~ 280 (619)
+..|.+...+..+.....+.|-...|.++..+-+.- +...+..+ +.-.. ... -.+.|+.-++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 888888888888888888888888888877765530 11111000 00011 111 12334444443
Q ss_pred CCC-----CCh-----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 281 SPV-----RDI-----VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 281 ~~~-----~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
+.. |.. .+.--.+-++...|++.++++.|+.|...|.+....+-..+.++|...+++++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 321 211 1222355678889999999999999999887756678889999999999999999999999765
Q ss_pred C-----CCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh------------------hhHHHHHHHHHhCCChHHHH
Q 007077 351 R-----ITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA------------------ASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 351 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~A~ 407 (619)
. .+++......|.-+|...+++++|..+++++.+..+ ..+..++..+...|+..+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 233444467899999999999999999999875211 23445678889999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 408 ELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 408 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+.++++... .|. ..........+...|.+.+|.+.++.... ..|+ ..+....+..+...|++.+|..+.+.+.
T Consensus 437 ~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 437 KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999877 554 56788888999999999999999977664 3455 6677788889999999999999998776
Q ss_pred C-CCCccc
Q 007077 486 N-ENNEII 492 (619)
Q Consensus 486 ~-~~~~~~ 492 (619)
. .|+.+.
T Consensus 512 ~~~Pe~~~ 519 (822)
T PRK14574 512 SRSPEDIP 519 (822)
T ss_pred hhCCCchh
Confidence 2 344444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-14 Score=129.60 Aligned_cols=414 Identities=10% Similarity=0.072 Sum_probs=223.8
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHH-HHhhccC-----------------------CCCCcccHHHH
Q 007077 4 LKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYA-EKIFGSI-----------------------QSPCLLAYNLL 59 (619)
Q Consensus 4 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a-~~~~~~~-----------------------~~~~~~~~~~l 59 (619)
+.-+|..|-+-|.+.++.+--.|+...++-...++..| ++.|-.| .+++..+|..|
T Consensus 134 s~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~m 213 (625)
T KOG4422|consen 134 SCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIM 213 (625)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHHH
Confidence 44577888888888887776666654432122222222 2223222 34556677777
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
|.++++--..++|.++|++......+.+..+||.+|.+..- ....++..+|....+.||..|+|+++.+.++.|++
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 77777777777777777777766666777777777766432 23366777777777777777777777777777776
Q ss_pred hHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH-HHHHHHHHHH
Q 007077 140 CNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL-GKEIHRYINQ 218 (619)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~ 218 (619)
+.|.+ .|++++.+|++ .|+.|.-.+|..+|..+.+-++..+ +..+...+..
T Consensus 290 ~~ar~---------------------------aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 290 EDARK---------------------------AALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHH---------------------------HHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 66543 35667777877 7888888888888877776666544 3333333332
Q ss_pred h---------ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCC--CChh
Q 007077 219 E---------LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPV--RDIV 287 (619)
Q Consensus 219 ~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 287 (619)
. .|.+...+..-++.+.+..+.+-|.++-.-....+.. ..+.. ....
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~----------------------~~ig~~~~~~f 399 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW----------------------KFIGPDQHRNF 399 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch----------------------hhcChHHHHHH
Confidence 1 2234445556666666666766666654433221100 00000 0112
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYA 367 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (619)
-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+++..+...|..........++..++
T Consensus 400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 34445555666666666666676666655666666666667766666666666666666666553333332222222222
Q ss_pred hCCCHHHHHHHHHhcCCCChhhHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 368 KCGLIEKALEIFYELREKDAASWTSIICGLA--MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
+..- .++...-..+-...+ ...-.+.....-.+|.+..+. ....+.++..+.+.|..++|.+++
T Consensus 480 ~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 480 RDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred cCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHH
Confidence 2210 111111011111100 001111112222334433222 233444444555666666666666
Q ss_pred HHhHHhcCCCCChhHHH---HHHHHHHhcCCHHHHHHHHhhCC
Q 007077 446 NTMTEVYQIQPKLEHYG---CLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
..+.+.+.-.|-....+ -+++.-.+..+.-.|...++-|.
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 66644433333333333 33444455566666666666664
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-12 Score=126.09 Aligned_cols=455 Identities=11% Similarity=0.082 Sum_probs=309.5
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--------CCeecHHHHHHHHHcCCC
Q 007077 98 VGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--------KDVVSWNVSISGHVKCMR 169 (619)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~ 169 (619)
+++...++.|..++....+ .++-+..+|-+-...--..|+.+...+++++-.. -+...|-.=...+-+.|.
T Consensus 416 larLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 3334444455555554444 2334444444444444445555555554443221 122233333444444455
Q ss_pred hhHHHHHHHHhHhcCCCCCC--hhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHh
Q 007077 170 FEDAVDVFRRMRQGCNLMPD--EGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELF 247 (619)
Q Consensus 170 ~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 247 (619)
.-.+..+...... .|+.-. ..||..-...|.+.+..+-++.++..+++-+|.+...|......--..|..++-..+|
T Consensus 495 v~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 495 VITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred hhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5555555555443 333222 2356666666777777777777887777777777777777777777777777777777
Q ss_pred ccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 007077 248 DEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 248 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 321 (619)
++... +....|-.....+-..|++..|..++.... +.+...|-+-+..-..+.+++.|..+|.+... ..|+.
T Consensus 574 qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTE 651 (913)
T ss_pred HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcc
Confidence 77654 344556666667777788888887776543 33556777777777788888888888887765 45555
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHH
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLA 398 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 398 (619)
..|..-+..---.++.++|.++++..++. ++.-...|..+...+-+.++++.|.+.|..-.+. .+..|-.|...--
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 55555555555667788888888777765 3555667777788888888888888887765532 5667777777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 399 MNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
+.|+.-.|..++++..-. .|+ ...|...++.-.+.|+.+.|..+..+..+ .++.+...|..-|.+..+.++-..+
T Consensus 731 k~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHH
Confidence 888888888888887766 444 55777778888888888888888777776 4455667777777777777777777
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
.+.+++.. +++.. ..++...+....+++.|.+-|.++.+.+|++..+|..+-..+.+.|.-++-.+++.+....
T Consensus 807 ~DALkkce--~dphV---llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~- 880 (913)
T KOG0495|consen 807 IDALKKCE--HDPHV---LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA- 880 (913)
T ss_pred HHHHHhcc--CCchh---HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Confidence 77776664 23333 6777788888999999999999999999999999999999999999999999999988764
Q ss_pred CcccCceeEEE
Q 007077 558 VRKVPGCSSIE 568 (619)
Q Consensus 558 ~~~~~~~~~~~ 568 (619)
.|..|..|+.
T Consensus 881 -EP~hG~~W~a 890 (913)
T KOG0495|consen 881 -EPTHGELWQA 890 (913)
T ss_pred -CCCCCcHHHH
Confidence 3445555643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-13 Score=133.00 Aligned_cols=528 Identities=11% Similarity=0.092 Sum_probs=309.5
Q ss_pred hHHHHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhc---cCCCCCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 007077 3 QLKQIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFG---SIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKL 79 (619)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 79 (619)
+|..+...+++.. |..+..|..|...|- ..|+.+++...+- .+.+.|..-|-.+-....+.|+++.|.-.|.+.
T Consensus 157 eA~~i~~EvIkqd-p~~~~ay~tL~~IyE--qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 157 EAEEILMEVIKQD-PRNPIAYYTLGEIYE--QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHhC-ccchhhHHHHHHHHH--HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3444555555433 334455555555555 5566665555442 334455555555555555666666666666665
Q ss_pred HHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHH----HHHHHhHhcCChhHHHHHHccCCC----
Q 007077 80 RERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCN----SIMDMYGVLGKICNVKKLFDEMPD---- 151 (619)
Q Consensus 80 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~---- 151 (619)
++.. |++...+---...|-+.|+...|...|.++.....+.|..-.. ..+..+...++-+.|.+.++....
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 5542 2333333333444555666666666666665543322222222 223334444555666665555443
Q ss_pred -CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhH--------------------------HHHHHHhhcCC
Q 007077 152 -KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTV--------------------------VSTLSACTALK 204 (619)
Q Consensus 152 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~--------------------------~~ll~~~~~~~ 204 (619)
-+...++.++..+.+...++.|......+.. ....+|..-+ .-+.-+....+
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~-r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRN-RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhc-cccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhccc
Confidence 1334567777777777777777777776654 2222222111 11222234555
Q ss_pred ChHHHHHHHHHHHHh---ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC----CCchhHHHHHHHHHhcCCHHHHHHH
Q 007077 205 NLELGKEIHRYINQE---LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN----KNVICWTSMVSGYVNCGQLEKARDL 277 (619)
Q Consensus 205 ~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 277 (619)
..+....+...+... ...++..+.-+.++|...|++.+|..+|..+.. .+...|-.+..+|...|..+.|...
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 566666666665555 334566788888999999999999999988876 3566888999999999999999999
Q ss_pred HccCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 278 FDRSPVR---DIVLWTAMINGYVQFNRFDEAVALFREMQ--------IIRLKPDKFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 278 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
|+..... +...--.|...+.+.|++++|.+.+..+. ..+..|+..........+.+.|+.++-..+-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9876533 33444456667888999999999998853 223445555555566667777777764444433
Q ss_pred HHHcC----------------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHhc--------CCCChh----hHHH
Q 007077 347 INENR----------------------ITVDAVVATALIEMYAKCGLIEKALEIFYEL--------REKDAA----SWTS 392 (619)
Q Consensus 347 ~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~----~~~~ 392 (619)
++... .+........++.+-.+.++......-...- ..-... .+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 33211 1112222233344444443322222211111 011222 2345
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 007077 393 IICGLAMNGKINKALELFSQMISGGA--KPDD---ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCL 464 (619)
Q Consensus 393 l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 464 (619)
++.++++.+++++|+.+...+..... .++. ..-...+.++...+++..|...++.+...++...+ ...|++.
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 67788999999999999998877542 2222 12234456677889999999999999876544433 3466666
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-CCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 465 IDLLGRAGLLDEAEELIRKIP-NEN--NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
...+.+.|+-.-=.+++.... ..+ .++- ......-....+.+..|...+-++....|++|.+-.+++-++.
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l---~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPPL---ALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcce---eeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 666666665444444444433 221 1222 2222333456788999999999999999999988777776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-12 Score=125.37 Aligned_cols=482 Identities=14% Similarity=0.089 Sum_probs=384.4
Q ss_pred ChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 007077 37 NLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGY 113 (619)
Q Consensus 37 ~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 113 (619)
+.++|+-++.+.. +.+...| -++.+..-|+.|..++...++. +|.+...|.+....--..|+.+...++.++
T Consensus 391 ~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred ChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3344555555432 2333333 3566777889999999998876 777888898888877889999998888776
Q ss_pred HH----HhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC------CCeecHHHHHHHHHcCCChhHHHHHHHHhHhc
Q 007077 114 VV----KTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD------KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG 183 (619)
Q Consensus 114 ~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 183 (619)
-+ ..|+..+...|-.=...|-+.|..-.+..+...... .--.+|..-...|.+.+.++-|..+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq- 544 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ- 544 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-
Confidence 44 467777777777777777777887777777665542 2235899999999999999999999999876
Q ss_pred CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHH
Q 007077 184 CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTS 260 (619)
Q Consensus 184 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 260 (619)
-.+.+...|......-...|..+.-..++..++...|.....+.....-+-..|++..|..++...-+ .+...|-.
T Consensus 545 -vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 545 -VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred -hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34556667777777777889999999999999999999999999999999999999999999988765 35567888
Q ss_pred HHHHHHhcCCHHHHHHHHccCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCcH
Q 007077 261 MVSGYVNCGQLEKARDLFDRSP--VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLGAL 337 (619)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 337 (619)
-+........++.|..+|.+.. .+....|.--+..-.-.+..++|++++++..+ .-|+.. .|..+.+.+-+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHH
Confidence 9999999999999999997654 55677787777777778999999999999887 467665 677778888899999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 338 EQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+.|...|..=.+. +|..+..|-.|...-.+.|.+-.|..+|++..- .+...|-..|..-.+.|+.+.|..+..+.+
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888665443 466778899999999999999999999998763 377899999999999999999999999988
Q ss_pred HCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccH
Q 007077 415 SGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIV 493 (619)
Q Consensus 415 ~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 493 (619)
+. -|+ ...|..-|...-+.++-..+...+. ...-|+++...+...+-...++++|.+.|.+... -++...
T Consensus 781 Qe--cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk-~d~d~G 851 (913)
T KOG0495|consen 781 QE--CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK-KDPDNG 851 (913)
T ss_pred Hh--CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCccc
Confidence 87 444 4566666666666666444444332 3456777888889999999999999999999883 355556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
.+|.-+...+..+|.-+.-.+++.+...-+|.....|.....--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 67999999999999999999999999999999988887766543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-13 Score=122.64 Aligned_cols=446 Identities=14% Similarity=0.146 Sum_probs=244.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhc--cCChhHH-HHHHHHHHHhCCCCChhhHHH
Q 007077 52 CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGW--LGEVKKG-EKVHGYVVKTGLEFDTYVCNS 128 (619)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 128 (619)
.+++=|.|+. +..+|....+.-+|+.|...|++.+...-..+++..+- ..++.-+ ++-|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 3455666664 45667888999999999999887776655555554332 2222221 2333344443322 22222
Q ss_pred HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHH
Q 007077 129 IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLEL 208 (619)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 208 (619)
+.|++.+ ++-+...+...+|..||.++++--..+.|.++|++-.. ...+.+..+|+.+|.+-.-. .
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhh----c
Confidence 4455444 44444556778999999999999999999999999988 67888999999999875433 2
Q ss_pred HHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHc-cCCCCCh
Q 007077 209 GKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFD-RSPVRDI 286 (619)
Q Consensus 209 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~ 286 (619)
.+++...|... ..||..++|+++.+..+.|+++.|.+.+-++. .-+. -...|..
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil------------------------~EmKeiGVePsL 312 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQIL------------------------GEMKEIGVEPSL 312 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHH------------------------HHHHHhCCCcch
Confidence 37777888877 99999999999999999998887765332210 0011 1225555
Q ss_pred hhHHHHHHHHHHcCChhH-HHHHHHHHHHc----C---CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC----CC
Q 007077 287 VLWTAMINGYVQFNRFDE-AVALFREMQII----R---LKP-DKFILVALLTGCAQLGALEQGKWIHGYINENR----IT 353 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g---~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~ 353 (619)
.+|..+|..+++-++..+ |..++.+.+.. . +.| |...|...+..|.+..+.+.|.+++..+.... +.
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 666666666666655533 34444443321 1 222 33456666777777777777777666554321 11
Q ss_pred CC---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007077 354 VD---AVVATALIEMYAKCGLIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFI 426 (619)
Q Consensus 354 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 426 (619)
|+ ..-|..+..+.|.....+.-...|+.|.. ++..+...++.+....|.++-.-+++..++..|..-+.....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e 472 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE 472 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH
Confidence 21 12234455555555555555555555543 244444445555555555655556666655555333333222
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHH-HHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA-GLLDEAEE-LIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
-++..+++.. ..|+...-..+-....++ -++.++.+ --.++....-++ ...+..+-.+.
T Consensus 473 eil~~L~~~k-----------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 473 EILMLLARDK-----------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLL 533 (625)
T ss_pred HHHHHHhcCC-----------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHH
Confidence 2222222211 111111000111111100 01111111 111222222222 23555555666
Q ss_pred HcCCHHHHHHHHHHHhcc---CCCCcch--HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 505 IYGNVDMGEKLAALLEKI---ESKDSSF--HTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~---~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
+.|..++|-+++...... -|..+.. ...+.+.-........|..+++-|...+.
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 777777777776666322 2444331 22344444555667777777777765544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-13 Score=125.86 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=160.6
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHH
Q 007077 332 AQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
...|++++|.+.+++.+...-......|| +.-.+...|++++|+..|-++. ..+......+.+.|-...++..|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34577777777777776654222222333 4445778899999999988765 4577788888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007077 409 LFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN 488 (619)
Q Consensus 409 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 488 (619)
++-+.... ++.|+..+..+...|-+.|+-.+|.+.+-.--+ -++-+.++...|...|....-+++|+.+|++.. -
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 99877655 344567888889999999999999988765443 456678899999999999999999999999875 2
Q ss_pred CcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 489 NEIIVPLYGALLSAC-RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
..|+..-|..++..| .+.|++.+|..+|+......|.+.....-|+.+....|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 445555698887765 568999999999999999999999988888888877774
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-12 Score=119.83 Aligned_cols=493 Identities=12% Similarity=0.078 Sum_probs=357.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 007077 53 LLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDM 132 (619)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 132 (619)
...|-.....=..++++..|..+|++.+... .-+...|.-.+..-.+...+..|..++++.+..-...| ..|-..+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHH
Confidence 3344444444455678889999999998765 33666677788888899999999999999987443333 344555566
Q ss_pred hHhcCChhHHHHHHccCC--CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHH
Q 007077 133 YGVLGKICNVKKLFDEMP--DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGK 210 (619)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 210 (619)
--..|++..|.++|+... +|+..+|.+.|..=.+...++.|..+|++..- +.|+..+|.-....-.+.|+...+.
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 667899999999999876 59999999999999999999999999999854 6699999999999889999999999
Q ss_pred HHHHHHHHhccC---ChhHHHHHHHHHHhcCChhhHHHHhccCCC--C---CchhHHHHHHHHHhcCCH---HHHHHHHc
Q 007077 211 EIHRYINQELEF---TPIMGNALLDMYCKCGCLSEARELFDEMPN--K---NVICWTSMVSGYVNCGQL---EKARDLFD 279 (619)
Q Consensus 211 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~---~~A~~~~~ 279 (619)
.+++.+++.+.. +...+.+....-.++..++.|.-+|.-..+ | ....|..+..-=-+-|+. +++.--=+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999999887443 345667777777788889999988865544 2 233344444333344554 44432222
Q ss_pred -----cCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---HccCcHHHHH
Q 007077 280 -----RSPVR---DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-------ILVALLTGC---AQLGALEQGK 341 (619)
Q Consensus 280 -----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~ 341 (619)
..... |-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 22222 5567777777777889999999999998864 555321 122111122 3567899999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHH----HhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007077 342 WIHGYINENRITVDAVVATALIEMY----AKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMIS 415 (619)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 415 (619)
++++..++. +|....++.-+--+| .++.++..|.+++..... |-..+|...|..-.+.++++.+..+|++.++
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999883 455556665544444 578899999999998763 5667888888888999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHH
Q 007077 416 GGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPL 495 (619)
Q Consensus 416 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 495 (619)
.+ +-+..+|......-...|+.+.|..+|+-.+....+......|.+.|+.-...|.+++|..+++++...... ...
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kv 542 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKV 542 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chH
Confidence 84 335678888888888899999999999999876444445667888888888999999999999998843221 223
Q ss_pred HHHHHHHHH-----HcC-----------CHHHHHHHHHHHh----ccCCCCcc--hHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 496 YGALLSACR-----IYG-----------NVDMGEKLAALLE----KIESKDSS--FHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 496 ~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~----~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
|-++..--. +.| +...|..+|+++. +.+|.... ....+-+.-...|...+...+-.+|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 777665433 334 6778899998884 34443332 1223333444557777777777777
Q ss_pred Hh
Q 007077 554 KE 555 (619)
Q Consensus 554 ~~ 555 (619)
++
T Consensus 623 Pk 624 (677)
T KOG1915|consen 623 PK 624 (677)
T ss_pred cH
Confidence 63
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-13 Score=136.04 Aligned_cols=332 Identities=15% Similarity=0.124 Sum_probs=210.9
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhcc---CCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 007077 202 ALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDE---MPNKNVICWTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 278 (619)
..|+.+.|..++..+++..|.++..|..|...|-..|+.+++...+-. +...|..-|..+.....+.|.+++|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 347888888888888877777777788888888888877777665432 22345556666666666677777776666
Q ss_pred ccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 007077 279 DRSPV---RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD 355 (619)
Q Consensus 279 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (619)
.+..+ ++...+---+..|-+.|+...|+..|.++.+...+.|..-+-.++
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i--------------------------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI--------------------------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH---------------------------
Confidence 65442 233333344555666677777777766666543211111111111
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--------------
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMISG-------------- 416 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------------- 416 (619)
...++.|...++-+.|.+.++.... -+...++.++..|.+..+++.|......+...
T Consensus 284 ----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 284 ----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 1123333333444444444444332 12334455555555555555555555554441
Q ss_pred -------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHH
Q 007077 417 -------------GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP--KLEHYGCLIDLLGRAGLLDEAEELI 481 (619)
Q Consensus 417 -------------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 481 (619)
++.++... ..+.-++.+....+....+....... .+.| +...|.-+.++|...|++.+|+.+|
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11222222 11112223333344444444444443 5333 4778999999999999999999999
Q ss_pred hhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccc
Q 007077 482 RKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKV 561 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 561 (619)
..+...+...+...|--+..+|...|.+++|.+.|+++....|++..+...|+.+|.+.|+.++|.+.+..+...+....
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 99987666666667999999999999999999999999999999999999999999999999999999999874443333
Q ss_pred CceeE
Q 007077 562 PGCSS 566 (619)
Q Consensus 562 ~~~~~ 566 (619)
+++.|
T Consensus 518 e~~a~ 522 (895)
T KOG2076|consen 518 EACAW 522 (895)
T ss_pred hhccc
Confidence 44444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-13 Score=123.10 Aligned_cols=217 Identities=14% Similarity=0.085 Sum_probs=176.3
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHH
Q 007077 333 QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALEL 409 (619)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 409 (619)
-.|+.-.+.+-++..++....+ ...|--+..+|....+.++-...|+...+ .|+.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4578888888888888875333 33366677789999999999999998764 4788899888888899999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC
Q 007077 410 FSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP-NE 487 (619)
Q Consensus 410 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 487 (619)
|++.+.. .|.. ..|..+..+..+.+.++++...|+..+++ ++.-++.|+.....+...+++++|.+.|+... .+
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999987 6654 47777777778899999999999999884 45568899999999999999999999998766 22
Q ss_pred CC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 488 NN------EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 488 ~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+. .+.+.+-.+++-.-.+ +++..|+.+++++.+++|....+|..|+......|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2222223334433334 9999999999999999999999999999999999999999999998653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-16 Score=145.52 Aligned_cols=258 Identities=17% Similarity=0.141 Sum_probs=112.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV-ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
.+...+.+.|++++|++++++......+|+...|- .+...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34666778888888888886654443245444443 34445566788888888888888765 3356667777777 688
Q ss_pred CCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 370 GLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 370 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
+++++|.++++..-+ +++..+..++..+.+.++++++.++++++.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998887643 466778888889999999999999999987643 23456677788888999999999999999
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 447 TMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 447 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+..+. .| |......++..+...|+.+++.++++..... .+.+...|..+..++...|++++|...++++.+..|+
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99875 45 4778889999999999999988888776532 1223334889999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 526 DSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
|+.....+++++...|+.++|.+++++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-14 Score=135.03 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=188.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 300 NRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENR--ITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 300 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
-+..+|+..|...... +.-.......+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=...---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567788888774432 33344566777788888888888888888877643 11245566666544332111111111
Q ss_pred HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 378 IFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
-+-.+....+.+|.++.++|..+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+... + .
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--V 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--C
Confidence 111222346788888888888888888888888888876 66 35677777777777788888888887765 2 3
Q ss_pred ChhHHH---HHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 007077 457 KLEHYG---CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 457 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
|+.+|+ -+.-.|.+.++++.|+-.|+++.. -+|.+..+...+...+.+.|+.++|+++++++..++|.++..-...
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc-CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 444444 456678888888888888888873 3555666677777778888888888888888888888888888888
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhccc
Q 007077 534 ANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQN 606 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 606 (619)
+.++...+++++|++.++++++ .-|+-..++..+.++++++...+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccchHH
Confidence 8888888888888888888876 2455566677777777766554433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-11 Score=114.25 Aligned_cols=364 Identities=12% Similarity=0.047 Sum_probs=264.0
Q ss_pred ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhH-HHHHHHHHH
Q 007077 220 LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLW-TAMINGYVQ 298 (619)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~ 298 (619)
...|+..+-...-.+-+.|....|...|......-+..|.+-+....-..+.+.+..+....+..+...- -.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445555555556677788888888888877665555555555444444455554444433333222111 123456666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhCCCHHHHH
Q 007077 299 FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRI--TVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
..+.++++.-.......|.+-+...-+....+.....++++|+.+|+.+.+... -.|..+|+.++-.-..+.++.--.
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 678889999888888888777766666666677788999999999999998731 125567776663322222222211
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007077 377 EIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ 455 (619)
Q Consensus 377 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 455 (619)
.....+.+-.+.|+.++.+-|.-.++.++|...|++.++. .|.. ..|+.+..-|....+...|.+-++..++ -.+
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 2222333446788888999999999999999999999987 6664 4677777889999999999999999986 335
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
.|-..|..|..+|.-.+.+.-|+-.|++... -.|.+...|.+|..+|.+.++.++|++.|+++......+..++..|++
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE-LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 6789999999999999999999999999883 244556669999999999999999999999999999888899999999
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 536 IYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
+|.+.++.++|.+.+++-.+.-. ..+ ...|+...+...|.+-+..+++..+..
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~----------~eg---------~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSE----------LEG---------EIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH----------hhc---------ccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99999999999999998775210 000 124556666666777766666655443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-13 Score=132.21 Aligned_cols=198 Identities=14% Similarity=0.063 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSA 431 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 431 (619)
+.+|.++.++|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.. .|... +|..+...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhh
Confidence 3444455555555555555555555544322 334444555555666677777777766533 55543 66677777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
|.+.++++.|.-.|+.+. .+.|. ......+...+.+.|+.++|+++++++..- ++.++..--.-+..+...++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred eeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHhhcchH
Confidence 788888888888887776 44554 455566777788888889999988887722 3333222334445577789999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
+|.+.++++.++.|++...+..++.+|.+.|+.+.|+.-+--|.+...+
T Consensus 575 eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 575 EALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999999999999999888877765443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=128.21 Aligned_cols=277 Identities=10% Similarity=0.024 Sum_probs=195.8
Q ss_pred cCCHHHHHHHHccCCCC--Chhh-HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCcHHHHHH
Q 007077 268 CGQLEKARDLFDRSPVR--DIVL-WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV--ALLTGCAQLGALEQGKW 342 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 342 (619)
.|+++.|++.+...... ++.. |........+.|+++.|...+.++.+ ..|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 2222 32233444778888888888888876 345543222 33566778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC---h--------hhHHHHHHHHHhCCChHHHHHHHH
Q 007077 343 IHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD---A--------ASWTSIICGLAMNGKINKALELFS 411 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~l~~~~~~~g~~~~A~~~~~ 411 (619)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 6677788888888888889988888888877532 1 133333444444455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc
Q 007077 412 QMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI 491 (619)
Q Consensus 412 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 491 (619)
.+... .+.+......+..++...|+.++|...+++..+. +|+.... ++.+....++.+++++.+++... ..+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk-~~P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK-QHGD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHh-hCCC
Confidence 65443 1345667788888899999999999999888753 4554322 23333456899999999988773 2444
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+...+.++...|...|++++|.+.|+++.+..|++.. +..++.++.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455888889999999999999999999999998877 77899999999999999999987654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-12 Score=127.66 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=99.6
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
++.....+...|.+.|++++|.+++..+.+.+..++.. ...+- ...+..++.
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------------------------~~a~~~l~~ 237 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------------------------QQAWIGLMD 237 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH---------------------------HHHHHHHHH
Confidence 45566666667777777777777777776655432211 11000 001111222
Q ss_pred HHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007077 365 MYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 441 (619)
......+.+...++++.+.+ .++.....+...+...|+.++|...+++..+. .|+.... ++.+....++.+++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~a 313 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQL 313 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHH
Confidence 22222333444444444432 24555555555666666666666666655553 3333211 12222334556666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 442 RRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
.+..+...+. .+-|...+.++...+.+.|++++|.+.|++.... .|+...+..+...+.+.|+.++|.+++++...
T Consensus 314 l~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 314 EKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666655543 2333445555566666666666666666655522 22333355555566666666666666665544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-12 Score=126.34 Aligned_cols=442 Identities=13% Similarity=0.085 Sum_probs=247.1
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 6 QIQAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQS----PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
.++..+-..|+.|+..+|.++|..|+ ..|+.+.|- +|..|+- -+...++.++.++.++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 46777888999999999999999999 999999998 8876652 23344555665555555555443
Q ss_pred CCCCCCcccHHHHHHHHhccCChhHH---HHHHHHHH----HhCC-----------------CCChhhHHHHHHHhHhcC
Q 007077 82 RGVSPDNFTYPFVFKAVGWLGEVKKG---EKVHGYVV----KTGL-----------------EFDTYVCNSIMDMYGVLG 137 (619)
Q Consensus 82 ~~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~g 137 (619)
.|-+.||..++.+|...||+..- ++.++.+. ..|+ -||.. .++....-.|
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eg 153 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEG 153 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHH
Confidence 45555666666666666654331 11111111 1111 01111 1111111122
Q ss_pred ChhHHHHHHccC---------------------------------C-CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhc
Q 007077 138 KICNVKKLFDEM---------------------------------P-DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG 183 (619)
Q Consensus 138 ~~~~A~~~~~~~---------------------------------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 183 (619)
-++.+.+++..+ . .++..+|...+..-..+|+.+.|..++.+|++
T Consensus 154 lwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke- 232 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE- 232 (1088)
T ss_pred HHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH-
Confidence 222222222222 2 26778888888888899999999999999999
Q ss_pred CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHH-----------------
Q 007077 184 CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARE----------------- 245 (619)
Q Consensus 184 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~----------------- 245 (619)
.|++.+.+.|..++-+ .++......+...+... +.|+..++...+....++|....+..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 8998888877777655 67777777777777666 77777776655555444433222111
Q ss_pred -------HhccC---------CC-------CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC-------ChhhHHHHHHH
Q 007077 246 -------LFDEM---------PN-------KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR-------DIVLWTAMING 295 (619)
Q Consensus 246 -------~~~~~---------~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~ 295 (619)
.++.- ++ .....|...+.. ..+|.-+....+-..+..| ++..|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 11100 00 011122222221 1244444444444333322 33344433333
Q ss_pred HHHc----------------------CChhHHHHHHHHHHHcCCCCCHH----------------------------HHH
Q 007077 296 YVQF----------------------NRFDEAVALFREMQIIRLKPDKF----------------------------ILV 325 (619)
Q Consensus 296 ~~~~----------------------g~~~~A~~~~~~m~~~g~~p~~~----------------------------~~~ 325 (619)
|.+. ....+..++.... .||.. .-.
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 3221 1111111111111 22211 122
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHh
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD------AASWTSIICGLAM 399 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~ 399 (619)
.++..|++.-+..++...-+.....-+ ...|..||+.++.....+.|..+.++...++ ..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 334444444444444433333322221 2568889999999999999999999888663 4457778888889
Q ss_pred CCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 400 NGKINKALELFSQMISGGA-KPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
.+....+..+++++.+.-. .|+ ..++..++......|+.+.-.++++-+... |+..+ .-++....+.++...|
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEeeccchhhh
Confidence 9999999999998876422 232 346666777777778877777777666543 43321 2233333444555555
Q ss_pred HHHHh
Q 007077 478 EELIR 482 (619)
Q Consensus 478 ~~~~~ 482 (619)
.+.++
T Consensus 616 ~ea~e 620 (1088)
T KOG4318|consen 616 QEAPE 620 (1088)
T ss_pred hhcch
Confidence 44443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-12 Score=118.66 Aligned_cols=257 Identities=10% Similarity=0.042 Sum_probs=186.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVA--LLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
.-|.+.|+++.|+++++-..+..-+.-...-+. .+.-+.-..++..|.++-+..+... .-++...+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 347789999999999988765443322222222 2222223346667766666554432 2233333333334456799
Q ss_pred HHHHHHHHHhcCCCChhhHHHHH---HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007077 372 IEKALEIFYELREKDAASWTSII---CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
+++|.+.|++....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999988766544443 4577889999999999887643 2345567778888898899999999999877
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.. -++.|+.....|.+.|-+.|+-..|.+..-.-- +-.+-+..+..-|..-|....-.+.++..|+++.-+.|+...
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 64 566678999999999999999999998775543 223344455666777788888899999999999999999888
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.-..++.++.+.|++..|..+++....
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 556678888999999999999998864
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-11 Score=112.43 Aligned_cols=265 Identities=14% Similarity=0.047 Sum_probs=213.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=..+++. .|..+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44555556666788899999999999987753 445555666666788888877777666667665 4778889999999
Q ss_pred HHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHH
Q 007077 365 MYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDE 440 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 440 (619)
.|.-.|+..+|.+.|.+...- -...|-....+|+-.|..++|+..|...-+. -|.. ..+.-+..-|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999987644 4678999999999999999999999887765 3332 234445567888999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP------NENNEIIVPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
|.++|.+... -.+-|+...+-+.-.....+.+.+|..+|+... ........++++.|.-+|++.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999998874 223457777878877888899999999998655 11111245569999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 515 LAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 515 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+++++.+.|.+..+|..++-+|...|+++.|...+.+...
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-11 Score=110.73 Aligned_cols=356 Identities=12% Similarity=0.076 Sum_probs=239.6
Q ss_pred CCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHH--HH
Q 007077 119 LEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVV--ST 196 (619)
Q Consensus 119 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~l 196 (619)
...|...+-.....+-+.|..+.|+..|.+....-+..|.+.+....-..+.+.+..+.. +.+.|...+. .+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~------~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV------GLPSDMHWMKKFFL 233 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh------cCcccchHHHHHHH
Confidence 344544443344445567788888888877766555556555543332333333322221 2222222211 23
Q ss_pred HHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC------CCchhHHHHHHHHHhcC
Q 007077 197 LSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN------KNVICWTSMVSGYVNCG 269 (619)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g 269 (619)
..++......+.+.+-.+..... ++.+...-+....+.-...++++|+.+|+++.+ .|..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 34455555666776666666666 777777777777778888899999999999886 25566766654433332
Q ss_pred CHHH-HHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHH
Q 007077 270 QLEK-ARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD-KFILVALLTGCAQLGALEQGKWIHGYI 347 (619)
Q Consensus 270 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 347 (619)
.+.- |..++ .+.+--+.|...+.+-|.-.++.++|+..|++..+. .|. ...++.+.+-|....+...|.+-++.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 22222 222234456677788888889999999999988874 444 346777778888888999999999888
Q ss_pred HHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 007077 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT 424 (619)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 424 (619)
++-. |.|-..|-.|.++|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|+..|.+....| ..+...
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~ 468 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSA 468 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHH
Confidence 8865 6677888889999998888888888888765 3488889999999999999999999999888776 446678
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhc---C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVY---Q-IQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+..+...+-+.++.++|...|+..++.. | +.|. .....-|...+.+.+++++|........
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8888888888888888888888766532 1 2231 2333335666778888888776655544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=123.55 Aligned_cols=269 Identities=11% Similarity=0.057 Sum_probs=158.2
Q ss_pred HHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCC
Q 007077 74 LLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKD 153 (619)
Q Consensus 74 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 153 (619)
.++..+...|+.||.+||..++.-||..|+.+.|- +|..|.-...+.+..+++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888888888888888888777 8888877777777778888888888888776664 677
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHH-hHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRR-MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
+.+|+.|..+|...|+... ++..++ |. .+...+...|.......++..+.- .|........++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe-------------~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLE-------------SINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHH-------------HHHhhhhhhccCcHHHHHHhhccc-CcccchhHHHHHH
Confidence 7788888888888887655 222222 21 111222222222222222211110 1111111123333
Q ss_pred HHHhcCChhhHHHHhccCCC--CCchhHHHHHHHHHhc-CCHHHHHHHHccCC-CCChhhHHHHHHHHHHcCChhHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPN--KNVICWTSMVSGYVNC-GQLEKARDLFDRSP-VRDIVLWTAMINGYVQFNRFDEAVAL 308 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 308 (619)
...-.|-++.+++++..++. .+. +...+++-.... ..+++-........ .+++.+|.+.+.+-..+|+.+.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 34444555666666655543 111 111112222211 12233333333333 36777777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 309 FREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
+.+|.+.|.+.+.+.|-.++-+ .++...+..+++-|.+.|+.|+..++...+..+...
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 7777777777777766666654 666667777777777777777777776555554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-11 Score=123.14 Aligned_cols=255 Identities=13% Similarity=0.022 Sum_probs=146.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 007077 293 INGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLI 372 (619)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 372 (619)
...+.+.|+++.|.+.+.+..+....++..........+...|+++.|...++.+.+.. |.++.+...+...|...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence 44455556666666666665543211111122223455555666666666666666654 44555566666666666666
Q ss_pred HHHHHHHHhcCCC---ChhhHHH----HHHHHHhCCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCcHHH
Q 007077 373 EKALEIFYELREK---DAASWTS----IICGLAMNGKINKALELFSQMISGGAKP-----DDITFIGVLSACSHGGLVDE 440 (619)
Q Consensus 373 ~~A~~~~~~~~~~---~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~ 440 (619)
++|.+.+..+.+. +...+.. ...++...+..+++.+.+..+.+. .| +...+..+...+...|+.++
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 6666666665532 2222211 111112222333333444444443 23 45566666677777777777
Q ss_pred HHHHHHHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007077 441 GRRFFNTMTEVYQIQPKLEH---YGCLIDLLGRAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLA 516 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (619)
|.+.+++..+. .||... .....-.....++.+++.+.+++.. ..|+.|......++...|.+.|++++|.+.|
T Consensus 282 A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 282 AQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 77777777653 233221 1111112233466777777776655 2334442245678888888888888888888
Q ss_pred H--HHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 517 A--LLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 517 ~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+ .+.+..|++.. +..++.++.+.|+.++|.+++++..
T Consensus 359 e~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 359 KNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 46667777666 6688888888888888888888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-11 Score=118.69 Aligned_cols=146 Identities=12% Similarity=0.031 Sum_probs=97.5
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHH
Q 007077 373 EKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITF---IGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 373 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~ 446 (619)
+...+.++...+ .++..+..++..+...|++++|.+++++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344445555543 36777888888888888888888888888876 5554421 111122234577788888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+.+.-.|+.....++...+.+.|++++|.+.|++...-...|+...+..+...+.+.|+.++|.+++++..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87764322222256668888888889999999988842211123334447788888888999999988888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-14 Score=133.75 Aligned_cols=260 Identities=15% Similarity=0.171 Sum_probs=91.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHCCCCCCccc-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhc
Q 007077 58 LLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFT-YPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVL 136 (619)
Q Consensus 58 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 136 (619)
.+...+.+.|++++|+++++.......+|+... |..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 445666777888888888865444432344433 334444555677788888888887765532 45556666666 577
Q ss_pred CChhHHHHHHccCCC--CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 007077 137 GKICNVKKLFDEMPD--KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHR 214 (619)
Q Consensus 137 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (619)
+++++|.+++...-+ +++..+..++..+.+.++++++.++++........+++...|......+.+.|+.+.|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 778888777766532 455667777777888888888888888876533445566667777777778888888888888
Q ss_pred HHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHH
Q 007077 215 YINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMIN 294 (619)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 294 (619)
.+.+..|.++.+.+.++..+...|+.+++.++++...+ ..+.|+..|..+..
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~----------------------------~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK----------------------------AAPDDPDLWDALAA 222 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------------------------H-HTSCCHCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH----------------------------HCcCHHHHHHHHHH
Confidence 88887777788888888888888877776665544321 11345556667777
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYIN 348 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 348 (619)
+|...|++++|+.+|++..+.. +.|......+..++...|+.++|.++..++.
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred Hhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 7777777777777777766532 3355566667777777777777777666553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-09 Score=102.38 Aligned_cols=142 Identities=15% Similarity=0.228 Sum_probs=69.4
Q ss_pred hcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChh-hHHHHHHHhhcCCChHHHH
Q 007077 135 VLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEG-TVVSTLSACTALKNLELGK 210 (619)
Q Consensus 135 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~ 210 (619)
..+++..|..+|+.... ++...|-..+..=.++..+..|..++++... +-|-.. .|---+..--..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 34556666666666554 3444555555555666666666666666543 222221 1222222223345555555
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCC--CCCchhHHHHHHHHHhcCCHHHHHHHHcc
Q 007077 211 EIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMP--NKNVICWTSMVSGYVNCGQLEKARDLFDR 280 (619)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (619)
++|+...+ ..|+...+.+.++.-.+-..++.|..+|++.. .|++.+|-....-=.+.|....|..+|++
T Consensus 162 qiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 162 QIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 55544333 34445555555555555555555555555433 24444444444444444554444444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-10 Score=106.28 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=177.1
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA 375 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 375 (619)
+.-.|+...|...|+..+.....++.. |.-+...|....+.++....|....+.+ +.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 455789999999999998865444432 7777778999999999999999999876 66778888888888999999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 376 LEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 376 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
..-|++...- ++..|-.+..+.-+.+++++++..|++.+.. -|+ +..|+.....+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998764 4556666666667889999999999999988 666 568999999999999999999999998753
Q ss_pred cCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 452 YQIQPK---------LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 452 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
.|+ +.+--.++-.- =.+++..|..++++.. +-++.....|.+|...-.+.|+.++|+++|++...+
T Consensus 492 ---E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~-e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 ---EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI-ELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH-ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344 11111222222 2389999999999998 447777778999999999999999999999998765
Q ss_pred CCC
Q 007077 523 ESK 525 (619)
Q Consensus 523 ~p~ 525 (619)
...
T Consensus 567 Art 569 (606)
T KOG0547|consen 567 ART 569 (606)
T ss_pred HHh
Confidence 443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-10 Score=102.50 Aligned_cols=283 Identities=13% Similarity=0.151 Sum_probs=154.2
Q ss_pred CCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCC--hhHHHHHHHHHHhcCChhh
Q 007077 167 CMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFT--PIMGNALLDMYCKCGCLSE 242 (619)
Q Consensus 167 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~ 242 (619)
+.++++|+++|-+|.+ +-+-+..+-.++.+.+.+.|..+.|..+|..+.++ .+.+ ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4667777777777765 22222223344555566666666666666666654 1111 1223455566666677777
Q ss_pred HHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 007077 243 ARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF 322 (619)
Q Consensus 243 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 322 (619)
|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+-++..+
T Consensus 126 AE~~f~~L~de~ef----------------------------a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 126 AEDIFNQLVDEGEF----------------------------AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHHHHHHhcchhh----------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 77666665442111 12234445666666666666666666666655444332
Q ss_pred ----HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh----hhHHHHH
Q 007077 323 ----ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA----ASWTSII 394 (619)
Q Consensus 323 ----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~ 394 (619)
.|.-+...+....+.+.|...+.+..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 23344444445556666666666665554 33334444556666677777777777777665553 3445566
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---c
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR---A 471 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~ 471 (619)
.+|.+.|+.++....+.++.+. .+....-..+...-....-.+.|..++.+-..+ +|+...+..+++.-.. .
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccc
Confidence 6777777777777777777666 333333333333333333344454444443332 4777777666665432 2
Q ss_pred CCHHHHHHHHhhCC
Q 007077 472 GLLDEAEELIRKIP 485 (619)
Q Consensus 472 g~~~~A~~~~~~~~ 485 (619)
|...+.+.++++|.
T Consensus 332 g~~k~sL~~lr~mv 345 (389)
T COG2956 332 GRAKESLDLLRDMV 345 (389)
T ss_pred cchhhhHHHHHHHH
Confidence 33444444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-10 Score=109.20 Aligned_cols=435 Identities=12% Similarity=0.076 Sum_probs=244.0
Q ss_pred CCCCChhHHHHHHHHhccCCCCChhHHHHhhc--cCCCCCcccHHHHHHHHHhcCChhHHHHHHH----HhHHCC-----
Q 007077 15 GLQQNPETLNKLMVFCTHPSHGNLLYAEKIFG--SIQSPCLLAYNLLIKAFAKKGSFRKSLLLFS----KLRERG----- 83 (619)
Q Consensus 15 g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~~----- 83 (619)
|+..||.---.+.+++. -.|+++.|-.+.. .+...|..+......++.+..+|+.|..++. .+....
T Consensus 44 ~l~~dp~d~~~~aq~l~--~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLY--LGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 44456655566777776 6778888877765 4557888888889999999999999999988 222110
Q ss_pred ----CCCCccc----HHHHHH-------HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhc-CChhHHHHHHc
Q 007077 84 ----VSPDNFT----YPFVFK-------AVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVL-GKICNVKKLFD 147 (619)
Q Consensus 84 ----~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~ 147 (619)
+.+|..- -+.-.+ .+....+.++|...+.+... .|...+..+...-... -...+-..+|+
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~ 197 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLE 197 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHh
Confidence 1111111 111112 22233445556555555544 3333333322221110 00112223333
Q ss_pred cCCC-----CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 007077 148 EMPD-----KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEF 222 (619)
Q Consensus 148 ~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 222 (619)
..+- -+......+.....-...-+.....-.+-.- .+..-+..........|-..+++....++.+.+.+..|+
T Consensus 198 ~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl-~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf 276 (611)
T KOG1173|consen 198 SLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL-IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF 276 (611)
T ss_pred cccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh-hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC
Confidence 2210 0111111111100000000000000000000 223334444445555566778888888888888888777
Q ss_pred ChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCC---hhhHHHHHHHH
Q 007077 223 TPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRD---IVLWTAMINGY 296 (619)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~ 296 (619)
....+..-|..+...|+..+-..+=.++.+ ....+|-++.--|.-.|+.++|++.|.+...-| ...|-.+...|
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 777777777777777776665555555544 345678888777777788888888887655333 35788888888
Q ss_pred HHcCChhHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHH
Q 007077 297 VQFNRFDEAVALFREMQII--R-LKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIE 373 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~--g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 373 (619)
.-.|..|+|+..|...-+. | ..| +.-+..-|.+.++.+.|.+.|.+..... |.|+.+.+-+.-.....+.+.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH
Confidence 8888888888888776542 1 122 2223334667778888888887776653 566777777777677777777
Q ss_pred HHHHHHHhcCCC----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 374 KALEIFYELREK----------DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 374 ~A~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
+|...|+....+ =..+++.|..+|.+.+.+++|+..|++.+... +-+..++.++.-.+...|+++.|.+
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH
Confidence 777777765421 12235555566666666666666666655541 2234455555555666666666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHH
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
.|.+.. .+.|+..+-..++
T Consensus 511 ~fhKaL---~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 511 HFHKAL---ALKPDNIFISELL 529 (611)
T ss_pred HHHHHH---hcCCccHHHHHHH
Confidence 666554 4455544433333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-08 Score=96.44 Aligned_cols=504 Identities=15% Similarity=0.181 Sum_probs=312.1
Q ss_pred hhHHHHHHHHhccCCCCChhHHHHhhccC----C-CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHH
Q 007077 20 PETLNKLMVFCTHPSHGNLLYAEKIFGSI----Q-SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFV 94 (619)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~~a~~~~~~~----~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 94 (619)
+.+|-.-++... ++|++...+..|++. | ......|...+......|-++-++.+|++-++. ++..-...
T Consensus 102 pRIwl~Ylq~l~--~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLI--KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CHHHHHHHHHHH--hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 344444445555 778888888888743 3 234567888888888888888899999888764 33336677
Q ss_pred HHHHhccCChhHHHHHHHHHHHh------CCCCChhhHHHHHHHhHhcCC---hhHHHHHHccCCC--CCe--ecHHHHH
Q 007077 95 FKAVGWLGEVKKGEKVHGYVVKT------GLEFDTYVCNSIMDMYGVLGK---ICNVKKLFDEMPD--KDV--VSWNVSI 161 (619)
Q Consensus 95 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~--~~~--~~~~~li 161 (619)
+..+++.+++++|.+.+...+.. ..+.+...|..+.+..++..+ --....+++.+.. +|. ..|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 77888888999888888776532 123444566666666655433 2234445555543 233 3799999
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcC----------------C------ChHHHHHHHHHHHHh
Q 007077 162 SGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTAL----------------K------NLELGKEIHRYINQE 219 (619)
Q Consensus 162 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~ 219 (619)
.-|.+.|.++.|.++|++-.+ . ......|+.+..+|+.- + +++....-++.+...
T Consensus 256 dYYIr~g~~ekarDvyeeai~-~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQ-T--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHH-h--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999988655 1 12233344444433221 1 122222223332221
Q ss_pred ------------ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC-------C--CchhHHHHHHHHHhcCCHHHHHHHH
Q 007077 220 ------------LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN-------K--NVICWTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 220 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~ 278 (619)
.+.++..+..-+. +..|+..+-...|.+... + -...|..+...|-..|+++.|..+|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1222222222222 223444444444444332 1 2235889999999999999999999
Q ss_pred ccCCCCCh-------hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHcc
Q 007077 279 DRSPVRDI-------VLWTAMINGYVQFNRFDEAVALFREMQIIRLK----------P-------DKFILVALLTGCAQL 334 (619)
Q Consensus 279 ~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~~~~~ll~~~~~~ 334 (619)
++...-+- .+|......=.++.+++.|+++++......-. | +...++..++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 98764322 35666666667788899999988876532111 1 122344445555567
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CC-hhhHHHHHHHHHh---CCChHHH
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE----KD-AASWTSIICGLAM---NGKINKA 406 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~l~~~~~~---~g~~~~A 406 (619)
|-++..+.+++.+++..+.. +.+.......+....-++++.+++++-.. |+ ...|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 78888999999999887543 33333344445666778999999998653 33 3467776655543 3468999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHh-------cCCHH
Q 007077 407 LELFSQMISGGAKPDDITFIGVL--SACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGR-------AGLLD 475 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~-------~g~~~ 475 (619)
..+|++.++ |++|...-+.-++ ..-..-|....|..++++... ++++. ..+|+..|.--.. .+-++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 999999998 6777654222222 223456889999999999766 55554 4567766643322 12344
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhCCChH
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK--DSSFHTLLANIYASANRWE 544 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 544 (619)
+|++.+ |+........-+...-.+.|.++.|..++.-..++.|+ ++..|...-..=.+.|+-+
T Consensus 647 kaIe~L------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 647 KAIESL------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 444432 22222222334445557789999999999888777654 5566777777777888833
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-10 Score=101.63 Aligned_cols=286 Identities=15% Similarity=0.140 Sum_probs=118.6
Q ss_pred CCHHHHHHHHccCCCCChh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCcHHHHHH
Q 007077 269 GQLEKARDLFDRSPVRDIV---LWTAMINGYVQFNRFDEAVALFREMQIIRLKPD---KFILVALLTGCAQLGALEQGKW 342 (619)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~ 342 (619)
.+.++|.++|-.|...|+. +.-+|.+.|.+.|..|.|+++-+.+.++.--+. ......|..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4455555555444433332 223344455555555555555554443211111 0122233334444455555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChh--------hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 343 IHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAA--------SWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+.. .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555544432 112223344445555555555555544443322111 12223333334444555555555554
Q ss_pred HCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc
Q 007077 415 SGGAKPDDIT-FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI 491 (619)
Q Consensus 415 ~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 491 (619)
+. .|+.+- -..+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++....+.++......+
T Consensus 208 qa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 208 QA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred hh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 44 333321 122223444455555555555554433 222 3334444455555555555555554444222222
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh--CCChHHHHHHHHHHHhCCCcccC
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS--ANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
.. -..+...-....-.+.|...+.+-....|.-...|..+-.-+.. .|++.+-+..+++|....++..|
T Consensus 283 ~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 283 DA--ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred cH--HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 21 22222222233333444444444444444444423222222222 23455555555666554444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-08 Score=97.22 Aligned_cols=490 Identities=12% Similarity=0.087 Sum_probs=298.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhHHC-CCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHH
Q 007077 54 LAYNLLIKAFAKKGSFRKSLLLFSKLRER-GVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDM 132 (619)
Q Consensus 54 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 132 (619)
..|-.-+..+.++|+...-...|+..+.. .+.-....|...+......+-++.+..++++.++ .++..-+.-|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence 56777788888999999999999887654 2222345688888888888889999999999887 344457778888
Q ss_pred hHhcCChhHHHHHHccCCCC----------CeecHHHHHHHHHcCCChhH---HHHHHHHhHhcCCCCCCh--hhHHHHH
Q 007077 133 YGVLGKICNVKKLFDEMPDK----------DVVSWNVSISGHVKCMRFED---AVDVFRRMRQGCNLMPDE--GTVVSTL 197 (619)
Q Consensus 133 ~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p~~--~~~~~ll 197 (619)
+++.+++++|.+.+...... +-..|..+-...+++-+.-. .-.+++.+ .+.-||. ..|.++.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g---i~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG---IRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh---cccCcHHHHHHHHHHH
Confidence 99999999999888877642 33456666665555443332 23334433 3344554 3678888
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC----------------------hhhHHHHhccCCC---
Q 007077 198 SACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC----------------------LSEARELFDEMPN--- 252 (619)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~~~~--- 252 (619)
.-|.+.|.++.|..+++.....+. ...-++.+.+.|..-.. ++-...-|+.+.+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVM-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhe-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 889999999999999988877611 11222333333332111 1111222222221
Q ss_pred ------------CCchhHHHHHHHHHhcCCHHHHHHHHccCC-------CC--ChhhHHHHHHHHHHcCChhHHHHHHHH
Q 007077 253 ------------KNVICWTSMVSGYVNCGQLEKARDLFDRSP-------VR--DIVLWTAMINGYVQFNRFDEAVALFRE 311 (619)
Q Consensus 253 ------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (619)
.++..|..-+.. ..|+..+-...|.+.. .+ -...|..+.+.|-..|+.+.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 011222222221 2333333333333211 11 124577778888888888888888887
Q ss_pred HHHcCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-----------CC------ChhHHHHHHHHHHhCCC
Q 007077 312 MQIIRLKPD---KFILVALLTGCAQLGALEQGKWIHGYINENRI-----------TV------DAVVATALIEMYAKCGL 371 (619)
Q Consensus 312 m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~ 371 (619)
..+...+-- ..+|......=.+..+++.|..+.+......- ++ +..+|...++.....|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 765432211 12233333333455566677776665532211 11 22345555666666777
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---ccCcHHHHHHH
Q 007077 372 IEKALEIFYELREKDAASWTSIIC---GLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACS---HGGLVDEGRRF 444 (619)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---~~g~~~~a~~~ 444 (619)
++....+++++.+--+.|-..+++ -+-.+.-++++.+.|++-+..--.|+.. .|+..+.-+. ..-.++.|+.+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 777777777776543333333322 2335566788888888876654456653 5666655443 34578999999
Q ss_pred HHHhHHhcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 445 FNTMTEVYQIQPKLE--HYGCLIDLLGRAGLLDEAEELIRKIPNEN-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
|++..+ +.+|... .|-.....-.+-|....|+++++++...- ...-...||..|.--...=-+..-..+|+++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 999987 7776632 22223333346788899999999876321 222334688877665554445666788999998
Q ss_pred cCCCCcch--HHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 522 IESKDSSF--HTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 522 ~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.-|++..- ....++.=.+.|..+.|..++..-.+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 88876543 34557777888999999998877654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-11 Score=110.99 Aligned_cols=199 Identities=13% Similarity=0.039 Sum_probs=163.5
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA 431 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 431 (619)
....+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788889999999999999987653 256678888899999999999999999988763 2345677778888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
+...|++++|...++........+.....+..+..++...|++++|.+.+++.... .+.....+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHH
Confidence 89999999999999998864222334567778889999999999999999987732 33344568888899999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
|...++++....|.++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999988888888888899999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.4e-10 Score=110.29 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=165.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhCCCHHHHHHHHHhcCC-------C---
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINEN-----RI-TVDA-VVATALIEMYAKCGLIEKALEIFYELRE-------K--- 385 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--- 385 (619)
+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++.+|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555666666777777776666665443 10 1222 2233466778888888888888877652 1
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CC
Q 007077 386 -DAASWTSIICGLAMNGKINKALELFSQMIS-----GGAKPDD-I-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQ--IQ 455 (619)
Q Consensus 386 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~ 455 (619)
-..+++.|..+|.+.|++++|...+++..+ .|..+.. . -++.+...|...+.+++|..+++...+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 245677777888888888888777776543 2223332 2 566777788999999999999988766543 22
Q ss_pred CC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---
Q 007077 456 PK----LEHYGCLIDLLGRAGLLDEAEELIRKIPN-------ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK--- 521 (619)
Q Consensus 456 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 521 (619)
++ ..+++.|...|...|++++|.++++++.. ..+......++.+...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 35789999999999999999999987751 11333344578889999999999999999888753
Q ss_pred -cCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 522 -IESKD---SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 522 -~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..|+. ...|..|+.+|.+.|++++|.++.+....
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444 45688999999999999999999998863
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-08 Score=90.70 Aligned_cols=289 Identities=15% Similarity=0.056 Sum_probs=199.7
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFI-LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA 361 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (619)
+.|+.....+..++...|+.++|+..|++.+. +.|+..+ .....-.+.+.|+++....+...+.... ..+...|..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 44777788888888888888888888887654 3454432 1122223456677777766666655432 122233333
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGL 437 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 437 (619)
-........+++.|+.+-++..+. +...+-.-...+...|++++|.-.|+..+.. .|. ..+|..++.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhch
Confidence 344455667888888888876644 4445555557788889999999999888766 654 5689999999998999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLI-DLLG-RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
+.+|...-...... ++.+..+...+. ..+. ...--++|.+++++... -.|......+.+...|...|.++.++.+
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 98888777666553 334444444442 2222 23345788888888773 2444555577788888999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHH
Q 007077 516 AALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDR 595 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 595 (619)
+++.....|+..- +..|++++...+.+.+|++.|..... .+|+.+....-|..
T Consensus 461 Le~~L~~~~D~~L-H~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPDVNL-HNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhhccccHH-HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHH
Confidence 9999888887765 88899999999999999998887765 36777777777777
Q ss_pred HHHHHHHhccc
Q 007077 596 MAKTLLDSKQN 606 (619)
Q Consensus 596 ~~~~~~~~~~~ 606 (619)
+.+++++.+-+
T Consensus 514 lEK~~~~~DAT 524 (564)
T KOG1174|consen 514 LEKSDDESDAT 524 (564)
T ss_pred HHhccCCCCcc
Confidence 77777765533
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-09 Score=96.07 Aligned_cols=467 Identities=14% Similarity=0.126 Sum_probs=260.3
Q ss_pred CCChhHHHHhhccCC------CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHH
Q 007077 35 HGNLLYAEKIFGSIQ------SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGE 108 (619)
Q Consensus 35 ~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 108 (619)
..++..|..+++.-. ..++..| +..++.+.|++++|+..|+.+.... .|+...+..+.-+..-.|.+.+|.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 557777777776332 1122233 3456668899999999998877653 445555555555555677777777
Q ss_pred HHHHHHHHhCCCCChhhHHH-HHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 007077 109 KVHGYVVKTGLEFDTYVCNS-IMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187 (619)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 187 (619)
.+-... |+...... |.+.-.+.++-++-..+-+.+.+. ..---+|.+.....-.+.+|+++|++... -.
T Consensus 112 ~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn 181 (557)
T KOG3785|consen 112 SIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DN 181 (557)
T ss_pred HHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cC
Confidence 765543 34434443 445555666655555544444321 12233444555555678899999999866 23
Q ss_pred CChhhHHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHH
Q 007077 188 PDEGTVVSTLSA-CTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYV 266 (619)
Q Consensus 188 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 266 (619)
|+-...+.-+.. |.+..-++.+..++....+.+|.++...|..+....+.=.-..|..-...+-+.-...| -.+.-++
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hhHHHHH
Confidence 454555544444 46888889999999988888888888887766655543222222221111111000000 0111111
Q ss_pred hc-----CCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 007077 267 NC-----GQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGK 341 (619)
Q Consensus 267 ~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 341 (619)
+. ..-+.|+.++-.+...=+..--.++-.|.+.++..+|..+.+++.- ..|-......+.. +..|+
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aalGQ----- 331 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AALGQ----- 331 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HHhhh-----
Confidence 11 1112222222111111112222333445556666666665554421 1222222211111 11111
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 342 WIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
-......+.-|...|.-.-+ ..+.-..++.+.+.-..++++.+..+.....-
T Consensus 332 -----------------------e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 332 -----------------------ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred -----------------------hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112334444443322 13444566777777777888888888877665
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHH
Q 007077 417 GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY-GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPL 495 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 495 (619)
- ..|...-..+.++.+..|++.+|.++|-.+... .+ .|..+| ..|..+|.++|+++-|.+++-++...+...+ .
T Consensus 389 F-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fs--L 463 (557)
T KOG3785|consen 389 F-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFS--L 463 (557)
T ss_pred h-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHH--H
Confidence 2 333444445678888999999999998776532 22 233444 4567899999999999999988764443333 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
...+..-|.+.+.+--|-+.|+.+..++|.... | .|+-.....++..+....-.|.|
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn-W---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILDPTPEN-W---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc-c---------CCccchHHHHHHHHHcCCCCCCc
Confidence 444556799999999999999999999987654 3 35555566677766654444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-09 Score=98.68 Aligned_cols=277 Identities=13% Similarity=0.067 Sum_probs=170.6
Q ss_pred cCCHHHHHHHHccCCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 007077 268 CGQLEKARDLFDRSPV---RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIH 344 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 344 (619)
.|++.+|+++..+... .....|..-+.+-.+.|+.+.+-.++.+..+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555666555544332 1233344444555666777777777777665433444445555556666677777777777
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-----------hhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 345 GYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD-----------AASWTSIICGLAMNGKINKALELFSQM 413 (619)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m 413 (619)
..+.+.+ +.++.+......+|.+.|++.....++.++.+.. ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666665 4556666777777777777777777777766531 235555655555555555544555554
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCccc
Q 007077 414 ISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP-NENNEII 492 (619)
Q Consensus 414 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 492 (619)
... .+-+...-.+++.-+...|+.++|.++.++..++ +..|.. . ..-...+-++.+.=++..++.. ..|+.|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 332 2334445556666667777778887777777665 444441 1 1112334455555455444433 223333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
..+.+|...|.+++.+.+|...++.+.+..|.... |..+++++.+.|+..+|.+++++..
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44778888888888888888888888887777666 8888888888888888888887765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-09 Score=100.39 Aligned_cols=253 Identities=14% Similarity=0.102 Sum_probs=212.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 007077 299 FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEI 378 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 378 (619)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+..++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999988776544 3456677778889999999999999998875567777788888889999999999988
Q ss_pred HHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHh
Q 007077 379 FYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-------ITFIGVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 379 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
+.++. ..++........+|.+.|++.+...++.+|.+.|.-.++ .++..+++-+...+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 87765 457889999999999999999999999999999876654 36888888888877777777888887
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.. ..+-++..-.+++.-+.++|+.++|.+++.+.....-.+. ...++ .+.+-++.+.-++..++..+..|++|.
T Consensus 256 pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 66 3455566778899999999999999999998886655554 33333 567889999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
.+..|+..|.+.+.|.+|.+.++...+.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997776443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-08 Score=100.91 Aligned_cols=402 Identities=14% Similarity=0.062 Sum_probs=220.8
Q ss_pred CCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHH
Q 007077 118 GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVV 194 (619)
Q Consensus 118 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 194 (619)
.+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..+...|.-..|+.+++.-.....-++|...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3455777777777777788888888888877653 2345677777788888887888887776533111122333333
Q ss_pred HHHHHhh-cCCChHHHHHHHHHHHHh-----ccCChhHHHHHHHHHHhcC-----------ChhhHHHHhccCCCCCchh
Q 007077 195 STLSACT-ALKNLELGKEIHRYINQE-----LEFTPIMGNALLDMYCKCG-----------CLSEARELFDEMPNKNVIC 257 (619)
Q Consensus 195 ~ll~~~~-~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~ 257 (619)
..-..|. +.+..+++..+...++.. -...+..+..+.-+|...- ...++.+.+++..+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---- 473 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---- 473 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc----
Confidence 3333443 446666666666655552 1222333333333333211 011222333332210
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcH
Q 007077 258 WTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGAL 337 (619)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 337 (619)
.+.|+...--+.--|+..++.+.|++..++..+.+-.-+...+..+.-.+...+++
T Consensus 474 ------------------------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 474 ------------------------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 11111111112222344445555555555555543344444444444445555555
Q ss_pred HHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhCCCHHHHHH--------------------------HHHhcC---C--C
Q 007077 338 EQGKWIHGYINE-NRITVDAVVATALIEMYAKCGLIEKALE--------------------------IFYELR---E--K 385 (619)
Q Consensus 338 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~--------------------------~~~~~~---~--~ 385 (619)
..|..+.+.... .|. |......-++.-...++.++|+. ....+. . .
T Consensus 530 ~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 555555444332 111 11111111111111222222222 211111 0 0
Q ss_pred C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 386 D-AASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 386 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
+ +.++..+..-.. -+...+..-.. +...-+.|+. ..|......+...+..++|...+.+... ..+.
T Consensus 608 ~a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l 682 (799)
T KOG4162|consen 608 DAISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPL 682 (799)
T ss_pred ccchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchh
Confidence 1 122222221111 11111100000 1111122221 2344555677888999999988887765 3344
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCcchHHHHH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEK--LAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~ 534 (619)
....|......+...|.+++|.+.|..... -+|..+++..++...+.+.|+...|.. ++..+.+++|.++.+|..++
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA-LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 566777778889999999999999987762 244444559999999999999888888 99999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 007077 535 NIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.++.+.|+.++|.+-|.-...
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHccchHHHHHHHHHHHh
Confidence 999999999999999988764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-10 Score=103.76 Aligned_cols=228 Identities=13% Similarity=0.118 Sum_probs=159.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 290 TAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 290 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-.+|.+..+++.|..++.+-.+. +|.++.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66888899999999999998887764 455567777888888888888888888887765 355666666677778888
Q ss_pred CCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 370 GLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 370 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
++.++|.++|+...+. ++.+..++..+|.-.++++-|+..|+++++.|+. +...|+.+.-+|...++++-+...|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888876643 5666777777888888888888888888888854 55667777777777888888777777
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
+.... -..|+. ....|-.+.......|++..|.+.|+.+..-+|++
T Consensus 383 RAlst-at~~~~---------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 383 RALST-ATQPGQ---------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHhh-ccCcch---------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 76543 222321 11124444444445566666666666666666666
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+++.|+-.-.+.|+.++|..++....+
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666666666666666666666665554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=84.75 Aligned_cols=50 Identities=34% Similarity=0.779 Sum_probs=45.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhc
Q 007077 51 PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGW 100 (619)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 100 (619)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-08 Score=96.47 Aligned_cols=420 Identities=15% Similarity=0.101 Sum_probs=216.5
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHH
Q 007077 100 WLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDV 176 (619)
Q Consensus 100 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 176 (619)
..+++..+.++.+.+.+ +.+....+.....-.+...|+.++|......-.. .+.++|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34555556666655555 2222233333333334445666666665554443 3455666666666666677777777
Q ss_pred HHHhHhcCCCCCCh-hhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---
Q 007077 177 FRRMRQGCNLMPDE-GTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--- 252 (619)
Q Consensus 177 ~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 252 (619)
|..... +.||. ..+..+.-.-++.++++........+.+..+.....|..++.++.-.|+...|..+.+...+
T Consensus 98 y~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 98 YRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 776644 33333 23333333334555555555555555555555555666666666666666666665554432
Q ss_pred --CCchhHHHH------HHHHHhcCCHHHHHHHHccCCCC--C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 007077 253 --KNVICWTSM------VSGYVNCGQLEKARDLFDRSPVR--D-IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 253 --~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 321 (619)
++...+... .....+.|..++|.+.+....+. | ...--+....+.+.++.++|..++..+... .||.
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 222222111 12233445555555554433321 1 112223344455666666666666666553 3555
Q ss_pred HHHHHHHHHHH--ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 007077 322 FILVALLTGCA--QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAM 399 (619)
Q Consensus 322 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 399 (619)
.-|...+..+. -.+..+....++....+.- |. ....-..=++....
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r------------------------------~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKY--PR------------------------------HECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cc------------------------------cccchhccHHHhCc
Confidence 44433333222 1111111112222222110 00 00000000000011
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH-HHHHHHHhHHh---------cCCCCChhH--HHHHHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDE-GRRFFNTMTEV---------YQIQPKLEH--YGCLIDL 467 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~---------~~~~p~~~~--~~~l~~~ 467 (619)
..-.+..-+++..+.+.|++|--..+.++..-=.+..-.++ +..+...+... ..-+|.... +..++..
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 11223334455556666654432232222211000000111 11111111100 001455444 4457788
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
|-+.|+++.|..+++.... ..|..+..|..-...+.+.|++++|...++++.+++-.|..+...-++-..++.+.++|.
T Consensus 381 ~D~~g~~~~A~~yId~AId-HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAID-HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHcccHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 8899999999999998883 345555556666788899999999999999999999888887778888889999999999
Q ss_pred HHHHHHHhCCC
Q 007077 548 NVRQKMKEMGV 558 (619)
Q Consensus 548 ~~~~~m~~~~~ 558 (619)
++..+....|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999887664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-07 Score=91.42 Aligned_cols=443 Identities=14% Similarity=0.142 Sum_probs=247.7
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHH--HHHHhH--h
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNS--IMDMYG--V 135 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 135 (619)
++-+...|++++|.+...++...+ +-|...+..-+-++.+.+.+++|..+.+.- +. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch---hhhcchhhHHHHHHHHH
Confidence 456667788888888888888764 445566777777778888888887554322 11 111111 234444 6
Q ss_pred cCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC-CChhhHHHHHHHhhcCCChHHHHHHHH
Q 007077 136 LGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM-PDEGTVVSTLSACTALKNLELGKEIHR 214 (619)
Q Consensus 136 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 214 (619)
.+..++|...++....-+..+...-...+.+.|++++|+++|+.+.+ .+.. -|...-..++.+-. ..-.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~a~~a---------~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLLAVAA---------ALQV 161 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHH---------hhhH
Confidence 78888888888854444444556666777888888888888888865 2221 11111112221111 0000
Q ss_pred HHHHh---ccC-ChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHcc-CCCC-----
Q 007077 215 YINQE---LEF-TPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDR-SPVR----- 284 (619)
Q Consensus 215 ~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~----- 284 (619)
...+. .+. +-..+-.....+...|++.+|+++++...+ +..+ ....
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~------------------------~~~e~l~~~d~~eE 217 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR------------------------ICREKLEDEDTNEE 217 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------------HHHHhhcccccchh
Confidence 01111 111 111122223345556666666665554311 0000 0100
Q ss_pred Ch-----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCcHHH--HHHHH----------
Q 007077 285 DI-----VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLT---GCAQLGALEQ--GKWIH---------- 344 (619)
Q Consensus 285 ~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~---------- 344 (619)
+. ..--.|...+...|+..+|..+|...++.. .+|........+ +...-.++-. +...+
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 11 123345566778899999999998887764 444432222211 1111111111 11111
Q ss_pred --HHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hhhHHHHHHHH--HhCCChHHHHHHHHHHHHCCCC
Q 007077 345 --GYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD-AASWTSIICGL--AMNGKINKALELFSQMISGGAK 419 (619)
Q Consensus 345 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~g~~ 419 (619)
..+.... ......-+.++.+|. +..+.+.++........ ...+.+++... ++...+..+.+++...-+. .
T Consensus 297 ~l~~Ls~~q-k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~ 371 (652)
T KOG2376|consen 297 LLSKLSKKQ-KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--H 371 (652)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--C
Confidence 1111100 001111133444443 45566777766666543 33344444332 2333578888888888776 5
Q ss_pred CCH--HHHHHHHHHHhccCcHHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----
Q 007077 420 PDD--ITFIGVLSACSHGGLVDEGRRFFN--------TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP---- 485 (619)
Q Consensus 420 p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 485 (619)
|.. ......+......|+++.|.+++. .+.+. .-.+.+...++..+.+.++.+-|.+++.+..
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~---~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA---KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh---ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 554 355556667788999999999998 44432 3334567778888888888777776665543
Q ss_pred -C-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 486 -N-ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 486 -~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
. .+......+|.-+...-.++|+-++|...++++.+..|++..+...++-+|++. +.+.|..+-+++
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 1 111111222444444456779999999999999999999999999999988865 456666665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-09 Score=113.25 Aligned_cols=259 Identities=13% Similarity=0.019 Sum_probs=186.7
Q ss_pred ChhhHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH---------ccCcHHHHHHHHHHHHH
Q 007077 285 DIVLWTAMINGYVQ-----FNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCA---------QLGALEQGKWIHGYINE 349 (619)
Q Consensus 285 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 349 (619)
+...|...+.+-.. .+..++|+..|++..+. .|+.. .+..+..++. ..++.++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 23467899999998874 55543 4544444333 23457899999999988
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HH
Q 007077 350 NRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TF 425 (619)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~ 425 (619)
.. +.+...+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 667788888889999999999999999997643 4667888999999999999999999999987 56543 33
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
..++..+...|++++|...++++... .+|+ ...+..+..+|...|++++|.+.+.++... .+.....++.+...+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHh
Confidence 34444566789999999999998763 2343 556777888999999999999999987632 3333344566666667
Q ss_pred HcCCHHHHHHHHHHHhc---cCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 505 IYGNVDMGEKLAALLEK---IESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
..| +.|...++.+.+ ..|.++. .+..+|.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 477777776654 3344444 366677778888888877 7777654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-08 Score=95.06 Aligned_cols=227 Identities=9% Similarity=0.008 Sum_probs=132.9
Q ss_pred hHHHHHHHHhccCCCCChhHHHHhhccCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHH
Q 007077 21 ETLNKLMVFCTHPSHGNLLYAEKIFGSIQS--P-CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKA 97 (619)
Q Consensus 21 ~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 97 (619)
..+..++..| ..+++...+++.+.+-. | ...|.....-.+...|+-++|......-.+..+. +.+.|..+.-.
T Consensus 9 ~lF~~~lk~y---E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCY---ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH---HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHH
Confidence 4455666666 56666666555554421 1 1122222222345567777777776665554332 55566666666
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHH
Q 007077 98 VGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 98 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 174 (619)
+....++++|.+.+..+.+.+. .|...+.-+.-.-++.|+++.....-....+ .....|..+..++--.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888887777442 3445666555555666666665555444433 23456777777777788888888
Q ss_pred HHHHHhHhcCCCCCChhhHHHHHH------HhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 175 DVFRRMRQGCNLMPDEGTVVSTLS------ACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 175 ~~~~~m~~~~~~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
.+++...+...-.|+...+..... .....|.++.+.+.+......+......-..-.+.+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 888887763333455554433222 23445566666655555444444444444555666777777777777777
Q ss_pred cCCC
Q 007077 249 EMPN 252 (619)
Q Consensus 249 ~~~~ 252 (619)
.+..
T Consensus 244 ~Ll~ 247 (700)
T KOG1156|consen 244 RLLE 247 (700)
T ss_pred HHHh
Confidence 7665
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=99.85 Aligned_cols=202 Identities=16% Similarity=0.150 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+....+.. +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------- 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN----------- 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-----------
Confidence 3456666666777777777777777665432 1223344444444555555555555555444432 22
Q ss_pred HHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 007077 366 YAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 444 (619)
+...+..+...+...|++++|.+.+++.......|. ...+..+...+...|++++|...
T Consensus 98 --------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 98 --------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred --------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 233444445555555555666665555554321222 23444455556666666666666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
++..... .+.+...+..+...+...|++++|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 6666542 1223445666666666667777776666665432 22233345555566666677777766666655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=81.34 Aligned_cols=50 Identities=34% Similarity=0.717 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007077 284 RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ 333 (619)
Q Consensus 284 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 333 (619)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-07 Score=85.19 Aligned_cols=445 Identities=12% Similarity=0.065 Sum_probs=235.6
Q ss_pred HHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh
Q 007077 60 IKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI 139 (619)
Q Consensus 60 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 139 (619)
+.-+..+.++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44555666777777776654433221111111122233345666666666666655522 23444444444444445556
Q ss_pred hHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 007077 140 CNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE 219 (619)
Q Consensus 140 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (619)
.+|..+-...++ ++..-..|...-.+-++-++-. .+++.+...
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~------------------------------------~fh~~LqD~ 150 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRIL------------------------------------TFHSSLQDT 150 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHH------------------------------------HHHHHHhhh
Confidence 666555544332 1222222333333334433333 333333221
Q ss_pred ccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCchhHHH-HHHHHHhcCCHHHHHHHHcc---CCCCChhhHHHHH
Q 007077 220 LEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNVICWTS-MVSGYVNCGQLEKARDLFDR---SPVRDIVLWTAMI 293 (619)
Q Consensus 220 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li 293 (619)
. .-.-+|..+....-.+.+|++++.++.. |+....|. +.-+|.+..-++-+.++++. -.+.++..-|...
T Consensus 151 ~----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 151 L----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred H----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 1 1112333333333456667777766654 33333332 33445555555555554432 2233455555555
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ-----LGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
....+.=.-..|.+-.+++.+.+-+. |- .+.-+++ -.+-+.|.+++--+.+. .|. .--.|+-.|.+
T Consensus 227 cn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~ 297 (557)
T KOG3785|consen 227 CNLFRLINGRTAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLN 297 (557)
T ss_pred HHHhhhhccchhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecc
Confidence 55555433334444445544433211 10 1111111 12345566665544432 222 22346667899
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHH
Q 007077 369 CGLIEKALEIFYELREKDAASWTSIICGLAMNGK-------INKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDE 440 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 440 (619)
.+++.+|..+.+.+....+.-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.. ---++.+.+.-..++++
T Consensus 298 q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 298 QNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred cccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999998876665555444444444443 344555665544444443332 22334444555567899
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHH-HHHHHHcCCHHHHHHHHHHH
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGAL-LSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~ 519 (619)
.+.++..+..- -...|...+ .+..+++..|++.+|+++|-++.. +...+..+|.++ ..+|.+.++++.|..++
T Consensus 378 Vl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~--- 451 (557)
T KOG3785|consen 378 VLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMM--- 451 (557)
T ss_pred HHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHH---
Confidence 99998888653 344444444 478899999999999999988874 343444456555 45677888888877665
Q ss_pred hccC-CCCc-chHHHHHHHHHhCCChHHHHHHHHHHHhCCCccc
Q 007077 520 EKIE-SKDS-SFHTLLANIYASANRWEDVTNVRQKMKEMGVRKV 561 (619)
Q Consensus 520 ~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 561 (619)
.+.+ |.+. .....+++-+.+.+.+=-|.+.|..+....+.|.
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 3333 3322 2345667788888888888888888876554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-10 Score=114.80 Aligned_cols=213 Identities=15% Similarity=0.003 Sum_probs=166.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCC
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYA---------KCGLIEKALEIFYELREK---DAASWTSIICGLAMNGK 402 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 402 (619)
++.++|...+++..+.. |.+...+..+..+|. ..+++++|...++++.+. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999998864 445566666665554 234589999999987743 67788888899999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 007077 403 INKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-EHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 403 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
+++|...|++.++. .|+ ...+..+...+...|++++|...+++..+. .|+. ..+..++..+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999988 666 457778888999999999999999999864 4553 2333445556778999999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+++......+.....+..+..++...|++++|...++++....|.+......++..|...| ++|...++++.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9987643222233346777788889999999999999998888888888888888888888 488888888765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-07 Score=87.28 Aligned_cols=268 Identities=10% Similarity=-0.040 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCCChh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007077 254 NVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV---LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTG 330 (619)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 330 (619)
|+.....+...+...|+.++|...|++...-|+. ........+.+.|+.++...+...+.... .-....+-.-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 3334444444444445555554455443322222 22222333445566666555555543321 1111112222222
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC--C-CChhhHHHHHHHHHhCCChHHHH
Q 007077 331 CAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR--E-KDAASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~ 407 (619)
....++++.|..+-++.++.. +.+...+-.-...+...|+.++|.-.|+... . -+...|..|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 334455666666666555543 2333444444456677788888888887655 3 36788888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 408 ELFSQMISGGAKPDDITFIGVL-SACS-HGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 408 ~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
.+-...... +..+..++..+. ..|. ....-++|.+++++.. .+.|+ ....+.+...+...|..++++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 877776554 123344544442 3332 3344578899988866 45677 567778888999999999999999987
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.. +.++....+.|.+.+...+.+.+|...|..+..++|++..+
T Consensus 465 L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 465 LI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred Hh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 73 44455558899999999999999999999999999998763
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=101.60 Aligned_cols=188 Identities=14% Similarity=0.098 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSH 434 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 434 (619)
+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|++.++. .|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444445555555555555554432 23445555555555555555555555555544 443 2344445555555
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
.|++++|.+.|+...+. .|+..........+...+++++|.+.|++.....+++. |.. .......|+..++ .
T Consensus 145 ~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~---~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ---WGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc---cHH-HHHHHHccCCCHH-H
Confidence 55555555555555532 23221111111122334455555555544331111111 211 1112223333222 1
Q ss_pred HHHHHh-------ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 515 LAALLE-------KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 515 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.++.+. ++.|+.+.+|..++.+|...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 222221 333444445566666666666666666666655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-10 Score=97.84 Aligned_cols=193 Identities=9% Similarity=0.032 Sum_probs=161.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccC
Q 007077 360 TALIEMYAKCGLIEKALEIFYELR--EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIG-VLSACSHGG 436 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g 436 (619)
+.+..+|.+.|.+.+|.+.|+... .+.+.||..|-..|.+..++..|+.++.+-++. .|-.+||.. ..+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 567888999999999999998765 357889999999999999999999999998887 788887654 457778889
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLA 516 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (619)
+.++|.++++...+. .+.+++...++...|.-.++++-|+.+++++..- ...++..|+.+.-+|.-.++++.++..|
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999998874 3456777888888899999999999999998844 3445667999999999999999999999
Q ss_pred HHHhccCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 517 ALLEKIES--K-DSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 517 ~~~~~~~p--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+++..... + -..+|..++.+....|++.-|.+-|+-....+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99976543 2 34568899999999999999999998876543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-09 Score=91.18 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=132.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLID 466 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 466 (619)
+...|.-+|.+.|++..|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+. .|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhH
Confidence 3455677888888888898888888887 6765 47888888888889999999888888753 444 667888888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
.+|..|++++|...|++....|.-+ ...+|..+..+..+.|+.+.|+..+++.++.+|+.+.....++....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888999999999998887555433 234588888778888999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 007077 546 VTNVRQKMKEMGV 558 (619)
Q Consensus 546 A~~~~~~m~~~~~ 558 (619)
|..++++....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9988888876554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-07 Score=92.26 Aligned_cols=431 Identities=12% Similarity=0.069 Sum_probs=217.4
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--CCeecH-HHHHHHHHcC-----
Q 007077 96 KAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--KDVVSW-NVSISGHVKC----- 167 (619)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~----- 167 (619)
..+...|++++|.+.++.-.+. +.............+.+.|+.++|..++..+.+ |+-..| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 4455667777777777654332 222334555666777777777777777777765 333333 3333333111
Q ss_pred CChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCChhHHHHHHHHHHhcCChhhHHH
Q 007077 168 MRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFTPIMGNALLDMYCKCGCLSEARE 245 (619)
Q Consensus 168 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 245 (619)
.+.+....+|+.+.. .-|.......+.-.+.. | +.-...+...+.. ...-|.+++.|-..|......+-..+
T Consensus 91 ~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~-g--~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAE---KYPRSDAPRRLPLDFLE-G--DEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHH---hCccccchhHhhcccCC-H--HHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 245556666666644 11333222222111111 1 1111111111111 22233444555555543333332222
Q ss_pred HhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-H
Q 007077 246 LFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDI--VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK-F 322 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 322 (619)
++..... .+...+.+.... -.....|.. .++.-+...|...|++++|++++++.++. .|+. .
T Consensus 165 l~~~~~~-----------~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 165 LVEEYVN-----------SLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHHHHHH-----------hhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 2222110 000000000000 000112233 34455677788888888888888888774 5653 4
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh----------hhH--
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA----------ASW-- 390 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~-- 390 (619)
.|..-...+-+.|++.+|.+.++...+.. ..|..+-+-.+..+.++|++++|.+++......+. ..|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 67777788888888888888888888775 45677777778888888888888888887765531 123
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC--CC---CCCHH----------HHHHHHHHHhcc---C----cHHHHHHHHHHh
Q 007077 391 TSIICGLAMNGKINKALELFSQMISG--GA---KPDDI----------TFIGVLSACSHG---G----LVDEGRRFFNTM 448 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~--g~---~p~~~----------~~~~ll~~~~~~---g----~~~~a~~~~~~~ 448 (619)
.....+|.+.|++..|+..|....+. .+ +-|-. +|..+++..-+. . -...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 23456788888888887776665432 11 22222 222222221111 0 112333444333
Q ss_pred HHhcCCCCCh-----------hHHHHHHHHH---HhcCCHHHHHHHHhh-----------C-CCCCCcccHHHHHHHHHH
Q 007077 449 TEVYQIQPKL-----------EHYGCLIDLL---GRAGLLDEAEELIRK-----------I-PNENNEIIVPLYGALLSA 502 (619)
Q Consensus 449 ~~~~~~~p~~-----------~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~-~~~~~~~~~~~~~~l~~~ 502 (619)
.......... .--..+..-. .+...-+++...-.+ . ...+...+. .-+...
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~Gek 465 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEK 465 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHH
Confidence 3221000000 0000000000 111111111111100 0 001111110 011111
Q ss_pred HHH-cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 503 CRI-YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 503 ~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+.+ ..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 223 33478899999999999999999999999999999999999887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-08 Score=95.25 Aligned_cols=231 Identities=13% Similarity=0.025 Sum_probs=156.1
Q ss_pred CChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 300 NRFDEAVALFREMQIIR-LKPD--KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 300 g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
+..+.++..+.++.... ..|+ ...|......+...|+.+.|...|....+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777766432 2232 2346666667788888888888888888765 556788899999999999999999
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007077 377 EIFYELRE--K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQ 453 (619)
Q Consensus 377 ~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 453 (619)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998764 2 5678888888999999999999999999887 66543222222234456789999999977654 3
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-ch
Q 007077 454 IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN---NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS-SF 529 (619)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~ 529 (619)
.+|+...+ .++..+......+++.+.+.+..... .+....+|..+...+...|++++|+..|+++.+.+|.+. ..
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred CCccccHH-HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34443222 33333332222233343333222111 122345689999999999999999999999999997544 33
Q ss_pred HHHHHHH
Q 007077 530 HTLLANI 536 (619)
Q Consensus 530 ~~~l~~~ 536 (619)
...++..
T Consensus 274 ~~~~~e~ 280 (296)
T PRK11189 274 RYALLEL 280 (296)
T ss_pred HHHHHHH
Confidence 3344443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-07 Score=91.77 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=70.6
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhCC
Q 007077 324 LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK--DAASWTSIICGLAMNG 401 (619)
Q Consensus 324 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g 401 (619)
|..+...|+..|+++.|.++|-+. ..++--|.+|.+.|+|+.|.++-++...| .+..|-+-..-+-.+|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence 334444445555555554444321 12333444555555555555554444433 2233333334444455
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
++.+|.++|-... .|+. .+..|-+.|..+..+++.++- .|+ ..+-..+..-|...|++..|.+
T Consensus 839 kf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 839 KFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred chhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHH
Confidence 5555544443221 2332 233444445444444443322 122 2233344455555566666555
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
-|-+.. + |.+-+..|...+-+++|-++
T Consensus 904 ~flea~------d---~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 904 HFLEAG------D---FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHhhh------h---HHHHHHHhhhhhhHHHHHHH
Confidence 554433 1 55555555555555555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-08 Score=98.41 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCCcc
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVY-----QIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP------NENNEI 491 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~ 491 (619)
++..+...|...|++++|.+++++++... +..+. ...++.|...|.+.+.+.+|.++|.+.. ....+.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 44444445555555555555554443321 11111 2345556666666666666666665432 233444
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+|..|...|...|+++.|+++.+.+.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55578889999999999999999887774
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-07 Score=92.30 Aligned_cols=436 Identities=14% Similarity=0.054 Sum_probs=231.8
Q ss_pred CCCChhHHHHHHHHhccCCCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCC-cccH
Q 007077 16 LQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQS---PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPD-NFTY 91 (619)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~ 91 (619)
++.|+.+|..|.-+.. ++|+++.+-+.|++.-+ .....|+.+-..+...|.-..|..+++.-......|+ ...+
T Consensus 319 ~qnd~ai~d~Lt~al~--~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS--RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 4578888888888887 88899888888886543 3445688888888888888888888887654432233 3334
Q ss_pred HHHHHHHh-ccCChhHHHHHHHHHHHh--CC--CCChhhHHHHHHHhHhcC-----------ChhHHHHHHccCCCC---
Q 007077 92 PFVFKAVG-WLGEVKKGEKVHGYVVKT--GL--EFDTYVCNSIMDMYGVLG-----------KICNVKKLFDEMPDK--- 152 (619)
Q Consensus 92 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~--- 152 (619)
-..-+.|. +.+.++++..+-.++... +. ......|..+.-+|...- ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444 456677777766666652 11 122334444444443211 122334444443221
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
|+...-.+.--|+..++.+.|.+..++... .+-.-+...|..+.-.+...+++..|..+.+......+.|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~-l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALA-LNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 111111122223444555555555555544 3333344455555555555555555555555555444443333333333
Q ss_pred HHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREM 312 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 312 (619)
.-...++.++|......+. . +|+... .....++-...++....+
T Consensus 556 i~~~~~~~e~~l~t~~~~L-----------~-------------~we~~~------------~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKL-----------A-------------LWEAEY------------GVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred hhhhcccHHHHHHHHHHHH-----------H-------------HHHhhh------------hHhhhhhhhhhhhhhccc
Confidence 3333444444433222211 1 011000 000111111111111111
Q ss_pred HHcCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC----
Q 007077 313 QIIRLKP--DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD---- 386 (619)
Q Consensus 313 ~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 386 (619)
.-.--.| ...++..+..-... +. ...+ .+..+..+.....++
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~--~~----------~~~~--------------------se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVAS--QL----------KSAG--------------------SELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred ccCcccccccchhhHHHHHHHHh--hh----------hhcc--------------------cccccCcccccCCCCchHH
Confidence 1000001 00111111111000 00 0000 000001111111111
Q ss_pred --hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 007077 387 --AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYG 462 (619)
Q Consensus 387 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 462 (619)
...|......+.+.++.++|...+.+.... .|- ...|......+...|.+++|.+.|.... -+.|+ +....
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~ 722 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHH
Confidence 234566667777888888888777777654 343 3355555566677888888888887766 44565 66778
Q ss_pred HHHHHHHhcCCHHHHHH--HHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 463 CLIDLLGRAGLLDEAEE--LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
++..++.+.|+..-|.. ++..+. +-++.+...|-.+...+.+.|+.+.|-..|.-+.++++.+|.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dal-r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDAL-RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 88888988887777777 888877 446777778999999999999999999999999888877764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-07 Score=84.96 Aligned_cols=301 Identities=15% Similarity=0.072 Sum_probs=156.1
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHH---HHHHhcCCHHHHHHHHccCCCCChhhHHH---HHHHHHHcCC
Q 007077 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMV---SGYVNCGQLEKARDLFDRSPVRDIVLWTA---MINGYVQFNR 301 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~ 301 (619)
--+...+...|++..|+..|....+.|...|.++. ..|...|+-..|+.-+++....-+..+.+ ....+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 45566666677777777777776665555554443 34555555555555555544222222222 2234556666
Q ss_pred hhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 007077 302 FDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIF 379 (619)
Q Consensus 302 ~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 379 (619)
+++|..-|+...+.....+. ..+..+. ..++ .......+..+...|+...|++..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~-------~~~e----------------~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLA-------LIQE----------------HWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHH-------hHHH----------------HHHHHHHHHHHhcCCchhhHHHHH
Confidence 66666666666554321110 0000000 0000 001111222333445555555555
Q ss_pred HhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007077 380 YELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP 456 (619)
Q Consensus 380 ~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 456 (619)
..+.+. |...+..-..+|...|.+..|+.-++...+.. .-+..++..+-..+...|+.+.++...++.. .+.|
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---Kldp 254 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDP 254 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCc
Confidence 544432 44444445555555555555555544443331 1122344444444455555555544444333 3344
Q ss_pred ChhH----HHHH---------HHHHHhcCCHHHHHHHHhhCCC-CCC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 457 KLEH----YGCL---------IDLLGRAGLLDEAEELIRKIPN-ENN--EIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 457 ~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
|... |-.+ +....+.++|.++++-.++... +|. +.....+..+-.++...|++.+|++...+++
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 4221 1110 1123355667777666665442 222 1121224444555667788888888888888
Q ss_pred ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 521 KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 521 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+++|+|..++.--+.+|.-...+++|+.-+++..+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-07 Score=82.26 Aligned_cols=385 Identities=12% Similarity=0.027 Sum_probs=206.4
Q ss_pred hHHHHHHHhHhcCChhHHHHHHccCCCC---CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhh
Q 007077 125 VCNSIMDMYGVLGKICNVKKLFDEMPDK---DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACT 201 (619)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 201 (619)
-+++++..+.+..++..|++++..-.++ +....+.+..+|....++..|-+.|+++.. ..|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrl------ 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRL------ 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHH------
Confidence 3455555566667777777776655443 334556666677777777777777777633 3344333321
Q ss_pred cCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC-CchhHHHHH--HHHHhcCCHHHHHHHH
Q 007077 202 ALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK-NVICWTSMV--SGYVNCGQLEKARDLF 278 (619)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li--~~~~~~g~~~~A~~~~ 278 (619)
--...+.+.+.+..|+++...|.+. +...-..-+ ......+++..+..+.
T Consensus 83 ---------------------------Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 83 ---------------------------YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred ---------------------------HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 1122333445555566655555542 111111111 1122455666666666
Q ss_pred ccCCC-CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh-
Q 007077 279 DRSPV-RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDA- 356 (619)
Q Consensus 279 ~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 356 (619)
++.+. .+..+.+.......+.|+++.|++-|+...+-+--.....|+..+ +..+.++...|.....+++++|+...+
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 66653 344444444445556677777777777665543222334454444 334556677777777766666543221
Q ss_pred --------------------hHHHHHH-------HHHHhCCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhCCChH
Q 007077 357 --------------------VVATALI-------EMYAKCGLIEKALEIFYELREK-----DAASWTSIICGLAMNGKIN 404 (619)
Q Consensus 357 --------------------~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 404 (619)
..-+.++ ..+.+.|+++.|.+.+-.|+.+ |++|...+.-.= ..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcc
Confidence 1112333 3456889999999999999854 778777664332 345566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHhh
Q 007077 405 KALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG-RAGLLDEAEELIRK 483 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 483 (619)
+..+-+.-+.+... -...||..++-.||+..-++.|-.++-+-....-.-.+...|+ +++++. -.-..++|.+-++.
T Consensus 294 ~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred ccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHH
Confidence 66666666665532 2356999999999999988888887754221100001222333 344443 34467777666554
Q ss_pred CCCCCCcccHHHHHHHHHHH-HHcCCHHHH----HHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 484 IPNENNEIIVPLYGALLSAC-RIYGNVDMG----EKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 484 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+... .... .-..-+..- .++.+-+++ .+-++...++- -.....-++.|.+..++.-+.+.|+.-.+
T Consensus 372 La~~-l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 372 LAGM-LTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHH-HHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 4311 0000 011111111 112221122 22233333221 11245667888999999999999988764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-06 Score=84.16 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=31.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
.+.|+.++|..+++++.+ -.++|..+...++.+|++. +++.|..+-..+.
T Consensus 469 lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 345777777777777765 2356666666777766653 4666666666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.8e-06 Score=83.24 Aligned_cols=239 Identities=12% Similarity=0.074 Sum_probs=119.2
Q ss_pred CChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHC-C--------CCCCc
Q 007077 18 QNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRER-G--------VSPDN 88 (619)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~p~~ 88 (619)
-|+.+-..++....+..-|+.+.|.+-.+.++... .|..|.+.|.+..+.+-|.--+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~--vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDS--VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhH--HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666665544447788888877777776653 3666777777766666555444443321 1 1122
Q ss_pred ccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC-CeecHHHHHHHHHcC
Q 007077 89 FTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK-DVVSWNVSISGHVKC 167 (619)
Q Consensus 89 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 167 (619)
.+=.-+.-.....|.+++|+.++.+..+ |..|-..|-..|.+++|.++-+.-..- =..||.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 1111222223456777777777777665 233445566667777776665532211 112444444444455
Q ss_pred CChhHHHHHHHHh----------HhcC--------CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHH
Q 007077 168 MRFEDAVDVFRRM----------RQGC--------NLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNA 229 (619)
Q Consensus 168 g~~~~A~~~~~~m----------~~~~--------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 229 (619)
++.+.|++.|++- .... .-..|...|.-.....-..|+.+.|..++..+.. |-+
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs 943 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFS 943 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhh
Confidence 5666666555542 1100 0012333333333444556777777776665544 233
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 007077 230 LLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 230 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 278 (619)
+++..|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444444444443321 22233333444444444444444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-07 Score=88.18 Aligned_cols=217 Identities=11% Similarity=0.030 Sum_probs=135.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCh----------hhHHHHH
Q 007077 325 VALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDA----------ASWTSII 394 (619)
Q Consensus 325 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~l~ 394 (619)
..+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+......-+...+... ..+..+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555556666666666555543 3444445555566666665555554444333211 1122234
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCC
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGL 473 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 473 (619)
.+|.+.++++.|+..|++.+.....|+..+ +....+++....+... -+.|... -...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888665544443321 2223344444433322 2234421 11222556778888
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+..|+..+.+++.. +|.+...|..-.-+|.+.|.+..|+.-.+...+++|+....|..=+.++....+|++|.+.+.+.
T Consensus 374 y~~Av~~YteAIkr-~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKR-DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887743 56677778888888888888888888888888888888888888888888888888888888877
Q ss_pred HhC
Q 007077 554 KEM 556 (619)
Q Consensus 554 ~~~ 556 (619)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-06 Score=85.43 Aligned_cols=368 Identities=14% Similarity=0.127 Sum_probs=227.7
Q ss_pred HhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 007077 132 MYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKE 211 (619)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 211 (619)
.+...|+++.|..-|-+.. ..-..|.+......|.+|+.+++.++. .+.....|..+..-|+..|+++.|.+
T Consensus 715 hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqd---qk~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQD---QKTASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhh---hccccccchHHHHHhccchhHHHHHH
Confidence 3445566666666554321 223345566778899999999998865 23345577888888999999999999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCC--chhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhH
Q 007077 212 IHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKN--VICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLW 289 (619)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 289 (619)
+|... ..++..+.+|.+.|+++.|.++-.+...|. ...|-+-..-+-+.|++.+|+.++-.+..|+.
T Consensus 787 lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~--- 855 (1636)
T KOG3616|consen 787 LFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK--- 855 (1636)
T ss_pred HHHhc--------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH---
Confidence 98653 345778999999999999999988877653 34566666667789999999999988888875
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007077 290 TAMINGYVQFNRFDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYA 367 (619)
Q Consensus 290 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (619)
.|..|-+.|..+..+++..+- .|+. .|...+..-+...|++..|...|-+.- -|.+-+++|.
T Consensus 856 --aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk 919 (1636)
T KOG3616|consen 856 --AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYK 919 (1636)
T ss_pred --HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhh
Confidence 467889999999998888754 2332 355666777788899999887765433 3567788898
Q ss_pred hCCCHHHHHHHHHhcCCCCh-----hhHH-------------------HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 368 KCGLIEKALEIFYELREKDA-----ASWT-------------------SIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~~~-----~~~~-------------------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
..+-|++|.++-+.--..|. ..|. .-+.--+..+.++-|..+-+-..+.. .|..
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v- 997 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV- 997 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc-
Confidence 89999998888765332221 1111 11122234444555555444333321 2221
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH-------------------HHHHHHhcCCHHHHHHHHhhC
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC-------------------LIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~ 484 (619)
...+..-+...|++++|-+.+-+.++.+ .-..+|.. -+.++.+..+++.|.++-+.-
T Consensus 998 -hlk~a~~ledegk~edaskhyveaikln---tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h 1073 (1636)
T KOG3616|consen 998 -HLKLAMFLEDEGKFEDASKHYVEAIKLN---TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH 1073 (1636)
T ss_pred -hhHHhhhhhhccchhhhhHhhHHHhhcc---cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh
Confidence 2223334556788888877766655421 11112221 123344444444444443322
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
. +...++ .+..-..+....|++.+|+.++-++ ..|+ ...+-|...+.|.+|+++.+
T Consensus 1074 ~-~~~l~d--v~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1074 C-EDLLAD--VLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred C-hhhhHH--HHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHH
Confidence 2 111111 2444445555667777777665322 1222 23344667778888777654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-07 Score=95.72 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=109.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-------------CCCCChh--HHHHHHHHHHh
Q 007077 406 ALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY-------------QIQPKLE--HYGCLIDLLGR 470 (619)
Q Consensus 406 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~~ 470 (619)
+...+..+...|+++ +|..+-..|......+-...++....... .-+|... ++..+...|-.
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 445556666677543 34444444554444444445554443321 1134433 34566788889
Q ss_pred cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 471 AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
.|++++|++++++... ..|..+..|..-...+.+.|++.+|.+.++.+..+++.|..+..-.+..+.+.|+.++|.+.+
T Consensus 207 ~g~~~~Al~~Id~aI~-htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIE-HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred hCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998883 355566778999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhCCC
Q 007077 551 QKMKEMGV 558 (619)
Q Consensus 551 ~~m~~~~~ 558 (619)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98876654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-05 Score=79.77 Aligned_cols=504 Identities=14% Similarity=0.128 Sum_probs=293.3
Q ss_pred HHHHHHHhccCCCCChhHHHHhhccCCC--CCc-----ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHH
Q 007077 23 LNKLMVFCTHPSHGNLLYAEKIFGSIQS--PCL-----LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVF 95 (619)
Q Consensus 23 ~~~l~~~~~~~~~g~~~~a~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 95 (619)
...+.+.|. +.|-+..|++.+..+.. +.+ ..=..++. |.-.-.++.+++.++.|...+++.|..+...+.
T Consensus 609 ra~IAqLCE--KAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCE--KAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHH--hcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 556667777 88888888888876641 111 11112333 333346788888889998888888877776666
Q ss_pred HHHhccCChhHHHHHHHHHHHh-----------CCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC-------------
Q 007077 96 KAVGWLGEVKKGEKVHGYVVKT-----------GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD------------- 151 (619)
Q Consensus 96 ~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 151 (619)
.-|+..=..+...++|+..... ++.-|+.+.-..|.+-|+.|++.+..++.++-.-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 6666555555566666655431 2456677777889999999999988888765420
Q ss_pred ------C------------CeecH------HHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHH------------
Q 007077 152 ------K------------DVVSW------NVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVS------------ 195 (619)
Q Consensus 152 ------~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~------------ 195 (619)
| |.+.| -..|..|.+.=++...-.+...+.. +..+......
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHHHHhccCChH
Confidence 1 11111 1123344443333333333333211 1222222222
Q ss_pred -HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhH-HH---HhccC------CCCCc---------
Q 007077 196 -TLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEA-RE---LFDEM------PNKNV--------- 255 (619)
Q Consensus 196 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~---~~~~~------~~~~~--------- 255 (619)
+..-+-+.+++..-..+++..++....++.++|+|...|...++-.+- ++ .|+.. .++|.
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 222233444555555566666666677888889988888765543221 11 01100 00110
Q ss_pred --------------hhHHHHHHHHHhcCCHHHHHHHHcc-----------C-----C-CCChhhHHHHHHHHHHcCChhH
Q 007077 256 --------------ICWTSMVSGYVNCGQLEKARDLFDR-----------S-----P-VRDIVLWTAMINGYVQFNRFDE 304 (619)
Q Consensus 256 --------------~~~~~li~~~~~~g~~~~A~~~~~~-----------~-----~-~~~~~~~~~li~~~~~~g~~~~ 304 (619)
..|....+.+.+..+.+-=.+++.+ . + ..|+..-+.-+.++...+-+.+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 1122333333344443332222211 0 0 2255555666777888888888
Q ss_pred HHHHHHHHHHcCCCC-CHHHH-HHHHHHHHccCcHHHHHHHHHHHHHcC-----------------------CCCChhHH
Q 007077 305 AVALFREMQIIRLKP-DKFIL-VALLTGCAQLGALEQGKWIHGYINENR-----------------------ITVDAVVA 359 (619)
Q Consensus 305 A~~~~~~m~~~g~~p-~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~ 359 (619)
-++++++..-.+-.- ..... +.++-... ..+.....++..++-.-. +..+....
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 888888775322110 11111 11221111 112222222222221111 01111222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 360 TALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
+.|+. .-+.++.|.++-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|..+++.+.+.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 22221 1233344444433332 4568999999999999999999887542 35678999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+-..++...+++ .-.|.+. +.|+-+|++.+++.+-++++. .|+..+ ...+.+-|...|.++.|.-+|.-.
T Consensus 1151 dLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~---i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVAN---IQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchh---HHHHhHHHhhhhhhHHHHHHHHHh
Confidence 999999888776 5566654 568999999999998777653 334444 788899999999999998888644
Q ss_pred hccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccC
Q 007077 520 EKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 520 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 562 (619)
.-|..|+..+...|.+..|...-++......|+..
T Consensus 1221 --------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1221 --------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 34788888899999999998888887776666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-06 Score=90.23 Aligned_cols=539 Identities=12% Similarity=0.046 Sum_probs=275.9
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHhccCCCCChhHHHHhhcc---CCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHH
Q 007077 6 QIQAQIFQIGLQQN-PETLNKLMVFCTHPSHGNLLYAEKIFGS---IQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE 81 (619)
Q Consensus 6 ~~~~~~~~~g~~~~-~~~~~~l~~~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 81 (619)
.+|..+....+.++ ...|..|-..|. ...+...|.+.|+. +.+.+..++....+.|.+..+++.|..+.-.--+
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYr--d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYR--DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 44444444444444 356677777776 55577778888874 4567778888999999999999999888333222
Q ss_pred CCCCCCc--ccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHH-
Q 007077 82 RGVSPDN--FTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWN- 158 (619)
Q Consensus 82 ~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 158 (619)
.. +.-. ..|...--.+...++...+..-|+...+..+ .|...|..+..+|.++|++..|.++|.+...-++..+-
T Consensus 555 ka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 555 KA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 11 1011 1233333345577788888888888877443 46678889999999999999999999877654433222
Q ss_pred H--HHHHHHcCCChhHHHHHHHHhHhc-----CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHH-------h-ccCC
Q 007077 159 V--SISGHVKCMRFEDAVDVFRRMRQG-----CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQ-------E-LEFT 223 (619)
Q Consensus 159 ~--li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~-~~~~ 223 (619)
. ....-+..|.+++|++.+...... .+..--..++..+...+...|-...+..+++..++ . ...+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 1 123345678899998888776431 11111122333333333333333333333332222 1 1222
Q ss_pred hhHHHHHHHHH-------------------Hh----cCCh---h---hHHHHhccCCC--CCchhHHHHHHHHHh----c
Q 007077 224 PIMGNALLDMY-------------------CK----CGCL---S---EARELFDEMPN--KNVICWTSMVSGYVN----C 268 (619)
Q Consensus 224 ~~~~~~l~~~~-------------------~~----~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~----~ 268 (619)
...+-.+.+++ .+ .+.. | -+.+.+-.-.+ .+..+|..++..|.+ .
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 22222111111 11 0000 0 00000000000 123344444433332 1
Q ss_pred ----CCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHH
Q 007077 269 ----GQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGK 341 (619)
Q Consensus 269 ----g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 341 (619)
.+...|...+.+.. ..+...||.|.-. ...|.+.-|...|-+-.... +-+..+|..+...+.+..+++.|.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhh
Confidence 11223444443322 3344555555443 33455555555554433321 223335555555556666666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC-----C---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 342 WIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR-----E---KDAASWTSIICGLAMNGKINKALELFSQM 413 (619)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 413 (619)
..+....... |.+...|-.........|+.-++..+|..-. + ++..-|-+.......+|+.++-+...+++
T Consensus 871 ~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 6666665543 3344444444444445555555555554311 1 12233333333344555554444333332
Q ss_pred HHC--------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH----HHHHHHhcCCHHHHHHH
Q 007077 414 ISG--------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC----LIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 414 ~~~--------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~ 480 (619)
... +-.|+ .+.|........+.+.+..|.....+.+.--...-+...|+. +...+...|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 211 11333 456666666666667666666665554432222334444442 34455566777777766
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS---FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.....+.+... ..+-+. ..-.++++++.+.|+++..+..++.. ....++.+...++..+.|...+-+...
T Consensus 1030 ~~~~~~evdEdi---~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDI---RGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hcccchhHHHHH---hhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 655443222222 222222 24567888889999888776655443 344556666677778888777766654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.9e-07 Score=89.24 Aligned_cols=237 Identities=17% Similarity=0.172 Sum_probs=154.5
Q ss_pred CChhhHHHHHH--HhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCC--------CCCh
Q 007077 121 FDTYVCNSIMD--MYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNL--------MPDE 190 (619)
Q Consensus 121 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~p~~ 190 (619)
-|..|-..+++ .|...|++|.|.+-.+-+. +-..|..|.+.+.+.++.+-|.-.+..|....|. .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666664 4677888888877766554 4467888888888888888888887777553332 122
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC-CCchhHHHHHHHHHhcC
Q 007077 191 GTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN-KNVICWTSMVSGYVNCG 269 (619)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g 269 (619)
.+-.-+.-.....|.+++|..++....+ |..|-..|-..|.+++|.++-+.-.+ .=..||.....-+-..+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 2222222334577888999988888766 24455677888999999887654333 12236777777777888
Q ss_pred CHHHHHHHHccCCCC-----------------------ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 007077 270 QLEKARDLFDRSPVR-----------------------DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVA 326 (619)
Q Consensus 270 ~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 326 (619)
+.+.|++.|++...+ |...|......+-..|+.+.|+.+|....+ |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 899998888765422 334444445555556667777776665543 344
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 007077 327 LLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELR 383 (619)
Q Consensus 327 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 383 (619)
+++..|-.|+.++|.++-++ ..|......|...|...|++.+|..+|-+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred heeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55556666777776666543 2345556667777777777777777776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-08 Score=91.24 Aligned_cols=229 Identities=13% Similarity=0.092 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT-VDAVVATALIEMY 366 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 366 (619)
....+.+++...|+++.++. +..... .|.......+...+....+.+.+..-+......... .+..+......++
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 33445566666776654432 222222 555544444444443334444444444333322222 2333333344567
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHHHHH
Q 007077 367 AKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS----HGGLVDEGR 442 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~ 442 (619)
...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ....+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHH
Confidence 7789999999888775 56777777888999999999999999999865 4443 4444554443 234688999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhc
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV-DMGEKLAALLEK 521 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 521 (619)
.+|+++.. ...+++.+.+.+..+....|++++|.+++.+... .++.+..++..++......|+. +.+.+.+.++..
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~-~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE-KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC-C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999876 4567888889999999999999999999988773 3555666777788888888887 778889999988
Q ss_pred cCCCCcc
Q 007077 522 IESKDSS 528 (619)
Q Consensus 522 ~~p~~~~ 528 (619)
..|+++.
T Consensus 265 ~~p~h~~ 271 (290)
T PF04733_consen 265 SNPNHPL 271 (290)
T ss_dssp HTTTSHH
T ss_pred hCCCChH
Confidence 8888775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-07 Score=78.65 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMIS 415 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 415 (619)
..|....-+|..|++++|...|++...
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 333333334444444444444444433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-06 Score=79.32 Aligned_cols=437 Identities=12% Similarity=-0.012 Sum_probs=247.0
Q ss_pred HHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh-hhHHHHHHHhHhcCCh
Q 007077 61 KAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDT-YVCNSIMDMYGVLGKI 139 (619)
Q Consensus 61 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~ 139 (619)
.+.+..|+++.|+..|.+.+... |+|.+-|..-..++++.|++++|.+=-...++ +.|+. ..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 45667889999999998887764 44777788888888888888888776655555 44654 3677777777778888
Q ss_pred hHHHHHHccCCCC---CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 007077 140 CNVKKLFDEMPDK---DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYI 216 (619)
Q Consensus 140 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (619)
++|...|.+-.+. |...++.+..++ ..+.+. +.. -.++..+..+..--... .-.....+..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~~----~~~p~~~~~l~~~p~t~--~~~~~~~~~~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQL----FTKPYFHEKLANLPLTN--YSLSDPAYVKI 151 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hhh----ccCcHHHHHhhcChhhh--hhhccHHHHHH
Confidence 8888888877653 334555555555 111111 111 00111111111000000 00000111111
Q ss_pred HHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHH-hcCCHHHHHHHHccCCCC-----------
Q 007077 217 NQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYV-NCGQLEKARDLFDRSPVR----------- 284 (619)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~----------- 284 (619)
.+.++.++... ..|..-.++..|.-.+.....+ ....--.... ...... .....+
T Consensus 152 l~~~~~~p~~l----~~~l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 152 LEIIQKNPTSL----KLYLNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPC------KQEHNGFPIIEDNTEER 218 (539)
T ss_pred HHHhhcCcHhh----hcccccHHHHHHHHHHhcCccc---cccccccccCCCCCCcc------cccCCCCCccchhHHHH
Confidence 11111111111 1111111111111111111000 0000000000 000000 000000
Q ss_pred ----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-----
Q 007077 285 ----DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD----- 355 (619)
Q Consensus 285 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 355 (619)
-..-...+.+...+..+++.|++.+....... -+..-++....++...|........-....+.|...-
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl 296 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL 296 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH
Confidence 01234456677777788888888888777643 3334455556667777776666555555544442110
Q ss_pred -hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 007077 356 -AVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACS 433 (619)
Q Consensus 356 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 433 (619)
......+..+|.+.++++.|...|.+....... -....+....++++...+...-. .|... -...-...+.
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAF 369 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHH
Confidence 011122344677788899999999885532111 11223334456666655554443 44432 2223356778
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
+.|++..|...|.+++.. .+.|...|..-.-+|.+.|.+..|++-.+.... -++.....|.--..++....+++.|.
T Consensus 370 k~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-L~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE-LDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred hccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999874 356688999999999999999999998777763 36666556666667777888999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhC
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYASA 540 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 540 (619)
+.|++..+.+|.+..+...+.+++...
T Consensus 447 eay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 447 EAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999988777777766653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-06 Score=86.65 Aligned_cols=441 Identities=12% Similarity=0.040 Sum_probs=261.2
Q ss_pred hhHHHHHHHHHHHhCCCCC-hhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHH
Q 007077 104 VKKGEKVHGYVVKTGLEFD-TYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRR 179 (619)
Q Consensus 104 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 179 (619)
...+...|-+..+ +.++ ...|..|...|+...+...|.+.|+..-+ .|..++......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4444444444333 3333 24678888888888888888888887665 3556778888888888888888888443
Q ss_pred hHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCch-hH
Q 007077 180 MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVI-CW 258 (619)
Q Consensus 180 m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 258 (619)
.-+......-...|...--.+...++...+..-++...+..|.|...+..++.+|..+|++..|.++|++...-++. .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 32211111111223333334567778888888888888878888888888888999999999898888777652222 22
Q ss_pred HHH--HHHHHhcCCHHHHHHHHccCCCC----------ChhhHHHHHHHHHHcCChhHHHHHHHH-------HHHcCCCC
Q 007077 259 TSM--VSGYVNCGQLEKARDLFDRSPVR----------DIVLWTAMINGYVQFNRFDEAVALFRE-------MQIIRLKP 319 (619)
Q Consensus 259 ~~l--i~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~g~~p 319 (619)
... .-..+..|.+.+|...+..+... -..++-.+...+...|-..+|.+.++. ........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 222 23345667777777766544311 111222222222222322222222222 21111111
Q ss_pred CHHHHHHHHHH-----------------------HHccCcH---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh--
Q 007077 320 DKFILVALLTG-----------------------CAQLGAL---E---QGKWIHGYINENRITVDAVVATALIEMYAK-- 368 (619)
Q Consensus 320 ~~~~~~~ll~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 368 (619)
+...+-.+-.+ ....+.. + -+.+.+-. ......+...|..|+..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHH
Confidence 11111111111 1111111 1 01111111 11112234445445444433
Q ss_pred --CC----CHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 007077 369 --CG----LIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLV 438 (619)
Q Consensus 369 --~g----~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 438 (619)
+| +...|...+.+.. ..+...|+.|.-. ...|++.-|.-.|-+-... .|. ..+|..+.-.|....++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccH
Confidence 22 2346677776654 3477888888766 6667777777777766655 444 45888888888899999
Q ss_pred HHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKI----PNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
+.|...|...+. +.|+ ...|-.........|+.-++..+|..- ..++..+....|.....--...|++++-+
T Consensus 867 E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 867 EHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred HHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 999999998874 4454 555655555566788888999888751 13445555444555444556667766655
Q ss_pred HHHH----------HHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 514 KLAA----------LLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 514 ~~~~----------~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...+ +..+..|+...+|.+.+..+.+.+.+.+|.+...+..
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5444 4467889999999999999999999999988877764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.7e-08 Score=89.22 Aligned_cols=246 Identities=12% Similarity=0.043 Sum_probs=165.2
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
-+.-.|++..++.-.+ .....-..+.....-+.+++...|+.+.+ ...+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445688888886665 22221122333555677888888887654 33443333 5666666555555544456677
Q ss_pred HHHHHHhcCC-C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007077 375 ALEIFYELRE-K----DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMT 449 (619)
Q Consensus 375 A~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 449 (619)
+..-+++... . +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777765542 2 2222222334566789999999988652 345666777889999999999999999997
Q ss_pred HhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 450 EVYQIQPKLEHYGCLIDLL----GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 450 ~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+ +..|. +...++.++ .-.+.+.+|..+|+++... .++++.+.+.+..++...|++++|+++++++.+.+|.
T Consensus 159 ~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 159 Q---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp C---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred h---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 4 44553 333344433 3334799999999998744 5567778999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCCh-HHHHHHHHHHHhC
Q 007077 526 DSSFHTLLANIYASANRW-EDVTNVRQKMKEM 556 (619)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 556 (619)
++.+...++-+....|+. +.+.+++.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999998 6678888888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.3e-08 Score=92.44 Aligned_cols=253 Identities=10% Similarity=0.035 Sum_probs=174.9
Q ss_pred HccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHH
Q 007077 332 AQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 332 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
.+.|++..|.-.|+..++.. |.+...|..|.......++-..|+..+.+..+- |....-.|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666665554 556666777777777777767777777666543 45566666677777777778888
Q ss_pred HHHHHHHCCCCCCHHHHHH--------HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 409 LFSQMISGGAKPDDITFIG--------VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 409 ~~~~m~~~g~~p~~~~~~~--------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
.++.-+... |.-..... .-..+..........++|-.+....+..+|..+...|.-.|--.|++++|++.
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 777765542 11100000 00122223334455666666655546567888999999999999999999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 007077 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRK 560 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 560 (619)
|+.+.. ..|.+..+||-|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.+-......-..
T Consensus 453 f~~AL~-v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 453 FEAALQ-VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHh-cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 999883 3566677799999999999999999999999999999999999999999999999999999988876532110
Q ss_pred cCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 561 VPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
.. ..+..++ ++.++..|......+.+.+
T Consensus 532 ~~---------------~~~~~~~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 532 RN---------------HNKAPMA-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred cc---------------cccCCcc-hHHHHHHHHHHHHHcCCch
Confidence 00 0001122 5778888876555555444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-06 Score=82.26 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC---------CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIES---------KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455666666666666665533211 12333456666777888888888887777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.4e-06 Score=73.87 Aligned_cols=316 Identities=13% Similarity=0.032 Sum_probs=204.2
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--CCchhH-HHHHHHHHh
Q 007077 191 GTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--KNVICW-TSMVSGYVN 267 (619)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~ 267 (619)
.-...+-..+...|++..|..-+...++..|.+-.++-.-...|...|+-..|+.-|.++.+ ||...- -.-...+.+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 33445556667777787777777777766565555666667789999999999988888876 554332 223466889
Q ss_pred cCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 007077 268 CGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYI 347 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 347 (619)
.|.+++|..-|+.+...++.- +....++.+ +...+++. .....+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999999998876443310 000111111 11111111 1222333445566777777777776
Q ss_pred HHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 007077 348 NENRITVDAVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT 424 (619)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 424 (619)
++.. +.+...+..-..+|...|++..|+.-++... ..+.....-+-..+-..|+.+.++...++.++. .||...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchhh
Confidence 6653 5667777777777777777777776665443 345566666666667777777777777777765 666431
Q ss_pred -H---HHH---H------HHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 425 -F---IGV---L------SACSHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 425 -~---~~l---l------~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
| -.+ . ......++|.++.+-.+...+. .|. ...+..+-.++...|++-+|++.-.++..
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 1 111 0 1123456777777777776643 344 23345566778888999999998888773
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
-++.++.++.--..+|.-...++.|+.-|+++.+.+|++..+-
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3555566677778888888899999999999999999887643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-07 Score=82.15 Aligned_cols=179 Identities=9% Similarity=-0.040 Sum_probs=116.5
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---Ch---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----H
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELREK---DA---ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI----T 424 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 424 (619)
....+..+...+...|++++|...|+++... +. .++..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 4455666677777778888888777766532 11 35566777777778888888888877765 33321 3
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHH
Q 007077 425 FIGVLSACSHG--------GLVDEGRRFFNTMTEVYQIQPKL-EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPL 495 (619)
Q Consensus 425 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 495 (619)
+..+..++... |+.+.|.+.++.+... .|+. ..+..+..... ..... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~--------------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL--------------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH--------------HHH
Confidence 44444444433 6677777777777654 2432 22221111100 00000 001
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
...+...+...|++++|...++++.+..|+++ .++..++.++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23556678899999999999999999887654 57889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00014 Score=70.39 Aligned_cols=426 Identities=14% Similarity=0.139 Sum_probs=234.8
Q ss_pred CCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHH
Q 007077 17 QQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPF 93 (619)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 93 (619)
|-|...|+.||+-+. ...++++++.++++. +.....|..-|..-.+..+++....+|.+.+..- .+...|..
T Consensus 17 P~di~sw~~lire~q---t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ---TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHc---cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 567899999999885 449999999999885 4466789999999999999999999999988753 35666666
Q ss_pred HHHHHhc-cCChhHH----HHHHHHH-HHhCCCCCh-hhHHHHHHHh---------HhcCChhHHHHHHccCCC-C----
Q 007077 94 VFKAVGW-LGEVKKG----EKVHGYV-VKTGLEFDT-YVCNSIMDMY---------GVLGKICNVKKLFDEMPD-K---- 152 (619)
Q Consensus 94 ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~~-~~~~~li~~~---------~~~g~~~~A~~~~~~~~~-~---- 152 (619)
-+.--.+ .+..... .+.|+.. .+.|+++-. ..|+..+..+ ....+++..+++++++.. |
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 6654432 2333222 2333333 345654433 3566665543 233467778888888763 2
Q ss_pred -----CeecHHHHHHHHH-------cCCChhHHHHHHHHhHh-cCCCC------CChhh---------HHHHHHHhhcCC
Q 007077 153 -----DVVSWNVSISGHV-------KCMRFEDAVDVFRRMRQ-GCNLM------PDEGT---------VVSTLSACTALK 204 (619)
Q Consensus 153 -----~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~-~~~~~------p~~~~---------~~~ll~~~~~~~ 204 (619)
|-..|..=|.... +...+-.|.++++++.. ..|.. |...| |..+|.--...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 2122222222111 23345566666666532 01222 11111 111111100000
Q ss_pred ------Ch--HHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCC------
Q 007077 205 ------NL--ELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQ------ 270 (619)
Q Consensus 205 ------~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~------ 270 (619)
.. ....-++++....+...+.+|- ++-..+... -+.+...|+
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy-------------~~s~yl~~~-----------s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWY-------------DYSMYLIEI-----------SDLLTEKGDVPDAKS 307 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHH-------------HHHHHHHHh-----------hHHHHHhcccccchh
Confidence 00 0011111221111111111111 111111110 011222222
Q ss_pred -HHHHHHHHccCCC----CChhhHHHHHHHHHH---cCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCcHHHHH
Q 007077 271 -LEKARDLFDRSPV----RDIVLWTAMINGYVQ---FNRFDEAVALFREMQIIR-LKPDKFILVALLTGCAQLGALEQGK 341 (619)
Q Consensus 271 -~~~A~~~~~~~~~----~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~ 341 (619)
-+++.+++++... .+...|..+...--. .+..+.....++++...- ..|+ .+|...++...+..-++.|+
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHH
Confidence 2333444443321 133333333322111 113555666666665432 2333 46777777777888888888
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007077 342 WIHGYINENRITV-DAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGG 417 (619)
Q Consensus 342 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 417 (619)
.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+.-.+. ++.--...++-+...++-..+..+|++.+..+
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 8998888877666 77778888887764 6778888888865432 33344556677777788888888888888776
Q ss_pred CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCC
Q 007077 418 AKPDD--ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQ--IQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 418 ~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 473 (619)
+.|+. ..|..+|.--+.-|++..+.++-+++...+. ..|....-..+++.|.-.+.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 66664 4788888777788888888877777665443 23332333444555544443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00038 Score=72.35 Aligned_cols=439 Identities=14% Similarity=0.078 Sum_probs=212.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChh-HHHH---HHH------HHHHh-------
Q 007077 55 AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVK-KGEK---VHG------YVVKT------- 117 (619)
Q Consensus 55 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~---~~~------~~~~~------- 117 (619)
.-+.|..-.-+.++..--+..++.....|.. |..+++++.+.|...++-. .-.+ .++ ...++
T Consensus 840 ~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~v 918 (1666)
T KOG0985|consen 840 PVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACV 918 (1666)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEE
Confidence 3445566666677777777788888888765 7788888888776544332 2111 111 11111
Q ss_pred ----CC--------CCChhhHHHHHHHhHhcCChhHHHHHHccC----------------C-CCCeecHHHHHHHHHcCC
Q 007077 118 ----GL--------EFDTYVCNSIMDMYGVLGKICNVKKLFDEM----------------P-DKDVVSWNVSISGHVKCM 168 (619)
Q Consensus 118 ----g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----------------~-~~~~~~~~~li~~~~~~g 168 (619)
|. ......|..+.+-+.+..|.+-=.+++.+- + ..|+...+.-+.++...+
T Consensus 919 aYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtad 998 (1666)
T KOG0985|consen 919 AYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTAD 998 (1666)
T ss_pred eecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcC
Confidence 10 000112222222222333333222222111 0 134444555566666666
Q ss_pred ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 169 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
-+.+-+++++.+.-....-........++-.-+-.-+.....+..+.+..-.. -.+......++-+++|..+|+
T Consensus 999 Lp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa------~~ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 999 LPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA------PDIAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred CcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc------hhHHHHHhhhhHHHHHHHHHH
Confidence 66666666666543111100111111111111111122222222222211111 123344455566677777776
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007077 249 EMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALL 328 (619)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 328 (619)
+..- +....+.||. .-+.++.|.+.-++...| ..|..+..+-.+.|...+|++-|-+. -|...|..++
T Consensus 1073 kf~~-n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi 1140 (1666)
T KOG0985|consen 1073 KFDM-NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVI 1140 (1666)
T ss_pred Hhcc-cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHH
Confidence 5431 1111122221 335566666665555543 45777777777778877777776533 2445677778
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHH
Q 007077 329 TGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALE 408 (619)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 408 (619)
+.+.+.|.+++-...+....+..-.|.. -+.|+-+|++.+++.+-++++. .||......+.+-|...|.++.|.-
T Consensus 1141 ~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHH
Confidence 8888888888877777777666544443 3567777887777766655532 3444444555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007077 409 LFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN 488 (619)
Q Consensus 409 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 488 (619)
+|... .-|..+...+...|.+..|...-++. .+..+|..+..+|...+.+.-| +|..-.
T Consensus 1216 ~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~ 1274 (1666)
T KOG0985|consen 1216 LYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGLN 1274 (1666)
T ss_pred HHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCce
Confidence 44422 12334444444445444444332211 2334455444444444333322 122111
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 489 NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
......-..-++.-|...|-+++-+.+++...+++..+...+..|+-.|.
T Consensus 1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 22222224445555555555555555555555555555554554444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-05 Score=87.06 Aligned_cols=324 Identities=13% Similarity=0.017 Sum_probs=196.7
Q ss_pred HHHhcCChhhHHHHhccCCC----CCchhHHHHHHHHHhcCCHHHHHHHHccCC----CC----C--h--hhHHHHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPN----KNVICWTSMVSGYVNCGQLEKARDLFDRSP----VR----D--I--VLWTAMINGY 296 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~----~--~--~~~~~li~~~ 296 (619)
.....|+++.+..+++.+.. .+..........+...|++++|...+.... .. + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34556777777777766632 222223334445556778888777665321 11 1 1 1122233445
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 007077 297 VQFNRFDEAVALFREMQIIRLKPDK----FILVALLTGCAQLGALEQGKWIHGYINENRI---TV--DAVVATALIEMYA 367 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 367 (619)
...|++++|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788999999998887653111121 2334455566778999998888877654211 11 1234455667788
Q ss_pred hCCCHHHHHHHHHhcCCC-------C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 007077 368 KCGLIEKALEIFYELREK-------D----AASWTSIICGLAMNGKINKALELFSQMISGG--AKPD--DITFIGVLSAC 432 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~-------~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~ 432 (619)
..|++++|...+++.... + ...+..+...+...|++++|...+++..... ..+. ..++..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998887765421 1 1223445566677899999999888875531 1122 22444455667
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCCccc---HHHHHHHHHHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPKLEHY-----GCLIDLLGRAGLLDEAEELIRKIPNENNEII---VPLYGALLSACR 504 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 504 (619)
...|+.+.|...++..............+ ...+..+...|+.+.|.+.+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999998888875431111111111 1122444568899999999877653211111 111345666788
Q ss_pred HcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 505 IYGNVDMGEKLAALLEKIES------KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..|++++|...++++..... ....++..++.+|.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999888865421 22335677888899999999999999888753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-07 Score=79.25 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=113.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776544433221 11 0122356677777777777653 35668899999999999999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSA-CRIYGN--VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
+++|...+++... -.+.+...+..+..+ +...|+ .++|.++++++.+.+|+++.++..++..+.+.|++++|...+
T Consensus 89 ~~~A~~a~~~Al~-l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQ-LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998873 244455568888876 467777 599999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 007077 551 QKMKEMG 557 (619)
Q Consensus 551 ~~m~~~~ 557 (619)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9998744
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-05 Score=77.76 Aligned_cols=268 Identities=13% Similarity=0.038 Sum_probs=164.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHH-HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH--
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIR-LKPDKFIL-VALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA-- 361 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 361 (619)
...|..+...+...|+.+.+...+....+.. ..++.... ......+...|+++.+..+++.+.+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456666666667777777766666654332 12232211 122234456788888888888877653 444444431
Q ss_pred -HHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 007077 362 -LIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGG 436 (619)
Q Consensus 362 -l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 436 (619)
........+..+.+.+.+......+ ......+...+...|++++|...+++..+. .|+ ...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 2222223455666666666533332 234445567888999999999999999987 555 456777888899999
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-cccHHHH-H--HHHHHHHHcCCHH
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKL--EHYGCLIDLLGRAGLLDEAEELIRKIPNENN-EIIVPLY-G--ALLSACRIYGNVD 510 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~ 510 (619)
++++|..+++.........|+. ..|..+...+...|++++|..++++...... ....... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999887642222332 3456788899999999999999998752211 2221111 1 2333344555444
Q ss_pred HHHHH---HHHHhccCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 511 MGEKL---AALLEKIESK--DSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 511 ~a~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.+.+. ........|. ........+.++...|+.++|.+.++.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44433 2222111122 1222246777888999999999999998753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-06 Score=74.85 Aligned_cols=281 Identities=11% Similarity=0.106 Sum_probs=157.6
Q ss_pred HHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCcH
Q 007077 262 VSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVA-LLTGCAQLGAL 337 (619)
Q Consensus 262 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~ 337 (619)
+..+.+..++++|++++..-. +++....+.+..+|....++..|...|+++-. ..|....|.. -..++.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhccc
Confidence 333344444444444443222 22344455566666666666666666666654 2343333322 12344455555
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhCCCHHHHHHHHHhcC-CCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007077 338 EQGKWIHGYINENRITVDAVVATALI----EMYAKCGLIEKALEIFYELR-EKDAASWTSIICGLAMNGKINKALELFSQ 412 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 412 (619)
..|..+...+.+. + ...+..+ ......+++..+..++++.. +.+..+.+.......+.|+++.|++-|+.
T Consensus 95 ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 5565555554332 1 1111111 11234556666666666666 34555555555555677777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-------------Ch---------------hHHHHH
Q 007077 413 MISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-------------KL---------------EHYGCL 464 (619)
Q Consensus 413 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~---------------~~~~~l 464 (619)
..+-|---....|+..+..| +.|+++.|.+...+++++ |++. |+ ..+|.-
T Consensus 170 AlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 66543233334555544333 456677777777666654 4321 11 122223
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
...+.+.|+++.|.+.+..|+.+ ....++.|...+.-. ...|++..+.+-+.-+.++.|-.+.++..+.-+|++..-+
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 33456789999999999999832 122233335444322 2356677777777777888888788888888899999999
Q ss_pred HHHHHHHHH
Q 007077 544 EDVTNVRQK 552 (619)
Q Consensus 544 ~~A~~~~~~ 552 (619)
+-|..++-+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 888877754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-06 Score=92.95 Aligned_cols=203 Identities=13% Similarity=0.138 Sum_probs=163.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 007077 353 TVDAVVATALIEMYAKCGLIEKALEIFYELREK--------DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT 424 (619)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 424 (619)
|.....|-..+......++.++|.++++++... -...|.++++.-...|.-+...++|+++.+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556677888888888889999999998887642 2457888888888888888899999998875 222346
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHH
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP-NENNEIIVPLYGALLSAC 503 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~ 503 (619)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++.++. .-|.........-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888889999999999999999998765 556788889999999999899999988766 223333444466666777
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
.+.|+.++++.+|+....-.|.....|..+++.-.+.|+.+.+..+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999998888999999999999999999999999886654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-05 Score=84.94 Aligned_cols=404 Identities=10% Similarity=-0.008 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHHhCCC--C-C----hhhHHHHHHHhHhc----CChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHH
Q 007077 105 KKGEKVHGYVVKTGLE--F-D----TYVCNSIMDMYGVL----GKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDA 173 (619)
Q Consensus 105 ~~a~~~~~~~~~~g~~--~-~----~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 173 (619)
+.+..+++.+.+.|+. + + .+.|+.++.-+.+. .+.+....+ +......+...|++.+|
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~~A 360 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPSEA 360 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHHHH
Confidence 3456777777777751 1 1 24456666554432 122222222 22334455666777766
Q ss_pred HHHHHHhHhcCCCCCChhhHHHHH----HHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 174 VDVFRRMRQGCNLMPDEGTVVSTL----SACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 174 ~~~~~~m~~~~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
...+..... ......++ ......|..+....++..+... ...++.........+...|++++|...+.
T Consensus 361 l~~a~~a~d-------~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~ 433 (903)
T PRK04841 361 IHHALAAGD-------AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLA 433 (903)
T ss_pred HHHHHHCCC-------HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHH
Confidence 655444311 11111111 2233456666666665554222 22333344445555667788888877776
Q ss_pred cCCC----CC---c---h--hHHHHHHHHHhcCCHHHHHHHHccCC----CCCh----hhHHHHHHHHHHcCChhHHHHH
Q 007077 249 EMPN----KN---V---I--CWTSMVSGYVNCGQLEKARDLFDRSP----VRDI----VLWTAMINGYVQFNRFDEAVAL 308 (619)
Q Consensus 249 ~~~~----~~---~---~--~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~ 308 (619)
.... .+ . . ....+...+...|++++|...+++.. ..+. ...+.+...+...|++++|...
T Consensus 434 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 434 RAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred HHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5422 11 1 1 11222344557888888888776532 1221 2445666777889999999999
Q ss_pred HHHHHHcCC---CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCCC---ChhHHHHHHHHHHhCCCHHHHH
Q 007077 309 FREMQIIRL---KP--DKFILVALLTGCAQLGALEQGKWIHGYINEN----RITV---DAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 309 ~~~m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
+.+.....- .+ ...++..+...+...|+++.|...+...... +... ....+..+...+...|++++|.
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 988754211 11 1234455666778899999999888776542 2211 2233445666777889999999
Q ss_pred HHHHhcCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHhccCcHHHHH
Q 007077 377 EIFYELREK--------DAASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITF-----IGVLSACSHGGLVDEGR 442 (619)
Q Consensus 377 ~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~g~~~~a~ 442 (619)
..+.+.... ....+..+...+...|++++|...+++........ ....+ ...+..+...|+.+.|.
T Consensus 594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 888876421 12344456667889999999999998875421111 11111 11123345578999999
Q ss_pred HHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCCcc-cHHHHHHHHHHHHHcCCHHHHHH
Q 007077 443 RFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGLLDEAEELIRKIPN----ENNEI-IVPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
.++...... ..... ...+..+..++...|++++|...+++... .+... ...+...+..++...|+.++|..
T Consensus 674 ~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 674 NWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 987765431 11111 11134567788899999999999987652 12221 23346666778899999999999
Q ss_pred HHHHHhccCCCCc
Q 007077 515 LAALLEKIESKDS 527 (619)
Q Consensus 515 ~~~~~~~~~p~~~ 527 (619)
.+.++.++.....
T Consensus 753 ~L~~Al~la~~~g 765 (903)
T PRK04841 753 VLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHhCccc
Confidence 9999987775543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.7e-07 Score=74.57 Aligned_cols=94 Identities=5% Similarity=-0.223 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 540 (619)
+..+...+...|++++|...|+... .-++.+...|..+..++...|++++|+..|+++.+++|+++.++..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344555556666666666666555 223444445666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHh
Q 007077 541 NRWEDVTNVRQKMKE 555 (619)
Q Consensus 541 g~~~~A~~~~~~m~~ 555 (619)
|++++|...+++...
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-07 Score=75.18 Aligned_cols=125 Identities=10% Similarity=-0.031 Sum_probs=100.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 407 LELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
..+|++.++. .|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++...
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666655 5654 445667778899999999999998753 244578888999999999999999999998883
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
.++.+...+..+..++...|++++|+..++++.++.|+++..+...+.+..
T Consensus 87 -l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 -LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred -cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 355566669999999999999999999999999999999998877776544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-08 Score=58.12 Aligned_cols=33 Identities=36% Similarity=0.544 Sum_probs=24.5
Q ss_pred CCCCChhhHHHHHHHhHhcCChhHHHHHHccCC
Q 007077 118 GLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMP 150 (619)
Q Consensus 118 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 150 (619)
|+.||..+||.||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-06 Score=78.05 Aligned_cols=184 Identities=12% Similarity=0.011 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---Chh---h
Q 007077 319 PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDA---VVATALIEMYAKCGLIEKALEIFYELREK---DAA---S 389 (619)
Q Consensus 319 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---~ 389 (619)
.....+......+...|+++.|...++.+.+.. +.++ ..+..+..+|...|++++|...|+++.+. +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888999999999999999988764 2222 46677889999999999999999998643 222 4
Q ss_pred HHHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 390 WTSIICGLAMN--------GKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
+..+..++... |++++|.+.|+++... .|+.. ....+..... . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-H--------HH
Confidence 55566666654 7899999999999987 66643 2221111100 0 0000 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC-C-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE-N-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
...+...|.+.|++++|+..+++.... | .+.....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999999887632 2 233456788999999999999999999888876655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=85.67 Aligned_cols=197 Identities=14% Similarity=0.092 Sum_probs=111.8
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 351 RITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
+.+|-...-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+-.+. +||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555556667777788888888888888764 46777777888888888888877777774 777777777777
Q ss_pred HHhccCcHHHHHHHHHHhHHh--c-----------------------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 431 ACSHGGLVDEGRRFFNTMTEV--Y-----------------------QI-QPKLEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~--~-----------------------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
..-...-+++|.++.+....+ . .+ +....+|..+.-+..+.++++.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 665555566666655543321 0 00 111234444444444555555555555444
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
. ..++.....||.+-.+|.+.|+-.+|...++++.+-+-.+..+|....-+..+-|.|++|.+.+.++.+
T Consensus 546 v-tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 V-TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred h-hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 4 223333334555555555555555555555555554444444444444444455555555555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-06 Score=73.60 Aligned_cols=128 Identities=14% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
..+-..+...|+-+....+...... ..+.|......++....+.|++.+|...|++.. .+.+++...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCCCChhhhhHHHHHHHH
Confidence 3344455555555555555554332 223334444456666666666666666666665 3455555566666666666
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 506 YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.|++++|...|.++.++.|+++.+++.|+..|.-.|+++.|..++......
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 666666666666666666666666666666666666666666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=74.89 Aligned_cols=184 Identities=11% Similarity=-0.020 Sum_probs=108.7
Q ss_pred HHHhCC-CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007077 365 MYAKCG-LIEKALEIFYELREK---DAASWTSIICGLAMNGKI--NKALELFSQMISGGAKPD-DITFIGVLSACSHGGL 437 (619)
Q Consensus 365 ~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 437 (619)
++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++.+++++++. .|. ..+|.....++...|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhh
Confidence 333444 345555555554422 334455444444444442 5566666666655 343 4466666666666677
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CC----HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc----
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---GL----LDEAEELIRKIPNENNEIIVPLYGALLSACRIY---- 506 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 506 (619)
++++++.++++++. -+-+...|+....++.+. |. .++++++..++.. -++.+...|+.+...+...
T Consensus 158 ~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~-~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL-ANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH-hCCCCcCHHHHHHHHHhcCCccc
Confidence 77777777777653 123345555555444433 22 2456666645441 1333334488777777663
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC------------------ChHHHHHHHHHH
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN------------------RWEDVTNVRQKM 553 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 553 (619)
++..+|.+.+.++...+|.++.+...|+++|+... ..++|.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 44567888888888888999988899999998642 236677777777
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-06 Score=83.93 Aligned_cols=215 Identities=14% Similarity=0.084 Sum_probs=171.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
-..+...+...|-...|+.+|++.. .+..++.+|+..|+..+|..+..+..+ -+|++..|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3456677888899999999998763 367788889999999999998888777 37899999999888888
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 369 CGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
..-+++|.++++....+ +-..+.......++++++.+.|+.-.+. .|- ..+|..+..+..+.++++.|.+.|..
T Consensus 470 ~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred hHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88889999998876543 2222222234579999999999987765 444 45888888888899999999999998
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 448 MTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 448 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
... ..|| ...||.+-.+|.+.|+-.+|...+.+..+.. ..+...|...+-...+-|.++.|++.+.++..+.
T Consensus 545 cvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 545 CVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred Hhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 874 3555 7899999999999999999999999988543 3444458888888899999999999999986544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-06 Score=80.53 Aligned_cols=249 Identities=14% Similarity=0.053 Sum_probs=171.4
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
-+.+.|+..+|.-.|+..++.. +-+...|..|....+..++-..|+..+.+..+.. +.+..+..+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567788888888888776653 2244467777777777777777888888877765 5567777888888888888888
Q ss_pred HHHHHHhcCCCChh-hHHHHH---------HHHHhCCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 375 ALEIFYELREKDAA-SWTSII---------CGLAMNGKINKALELFSQMI-SGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 375 A~~~~~~~~~~~~~-~~~~l~---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
|++.|+......+. .|.... ..+..........++|-++. ..+..+|......|.-.|--.|.+++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 88888775321100 000000 11122222344555555554 45544666677777777888999999999
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 444 FFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 444 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
.|+.+.. ++|+ ..+||.|...++...+.++|+..|++... -.|..+..+..|.-+|...|.+++|.+.|-.++.+
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999885 3554 78899999999999999999999999872 23333444778888999999999999998888765
Q ss_pred CCC----------CcchHHHHHHHHHhCCChHHHHHH
Q 007077 523 ESK----------DSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 523 ~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
.+. +..+|..|=.++.-.++.|-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 544 123566666667777776644443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.3e-06 Score=85.84 Aligned_cols=141 Identities=10% Similarity=0.033 Sum_probs=114.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 463 (619)
++..+..|.....+.|.+++|..+++...+. .||.. ....+...+.+.+++++|...+++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 5778888888899999999999999999887 88854 6777788888999999999999888753 444 667777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
+..++.+.|++++|.++|+++.. +.+....++..+..++...|+.++|...|+++.+...+-...|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88888899999999999999885 455556678888888999999999999999998776555444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-05 Score=84.71 Aligned_cols=227 Identities=14% Similarity=0.132 Sum_probs=158.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--------CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC
Q 007077 213 HRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--------KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR 284 (619)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 284 (619)
|++++...|.+...|-..|......++.++|++++++... .-...|.++++.-..-|.-+...++|++..+-
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 3444445666677777777788888888888888777654 12335777777777777777777777776543
Q ss_pred -C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CChhHHHH
Q 007077 285 -D-IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT-VDAVVATA 361 (619)
Q Consensus 285 -~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 361 (619)
| ...|..|...|.+.+.+++|.++|+.|.+. .......|...+..+.+..+-+.|..++.++++.-.. .......-
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2 356777888888888888888888888664 2344556777778888888888888888877764211 24455566
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccC
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--ITFIGVLSACSHGG 436 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g 436 (619)
.+.+-.+.|+.+.+..+|+..... -...|+..++.-.++|+.+.+..+|++.+..++.|-. +.|...+..--..|
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 677777888888888888876632 4667888888888888888888888888888777654 34455554444445
Q ss_pred cHHH
Q 007077 437 LVDE 440 (619)
Q Consensus 437 ~~~~ 440 (619)
+-..
T Consensus 1686 de~~ 1689 (1710)
T KOG1070|consen 1686 DEKN 1689 (1710)
T ss_pred chhh
Confidence 4443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.4e-06 Score=67.32 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=99.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
+......+...+...|++++|..+|+-... -++.+...|..|..+|...|++++|+..|.++..++|+++.++..++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~-~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI-YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 355566677788899999999999998773 3556666799999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 007077 537 YASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLD 602 (619)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 602 (619)
|...|+.+.|.+.|+......- .+|+...+......+...+.+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999998876210 256666666665555555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-07 Score=54.82 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 453 QIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 453 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=69.51 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=112.3
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 442 (619)
+-.|...|+++....-.+.+..+. ..+...++.++++..+++.++.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777777766544443322211 01123566788888888877762 334568888888899999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLL-GRAGL--LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
..|++..+. .+.+...+..+..++ ...|+ .++|.+++++... .++.+...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~-~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALA-LDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988763 234577778888764 67776 5899999998883 35555667888888999999999999999999
Q ss_pred hccCCCCcchH
Q 007077 520 EKIESKDSSFH 530 (619)
Q Consensus 520 ~~~~p~~~~~~ 530 (619)
.++.|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998877633
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-05 Score=81.71 Aligned_cols=145 Identities=10% Similarity=0.094 Sum_probs=119.5
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 007077 351 RITVDAVVATALIEMYAKCGLIEKALEIFYELRE--K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFI 426 (619)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 426 (619)
..+.++..+..|.......|..++|..+++.+.+ | +...+..++..+.+.+++++|+..+++.... .|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 3567788999999999999999999999999874 3 5677888999999999999999999999988 78765 556
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALL 500 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 500 (619)
.+..++.+.|++++|..+|+++... .+-+...+..+...+.+.|+.++|...|++.... ..+....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 6667888999999999999999863 2344788999999999999999999999998733 222223455554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-05 Score=73.42 Aligned_cols=149 Identities=17% Similarity=0.129 Sum_probs=115.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVL-SACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 463 (619)
....+....-.+...|++++|+..++.++.. .|+...|..+. ..+...++.++|.+.++.+... .|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHH
Confidence 3444444555566788999999999998887 78876665554 6788899999999999998854 566 566777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
+..+|.+.|++.+|+.++++... .++.++..|..|..+|...|+..++... .+..|...|+|
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~ 441 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLF-NDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRL 441 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCH
Confidence 88899999999999999988773 3444555699999999999988777654 45567888999
Q ss_pred HHHHHHHHHHHhCC
Q 007077 544 EDVTNVRQKMKEMG 557 (619)
Q Consensus 544 ~~A~~~~~~m~~~~ 557 (619)
++|...+...++..
T Consensus 442 ~~A~~~l~~A~~~~ 455 (484)
T COG4783 442 EQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998888754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-06 Score=69.43 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
......+...+...|++++|.+.++..... ++.+...|..+...+...|++++|...++++.+.+|+++..+..++.+|
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 344555666666777777777777666522 3334445677777777777777777777777777777777777777777
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-05 Score=66.87 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG 469 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 469 (619)
..+...+...|+-+....+....... .| |.......+....+.|++..|...+++... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 44455566666666666666554433 22 233444456666677777777777777665 44666777777777777
Q ss_pred hcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 470 RAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
+.|++++|..-|.+.. ..+..|. ..+.+...+.-.|+.+.|+.++..+....+.++.+-..|+.+....|++++|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 7777777777776655 1223333 267777777777777777777777777777777777777777777777777765
Q ss_pred HHH
Q 007077 549 VRQ 551 (619)
Q Consensus 549 ~~~ 551 (619)
+..
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00022 Score=75.85 Aligned_cols=151 Identities=14% Similarity=0.112 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCC
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNG 401 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 401 (619)
..+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|... ++++|.+++.+.. ..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 355566666667777777777777776665 56677777777777777 7777777766543 3366666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDIT-FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
++..+.+++.++... .|+... |..+++. +...-+..--+.++..+...|-...+++++..+
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~f~~i~~k----------------i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDFFLRIERK----------------VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchHHHHHHHH----------------HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 777778888877776 555432 2222221 211112222233445555666666677777777
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHH
Q 007077 481 IRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
++.+... ++.+..+..-++..|.
T Consensus 246 LK~iL~~-~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEH-DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhc-CCcchhhHHHHHHHHH
Confidence 7766632 3334333444554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00043 Score=65.87 Aligned_cols=233 Identities=14% Similarity=0.080 Sum_probs=144.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALIEMY 366 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (619)
+..+-..+...++.++|+.++.++.+ +.|+.. .+..--.++...+ +++++...+..+.+.. +.+..+|+.-...+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 34444455566777788888887776 345444 3333333444455 5677777777777654 44555666555555
Q ss_pred HhCCCH--HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---Cc-
Q 007077 367 AKCGLI--EKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHG---GL- 437 (619)
Q Consensus 367 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~- 437 (619)
.+.|+. ++++.+++++.+ +|..+|+.....+...|+++++++.++++++.+.. |..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 555652 567777776654 36677888888888888899999999998887422 334555554444333 22
Q ss_pred ---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC---
Q 007077 438 ---VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA----GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG--- 507 (619)
Q Consensus 438 ---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 507 (619)
.++...+...++.. .+-+...|+.+...+... +...+|.+.+.+... ..+.+......|+..|....
T Consensus 196 ~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 196 EAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-KDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred cccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-ccCCcHHHHHHHHHHHHhhhccc
Confidence 24566666666642 234467788777777763 345668888877653 34555566777888776532
Q ss_pred ---------------CHHHHHHHHHHHhccCCCCcc
Q 007077 508 ---------------NVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 508 ---------------~~~~a~~~~~~~~~~~p~~~~ 528 (619)
..++|.++++.+.+.+|-...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~ 308 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRN 308 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHH
Confidence 235677777666555554444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0005 Score=60.68 Aligned_cols=177 Identities=13% Similarity=0.089 Sum_probs=118.4
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 344 HGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
.+.+.......+......-...|+..|++++|++..+... +......=...+.+..+.+-|...+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 3334333333343333334456888888999988888733 3333333445566777888899999988854 2445
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 424 TFIGVLSACSH----GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 424 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
|.+.+..++.+ .+.+.+|.-+|+++.+ ..+|+..+.+....+....|++++|..+++....+ +..++.+...+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-d~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 77767776643 4568888889998876 45788888888888888889999999998888743 44444455555
Q ss_pred HHHHHHcCCH-HHHHHHHHHHhccCCCCcc
Q 007077 500 LSACRIYGNV-DMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 500 ~~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 528 (619)
+..-...|.. +--.+...++....|..+.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 5555555554 4455667777777777765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=78.14 Aligned_cols=125 Identities=14% Similarity=0.029 Sum_probs=105.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSAC 503 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (619)
...+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++... ..+.+...+......|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~-~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALK-ENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 3456667777788999999999998864 355 445588888888999999999998883 2444566677777889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...++++.|+.+.+++.+..|.+...|..|+.+|...|++++|+-.++.++
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999887
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0062 Score=63.13 Aligned_cols=492 Identities=13% Similarity=0.113 Sum_probs=256.6
Q ss_pred CCCChhHHHHhhccCC--CCCcccHHHHHHHHH--hcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHH
Q 007077 34 SHGNLLYAEKIFGSIQ--SPCLLAYNLLIKAFA--KKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEK 109 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 109 (619)
..+++..|....+++. .||. .|..++.++. |.|+.++|..+++.....+.. |..|...+-.+|...++.+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3456666666666553 2332 3455555544 678888888777776554332 56677777777778888888888
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHhHhcCChh----HHHHHHccCCCCCeecHHHHHHHHHcCC-Ch---------hHHHH
Q 007077 110 VHGYVVKTGLEFDTYVCNSIMDMYGVLGKIC----NVKKLFDEMPDKDVVSWNVSISGHVKCM-RF---------EDAVD 175 (619)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~---------~~A~~ 175 (619)
++++.... .|+......+..+|.|.+.+. .|.++++..++.--..| ++++...+.. .. .-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHH
Confidence 88877763 355666666777777776654 46666665554333333 3333333221 11 23455
Q ss_pred HHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHH-HHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC
Q 007077 176 VFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHR-YINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK 253 (619)
Q Consensus 176 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 253 (619)
.++.+.+..|---+..-...-+......+.+++|..++. ..... .+.+...-+.-++.+...+++.+-.++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666665523322222223333444566788888888873 33333 5556666677788888888888877766666542
Q ss_pred CchhHHHHHHHHHh----------------cCCHHHHHHHHccCCCC-ChhhHHHHHHHHH---HcCChhHHHHHHHHHH
Q 007077 254 NVICWTSMVSGYVN----------------CGQLEKARDLFDRSPVR-DIVLWTAMINGYV---QFNRFDEAVALFREMQ 313 (619)
Q Consensus 254 ~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 313 (619)
+..-|...++.+++ .+..+...+...+.... .--.|-+-+..+. .-|+.+++...|-+
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~-- 333 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK-- 333 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--
Confidence 22215444443321 11222222222221111 1122333333333 34777776655432
Q ss_pred HcCCCC----CHHH---------HHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC-----HHH
Q 007077 314 IIRLKP----DKFI---------LVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL-----IEK 374 (619)
Q Consensus 314 ~~g~~p----~~~~---------~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~ 374 (619)
+-|-.| |... ...++..+.... +.....++.+. +...+..-.-.|. -+.
T Consensus 334 kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 334 KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH------------HHHHHHHHHHhhccccCChHH
Confidence 222222 1111 122222222211 11111111111 0011111111111 011
Q ss_pred HHHHH----HhcCCC---------------C---hhhHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCC-CHHHHHHH
Q 007077 375 ALEIF----YELREK---------------D---AASWTSIICGLAMNGKIN---KALELFSQMISGGAKP-DDITFIGV 428 (619)
Q Consensus 375 A~~~~----~~~~~~---------------~---~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~~~~~l 428 (619)
-..++ .....+ + .-+-+.|+..+.+.++.. +|+-+++.-... .| |..+-..+
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlL 479 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLL 479 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHH
Confidence 11111 111110 0 123466778888888765 455566655544 34 34466677
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C--CCcccHHHHHHHHHHH
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN---E--NNEIIVPLYGALLSAC 503 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~~~~~l~~~~ 503 (619)
+..|+-.|-...|.++|+.+--+ .+..|...|. +...+...|++..+...++.... . ...+. | +...
T Consensus 480 iriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---y---I~~A 551 (932)
T KOG2053|consen 480 IRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPE---Y---IALA 551 (932)
T ss_pred HHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---H---HHHH
Confidence 88898889999999999988655 6666643332 34455667888888888876541 1 12222 2 2223
Q ss_pred HHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 504 RIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.+.|.+..-.++..--..+.-. -...-....+.+...++.++-.+.++.|.
T Consensus 552 Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 552 YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 4667776666553322222211 11222455667788889888888888886
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00011 Score=77.96 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=143.2
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFI-LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA 361 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 361 (619)
+.+...|..|+..|...+++++|.++.+...+ ..|+... |..+...+.+.++...+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 34667899999999999999999999997666 4565543 22233355566665554443 2
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
++.......++.-...+...+.+ .+..++..++.+|-+.|+.++|...|+++++.. .-|..+.+.+...++.. +.+
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22333333333222222223322 134467778888888888888888888888874 22356778888888777 888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHH---HHHH--hcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLI---DLLG--RAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~---~~~~--~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
+|.+++.+++..+ -+..-|+.+. .-++ ...+.+.-..+.+++... +....+.++--+-..|...++++++.
T Consensus 167 KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 167 KAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 8888887776541 0100111111 1111 112223333333333311 12222333555556778889999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHH
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
.+++.+.+.+|.|..+...++.+|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999999999999998887
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0072 Score=62.68 Aligned_cols=222 Identities=15% Similarity=0.137 Sum_probs=104.6
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhH
Q 007077 64 AKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVG--WLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICN 141 (619)
Q Consensus 64 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 141 (619)
...+++..|++....+.+. .||. .|..++.++. +.|..++|..+++.....+.. |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4455666666666666554 2332 2444444443 566666666666655544433 55566666666666666666
Q ss_pred HHHHHccCCCC--CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCC-ChHHHHHHHHHHHH
Q 007077 142 VKKLFDEMPDK--DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALK-NLELGKEIHRYINQ 218 (619)
Q Consensus 142 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 218 (619)
|..+++..... +......+..+|+|.+.+.+-.+.--+|-+ .++-+...+-.+++...... ..+.+..
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~------- 166 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLD------- 166 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCccccc-------
Confidence 66666665542 222233334455555544432222222211 12223344444444322111 1111000
Q ss_pred hccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCC-c-h---hHHHHHHHHHhcCCHHHHHHHHc-----cCCCCChhh
Q 007077 219 ELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKN-V-I---CWTSMVSGYVNCGQLEKARDLFD-----RSPVRDIVL 288 (619)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~---~~~~li~~~~~~g~~~~A~~~~~-----~~~~~~~~~ 288 (619)
.. -..-|.+.++.+.+.+ . . -.-.....+-..|++++|.+++. ....-+...
T Consensus 167 ------~i------------~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l 228 (932)
T KOG2053|consen 167 ------PI------------LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYL 228 (932)
T ss_pred ------ch------------hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHH
Confidence 00 0112333333333321 0 0 01112233345666777777663 222334444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIR 316 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g 316 (619)
-+--+..+...+++.+..++-.++...|
T Consensus 229 ~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 229 ENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4555666777788888888777777765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00022 Score=62.30 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREKDAASWTSI---ICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH 434 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 434 (619)
++..++-+...+|+.+.|...++++..+-+.++... .--+-..|++++|+++|+..++.. +.|.+++-.-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344555566677777777777777664333332221 223456789999999999999884 3345677776767777
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC---CHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG---NVDM 511 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 511 (619)
.|.--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++..- .|.++..+..+...+...| +.+.
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 7888888888888887 55788999999999999999999999999998722 3333334666666654444 6788
Q ss_pred HHHHHHHHhccCCCCcchHH
Q 007077 512 GEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~ 531 (619)
+.+.|.++.++.|.+...+.
T Consensus 210 arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHhChHhHHHHH
Confidence 99999999999997665443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00011 Score=70.59 Aligned_cols=124 Identities=17% Similarity=0.038 Sum_probs=106.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGN 508 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (619)
.-.+...|..++|+..++.+.. ..+.|+..+....+.+.+.++.++|.+.++++... ++.....+-.+..++.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCC
Confidence 3345577899999999999887 44455667777889999999999999999998832 33335558889999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.+|++.++....-+|+++..|..|+.+|...|+..+|.....++..
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-05 Score=65.12 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=91.3
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 408 ELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 408 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+.+++.+.. .|+. .....+...+...|++++|...++.+... .+.+...+..+..++.+.|++++|...+++...
T Consensus 4 ~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566655 5544 45666667788889999999999988763 244677888899999999999999999988763
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.++.+...+..+...+...|++++|...++++.+++|++...
T Consensus 80 -~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 -LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred -cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 244455568888888999999999999999999999988773
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.8e-05 Score=65.05 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=143.2
Q ss_pred hCCCHHHHHHHHHhcCCC--------Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCc
Q 007077 368 KCGLIEKALEIFYELREK--------DA-ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVL-SACSHGGL 437 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~--------~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~ 437 (619)
...+.++..+++.++... +. ..|..++-+....|+.+.|...++++... .|.+.-...+= .-+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhc
Confidence 456788888888877631 22 23455666777889999999999999887 46654322222 23456799
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAA 517 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (619)
+++|.++++.+... -+.|..++-.=+...-..|+.-+|++-+.+... ....+...|.-+...|...|+++.|.-+++
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999874 255577777777777788888899988877762 345566779999999999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHHHhCCC
Q 007077 518 LLEKIESKDSSFHTLLANIYASAN---RWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 518 ~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 558 (619)
++.=+.|-++..+..+++++.-.| +.+-|.+++.+..+...
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999877765 56678888988887654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0058 Score=59.65 Aligned_cols=213 Identities=11% Similarity=0.064 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC---CHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 338 EQGKWIHGYINENRITVDAVVATALIEMYAKCG---LIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
+++..+++.....-...+..+|..+.+.-...- ..+.....++++.. .-.-+|..+++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555544333334444444443221111 24444555555442 23457888888888899999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--
Q 007077 411 SQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-- 487 (619)
Q Consensus 411 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 487 (619)
.+..+.+..+ +.....+++.-+| .++.+-|.++|+.=.++++ .++.--...++-+..-++-..|..+|++....
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 4557777777665 4788999999998777553 44555677888899999999999999998865
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS----SFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+..-+..+|..++.--..-|+...+.++-++.....|.+. ..-..+++-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2333456799999999999999999999888876666221 11345666677677665555444444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-06 Score=51.42 Aligned_cols=35 Identities=40% Similarity=0.749 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 007077 54 LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDN 88 (619)
Q Consensus 54 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 88 (619)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.7e-05 Score=73.20 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHG 435 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 435 (619)
....+|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++.+.. .|. ...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344567777788899999999999999888888888999999999999999999999876 554 44555556678899
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
++++.|..+.+++... .|+ ..+|..|+.+|.+.|++++|+..++.++.
T Consensus 248 ~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999853 455 67999999999999999999999998873
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-05 Score=62.92 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=57.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc--HHHHHHHHHHHHHcCCHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII--VPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 511 (619)
.++...+...++.+...++-.| .....-.+...+...|++++|...|+.+......+. ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554321110 012223344555556666666666665553321111 1123334455556666666
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
|+..++.. ...+-.+..+...+++|.+.|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 12222334455666667777777777666654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-06 Score=50.20 Aligned_cols=34 Identities=41% Similarity=0.728 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCC
Q 007077 53 LLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSP 86 (619)
Q Consensus 53 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 86 (619)
+.+||.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578899999999999999999999998888877
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00027 Score=66.16 Aligned_cols=157 Identities=15% Similarity=0.061 Sum_probs=116.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH------------
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY------------ 461 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------------ 461 (619)
.++...|++++|.+.--..++. .+. ......-..++...++.+.+...|++.. ...|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 4567788888888887777655 332 2222222234456778888888888766 445653321
Q ss_pred -HHHHHHHHhcCCHHHHHHHHhhCCC---CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 462 -GCLIDLLGRAGLLDEAEELIRKIPN---ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 462 -~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..=..-..+.|++.+|.+.+.+... ....++...|.....+..+.|+.++|+.-.+++.+++|.-..+|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 1223445688999999999998872 223445556777777788999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...++|++|.+-+++....
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-06 Score=49.81 Aligned_cols=34 Identities=35% Similarity=0.667 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD 320 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 320 (619)
.+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0002 Score=60.03 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=85.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDD----ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGC 463 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 463 (619)
|..++..+ ..++...+...++.+... .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44444444 477888888888888876 4443 23444556777888888888888888875 32222 124445
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+..++...|++++|+..++.....+ .....+......+...|++++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6778888899999999887754333 33445667778888899999999888765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.1e-05 Score=72.57 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=51.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...|+++.|...|++++.. -+.+...|..+..+|.+.|++++|+..++++.. -++.....|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~-l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE-LDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHhCCHH
Confidence 344455556666555555542 122344455555555555555555555555542 12233334555555555555555
Q ss_pred HHHHHHHHHhccCCCCcchHHHH
Q 007077 511 MGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
+|+..++++.+++|+++.+...+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555543333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.7e-05 Score=58.43 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA 540 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 540 (619)
+..++..+...|++++|...+++.... .+.+...+..+...+...|++++|.+.++.+....|.++..+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 455677777888888888888877632 2223345777788888889999999999999888888888888889999999
Q ss_pred CChHHHHHHHHHHHh
Q 007077 541 NRWEDVTNVRQKMKE 555 (619)
Q Consensus 541 g~~~~A~~~~~~m~~ 555 (619)
|++++|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999988887764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0027 Score=56.26 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=128.0
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 007077 261 MVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA-LFREMQIIRLKPDKFILVALLTGCAQLGALEQ 339 (619)
Q Consensus 261 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 339 (619)
+-++|...|.......-......+.......+......-++.++-+. +.+.+.......+......-...|+..++++.
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~de 126 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDE 126 (299)
T ss_pred HHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHH
Confidence 34444444544433333322222233333333333333333333333 33444444344443444444556778888888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHh----CCChHHHHHHHHHHH
Q 007077 340 GKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKD-AASWTSIICGLAM----NGKINKALELFSQMI 414 (619)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 414 (619)
|........ +....-.=+..+.+..+.+-|...+++|.+-| -.+.+.|..++.+ .++..+|.-+|++|-
T Consensus 127 Al~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s 200 (299)
T KOG3081|consen 127 ALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS 200 (299)
T ss_pred HHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence 877765421 22222233445677788888888888888753 4556656666543 456888999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhhCC
Q 007077 415 SGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE-AEELIRKIP 485 (619)
Q Consensus 415 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 485 (619)
+. ..|+..+.+....++...|++++|..+++....+. ..++.+...++-+-...|...+ -.+.+.+..
T Consensus 201 ~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 201 EK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 74 47888888888888889999999999999888742 3445666666666656665544 344555555
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.3e-05 Score=60.01 Aligned_cols=96 Identities=15% Similarity=-0.037 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC-CC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE-NN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD---SSFHTLLAN 535 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 535 (619)
+..++..+.+.|++++|.+.|+++... |+ +.....+..+...+...|+++.|...++.+....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444455555555666666555555421 11 1112234445555566666666666666665555553 234555566
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 007077 536 IYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=47.96 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKP 319 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 319 (619)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.2e-05 Score=68.10 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=77.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
-..+.+++.+|...|...+. +.|. ...|..=..+|.+.|.++.|++-.+.... -++....+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-cChHHHHHHHHHHHHHHccCcH
Confidence 45677888888888888874 3444 55566667788888888888888887773 4677777888888888888888
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++|++.|+++++++|++......|-
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHH
Confidence 8888888888888888886444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.6e-06 Score=61.81 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=43.4
Q ss_pred CCHHHHHHHHhhCCCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 472 GLLDEAEELIRKIPNENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 472 g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
|++++|+.+++++..... .++...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455555555555542111 11233344456666666666666666666 5555555555555666677777777776666
Q ss_pred HH
Q 007077 551 QK 552 (619)
Q Consensus 551 ~~ 552 (619)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00032 Score=56.51 Aligned_cols=108 Identities=9% Similarity=-0.011 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCC-cccHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENN-EIIVPLYGALL 500 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~~l~ 500 (619)
++......+...|++++|...|+.+...+.-.| ....+..+..++.+.|++++|.+.++++.. .|. +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566667777777777777765421111 123555677777777788888777777652 222 22234467777
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
.++...|++++|...++++.+..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888888888888888887766443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.4e-05 Score=54.48 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN-RWEDVTNVRQKMKE 555 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 555 (619)
..+|..+...+...|++++|+..|+++.+.+|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3468889999999999999999999999999999999999999999999 79999999998765
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.9e-05 Score=53.41 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=47.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+...+...|++++|+..++++.+..|+++.++..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888888888888888888888888888888653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00056 Score=56.40 Aligned_cols=93 Identities=14% Similarity=0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
.....-+...|++++|..+|+-+.. -++.+..-|..|..+|...+++++|+..|..+..++++||......+.+|...|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~-~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCI-YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344556678999999999987663 244445558899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 007077 542 RWEDVTNVRQKMKE 555 (619)
Q Consensus 542 ~~~~A~~~~~~m~~ 555 (619)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=64.78 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=74.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRA 471 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 471 (619)
..-+.+.+++.+|+..|.+.++. .|. .+-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 34567889999999999999987 554 6677888899999999999999888877 44565 67899999999999
Q ss_pred CCHHHHHHHHhhCC
Q 007077 472 GLLDEAEELIRKIP 485 (619)
Q Consensus 472 g~~~~A~~~~~~~~ 485 (619)
|++++|++.|++..
T Consensus 163 gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 163 GKYEEAIEAYKKAL 176 (304)
T ss_pred CcHHHHHHHHHhhh
Confidence 99999999999887
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0029 Score=59.75 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
|......|...|++++|.+.|.+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 4455666666777777777776653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.1e-05 Score=53.97 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=44.1
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
...|++++|++.++++....|++..++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678889999999999999999888888899999999999999988887765
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.9e-05 Score=45.00 Aligned_cols=31 Identities=42% Similarity=0.877 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhHHCCC
Q 007077 54 LAYNLLIKAFAKKGSFRKSLLLFSKLRERGV 84 (619)
Q Consensus 54 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 84 (619)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00037 Score=68.02 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=76.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
.....+...|++++|++.|++.++. .|+ ...|..+..++...|++++|...++.+... -+.+...|..+..+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHH
Confidence 3456677899999999999999987 555 567888888999999999999999999864 23357788889999999
Q ss_pred cCCHHHHHHHHhhCC
Q 007077 471 AGLLDEAEELIRKIP 485 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~ 485 (619)
.|++++|+..|++..
T Consensus 83 lg~~~eA~~~~~~al 97 (356)
T PLN03088 83 LEEYQTAKAALEKGA 97 (356)
T ss_pred hCCHHHHHHHHHHHH
Confidence 999999999999887
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00028 Score=60.95 Aligned_cols=97 Identities=8% Similarity=-0.214 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
...|..++..+...|++++|+..|++.... ++++ ...+|..+...+...|++++|+..++++..+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456677777888889999999999887522 2222 23468888999999999999999999999999998888888888
Q ss_pred HHH-------hCCChHHHHHHHHHHH
Q 007077 536 IYA-------SANRWEDVTNVRQKMK 554 (619)
Q Consensus 536 ~~~-------~~g~~~~A~~~~~~m~ 554 (619)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887776666543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=54.51 Aligned_cols=47 Identities=11% Similarity=0.313 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 401 GKINKALELFSQMISGGAK-PDDITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555444110 1222333344444455555555555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0004 Score=60.20 Aligned_cols=85 Identities=14% Similarity=-0.064 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
...+..+...+...|++++|...|++.... ++.+ ....+..+...+...|++++|+..++++....|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777888888888888776532 2222 23457888888889999999999999999999998888888888
Q ss_pred HHHhCCC
Q 007077 536 IYASANR 542 (619)
Q Consensus 536 ~~~~~g~ 542 (619)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.6e-05 Score=51.90 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
+...+.+.|++++|.+.|+++... .+.+...|..+..++...|++++|...++++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999988843 455777788899999999999999999999999999875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00096 Score=62.71 Aligned_cols=138 Identities=12% Similarity=0.178 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA-CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367788888888888999999999998553 2233445544444 334577778999999999854 566778999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-CCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 467 LLGRAGLLDEAEELIRKIPNE-NNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+.+.|+.+.|..+|++.... +... ...+|...+.--.+.|+.+...++.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999998843 2223 3458999999999999999999999999999888665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=57.33 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=81.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD--DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 463 (619)
....+..+...+...|++++|...|++.++....|. ...+..+...+.+.|++++|...+++.... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566677777777888888888877776532322 245666667777777777777777777653 1223455556
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
+..+|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A---------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA---------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH---------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322211 122677888888888888887 4455555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0018 Score=66.07 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=22.7
Q ss_pred CChhhHHHHHHHHHh--CC---ChHHHHHHHHHHHHCCCCCCH
Q 007077 385 KDAASWTSIICGLAM--NG---KINKALELFSQMISGGAKPDD 422 (619)
Q Consensus 385 ~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~ 422 (619)
.|...|...+.+... .+ ....|..+|++.++. .|+.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~ 375 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDF 375 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCc
Confidence 356666666665432 22 256788888888877 6764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00047 Score=52.68 Aligned_cols=64 Identities=17% Similarity=0.024 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
.+..+..++...|++++|.+.+++.... .+....++..+...+...|+++.|...++.+.+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444444444444444443311 111112344444555555555555555555554444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.2e-05 Score=43.87 Aligned_cols=31 Identities=32% Similarity=0.720 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRL 317 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 317 (619)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00053 Score=62.23 Aligned_cols=106 Identities=11% Similarity=-0.038 Sum_probs=87.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCcchHH
Q 007077 455 QPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG---NVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
+-|...|..|...|...|+...|..-|.+... -.+.+...+..+..++.... ...++..+++++..++|.|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR-LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 55689999999999999999999999988772 23344445777777654432 467889999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCccc
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEMGVRKV 561 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 561 (619)
.|+..+...|++.+|...++.|.+......
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998655433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.014 Score=55.14 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHc
Q 007077 261 MVSGYVNCGQLEKARDLFD 279 (619)
Q Consensus 261 li~~~~~~g~~~~A~~~~~ 279 (619)
....|-..+++++|.+.|.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~ 59 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYE 59 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHH
Confidence 3445555556655555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.011 Score=49.36 Aligned_cols=135 Identities=8% Similarity=-0.048 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcccHHHHH
Q 007077 419 KPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEIIVPLYG 497 (619)
Q Consensus 419 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~ 497 (619)
.|+...-..+..+....|+..+|...|++...- -+..|....-.+..+....+++..|...++++.. .|..-++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 566666666777777778888887777776652 3445566666777777777788877777776542 22222333356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+...+...|.+..|+..|+.+..--|+... ....+..+.++|+.++|..-+....+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~a-r~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQA-RIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHH-HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6677788888888888888888777776443 55566777888887777765555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.072 Score=50.76 Aligned_cols=112 Identities=16% Similarity=0.275 Sum_probs=88.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSAC 503 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (619)
+.+..+.-|...|+...|.++-... ++ |+...|...+.+|+..|+|++-.++... ...|+. |.-++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIG---yepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIG---YEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCC---hHHHHHHH
Confidence 5566667777888888887775443 44 8899999999999999999998887654 234455 99999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+.|+..+|..+..++ | +..-+..|.+.|+|.+|.+.--+.++
T Consensus 248 ~~~~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHCCCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 9999999999998772 1 35678889999999999887665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.067 Score=50.38 Aligned_cols=193 Identities=10% Similarity=0.046 Sum_probs=113.1
Q ss_pred ccHHHHHHHHHh--cCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCChhhH---
Q 007077 54 LAYNLLIKAFAK--KGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVG--WLGEVKKGEKVHGYVVKTGLEFDTYVC--- 126 (619)
Q Consensus 54 ~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~--- 126 (619)
..|.+|-.++.. .|+-..|.++-.+-.+. +..|......++.+-. -.|+.+.|.+-|+.|.. |+.+-
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllG 156 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLG 156 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHh
Confidence 457777777664 46777777766654432 4456666777776554 56899999999999975 33322
Q ss_pred -HHHHHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhh--HHHHHHHh
Q 007077 127 -NSIMDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGT--VVSTLSAC 200 (619)
Q Consensus 127 -~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~ll~~~ 200 (619)
..|.----+.|+.+.|+..-+.... | -...+.+.+...+..|+|+.|+++++.-+...-+.++..- -..++.+-
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2222233467888888887776553 2 3457888899999999999999999887664445555432 11222221
Q ss_pred --h-cCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC
Q 007077 201 --T-ALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN 252 (619)
Q Consensus 201 --~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 252 (619)
. -..+...|...-....+.-|.-...-..-...+.+.|+..++-.+++.+-+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 237 AMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 1 112334444443333333221122223334556666666666666655533
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.073 Score=50.14 Aligned_cols=286 Identities=16% Similarity=0.118 Sum_probs=169.7
Q ss_pred CChHHHHHHHHHHHHhccCChhHHHHHHHH--HHhcCChhhHHHHhccCCC-CCchh--HHHHHHHHHhcCCHHHHHHHH
Q 007077 204 KNLELGKEIHRYINQELEFTPIMGNALLDM--YCKCGCLSEARELFDEMPN-KNVIC--WTSMVSGYVNCGQLEKARDLF 278 (619)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~~~A~~~~ 278 (619)
|+-..|+++-....+.+..|..-.-.|+.+ -.-.|+++.|.+-|+.|.. |.... ...|.-.-.+.|..+.|...-
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yA 177 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYA 177 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHH
Confidence 444555554444444433443333333332 2345777777777777765 32221 222222233567777776665
Q ss_pred ccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---ccCcHHHHHHHHHHHHH
Q 007077 279 DRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIR-LKPDKF--ILVALLTGCA---QLGALEQGKWIHGYINE 349 (619)
Q Consensus 279 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~---~~~~~~~a~~~~~~~~~ 349 (619)
++.- +.-...+.+.+...|..|+|+.|+++++.-+... +.++.. .-..|+.+-+ -..+...|...-.+..+
T Consensus 178 e~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K 257 (531)
T COG3898 178 ERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK 257 (531)
T ss_pred HHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 5433 2234677888888999999999999988765543 445443 2223333221 12345555555554444
Q ss_pred cCCCCChh-HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCH-HHHH
Q 007077 350 NRITVDAV-VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMIS-GGAKPDD-ITFI 426 (619)
Q Consensus 350 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~~~~ 426 (619)
. .|+.. .-..-..++.+.|++.++-.+++.+-+..+..--..+..+.+.|+ .++.-+++... ..++||. .+..
T Consensus 258 L--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~ 333 (531)
T COG3898 258 L--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAESSL 333 (531)
T ss_pred c--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHH
Confidence 3 34332 222345678899999999999998875433332233333444444 44444444332 1236664 5777
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR-AGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
.+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+....|..|. |...
T Consensus 334 ~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa---W~ad 401 (531)
T COG3898 334 AVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA---WTAD 401 (531)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc---cccc
Confidence 77788888899988887776665 457888888888887654 4999999999988887777777 6554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00029 Score=50.86 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
..+.+.+++++|.++++++..++|+++..+...+.+|...|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577889999999999999999999999899999999999999999999988876443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=55.66 Aligned_cols=114 Identities=9% Similarity=-0.024 Sum_probs=51.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
..+...+...|++++|...|+.......-++ ...++..+..+|...|++++|++.+++.... .+.....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHH
Confidence 3333344444555555555444433211001 1124444555555555555555555544421 1222223444444444
Q ss_pred -------HcCCHH-------HHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 505 -------IYGNVD-------MGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 505 -------~~g~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
..|+++ +|...++++.+.+|++. ......+...|++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 555555 55556666677777654 2333334444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.12 Score=51.71 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=128.1
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA 431 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 431 (619)
+...|...++.-.+.|+.+.+.-+|++..-+ -...|--.+.-....|+.+-|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4467888888889999999999999988755 3445666666556669999998888777665433333333333334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHhhCCCCC--CcccHHHHHHHHH-HHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAE---ELIRKIPNEN--NEIIVPLYGALLS-ACR 504 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~--~~~~~~~~~~l~~-~~~ 504 (619)
+-..|+.+.|..+++.+... . |+ +..-..-+....+.|..+.+. +++....... .......+.-... .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999875 3 66 333444456677889988888 5655544211 1111111222222 245
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
..++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999988777663
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=51.86 Aligned_cols=92 Identities=16% Similarity=-0.015 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHH
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPNENNEI--IVPLYGALLSACRIYGNVDMGEKLAALLEKIESK---DSSFHTLLANIY 537 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 537 (619)
.+..++-..|+.++|+.+|++....+... ....+-.+.+.+...|++++|..++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34556667777778887777766433222 2334556777778888888888888888777776 555555666777
Q ss_pred HhCCChHHHHHHHHHHH
Q 007077 538 ASANRWEDVTNVRQKMK 554 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~ 554 (619)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78888888887765543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.14 Score=51.89 Aligned_cols=246 Identities=15% Similarity=0.122 Sum_probs=143.4
Q ss_pred hhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHC-CCCCCcccHHH-----H--HHHHhccCChhHHHH
Q 007077 38 LLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRER-GVSPDNFTYPF-----V--FKAVGWLGEVKKGEK 109 (619)
Q Consensus 38 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~-----l--l~~~~~~~~~~~a~~ 109 (619)
+++|.+..+.- |.+..|..+...-...-.++-|...|-+.... |++.-.. ... + ....+--|++++|++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 45555555444 44566777766666665666666666554331 2211000 000 0 111223467888888
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC-----CeecHHHHHHHHHcCCChhHHHHHHHHhHhcC
Q 007077 110 VHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK-----DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGC 184 (619)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 184 (619)
++-.+-++. .-|..+.+.||+-...++++.-... -..+|+.+...++....|++|.+.|..-..
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 776665532 2356677778888777777654321 124788888888888888888888876432
Q ss_pred CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHH
Q 007077 185 NLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSG 264 (619)
Q Consensus 185 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 264 (619)
. ...+.++.+...++. ++.+...+|.+....-.+.+++.+.|.-++|.+.|-+-..|. .-+..
T Consensus 825 --~------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~t 887 (1189)
T KOG2041|consen 825 --T------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHT 887 (1189)
T ss_pred --h------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHH
Confidence 1 112233333333322 223334477788888888899999999999988776554432 34556
Q ss_pred HHhcCCHHHHHHHHccCCCCChhhHHH--------------HHHHHHHcCChhHHHHHHHHHHH
Q 007077 265 YVNCGQLEKARDLFDRSPVRDIVLWTA--------------MINGYVQFNRFDEAVALFREMQI 314 (619)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 314 (619)
+...++|.+|.++-++..-|.+.+.-+ -|..+.+.|++-+|.+++.+|.+
T Consensus 888 Cv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 677788888888887766554433211 13345556666666666666643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0053 Score=62.74 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHh
Q 007077 417 GAKPDDITFIGVLSACSH-----GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRA--------GLLDEAEELIR 482 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 482 (619)
+.+.+...|...+++... .+....|..+|++..+. .|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345667788888877532 23477999999999854 677 34444444433321 23455666666
Q ss_pred hCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 483 KIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 483 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
+.... .++.+..+|.++.-.....|++++|...++++.+++|. ...|..++.++...|+.++|.+.+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 54432 24445566888877777889999999999999999995 67799999999999999999999999876544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=51.97 Aligned_cols=50 Identities=24% Similarity=0.241 Sum_probs=25.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
..|++++|.++|+.+...+ +-+...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555431 2234444455555555555555555555554
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.031 Score=46.81 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD---DITFI 426 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~ 426 (619)
|++..--.|..+....|+..+|...|++... .|......+.++....+++..|...++++.+.. |+ ..+..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchH
Confidence 3444344455555555555555555554432 244455555555555555555555555555431 21 11333
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (619)
.+.+.+...|...+|..-|+..... -|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 3445555556666666666555533 345444444445555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=61.53 Aligned_cols=260 Identities=11% Similarity=0.030 Sum_probs=148.8
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCcHHHHHHHHHHHH--H--cCC-CCChhHHHHHHHHH
Q 007077 295 GYVQFNRFDEAVALFREMQIIRLK---PDKFILVALLTGCAQLGALEQGKWIHGYIN--E--NRI-TVDAVVATALIEMY 366 (619)
Q Consensus 295 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~-~~~~~~~~~l~~~~ 366 (619)
-+|+.|+....+.+|+...+.|-. .=..+|+.|.++|.-.+++++|.+++..=+ . .|- .........|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 367777777777777777776622 112346666677777777777777665311 0 110 01122223344445
Q ss_pred HhCCCHHHHHHHHHhcCC-------C--ChhhHHHHHHHHHhCCC--------------------hHHHHHHHHHHH---
Q 007077 367 AKCGLIEKALEIFYELRE-------K--DAASWTSIICGLAMNGK--------------------INKALELFSQMI--- 414 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~--- 414 (619)
--.|.+++|+..-.+-.. + ....+..+...|...|+ ++.|.+.|.+-+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666554332221 1 23344455555554432 233444444322
Q ss_pred -HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 007077 415 -SGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTM---TEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIP--- 485 (619)
Q Consensus 415 -~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 485 (619)
..|-.. .-..|..+...|.-.|+++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.++...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 112111 1135556666666678898888766542 22233222 24567778888888999999998887543
Q ss_pred --CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 486 --NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK----IE--SKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 486 --~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...........-+|...|.-...++.|+.++.+-.. +. -....++..|+++|...|.-++|+.+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 111222333455677777777788888887765432 22 2345567889999999999999988877664
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.01 Score=48.94 Aligned_cols=94 Identities=7% Similarity=-0.031 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
....-.+..-+...|++++|..+|+-+... .|.. .-|..+..+|-..|++++|+..|...... . +.|+..+..+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHH
Confidence 333334444444555555555555554443 3332 23333334444445555555555554432 1 12244444455
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 007077 466 DLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~ 484 (619)
.++...|+.+.|.+.|+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555544433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0026 Score=62.27 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
..++++.|...|..++++.+++.=...|+-||..+++.+++.+.+.|++..|.++...|..
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.036 Score=55.49 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=145.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHH---------HHHhHHCCCCCCcccHHHHHHHHhccCChhHH--HHHHHHHHHhCCC
Q 007077 52 CLLAYNLLIKAFAKKGSFRKSLLL---------FSKLRERGVSPDNFTYPFVFKAVGWLGEVKKG--EKVHGYVVKTGLE 120 (619)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~g~~ 120 (619)
-.+.+.+-+-.|...|.+++|.++ ++.+... ..++-.++..=.+|.+.++..-- ..-++.+.++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334455556667777777777654 1221111 12334455555666666655433 2334566677777
Q ss_pred CChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHh
Q 007077 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSAC 200 (619)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 200 (619)
|+... +...++-.|++.+|.++|.+ +|.-..|+++|.+|+- . ....-+
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-F----------D~aQE~ 680 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-F----------DYAQEF 680 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-H----------HHHHHH
Confidence 77654 34456677889998888764 5667777777777643 1 112223
Q ss_pred hcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHcc
Q 007077 201 TALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDR 280 (619)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 280 (619)
...|..++-+.+.+.-..- ..+..--.+...++...|+.++|..+. ...|-.+-+.++-++
T Consensus 681 ~~~g~~~eKKmL~RKRA~W-Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rk 741 (1081)
T KOG1538|consen 681 LGSGDPKEKKMLIRKRADW-ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARK 741 (1081)
T ss_pred hhcCChHHHHHHHHHHHHH-hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhh
Confidence 3444444433333322111 011111133445566677777766533 234444555555555
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHH
Q 007077 281 SPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVAT 360 (619)
Q Consensus 281 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (619)
+...+..+...+...+.+...+.-|.++|..|-+ ...+++.....+++.+|..+-+...+. .++ +|.
T Consensus 742 ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~ 808 (1081)
T KOG1538|consen 742 LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYM 808 (1081)
T ss_pred cchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--ccc--ccc
Confidence 5555555555555555566666667777766632 123445555566666665554443221 122 222
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
....-++...++++|.+ +|.+.|+-.+|..+++++...
T Consensus 809 pyaqwLAE~DrFeEAqk------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQK------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHhhhhhhHHHHHH------------------HHHHhcchHHHHHHHHHhhhh
Confidence 23333444444444443 334556666666666665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00033 Score=49.89 Aligned_cols=66 Identities=18% Similarity=0.045 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG-NVDMGEKLAALLEKIES 524 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 524 (619)
...|..+...+...|++++|+..|++.... ++.+...|..+..++...| ++++|++.++++.+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777778888888888888888877632 4445666888888888888 68888888888888877
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.014 Score=51.57 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC-----ChhHHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITV-----DAVVATA 361 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 361 (619)
...+.++..+...|.+.-.+..+++.++...+.+....+.+.+.-.+.||.+.|...++.+.+..-.. ...+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44567777778888999999999999887767777888888888899999999999999877643233 3333334
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFI 426 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 426 (619)
....|.-.+++..|...|.++... |+..-|.-.-+..-.|+...|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 444566778888888888877643 5666666666667788889999999998877 55554433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.27 Score=50.59 Aligned_cols=336 Identities=11% Similarity=0.081 Sum_probs=185.6
Q ss_pred CCCCCChhhHHH-----HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC---hhhHHHHhccCCC--C
Q 007077 184 CNLMPDEGTVVS-----TLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC---LSEARELFDEMPN--K 253 (619)
Q Consensus 184 ~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~ 253 (619)
.|++.+..-|.. ++..+...+.+..|.++-..+.........++.....-+.+..+ -+.+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 455555444433 44555666777777777666655422225666666666666532 2223333334433 4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCC--------ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 007077 254 NVICWTSMVSGYVNCGQLEKARDLFDRSPVR--------DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILV 325 (619)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 325 (619)
..++|..+...-..+|+.+-|..+++.=+.. +..-+..-+.-....|+.+-...++-.+.+.- +...|.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH
Confidence 5556777777777888888888777643321 12233444455556666666666666554321 111111
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHh-c------CCCChhhHHHHHHHHH
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYE-L------REKDAASWTSIICGLA 398 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~l~~~~~ 398 (619)
.. ..+...|..+|.+..+..-. ..+-+.|-...+ ..+...|.. - .+.-........+.+.
T Consensus 583 ~~------l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn-~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 583 MT------LRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDN-HQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred HH------HHhchhhhHHHHHHHHhhch------hhhhhhhhcccc-hhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 11 11222333444443331100 011122222222 222221111 0 0111222233334444
Q ss_pred hCCCh----------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 399 MNGKI----------NKALELFSQMIS-GGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 399 ~~g~~----------~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
+.... .+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~a 724 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHH
Confidence 43331 112222222221 2323333455666677778899999988876653 4888899989999
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
++..+++++-+++-+.... |.. |.-+..+|.+.|+.++|.+++-+.-. +...+.+|.+.|++.+|.
T Consensus 725 La~~~kweeLekfAkskks---PIG---y~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKKS---PIG---YLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAA 790 (829)
T ss_pred HHhhhhHHHHHHHHhccCC---CCC---chhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHH
Confidence 9999999998888777652 444 88889999999999999999765532 226788999999999998
Q ss_pred HHHHHHH
Q 007077 548 NVRQKMK 554 (619)
Q Consensus 548 ~~~~~m~ 554 (619)
+.--+-+
T Consensus 791 d~A~~~r 797 (829)
T KOG2280|consen 791 DLAAEHR 797 (829)
T ss_pred HHHHHhc
Confidence 7765544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.18 Score=48.49 Aligned_cols=141 Identities=10% Similarity=0.083 Sum_probs=105.3
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 007077 385 KDAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGC 463 (619)
Q Consensus 385 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 463 (619)
+-..+|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...+ +.+..--+-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHH
Confidence 446678888888888888999999999999988 5677778888887665 477888889998766543 233333455
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+..+.+-++-+.|..+|+....+ .......+|..++.--..-|+...+..+-+++.++.|....
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 667778889999999999865521 01122445889998888899999999888888888887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.18 Score=48.49 Aligned_cols=83 Identities=12% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHH
Q 007077 16 LQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCL---LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYP 92 (619)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 92 (619)
-|.|...|-.|++.|. ..|..++.+++++++..|-+ .+|..-|++=....+++....+|.+.+.... +...|.
T Consensus 38 NPtnI~S~fqLiq~~~--tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 38 NPTNILSYFQLIQYLE--TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred CchhHHHHHHHHHHHh--hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 3567788889999888 88899999999998876644 4677778777777888888889888877533 455566
Q ss_pred HHHHHHhccC
Q 007077 93 FVFKAVGWLG 102 (619)
Q Consensus 93 ~ll~~~~~~~ 102 (619)
..+.-..+.+
T Consensus 114 lYl~YIRr~n 123 (660)
T COG5107 114 LYLEYIRRVN 123 (660)
T ss_pred HHHHHHHhhC
Confidence 6665544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00017 Score=42.41 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=30.8
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 516 AALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
|+++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0048 Score=46.96 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGA-KPDDITFIGVLSACSHG--------GLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++. +.+-....+|+.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666777999999999999999999 89999999999887653 2355678899999877 89999999
Q ss_pred HHHHHHHHHh
Q 007077 461 YGCLIDLLGR 470 (619)
Q Consensus 461 ~~~l~~~~~~ 470 (619)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0028 Score=61.97 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCC-C-----CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCc
Q 007077 15 GLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQS-P-----CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDN 88 (619)
Q Consensus 15 g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 88 (619)
+.+-++.....++..+. ...+++.+..++.+... | -..+..++|+.|...|..+.++.++..=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~--~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVE--SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcC--CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 34445555555555555 45555666665554431 1 1223456666666666666666666666666666677
Q ss_pred ccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhc
Q 007077 89 FTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVL 136 (619)
Q Consensus 89 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 136 (619)
++++.++..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777776666677766666666666555555555554444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.09 Score=52.78 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 442 (619)
..++...|+.++|..+. ..+|-.+-+.++-+++-. .+..+...+..-+-+...+.-|-
T Consensus 710 AEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHH
Confidence 44455566666665442 334445555555444432 23345555555555666677777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
++|.+|-. ...+++.....|++.+|..+-++.++
T Consensus 768 eIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 768 EIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc
Confidence 77777643 23467777788888888888877763
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0054 Score=46.72 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------cHHHHHHHHHHHHHcCCCCChhH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRL-KPDKFILVALLTGCAQLG--------ALEQGKWIHGYINENRITVDAVV 358 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 358 (619)
+....|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 999999999999887653 23456778899999999999999
Q ss_pred HHHHHHHHHh
Q 007077 359 ATALIEMYAK 368 (619)
Q Consensus 359 ~~~l~~~~~~ 368 (619)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.015 Score=46.20 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=62.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC---ChhHHHHHHHH
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITV---DAVVATALIEM 365 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 365 (619)
.+..++-..|+.++|+.+|++....|+..+. ..+..+...+...|++++|..+++...... +. +..+...+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 3455677788888888888888887766543 245566667777788888877777766542 11 22222333345
Q ss_pred HHhCCCHHHHHHHHHhcCCCChhhHHHHH
Q 007077 366 YAKCGLIEKALEIFYELREKDAASWTSII 394 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 394 (619)
+...|+.++|++.+-....++...|.--|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666766666666544433333333333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.034 Score=49.28 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CCCCChhHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY----QIQPKLEHYGC 463 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~ 463 (619)
..-++++..+.-.|.+.-.+..+.+.++...+.+......+.+.-.+.|+.+.|...|+...+.. ++.-..-+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777888898999999999987545556677778888889999999999999776542 22222333334
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
....|.-++++.+|...+.+++.. ++.++...|.-.-+..-.|+...|.+..+.+.+..|.....-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 445567788999999999888843 444444566655556667899999999999999999865543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0084 Score=56.40 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=60.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-CCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAK-CGLIEKALEIFYELRE---KDAASWTSIICGLA 398 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 398 (619)
+|..+++.+-+.+..+.|+.+|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+...+ .+...|...+.-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34444455555555555555555554322 2233333333333222 3344445666555442 24555555555555
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 399 MNGKINKALELFSQMISGGAKPDDI----TFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
..++.+.|..+|++.+.. .|... .|...+.--.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666665544 22222 555555555555666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.01 Score=54.71 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=65.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCCcccHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPN--ENNEIIVPLYG 497 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~ 497 (619)
.|........+.|++++|...|+.+.+.+ |+ ...+..+...|...|++++|...|+.+.. ...+.....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444455677777777777777653 33 24556677777777777777777777652 12222333455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.++..+...|+.+.|...++.+.+..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5566666778888888888887777777664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0025 Score=61.78 Aligned_cols=68 Identities=7% Similarity=-0.188 Sum_probs=54.8
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 489 NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS---FHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.+...|+.+..+|...|++++|+..|+++++++|++.. +|..++.+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555666888888888888888888888888888888874 3888888888888888888888888764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0058 Score=56.39 Aligned_cols=98 Identities=14% Similarity=-0.006 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHH
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLL 533 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 533 (619)
..|..-+..+.+.|++++|+..|+.... .|+.+ ....+-.+...+...|++++|...|+.+.+..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555666778999999999998873 23322 234577788889999999999999999998888854 445667
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 007077 534 ANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+.++...|++++|.+.+++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999998764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.033 Score=50.99 Aligned_cols=174 Identities=12% Similarity=0.075 Sum_probs=105.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hh---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKDA---AS---WTSIICGLAMNGKINKALELFSQMISGGAKPDD--ITFIGVLS 430 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 430 (619)
.-.....+...|++++|.+.|+.+....+ .. .-.++.++.+.+++++|...+++.++. .|+. ..+...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHH
Confidence 33445556677888888888888764321 11 234566778888888888888888876 3432 23333333
Q ss_pred HHhc--cC---------------c---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc
Q 007077 431 ACSH--GG---------------L---VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE 490 (619)
Q Consensus 431 ~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 490 (619)
+.+. .+ + ...|...|+.+++.+ |+ +....+|...+..+... ..
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~-la 175 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDR-LA 175 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHH-HH
Confidence 3221 10 1 233445555555432 33 22334444433333211 00
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 491 IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS---FHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
-. -..+..-|.+.|.+.-|..-++.+.+--|+.+. +...++.+|...|..++|..+.....
T Consensus 176 ~~---e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KY---ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH---HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 124455688899999999999999888887554 45678889999999999988877654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.31 Score=49.68 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=99.6
Q ss_pred CChhhHHHHHHHhHhcCChhHHHHHHccCCC-CCeec------------HHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 007077 121 FDTYVCNSIMDMYGVLGKICNVKKLFDEMPD-KDVVS------------WNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187 (619)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 187 (619)
|.+..|..|...-...-.++.|...|-+... +.+.. -.+=|.+ --|++++|.++|-+|.+ ..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~dr-rD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADR-RD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccch-hh--
Confidence 6667777777666666667777777665543 11111 1111222 24778888888777744 21
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHH
Q 007077 188 PDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGY 265 (619)
Q Consensus 188 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 265 (619)
..+....+.|++-...++++.--.. ...-...++.+.+.+.....+++|.+.|..-.. -...+.++
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecl 832 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECL 832 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHH
Confidence 1223333444444443333221110 111123445555555555556666655544321 12234444
Q ss_pred HhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 007077 266 VNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHG 345 (619)
Q Consensus 266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 345 (619)
....++++-+.+-+.++. |......+..++.+.|.-++|.+.|-+- + .| ...+..|...+++.+|.++-+
T Consensus 833 y~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433 4455566777777777777777766432 1 12 123455666666666655543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0011 Score=41.85 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
+|..+...+...|++++|++.++++.+..|+++.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 58889999999999999999999999999999998887764
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.12 Score=49.86 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREK-------DAASWTSIICGLAM---NGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
.++-.|-...+++.-.++.+.+... ....-...+-++.+ .|+.++|+.++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566666666666666666543 11112223344445 6777777777777555555666667666665
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH----HHHHH---h----hCCCCCCc
Q 007077 431 ACSH---------GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE----AEELI---R----KIPNENNE 490 (619)
Q Consensus 431 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~----~~~~~~~~ 490 (619)
.|-. ....++|...|.+.- .+.|+..+--.++-.+...|...+ ..++- . +-......
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 223566666666543 444554333333334444443221 11111 1 11112233
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 491 IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.+-+.+.+++.++.-.|+++.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 455556788888888899999999999888887554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.032 Score=51.00 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHh
Q 007077 407 LELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---GLLDEAEELIR 482 (619)
Q Consensus 407 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~ 482 (619)
..-++.-+.. .| |...|..+..+|...|+.+.|..-|....+.. .++...+..+..++..+ ....++.++|+
T Consensus 142 ~a~Le~~L~~--nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 142 IARLETHLQQ--NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHh--CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3333443444 44 45688888888888888888888888877532 34466666666665533 25667888888
Q ss_pred hCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 483 KIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++. ..++.++.....|...+...|++.+|...++.+.+..|.+.. +..++
T Consensus 218 ~al-~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~-rr~~i 267 (287)
T COG4235 218 QAL-ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP-RRSLI 267 (287)
T ss_pred HHH-hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc-hHHHH
Confidence 888 346667667777888888999999999999999988887766 44333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0025 Score=45.84 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=51.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
..|.+.+++++|.+.++++... +|.+...|......+...|++++|.+.++++.+..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888899999988888733 3445555888888889999999999999999999998876443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0045 Score=58.22 Aligned_cols=128 Identities=15% Similarity=0.036 Sum_probs=85.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHH----HcCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CC--Chh
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYIN----ENRIT-VDAVVATALIEMYAKCGLIEKALEIFYELR-------EK--DAA 388 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 388 (619)
.|..|.+.|.-.|+++.|+..++.-+ +.|-. .....+..|.+++.-.|+++.|.+.|+... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666667788888887776543 22211 123456678888888899998888887643 22 345
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMIS----GGAK-PDDITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
++.+|.+.|.-..++++|+..+.+-+. .+-. -...++.++..++...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 667788888888888888888876432 1111 1234778888888888888888877665543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.62 Score=48.12 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG 436 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 436 (619)
.+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+++++-.++-+.+. .+.-|..+..+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3444455556677888888888888887888888777888888888877666554432 2456667777888888
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRK 483 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (619)
+.++|.+++-+.. +. .-.+.+|.+.|++.+|.++--+
T Consensus 759 n~~EA~KYiprv~------~l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVG------GL----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccC------Ch----HHHHHHHHHhccHHHHHHHHHH
Confidence 8888888765442 11 1466777888888887776544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0074 Score=57.17 Aligned_cols=84 Identities=6% Similarity=-0.037 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEE
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIH 574 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 574 (619)
+++.+..+|.+.+.+..|++...++++++|+|.-+...-+.+|...|+++.|...|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------- 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------- 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-------------------
Confidence 3777778888899999999999999999999999899999999999999999999998876
Q ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 575 EFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
..|.+.++...|..+...+++..
T Consensus 320 -------~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 320 -------LEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred -------hCCCcHHHHHHHHHHHHHHHHHH
Confidence 36666777777777766665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.36 Score=44.30 Aligned_cols=60 Identities=8% Similarity=-0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDKFI--LVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
.....+...|++++|++.|+++...-..+.... .-.+..++.+.++++.|...++..++.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344455566777777777777665322221111 123344555666666666666655554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.015 Score=50.32 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=67.1
Q ss_pred HHHHhc--CCCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 007077 377 EIFYEL--REKDAASWTSIICGLAM-----NGKINKALELFSQMISGGAKPDDITFIGVLSACSHG-------------- 435 (619)
Q Consensus 377 ~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 435 (619)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 445544 35567777777777764 467777888888999999999999999999987542
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 436 --GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 436 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
.+-+-|++++++|... |+-||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 2234566677776554 777777777777776665553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.17 Score=48.16 Aligned_cols=86 Identities=16% Similarity=0.040 Sum_probs=42.8
Q ss_pred HHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 007077 397 LAMNGKINKALELFSQMISG---GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAG 472 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 472 (619)
..+.|++..|.+.|.+.+.. ...|+...|.....+..+.|+..+|+.-.+.... +.|. +..|..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666543 1223333444444555566666666665555442 2222 222222233444455
Q ss_pred CHHHHHHHHhhCC
Q 007077 473 LLDEAEELIRKIP 485 (619)
Q Consensus 473 ~~~~A~~~~~~~~ 485 (619)
+|++|.+-+++..
T Consensus 336 ~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 336 KWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0046 Score=51.89 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCcccC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK-----EMGVRKVP 562 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 562 (619)
...++..+...|++++|...++.+...+|-+..+|..++.+|...|+..+|.++++++. +.|+.|++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 56677778899999999999999999999999999999999999999999999999885 34666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0023 Score=46.77 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKI----ESK---DSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+++.+...|...|++++|+..++++.++ .++ -..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345777788888888888888888877543 222 244578888899999999999998887653
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.013 Score=50.75 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=71.2
Q ss_pred HHHccC--CCCChhhHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------------
Q 007077 276 DLFDRS--PVRDIVLWTAMINGYVQ-----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQL-------------- 334 (619)
Q Consensus 276 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 334 (619)
+.|+.. ..++..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 35566777777777764 366666777788888888888989999888877542
Q ss_pred --CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 335 --GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 335 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
.+-+.|..++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788889999999999999988888888866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.59 Score=44.67 Aligned_cols=107 Identities=19% Similarity=0.278 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 007077 257 CWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGA 336 (619)
Q Consensus 257 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 336 (619)
+.+..|.-+...|+...|.++-.....||...|-..+.+++..++|++-.++-.. . -+++-|-.++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence 4555566677788888888888888888888888888888888888876665432 1 123667778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIF 379 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 379 (619)
..+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88777776551 1245677788888888876653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.68 Score=44.94 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 495 LYGALLSA--CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 495 ~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.-|.|.++ +..+|++.++.-.-.=+.++.| ++.+|..++-++....++++|..++.+++
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 45566555 5678999999888888889999 78889999999999999999999998775
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.08 Score=47.18 Aligned_cols=49 Identities=8% Similarity=-0.075 Sum_probs=38.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhCCChHHHH
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSF---HTLLANIYASANRWEDVT 547 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 547 (619)
+..-|.+.|.+..|..-++.+++.-|+.+.. ...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4566888999999999999999999987654 467788899999888554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.72 Score=44.78 Aligned_cols=119 Identities=21% Similarity=0.144 Sum_probs=77.6
Q ss_pred HHhCCC-HHHHHHHHHhcCC---CChhhHHHHH----HHHHh---CCChHHHHHHHHHHHHCCCCCCHH----HHHHHHH
Q 007077 366 YAKCGL-IEKALEIFYELRE---KDAASWTSII----CGLAM---NGKINKALELFSQMISGGAKPDDI----TFIGVLS 430 (619)
Q Consensus 366 ~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~ 430 (619)
+-+.|. -++|+++++.+.+ -|...-|... ..|.+ ......-+.+-+-..+.|+.|-.+ .-+.+.+
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 344454 7788888887653 2444333322 22322 233444555555566778877543 3344443
Q ss_pred H--HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007077 431 A--CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE 487 (619)
Q Consensus 431 ~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 487 (619)
| +...|++.++.-.-.-+. .+.|++.+|..+.-++....++++|..++..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 3 456899998876654444 67899999999999999999999999999998843
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.52 Score=42.33 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=85.2
Q ss_pred HHHhCCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---
Q 007077 365 MYAKCGLIEKALEIFYELREK------DAASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDITFIGVLSACSH--- 434 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~--- 434 (619)
.-.+.|++++|.+.|+.+... ...+--.++.++-+.++++.|+..+++....- -.|| ..|...|.+.+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcc
Confidence 345668888888888877643 22344455667778888888888888877652 2233 333333333321
Q ss_pred ----cCc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 435 ----GGL---VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 435 ----~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
..+ ...|..-|+.++.++ |+.. -..+|...+..+... .. ..=..+..-|.+.|
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~d~---LA-~~Em~IaryY~kr~ 181 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLNDA---LA-GHEMAIARYYLKRG 181 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHHHH---HH-HHHHHHHHHHHHhc
Confidence 112 234444455555442 3321 111111111111100 00 00112344466666
Q ss_pred CHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESKDSSF---HTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.+..|..-++.+.+--|+.+.. +..|..+|...|..++|...-+-+.
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 6666666666666555554433 3445556666666666665555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.036 Score=52.67 Aligned_cols=140 Identities=16% Similarity=0.013 Sum_probs=102.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 007077 393 IICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472 (619)
Q Consensus 393 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 472 (619)
-.+.|.+.|++..|...|++.+.. -+ +...-+.++..... . .-..++..+.-+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 346778888888888888886653 11 01111112222221 1 12336777899999999
Q ss_pred CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHH-HHHHH
Q 007077 473 LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDV-TNVRQ 551 (619)
Q Consensus 473 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~ 551 (619)
++.+|++.-++... -++.++...---..+|...|+++.|+..|+++.+++|.|..+...++.+-.+..++++. .++|.
T Consensus 272 ~~~~Ai~~c~kvLe-~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 272 EYKEAIESCNKVLE-LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998883 46666555666678899999999999999999999999999888888887777766654 77888
Q ss_pred HHHh
Q 007077 552 KMKE 555 (619)
Q Consensus 552 ~m~~ 555 (619)
.|-.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 8864
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0048 Score=45.08 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIP-----NENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
+|+.+..+|...|++++|++.|++.. ..+..+ ...++..+...+...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555566666666666666555443 111222 245566677777777777777777776654
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.64 Score=41.39 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=32.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKP--DKFILVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
.....+...|++.+|+..|+.+...-... -....-.+..++.+.|+++.|...++.+++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666777777777777776542111 1123344555566666666666666665554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.079 Score=51.80 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 475 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.+|.++.++.. +-++.+......+..+....|+++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAv-eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVS-DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHH-hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433 1233333334444444444445555555555555555555555555555555555555555555553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.077 Score=42.59 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 417 GAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
...|+..++.+++.+|+..|++..|.++.+.+.+.++++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888777777787777643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.29 Score=40.77 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=68.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCcccHHHHHHHHHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP--NENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 505 (619)
...-+...|++++|..+|.-+... + .-+..-|..|..++...|++++|+..|.... ...++.. +-....++..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p---~f~agqC~l~ 117 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP---VFFTGQCQLL 117 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc---cchHHHHHHH
Confidence 334456789999999999988753 1 2345567888889999999999999997543 2222222 4566778889
Q ss_pred cCCHHHHHHHHHHHhccCCCC
Q 007077 506 YGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.|+.+.|+..|+.+.+ .|.+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred hCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999887 3443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.64 Score=46.69 Aligned_cols=130 Identities=14% Similarity=0.146 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHH
Q 007077 227 GNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAV 306 (619)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 306 (619)
.+.++..+-+.|..+.|+++-..- ..-.....++|+++.|.++.+... +...|..|.....+.|+++-|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666666654321 233444556677777766666554 5567888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 307 ALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 307 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
+.|++..+ +..|+-.|...|+.+.-.++.......|- ++....++.-.|++++..+++.+
T Consensus 368 ~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 368 ECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88876543 44555566667777776666666665541 34444455555666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.096 Score=48.30 Aligned_cols=159 Identities=14% Similarity=0.039 Sum_probs=117.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCC
Q 007077 398 AMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCL----IDLLGRAGL 473 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~ 473 (619)
--.|+..+|-..++++++. .+.|..++...=++|...|+...-...++++.. ...||...|..+ ..++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578889999999999887 244566777777899999999999999888875 346776555443 445568999
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChHHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
+++|++.-++...- ++.+...-.++...+...|+..++.++..+-...-.. -.+.|-..+-.+.+.+.++.|+++
T Consensus 191 y~dAEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999988843 4555545566677778889999999998776544332 234466677778888999999999
Q ss_pred HHHHHhCCCcc
Q 007077 550 RQKMKEMGVRK 560 (619)
Q Consensus 550 ~~~m~~~~~~~ 560 (619)
++.-.-....+
T Consensus 270 yD~ei~k~l~k 280 (491)
T KOG2610|consen 270 YDREIWKRLEK 280 (491)
T ss_pred HHHHHHHHhhc
Confidence 98765433333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.3 Score=40.27 Aligned_cols=196 Identities=22% Similarity=0.165 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34445555556666666666665555432 2344455555556666666667776666665432221 11111222
Q ss_pred -HHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 431 -ACSHGGLVDEGRRFFNTMTEVYQIQP----KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 431 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
.+...|+++.+...++.... ..| ....+......+...++.++|...+.+............+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56666777777777766633 122 2233333334455667777777777666532211133446666667777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 506 YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.++++.+...+..+....|.....+..++..+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777555556666666666667777777776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.3 Score=43.09 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=86.3
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChh-hHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEG-TVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALL 231 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 231 (619)
+...|+++|.---.....+.+...+..+.. --|-.. .|......-.+.|..+.+.++|+..+..+|.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~---kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS---KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 556788888765555566667777777753 234443 3444444456778889999999999888888888887766
Q ss_pred HHHH-hcCChhhHHHHhccCCC------CCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhH
Q 007077 232 DMYC-KCGCLSEARELFDEMPN------KNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLW 289 (619)
Q Consensus 232 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 289 (619)
..+. ..|+.+...+.|+...+ .....|...|.--..++++.....++++...-....+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~ 185 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL 185 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh
Confidence 6554 35666676777766554 2444566666666666666666666666554333333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.29 Score=39.80 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=39.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC--CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 466 DLLGRAGLLDEAEELIRKIPNE--NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
....+.|++++|.+.|+.+..+ ..+.....-..++.++.+.|++++|...+++.+++.|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3344567777777777666521 12223334556677777777777777777777777777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.35 Score=44.75 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=120.2
Q ss_pred HHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHH--HHHHhccCcH
Q 007077 366 YAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI--TFIGV--LSACSHGGLV 438 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l--l~~~~~~g~~ 438 (619)
....|+..+|...++++.+. |..+++--=.+|.-.|+.+.-...+++.... ..||.. +|..- .-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888753 7778888889999999999999999988754 245543 33222 2344678999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC---cccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENN---EIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
++|.+.-++..+.+ +.|.-.-.+....+.-.|++.++.++..+-...=. .....-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999888776431 23344455677888889999999999887652211 11111122223345566899999999
Q ss_pred HHHH--hccCCCCcchH---HHHHHHHHhCCChHHHHHHHHHH
Q 007077 516 AALL--EKIESKDSSFH---TLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 516 ~~~~--~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
|+.- .++..+|..+. ..+--+..+...|.+-..+-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 9754 46777887533 22334444555555544444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.099 Score=48.76 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISG-GAKPDD---ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LE 459 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 459 (619)
.+|..+..++.+.-++.+++.+-+.-... |..|.. ....++..+....+.++++.+.|+...+.-.-..| ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555666666666666666655544332 222311 23344556666677788888888776543111122 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CCCcccH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCc-
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPN------ENNEIIV---PLYGALLSACRIYGNVDMGEKLAALLEKIE--SKDS- 527 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~- 527 (619)
++-.|...|.+-.++++|.-+..+... -++...- -+...+.-++...|....|.+..+++.++. ..|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677788888888888877665544321 0111110 011223456777888888888877775432 2232
Q ss_pred ---chHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 528 ---SFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 528 ---~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.....++++|...|+.|.|..-++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33457888888888887777666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.26 Score=41.15 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTE----VYQIQPKLEHY 461 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 461 (619)
....++..+...|++++|..+.+++... .| |...+..++.++...|+...|.+.|+.+.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455666777888888888888888876 44 456788888888888888888888877643 34777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.59 Score=42.86 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=80.7
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.....|+..+|...|+..... .+-+...-..++.+|...|+.+.|..++..++..-..........-+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 445678888888888887763 233355666788888899999999999988874433333111112233333333333
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+... ++.-...+|+|...-..++..|...|+.++|.+.+-.+..
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3222 2333467898988889999999999999999887777654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.92 Score=46.26 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=75.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHhhCCCC-CCc--ccHHHHHHHHHHHHHcCCHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCL-IDLLGRAGLLDEAEELIRKIPNE-NNE--IIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~ 510 (619)
....+.|.++++.+..++ |+...|... ...+...|++++|++.|++.... ... .....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 456777888888877653 665444433 34556778888888888865521 111 11122334456677788888
Q ss_pred HHHHHHHHHhccCCCCcchH-HHHHHHHHhCCCh-------HHHHHHHHHHHh
Q 007077 511 MGEKLAALLEKIESKDSSFH-TLLANIYASANRW-------EDVTNVRQKMKE 555 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~m~~ 555 (619)
+|...+..+.+...-...+| ...+-++...|+. ++|.+++++.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888877666555544 3445567777877 888888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.095 Score=44.55 Aligned_cols=140 Identities=15% Similarity=0.088 Sum_probs=91.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC----CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 466 DLLGRAGLLDEAEELIRKIPNE----NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
.-+.+.|++++|..-|...... +...-...|..-..+..+.+.++.|+.-..+++++.|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456678888887777665521 111112234445567788999999999999999999999888888899999999
Q ss_pred ChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHH-HHHHHHHHHHHhcccccccCcchhcc
Q 007077 542 RWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYS-MLDRMAKTLLDSKQNAMEGDNLVAIN 617 (619)
Q Consensus 542 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 617 (619)
++++|++-++++.+..+...-. ...+ ....|.+.+-.. +-.++..++++.|.-+..-=||-.=|
T Consensus 183 k~eealeDyKki~E~dPs~~ea------r~~i------~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlStdn 247 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREA------REAI------ARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLSTDN 247 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHH------HHHH------HhcCHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Confidence 9999999999998754332110 0000 013455544333 34567788888886655444443333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.1 Score=43.26 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=37.1
Q ss_pred HHHhcCCHHHHHHHHccCCCC-------ChhhHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007077 264 GYVNCGQLEKARDLFDRSPVR-------DIVLWTAMINGYVQ---FNRFDEAVALFREMQIIRLKPDKFILVALLTGC 331 (619)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 331 (619)
+|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.++..+|..+...|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 344444555555555444322 11122233444555 677788888877765555566666776666554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.13 Score=46.55 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=60.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALL 500 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~ 500 (619)
.|+.-+..+ ..|++..|...|...++.+.-.+ ....+..|..++...|++++|...|..+.. .|..+ .+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455554443 45667777777777776431110 133455577777777777777777665541 12111 223455556
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
......|+.++|...++++.+.-|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6666677777777777777777776655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=50.84 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL----EHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 422 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
...++.+..+|...|++++|...|+...+. .|+. ..|..+..+|...|+.++|++.+++...
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346666666677777777777777666533 4552 2366666667777777777777666653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.16 Score=45.91 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDD----ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCL 464 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 464 (619)
|+.-+.. .+.|++..|...|...++. -|+. ..+..|..++...|++++|..+|..+.+.++-.|. ++.+.-|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4443333 3455566666666666665 2322 24555666666666666666666666665444343 3556666
Q ss_pred HHHHHhcCCHHHHHHHHhhCC
Q 007077 465 IDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~ 485 (619)
..+..+.|+.++|...|+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 666666666666666666655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.1 Score=38.83 Aligned_cols=221 Identities=17% Similarity=0.078 Sum_probs=143.1
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 300 NRFDEAVALFREMQIIRLK-PDKFILVALLTGCAQLGALEQGKWIHGYINEN-RITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 300 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
+....+...+......... .....+......+...+....+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433221 12345555555666666666666666655542 224445556666666777777788888
Q ss_pred HHHhcCCC--C-hhhHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007077 378 IFYELREK--D-AASWTSIIC-GLAMNGKINKALELFSQMISGGAKP----DDITFIGVLSACSHGGLVDEGRRFFNTMT 449 (619)
Q Consensus 378 ~~~~~~~~--~-~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 449 (619)
.+...... + ......... .+...|+++.|...+++.... .| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 87776642 2 122333333 688899999999999998653 43 23344444455677889999999999887
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 450 EVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 450 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
.. .+. ....+..+...+...+++++|...+....... +.....+..+...+...|..+.+...+.+.....|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 63 233 36778888888999999999999998877332 212233555555555777899999999999998887
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.15 Score=40.06 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhCC
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS----SFHTLLANIYASAN 541 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g 541 (619)
-++...|+++.|++.|.+...- .+.....||.-..++.-.|+.++|..-++++.++.-+.. ..|..-+.+|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566788888888888876621 222334588888888888888888888888887754432 23566677888889
Q ss_pred ChHHHHHHHHHHHhCCC
Q 007077 542 RWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 542 ~~~~A~~~~~~m~~~~~ 558 (619)
+-+.|..-|+..-..|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999888888876654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.53 Score=47.97 Aligned_cols=118 Identities=19% Similarity=0.127 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDDITFIGVL-SACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 476 (619)
....+.|.++++.+.+. -|+...|...- +.+...|++++|.+.|+.......--|. ...+.-+..++.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45677899999999887 78877665444 5667789999999999975531011121 2345556777888999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCCH-------HHHHHHHHHHh
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSA-CRIYGNV-------DMGEKLAALLE 520 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~ 520 (619)
|.+.|.++..... -+..+|.-+..+ +...|+. ++|.++++++.
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999999985433 234445444444 3456777 77888887774
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=5.1 Score=42.38 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=36.7
Q ss_pred HhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHH
Q 007077 64 AKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVK 143 (619)
Q Consensus 64 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 143 (619)
.+.|++++|...|-+-... +.| ..++.-+....+...--.+++.+.+.|+. +...-+.|+++|.+.++.++-.
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 3445555555555443322 111 12333333333334444455555555542 3333345556666666665555
Q ss_pred HHHccCC
Q 007077 144 KLFDEMP 150 (619)
Q Consensus 144 ~~~~~~~ 150 (619)
+..+...
T Consensus 452 efI~~~~ 458 (933)
T KOG2114|consen 452 EFISKCD 458 (933)
T ss_pred HHHhcCC
Confidence 5555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.4 Score=43.47 Aligned_cols=146 Identities=9% Similarity=0.071 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 007077 403 INKALELFSQMIS-GGAKPDDI-TFIGVLSACS---------HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA 471 (619)
Q Consensus 403 ~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 471 (619)
.+.|+.+|.+.+. ..+.|+-. .|..+..++. ......+|.+.-+...+. -+-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 3556777777762 22355532 3333332221 123445566666666643 133455666666667777
Q ss_pred CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH--HHHHHHHHhCCChHHHHHH
Q 007077 472 GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH--TLLANIYASANRWEDVTNV 549 (619)
Q Consensus 472 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~ 549 (619)
|+++.|..+|++... -++....+|......+...|+.++|.+.++++.+++|....+- ...++.|+. ...++|.++
T Consensus 352 ~~~~~a~~~f~rA~~-L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKI-HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhh-cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 789999999988772 2344444566667777888999999999999999999765433 233334554 445666666
Q ss_pred HHH
Q 007077 550 RQK 552 (619)
Q Consensus 550 ~~~ 552 (619)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.5 Score=44.12 Aligned_cols=129 Identities=22% Similarity=0.138 Sum_probs=71.6
Q ss_pred HhCCCHHHHHHHHH--hcC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 367 AKCGLIEKALEIFY--ELR-EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 367 ~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
.-.|+++++.++.. ++. .-...-.+.++.-+.+.|.++.|+++-+. ..+ -.....+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHH
Confidence 34455666544443 111 11233455666666677777777765432 111 1223345677777776
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
+.+. .++...|..|.+...++|+++-|++.|.+.. + |..|+-.|...|+.+.-.++.+.+....
T Consensus 340 ~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 340 IAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------D---FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------C---ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 6432 2456678888888888888888888887776 2 6777777777777776666666655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.15 Score=45.96 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=82.6
Q ss_pred hHHHHhhccCC--CCCcccHHHHHHHHHhc-----CChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccC---------
Q 007077 39 LYAEKIFGSIQ--SPCLLAYNLLIKAFAKK-----GSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLG--------- 102 (619)
Q Consensus 39 ~~a~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--------- 102 (619)
-..++.|...+ ..|-.+|-+.+..+... +..+--...++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456666666 56778888888877643 556666778899999999999999999999875432
Q ss_pred -------ChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCC-hhHHHHHHccCC
Q 007077 103 -------EVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGK-ICNVKKLFDEMP 150 (619)
Q Consensus 103 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 150 (619)
+-.-+.+++++|...|+.||..+-..|++++.+.+- ..+..++.--|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 123478899999999999999999999999988765 233344433333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.048 Score=31.92 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+|..+...+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4777777788888888888888888887776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.069 Score=31.16 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
.|..+...+...|++++|++.++++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46666777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.1 Score=36.48 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=60.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
.-.....+.|++++|.+.|+.+... -|- ...-..++.++.+.|+++.|...+++.++.+...|++ .|.....+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~g 91 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRG 91 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHH
Confidence 3344455667777777777776655 221 2355566666677777777777777776654444442 23333333
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
++.-...+ ..+..+..... ..+....|...|+.++..-|++..
T Consensus 92 L~~~~~~~---~~~~~~~~~dr---------------D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFFRSDR---------------DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhh---hHHhhhccccc---------------CcHHHHHHHHHHHHHHHHCcCChh
Confidence 33211111 11111110000 112245677777888888887764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.36 Score=38.80 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh--ccCChhHHHHHHHHH
Q 007077 184 CNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE--LEFTPIMGNALLDMY 234 (619)
Q Consensus 184 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~ 234 (619)
....|+..+..+++.+++..+++..|.++.+.+.+. ++.+..++..|+.-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345566666666666666666666666666666555 444455555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.68 E-value=3.2 Score=41.20 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=69.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-cccHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENN-EIIVPLYGALLSA 502 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~ 502 (619)
+-..+..++.+.|+.++|.+.+.++.+.+...........|+.++...+.+.++..++.+-..... ......|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566677788999999999999987533222355677899999999999999999988753211 1223345554433
Q ss_pred HHHcCC---------------HHHHHHHHHHHhccCCCCcc
Q 007077 503 CRIYGN---------------VDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 503 ~~~~g~---------------~~~a~~~~~~~~~~~p~~~~ 528 (619)
....|+ -..|.+.+.++.+.+|.-+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 333333 12355778888777776665
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.8 Score=34.42 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=79.6
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (619)
+.-.|..++..++..+.... . +..-++.++.-....-+-+-..+.++.+-+- .|. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S--s-ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDi----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS--S-NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH--S--HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc--C-CccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------hhhcchHH
Confidence 34567788888888877654 1 2223333333222223333444444444332 222 23344444
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....+-.+-. . .......++.....|+-+.-.+++..+.+-+..+|.+...++.+|.+.|+..++.+++++.-+.
T Consensus 75 Vi~C~~~~n~--~---se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 75 VIECYAKRNK--L---SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcc--h---HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4444433321 1 1125566777889999999999998888767778888999999999999999999999999998
Q ss_pred CCc
Q 007077 557 GVR 559 (619)
Q Consensus 557 ~~~ 559 (619)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=6.9 Score=43.25 Aligned_cols=191 Identities=12% Similarity=0.022 Sum_probs=110.0
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA 375 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 375 (619)
-..+.++.+=+-+++++.+ .+++..-|. |+ ...++++.|..-+..+- ...+.-.++.-.+.|.+.+|
T Consensus 861 q~SqkDPkEyLP~L~el~~--m~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKK--METLLRKFK--ID--DYLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEA 927 (1265)
T ss_pred HHhccChHHHHHHHHHHhh--chhhhhhee--HH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhh
Confidence 3445566666666666553 222221111 00 12344455544443322 22344455555667777777
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007077 376 LEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ 455 (619)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 455 (619)
+.++..-.+.-...|.+...-+...+.+++|.-.|+..-+. .-.+.+|...|+|.+|..+..++.. .
T Consensus 928 L~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~----~ 994 (1265)
T KOG1920|consen 928 LALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE----G 994 (1265)
T ss_pred hheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC----C
Confidence 77765444444455555666666777888887777764322 2346677788888888888776532 1
Q ss_pred CC--hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 456 PK--LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 456 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
.+ ..+-..|+.-+...+++-+|-++..+.... ..-.+..+++...+++|.++.....
T Consensus 995 ~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 995 KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 22 223356777788888888888888777643 2333444556667777777765553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.1 Score=38.41 Aligned_cols=18 Identities=17% Similarity=-0.082 Sum_probs=11.2
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 007077 502 ACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~ 519 (619)
.+.+.++++.|.+.|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 345567777777766644
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.3 Score=35.05 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
..++..+...+.+......++.+...+ ..+....+.++..|++.. .......++. .++.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 344444545555555555555555544 233344555555554432 2222232221 0111222234445555
Q ss_pred cCCHHHHHHHHhhC
Q 007077 471 AGLLDEAEELIRKI 484 (619)
Q Consensus 471 ~g~~~~A~~~~~~~ 484 (619)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.40 E-value=3.5 Score=36.76 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
.|..-..+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444555555666666665555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.34 E-value=2.1 Score=34.01 Aligned_cols=134 Identities=11% Similarity=0.055 Sum_probs=70.6
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhCCCHH
Q 007077 297 VQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVV---ATALIEMYAKCGLIE 373 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~ 373 (619)
.-.|..++..++..+...+. +..-++.++.-....-+-+-..+.++.+-+ ..|... ...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc--
Confidence 34566777777777665432 333444444433333333333333333322 222221 1234555555443
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 374 KALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 374 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
+.......+..+...|+-+.-.+++..+...+ +|++.....+..+|.+.|+..++.+++.++.++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 23334455677778888888888888876532 677777788888888888888888888887765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.22 E-value=6.1 Score=38.80 Aligned_cols=148 Identities=13% Similarity=0.036 Sum_probs=79.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKP---DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEH 460 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 460 (619)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+......|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45667777888888888888888888777643211 2233344455556677778888777776652 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh--CCCCCCcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCCcchHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRK--IPNENNEIIVPLYGALLSACRIY------GNVDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
...+...+.. ....... ............+..+..-+... ++.+++...|+.+.+..|.....|..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111110000 0000000 00000111112233333333344 78888999999999999998888888
Q ss_pred HHHHHHhC
Q 007077 533 LANIYASA 540 (619)
Q Consensus 533 l~~~~~~~ 540 (619)
++..+.+.
T Consensus 298 ~a~~~~~~ 305 (352)
T PF02259_consen 298 WALFNDKL 305 (352)
T ss_pred HHHHHHHH
Confidence 87765543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.4 Score=37.42 Aligned_cols=93 Identities=4% Similarity=-0.012 Sum_probs=47.6
Q ss_pred HHHHHHhc-CCHHHHHHHHhhCC--CCCCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH-------
Q 007077 464 LIDLLGRA-GLLDEAEELIRKIP--NENNEIIVP---LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH------- 530 (619)
Q Consensus 464 l~~~~~~~-g~~~~A~~~~~~~~--~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~------- 530 (619)
+.+.|... .++++|+..++... -.+...+.. .+.-+...-...+++.+|+.+|+++..-.-+++..-
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 45566666655443 012222222 222233334567899999999999876555554321
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 531 TLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..-+-++.-.++.-.+...+++-.+.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 12222333335555566666666553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.3 Score=43.87 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESK--DSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+..++.+.|+.++|++.++.+.+..|. +..++..|+.+|...+++.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444555556666666666665554443 233455566666666666666666655543
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.54 Score=42.49 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=71.9
Q ss_pred HHHccCC--CCChhhHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------------
Q 007077 276 DLFDRSP--VRDIVLWTAMINGYVQ-----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG------------- 335 (619)
Q Consensus 276 ~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------- 335 (619)
+.|.... .+|-.+|-+.+..|.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 4566666666666644 3455666667788888999999999999988765542
Q ss_pred ---cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH
Q 007077 336 ---ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLI 372 (619)
Q Consensus 336 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 372 (619)
+-+.+..++++|...|+-||..+-..|++++.+.+-.
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3356788999999999999999999999999887753
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.85 E-value=11 Score=40.25 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCC
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALK 204 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 204 (619)
|....-.+|-.+.|.|++++|.++...... ........+...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCC
Confidence 444555788889999999999999976655 55666678888888887653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.21 Score=39.23 Aligned_cols=56 Identities=16% Similarity=0.004 Sum_probs=52.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
-+....|+.+.|++.|.+++.+.|..+.+|+.-+.+|.-+|+.++|+.-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999998764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.60 E-value=3.9 Score=34.37 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=85.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHH--HHHHHhcC
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCL--IDLLGRAG 472 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g 472 (619)
+++.+..++|+.-|..+.+.|...-++ ............|+...|...|+++-....+ |-+. -...| ...+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 356778888888888888776543322 2333344557788888888888888654222 2211 12222 23456788
Q ss_pred CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 473 LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 473 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
.+++....++.+...+++.-...-..|.-+-.+.|++..|.+.|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8999888888887666666666677788788889999999999888865
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.59 E-value=3.6 Score=33.95 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhc
Q 007077 56 YNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGW 100 (619)
Q Consensus 56 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 100 (619)
-..++..+...+.+.....+++.+...+ +.+...++.++..+++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3445555555555555555555555544 2344455555555554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.43 E-value=13 Score=39.81 Aligned_cols=198 Identities=9% Similarity=-0.016 Sum_probs=96.5
Q ss_pred CCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHhHHCCCCCCccc----
Q 007077 16 LQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFA-KKGSFRKSLLLFSKLRERGVSPDNFT---- 90 (619)
Q Consensus 16 ~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~---- 90 (619)
-+.+...|..||.+-. +| ++.+.+-+.--|.....++-.+...+. ...+++.|...+++.....-+++-.-
T Consensus 26 ~~~~l~~Y~kLI~~ai--~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 26 SEEQLKQYYKLIATAI--KC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred ChhhHHHHHHHHHHHH--HH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3445566666666554 21 222222111111224455666666666 56788888888887654432322221
Q ss_pred -HHHHHHHHhccCChhHHHHHHHHHHHhCCC----CChhhHHHH-HHHhHhcCChhHHHHHHccCCC-----CC--eecH
Q 007077 91 -YPFVFKAVGWLGEVKKGEKVHGYVVKTGLE----FDTYVCNSI-MDMYGVLGKICNVKKLFDEMPD-----KD--VVSW 157 (619)
Q Consensus 91 -~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~ 157 (619)
-..++..+.+.+... |...++..++.--. +-...+.-+ +..+...++...|.+.++.+.. .| +..+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 223344455544444 77777776543211 112233333 2333333678878777776542 12 2233
Q ss_pred HHHHHHH--HcCCChhHHHHHHHHhHhc---C-----CCCCChhhHHHHHHHhh--cCCChHHHHHHHHHHHH
Q 007077 158 NVSISGH--VKCMRFEDAVDVFRRMRQG---C-----NLMPDEGTVVSTLSACT--ALKNLELGKEIHRYINQ 218 (619)
Q Consensus 158 ~~li~~~--~~~g~~~~A~~~~~~m~~~---~-----~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 218 (619)
-.++.+. .+.+.++++++.++.+... . ...|-...|..++..|+ ..|++..+...+..+.+
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333 3456566677666665220 0 11233445666666543 44565566666555544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.17 Score=30.04 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998854
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.22 E-value=7.1 Score=38.31 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=54.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 490 EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.....+|..++..+.+.|+++.|...+.++....+. .+.....-++.+...|+..+|...++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334456999999999999999999999998876522 4566677889999999999999999888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.09 E-value=4.8 Score=35.23 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 007077 370 GLIEKALEIFYELR--EK-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 370 g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
|-+.-|.--|.+.. .| -+..||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|+++-|.+=+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHH
Confidence 33444444444332 23 3567888888888888999999988888876 443 233333333455678888887766
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh-hCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 446 NTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIR-KIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
...-..-.-.|-...|-.+. ...-++.+|..-+. +.. ..+... |...+-.+. .|++.+ +.+++++.....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~---WG~~iV~~y-LgkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQ---WGWNIVEFY-LGKISE-ETLMERLKADAT 227 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhh---hhHHHHHHH-HhhccH-HHHHHHHHhhcc
Confidence 65554322223233333222 23346677765443 333 222222 444443322 122211 223344433333
Q ss_pred CC-------cchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 525 KD-------SSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 525 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
++ ..+|.-|++-|...|..++|..+++-....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 32 23578889999999999999999998876554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.2 Score=29.20 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+|..+...+...|++++|...++++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566666667777777777777777666663
|
... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.75 E-value=4.1 Score=34.01 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=63.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
.-...++.+++..+++.+.- +.|... .-..-...+.+.|++.+|..+|+++...+ +..+.-..|+..|.....-
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 33567788889888888874 355532 22223445678899999999999986432 2222255666666554443
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
..=....+++.+..++. . -..++..+........|.+
T Consensus 94 ~~Wr~~A~evle~~~d~-~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 PSWRRYADEVLESGADP-D-ARALVRALLARADLEPAHE 130 (160)
T ss_pred hHHHHHHHHHHhcCCCh-H-HHHHHHHHHHhccccchhh
Confidence 44444455555555432 2 2344444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.63 Score=42.91 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+..++..+...|+++.+...++++...+|-+...|..+..+|...|+...|+..++++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=2.5 Score=35.41 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=68.2
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHH-----HHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHH--HHHhccCcH
Q 007077 367 AKCGLIEKALEIFYELREKDAASWTSII-----CGLAMNGKINKALELFSQMISGGAKPDDI-TFIGVL--SACSHGGLV 438 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll--~~~~~~g~~ 438 (619)
.+.+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|...|++.-.....|... -...+= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4455666666666666655444444332 33556777777777777776653334332 111111 233567777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+......+.+... +-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777666665432 2222333445566666678888888888877764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.41 Score=30.03 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDD 422 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 422 (619)
+|..+...|...|++++|.++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4556666666777777777777776665 5543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=18 Score=38.73 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 007077 400 NGKINKALELFSQMISGG-AKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (619)
..+.+.|..++....... +.+... ....+.......+..+++...++..... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345577777777664332 222222 2333332233332245566665554321 1233344444555557777777
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+...+..|..... ....-.-=+..++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777763211 111112233445455777777777777763
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.37 E-value=32 Score=41.61 Aligned_cols=312 Identities=12% Similarity=0.061 Sum_probs=172.2
Q ss_pred HHHHHHHHhcCChhhHHHHhccC----CCCC--chhHHHHHHHHHhcCCHHHHHHHHcc-CCCCChhhHHHHHHHHHHcC
Q 007077 228 NALLDMYCKCGCLSEARELFDEM----PNKN--VICWTSMVSGYVNCGQLEKARDLFDR-SPVRDIVLWTAMINGYVQFN 300 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g 300 (619)
..+..+-.+++.+.+|...+++- .+.+ ...+-.+...|...+++|....+... ...++. ..-|.-....|
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhc
Confidence 34555667788888888888772 2221 12234444477777877777666653 333322 23455567789
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Q 007077 301 RFDEAVALFREMQIIRLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIF 379 (619)
Q Consensus 301 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 379 (619)
++..|...|+++.+. .|+ ..+++.++......+.++...-..+-.....-+.....++.=+.+--+.++++......
T Consensus 1464 ~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred cHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999999875 444 66788888888888888777665554443321112222233344446777777776666
Q ss_pred HhcCCCChhhHHHH--HHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH--------
Q 007077 380 YELREKDAASWTSI--ICGLAMNGKIN--KALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNT-------- 447 (619)
Q Consensus 380 ~~~~~~~~~~~~~l--~~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-------- 447 (619)
. ..+..+|.+. +..+.+..+-+ .-....+.+.+.-+.| +.+|+..|.+..+.++.-+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 5566666655 22222222211 1112333333221111 2222222222222221111
Q ss_pred --hHHhcCCCCChh------HHHHHHHHHHhcCCHHHHHHHHhh------CCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 448 --MTEVYQIQPKLE------HYGCLIDLLGRAGLLDEAEELIRK------IPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 448 --~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
.....++.++.. -|..-+..-....+..+-+--+++ |...-......+|......++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111112333321 121111111111112222111211 111224455677999999999999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
...-.+.+.. -+.++...+..+...|+-..|+.++++-.+..
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9887776666 45567889999999999999999999987543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=13 Score=37.10 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
-...-+++..+..+..+.-+..+..+|..-| .+...|..++.+|... ..++-..++.++.+..+ .|++.-..|+..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 3445566777777777777777777877743 4566777788877777 55666667777766543 344445556666
Q ss_pred HHhCCCHHHHHHHHHhcCCCC---------hhhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcc
Q 007077 366 YAKCGLIEKALEIFYELREKD---------AASWTSIICGLAMNGKINKALELFSQMIS-GGAKPDDITFIGVLSACSHG 435 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~ 435 (619)
|.+ ++.+.+..+|.++..+- -..|.-+... -..+.+..+.+..+... .|..--.+.+.-+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 655 77777777777654221 1133333321 12334444444444432 22222333444444555556
Q ss_pred CcHHHHHHHHHHhHH
Q 007077 436 GLVDEGRRFFNTMTE 450 (619)
Q Consensus 436 g~~~~a~~~~~~~~~ 450 (619)
.++.+|++++..+.+
T Consensus 219 eN~~eai~Ilk~il~ 233 (711)
T COG1747 219 ENWTEAIRILKHILE 233 (711)
T ss_pred cCHHHHHHHHHHHhh
Confidence 666666666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.22 E-value=8.7 Score=34.82 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGG-AKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
.|-.-+..-.+.|++++|.+.|+.+.... ..| ...+...++.++.+.++++.|....++....++-.||.. |-..+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 34444555668899999999999998762 111 234677777888899999999999999998887777753 333344
Q ss_pred HHH
Q 007077 467 LLG 469 (619)
Q Consensus 467 ~~~ 469 (619)
++.
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.86 E-value=4 Score=35.25 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------hH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL------EH 460 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 460 (619)
.+..+..-|.+.|+.+.|++.|.++.+....|... .+..++..+...|++..+.....+.........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666777777777777777766664444432 45566666666677777766666654431111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|..+ .+...|++.+|.+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2335678888888887766
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.3 Score=29.01 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
|..|...|.+.|++++|+.+++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777788888888888888887543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.70 E-value=10 Score=34.43 Aligned_cols=236 Identities=14% Similarity=0.136 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----CCCCChh
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQI---IRLK--PDKFILVALLTGCAQLGALEQGKWIHGYINEN-----RITVDAV 357 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 357 (619)
+...++..+.+.|++++.+..|++|.. +.+. -+..+.+.++.-.+...+.+.....++.-.+. +-..-..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 345567777777888887777777642 1121 23345666666666555555554444432211 0011112
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC---------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK---------------DAASWTSIICGLAMNGKINKALELFSQMISGG-AKPD 421 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 421 (619)
+-+.|...|...|++.+-.++++++... -...|..=|..|....+-.+...+|++.+.-. --|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345677777778888888777776521 13456777788888888888888888765432 2344
Q ss_pred HHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCCC--CCh---hHHHHHHHHHHhcCCHHHHHHHHhh--CCCCCC
Q 007077 422 DITFIGVLSAC-----SHGGLVDEGRRFFNTMTEVYQIQ--PKL---EHYGCLIDLLGRAGLLDEAEELIRK--IPNENN 489 (619)
Q Consensus 422 ~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~ 489 (619)
+.. ..+++-| .+.|.+++|..-|=+..+.+.-. |.. --|..|..++.++|- .-|+. ...-.+
T Consensus 227 PlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKN 300 (440)
T ss_pred hHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCC
Confidence 443 3455555 35788888765443333322221 221 235556677777661 11111 111224
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 490 EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.|...+.+.++.+|. .+++.+-+++++.-..---++|.+.
T Consensus 301 dPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIR 340 (440)
T ss_pred CHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHHHH
Confidence 555556777887775 4566666666554444334455433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.77 Score=42.73 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=52.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
..-|.++|.+++|+..|...+. +.| +..++..-..+|.+...+..|..-.+.... -+......|.--+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-hhHHHHHHHHHHHHHHHHHh
Confidence 3345566666666666665553 234 555555556666666666666555444442 12223333444444444556
Q ss_pred CHHHHHHHHHHHhccCCCCcc
Q 007077 508 NVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+..+|.+-++.++++.|.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 666666666666666666433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.5 Score=36.44 Aligned_cols=81 Identities=25% Similarity=0.203 Sum_probs=51.5
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 460 HYGCLIDLL---GRAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 460 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
+.+.|++.+ .+.++.+++..++..+. -+|..+...++...+ +...|++.+|+++++.+.+..|..+..-..++.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 444454443 35677777777777655 345555544444443 567788888888888877777777765566666
Q ss_pred HHHhCCC
Q 007077 536 IYASANR 542 (619)
Q Consensus 536 ~~~~~g~ 542 (619)
++...|+
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 6665555
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.8 Score=42.64 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=56.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 472 (619)
.+-|.++|.+++|+..|.+.+.. .| |.+++..-..+|.+...+..|..=....+.. -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 46799999999999999998876 67 8899999999999999988887766665532 123456666654
Q ss_pred CHHHHHHHHh
Q 007077 473 LLDEAEELIR 482 (619)
Q Consensus 473 ~~~~A~~~~~ 482 (619)
.-.+++..+.
T Consensus 173 ~AR~~Lg~~~ 182 (536)
T KOG4648|consen 173 QARESLGNNM 182 (536)
T ss_pred HHHHHHhhHH
Confidence 4444443333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.6 Score=35.69 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=42.7
Q ss_pred hcCCHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 470 RAGLLDEAEELIRKIP-NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
..++++++..++..+. -.|..+...++...+ +...|++++|.++++.+.+..|..+..--.++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4667777777766554 344545443444433 5566777777777777766666665545555666665555
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.94 E-value=4.3 Score=34.98 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=57.2
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
...|++++|..-|...... +++. ...|..-..++.+.+.++.|++--.+...- .+.....+.--..+|.+..
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-CchhHHHHHHHHHHHHhhh
Confidence 3445555555555554432 1221 123333445566677777777766665522 2222111222244677888
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
.+++|+.-|+++.+.+|....+....+.+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 89999999999999999876655544443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=14 Score=34.68 Aligned_cols=62 Identities=11% Similarity=-0.122 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
++..+-...+.++++.|+ ..|+..+-+....++ + ....+.++...|.. +|...+..+.+..|
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-~----~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-V----GDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-h----HHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444444555555554 233333333332222 1 22344444555553 45555555554444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.84 E-value=2.5 Score=39.09 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-C-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 350 NRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-D-----AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
.|.+....+...++..-....+++++...+-++... + ..+-.+.+..+ -.-++++++.++..=++.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 455556666666776666778888888888777632 1 11112222322 3347789999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
+++.+++.+.+.+++.+|.++.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887766554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.82 E-value=11 Score=33.46 Aligned_cols=61 Identities=7% Similarity=0.158 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHH---H--HHHHHHc-CCHHHHHHHHHHHhccCCCCcc
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGA---L--LSACRIY-GNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
-+..+++.+|+++|++........+..-|.. + ...|.-. .+.-.+.+.+++..+++|.-..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 3456778888888877652222111111221 1 1223333 6677777888888888887443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.79 E-value=7.2 Score=33.04 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=73.5
Q ss_pred HHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC
Q 007077 73 LLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK 152 (619)
Q Consensus 73 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 152 (619)
++.++.+.+.+++|+...+..+++.+.+.|+... +..++..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455566677788888888888888888887654 334445555555544433332222 2223333333333322
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYI 216 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 216 (619)
=...+..++..+...|++-+|+++.+.... .+......++.+....++...--.++...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223466677788888888888888877532 11222234555555555554444444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.67 E-value=12 Score=33.53 Aligned_cols=16 Identities=13% Similarity=-0.222 Sum_probs=7.0
Q ss_pred HHHcCCHHHHHHHHHH
Q 007077 503 CRIYGNVDMGEKLAAL 518 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~ 518 (619)
+....++..|++.++.
T Consensus 200 ~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRD 215 (308)
T ss_pred HhhHHHHHHHHHHhcc
Confidence 3333444444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.8 Score=34.26 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHH---hccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHH
Q 007077 421 DDITFIGVLSAC---SHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVP 494 (619)
Q Consensus 421 ~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 494 (619)
+..+.+.++... ...++.+++..+++.+.- +.|+ ..++ -+..+...|++.+|..+|++....+....
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-- 78 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPP-- 78 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCch--
Confidence 344555555543 468899999999999874 3555 3333 34457789999999999999985543222
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 495 LYGALLSACRI-YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 495 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.-..|...|.. .||. . |...+......|.-.++..+.+.+.
T Consensus 79 ~~kAL~A~CL~al~Dp------------------~-Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 79 YGKALLALCLNAKGDA------------------E-WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhcCCh------------------H-HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 13344433433 2332 2 5566666666667777777777766
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.2 Score=39.44 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMIS-----GGAKPDDITFIG 427 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 427 (619)
..++..++..+..+|+.+.+.+.++++... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345667888888888888888888887643 667888999999999999999988888765 577777766555
Q ss_pred HHHH
Q 007077 428 VLSA 431 (619)
Q Consensus 428 ll~~ 431 (619)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.35 Score=28.27 Aligned_cols=32 Identities=19% Similarity=0.041 Sum_probs=24.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhcCChhhHH
Q 007077 213 HRYINQELEFTPIMGNALLDMYCKCGCLSEAR 244 (619)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 244 (619)
++..++..|.++..|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555567778888888888888888888875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.45 E-value=3.1 Score=36.35 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH--HHHcCCHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA--CRIYGNVDM 511 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~ 511 (619)
.|-+.-|+-=|.+.. .+.|+ +.+||.+.--+...|+++.|.+.|+...+- ++... |..+-.+ +.-.|++..
T Consensus 78 lGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~--Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 78 LGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYN--YAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcch--HHHhccceeeeecCchHh
Confidence 344445554444444 44555 556777777777778888888888776633 22221 3333222 334577777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
|.+-+.+....+|+||. ......+-...=+..+|..-+
T Consensus 152 Aq~d~~~fYQ~D~~DPf-R~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF-RSLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred hHHHHHHHHhcCCCChH-HHHHHHHHHhhCCHHHHHHHH
Confidence 77777777777777775 333333333334455555433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.44 E-value=7.8 Score=36.69 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 404 NKALELFSQMISGGAKPDDI--TFIGVLSACSHGGL--VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 404 ~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+. ++++...+|..++-.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 56777888888888777643 34444443332222 45788888888776 8888877776655443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.38 E-value=15 Score=34.09 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=34.3
Q ss_pred HHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 007077 331 CAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE 384 (619)
Q Consensus 331 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 384 (619)
....|+...+...++...... +-+....-.+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 345666666666666665543 23344555677777777777777777777664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.94 E-value=4.4 Score=35.00 Aligned_cols=63 Identities=8% Similarity=0.135 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKF--ILVALLTGCAQLGALEQGKWIHGYINE 349 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 349 (619)
..+..+...|++.|+.+.|++.|.++.+....|... .+-.++..+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457778888888888888888888887766555443 455667777777777777766665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.89 E-value=14 Score=34.08 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++.....|...|.+.+|.++.+++..++|-+...+..|...|...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444556789999999999999999999999999999999999999998888888888853
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.73 E-value=12 Score=31.82 Aligned_cols=133 Identities=13% Similarity=0.157 Sum_probs=65.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhC
Q 007077 407 LELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG--LLDEAEELIRKI 484 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~ 484 (619)
++.++.+.+.|+.|+...+..+++.+.+.|.+..-..+++. ++-+|.......+-.+.... -..-|++++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 34455555666677777777777777777766555444332 44444333332222221111 133344455444
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 485 PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
... +..++..+...|++-+|.++.+.....+.-++ ..+..+-.+.++..-=..+++-..+
T Consensus 89 ~~~--------~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GTA--------YEEIIEVLLSKGQVLEALRYARQYHKVDSVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhh--------HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 422 55556666677777777777666543332222 2333444444444443444444433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.72 E-value=8.8 Score=33.12 Aligned_cols=25 Identities=16% Similarity=0.152 Sum_probs=13.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.-++++...|+-++|..-|++....
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3455555555555555555555543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.55 Score=25.38 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHH
Q 007077 529 FHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.62 E-value=1 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4556666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.22 E-value=6.3 Score=40.06 Aligned_cols=151 Identities=21% Similarity=0.131 Sum_probs=101.1
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 367 AKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
...|+++.|..++..+.+ ...+.++.-+.+.|..++|+++- ..||. -|. ...+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hhh----hhhhcCcHHHHHHHHH
Confidence 345677777776666553 23344555666677777776542 12322 222 2346688888888765
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
+. .+..-|..|.++....|++..|.+.|.+.. + |..|+-.+...|+-+.-..+.....+....|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d---~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------D---LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------c---hhhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 43 345678999999999999999999998765 2 7777777888888776666666666555544
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 527 SSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.. ..+|...|+++++.+++.+-
T Consensus 726 ~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hH-----HHHHHHcCCHHHHHHHHHhc
Confidence 43 33567789999998887654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=41 Score=36.05 Aligned_cols=398 Identities=10% Similarity=0.016 Sum_probs=189.8
Q ss_pred CCChhHHHHhhccCCC-CCc-ccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHH
Q 007077 35 HGNLLYAEKIFGSIQS-PCL-LAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHG 112 (619)
Q Consensus 35 ~g~~~~a~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 112 (619)
....++....+++-+. |-. ..-..-+..+.+.+++...++++.. .+.+...-.....+....|+.++|.....
T Consensus 79 ~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~ 153 (644)
T PRK11619 79 NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAK 153 (644)
T ss_pred cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3356666666666552 221 2223334455566677666653211 13333344555666666677666655555
Q ss_pred HHHHhCCCCChhhHHHHHHHhHhcCC------------------hhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHH
Q 007077 113 YVVKTGLEFDTYVCNSIMDMYGVLGK------------------ICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 113 ~~~~~g~~~~~~~~~~li~~~~~~g~------------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (619)
.+-..|- ..+..++.++..+.+.|. ...|..+...+..........++... .++..+.
T Consensus 154 ~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~ 229 (644)
T PRK11619 154 ELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVE 229 (644)
T ss_pred HHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHH
Confidence 5444332 233445555555554443 33333333333211111111122211 1122222
Q ss_pred HHHHHhHhcCCCCCChhhHHHHHHHhh--cCCChHHHHHHHHHHHHhccCCh----hHHHHHHHHHHhcCChhhHHHHhc
Q 007077 175 DVFRRMRQGCNLMPDEGTVVSTLSACT--ALKNLELGKEIHRYINQELEFTP----IMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 175 ~~~~~m~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
.++. .+.|+...-...+.++. ...+.+.|...+.........+. .+...+.......+...+|...++
T Consensus 230 ~~~~------~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~ 303 (644)
T PRK11619 230 TFAR------TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRD 303 (644)
T ss_pred HHhh------ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 2211 12222211111111211 23456777777777655422221 223344433344333567777777
Q ss_pred cCCC--CCchhHHHHHHHHHhcCCHHHHHHHHccCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 007077 249 EMPN--KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR---DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFI 323 (619)
Q Consensus 249 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 323 (619)
.... .+......-+..-...++++.+...+..|+.. ...-..-+..++...|+.++|...|+++.. ..+
T Consensus 304 ~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--- 377 (644)
T PRK11619 304 DVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--- 377 (644)
T ss_pred hcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC---
Confidence 6554 24444555555666888999888888887632 334455577777778999999999998743 122
Q ss_pred HHHHHHHHHccCcHHHH-HHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHHHhCC
Q 007077 324 LVALLTGCAQLGALEQG-KWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-KDAASWTSIICGLAMNG 401 (619)
Q Consensus 324 ~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g 401 (619)
|-.++.+ .+.|..-.. ...... ....+...+ ...-+..+...|....|...+..+.. .+......+.......|
T Consensus 378 fYG~LAa-~~Lg~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g 453 (644)
T PRK11619 378 FYPMVAA-QRLGEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQ 453 (644)
T ss_pred cHHHHHH-HHcCCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Confidence 3222221 112211000 000000 000001111 11234456677888888888776553 34445555555566778
Q ss_pred ChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 402 KINKALELFSQMISGG----AKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
.++.++.........+ --|- .|...+..+...-.++.+.-. --+....++.|+..+
T Consensus 454 ~~~~ai~~~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~lv~-ai~rqES~f~p~a~S 513 (644)
T PRK11619 454 WWDLSVQATIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSYAM-AIARQESAWNPKARS 513 (644)
T ss_pred CHHHHHHHHhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHHHH-HHHHHhcCCCCCCcc
Confidence 8887777665432210 0121 355566655555455554432 222333377777543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.99 E-value=4.1 Score=30.38 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
+.-++.+-+..+....+.|++....+.+++|.+.+++..|.++|+.++.+-+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456667777777778899999999999999999999999999998875422 24445655553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=26 Score=32.97 Aligned_cols=19 Identities=5% Similarity=-0.304 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHHHhcCCh
Q 007077 222 FTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~ 240 (619)
++..+....+.++.+.|+.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDE 158 (280)
T ss_pred CCHHHHHHHHHHHhccCCH
Confidence 3445555555555555553
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.28 E-value=11 Score=28.46 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=45.8
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIG 427 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 427 (619)
+..+...|++++|..+.+...-||...|.+|... +.|..+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3456778899999998888888888888777653 6677777777777777776 555555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=6.4 Score=36.55 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
...+.+-.+|.+.++++.|.++.+.+..+.|+++.-+.--+-+|.+.|.+..|..-++...+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3466677788999999999999999999999999888889999999999999999888887643
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.22 E-value=11 Score=28.44 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 007077 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (619)
+++.+.+...++.+++..+.+ +..+...|++++|..+.+....||...|-++-. .+.|..+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lIR-------------lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLIR-------------LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHHH-------------HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 444455555554455544332 345667888888888888888888888876644 46777777777
Q ss_pred HHHHHHHcCCCCCHHHH
Q 007077 308 LFREMQIIRLKPDKFIL 324 (619)
Q Consensus 308 ~~~~m~~~g~~p~~~~~ 324 (619)
-+.+|..+| .|...+|
T Consensus 90 rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 777777766 4443333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.62 Score=38.69 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=8.0
Q ss_pred ChhhHHHHHHHhhcCC
Q 007077 189 DEGTVVSTLSACTALK 204 (619)
Q Consensus 189 ~~~~~~~ll~~~~~~~ 204 (619)
++..|..++..|...+
T Consensus 124 ~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 124 DPELWEQLLKYCLDSK 139 (143)
T ss_dssp SSHHHHHHHHHHCTST
T ss_pred cHHHHHHHHHHHHhcC
Confidence 3455555555554443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.98 E-value=1.5 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
.|..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455556666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.97 E-value=47 Score=35.56 Aligned_cols=192 Identities=12% Similarity=0.010 Sum_probs=106.8
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhHH-CCCCCCc--ccHHHHHHHHh-ccCChhHHHHHHHHHHHhCCCCCh--
Q 007077 50 SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRE-RGVSPDN--FTYPFVFKAVG-WLGEVKKGEKVHGYVVKTGLEFDT-- 123 (619)
Q Consensus 50 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~-- 123 (619)
+.++..|..||.. |+.-++-..+ ..++|.. .++..+...+. ...+++.|+..+++.....-.++.
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3456677777755 5555665553 3333322 34555555555 567899999999877643322222
Q ss_pred ---hhHHHHHHHhHhcCChhHHHHHHccCCC----CCee----cHHHH-HHHHHcCCChhHHHHHHHHhHhcCC--CCCC
Q 007077 124 ---YVCNSIMDMYGVLGKICNVKKLFDEMPD----KDVV----SWNVS-ISGHVKCMRFEDAVDVFRRMRQGCN--LMPD 189 (619)
Q Consensus 124 ---~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~p~ 189 (619)
.....++..|.+.+... |...+++..+ .... .+..+ +..+...+++..|++.++.+..... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 12345567777777655 7777776542 1111 22222 2233334799999999998866232 2333
Q ss_pred hhhHHHHHHHhh--cCCChHHHHHHHHHHHHh---c-------cCChhHHHHHHHH--HHhcCChhhHHHHhccCC
Q 007077 190 EGTVVSTLSACT--ALKNLELGKEIHRYINQE---L-------EFTPIMGNALLDM--YCKCGCLSEARELFDEMP 251 (619)
Q Consensus 190 ~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~---~-------~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 251 (619)
...+..++.+.. ..+..+.+.+....+... + +|...++..+++. +...|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555543 345556666666555333 1 2334555556554 455677777776665553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.82 E-value=4.8 Score=26.40 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 530 HTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
...++-++.+.|++++|.+..+.+.+ .+|...+...+...+.+++.+.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 34577778999999999999999987 37777888888788888777665
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.62 E-value=1.4 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=10.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 007077 532 LLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.++.+|.+.|++++|.+.++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.57 E-value=4.5 Score=30.54 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 404 NKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 404 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
-+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+-+ +....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566667777778899999999999999999999999999999887533 333367666643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.4 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++..|+.+|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 467888999999999999999988764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.29 E-value=63 Score=36.34 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 530 HTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
...|..++...|..++|.++-+...
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~f~ 1211 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKAFD 1211 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3456777788888877776654443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.28 E-value=0.85 Score=37.87 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=63.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhH
Q 007077 93 FVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFED 172 (619)
Q Consensus 93 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (619)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888777667788889999999999888888888874332 444567777777788888
Q ss_pred HHHHHHHhH
Q 007077 173 AVDVFRRMR 181 (619)
Q Consensus 173 A~~~~~~m~ 181 (619)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 888777763
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.21 E-value=51 Score=35.15 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=34.6
Q ss_pred hhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHH
Q 007077 124 YVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (619)
.+....|..+.-.|++++|-...-.|...+..-|.-.+..+...++.....
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 456667777777777887777777777666666666666666666554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.9 Score=24.90 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|..++.+|...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 588999999999999999999999875
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.77 E-value=55 Score=35.21 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=49.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCch-hHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHH
Q 007077 212 IHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVI-CWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWT 290 (619)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 290 (619)
.++.+.+.--.+....+.|+.+|.+.++.++-.+..+...+.... -....+..+.+.+-.++|.-+-.+-.. +.....
T Consensus 419 YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ 497 (933)
T KOG2114|consen 419 YLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLD 497 (933)
T ss_pred HHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHH
Confidence 333344433333444466777777777777766666655421111 134445555555555665554433332 222222
Q ss_pred HHHHHHHHcCChhHHHHHHHHH
Q 007077 291 AMINGYVQFNRFDEAVALFREM 312 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m 312 (619)
.+ +-..+++++|++.+..|
T Consensus 498 il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 498 IL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HH---HHHhcCHHHHHHHHhcC
Confidence 22 33456777777777655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.21 E-value=40 Score=35.51 Aligned_cols=15 Identities=7% Similarity=-0.239 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHcC
Q 007077 337 LEQGKWIHGYINENR 351 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~ 351 (619)
...+.+.++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 445666666666655
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.98 E-value=2 Score=23.76 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
|..+...+...|+++.|...++...+..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444455555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.94 E-value=3.5 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.+.-++.+.|++++|.+..+.+.+.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567899999999999999999999999884
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.79 E-value=6.8 Score=34.10 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=51.3
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhCCChH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK----DSSFHTLLANIYASANRWE 544 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 544 (619)
.+.|+ ++|.+.|-.+...|...++.....|+.-| ...+.++++.++-++.++.+. |+.++..|+.+|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44455 66777777777665555554455555444 467788888887777665433 5667788888888888888
Q ss_pred HHH
Q 007077 545 DVT 547 (619)
Q Consensus 545 ~A~ 547 (619)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.72 E-value=26 Score=30.43 Aligned_cols=118 Identities=9% Similarity=-0.025 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHH
Q 007077 405 KALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL----EHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 478 (619)
+.....+++........-. +-..+...+...|++++|...++..... +.|. ..--.|.......|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5555556666542111111 2223345667788888888888876632 2221 12234566778889999999
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 479 ELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
..++.....+-.+. ....-.+.+...|+-++|+..|+++.+.+++++
T Consensus 147 ~~L~t~~~~~w~~~--~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 147 KTLDTIKEESWAAI--VAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHhccccccHHHH--HHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99987764321111 122335678899999999999999988874443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.70 E-value=6.9 Score=29.27 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=43.2
Q ss_pred hhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 007077 170 FEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALL 231 (619)
Q Consensus 170 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 231 (619)
.-++.+-++.+.. ..+.|++....+.+++|.+.+++..|..+++-+......+...|..++
T Consensus 23 ~we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3345555666655 678888888888889998888888888888877765443444554444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.43 E-value=60 Score=34.44 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=47.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 007077 396 GLAMNGKINKALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL 473 (619)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 473 (619)
++...|+-++|-.+.++|.... .|-.. -..++..+|+-.|+-....+++.-.+. ....|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3455566667777777776542 22111 233444566666666666666655444 334455555555555555566
Q ss_pred HHHHHHHHhhCC
Q 007077 474 LDEAEELIRKIP 485 (619)
Q Consensus 474 ~~~A~~~~~~~~ 485 (619)
++.....++-+.
T Consensus 587 p~~~~s~V~lLs 598 (929)
T KOG2062|consen 587 PEQLPSTVSLLS 598 (929)
T ss_pred hhhchHHHHHHh
Confidence 666555554444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.03 E-value=41 Score=32.25 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-----CChhH
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQI-IRLKPD---KFILVALLTGCAQLGALEQGKWIHGYINENRIT-----VDAVV 358 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 358 (619)
+|-.+..++-+..++.+++.+-+.-.. .|..|. .....++..++...+.++++.+.|+...+-... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444555444455555554443222 112221 112233455555666666666666655432111 12346
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCC-------CChh------hHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCC
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELRE-------KDAA------SWTSIICGLAMNGKINKALELFSQMI----SGGAKPD 421 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 421 (619)
+..|...|.+..++++|.-+..+..+ .|.. +..-|.-++...|....|.+.-++.. ..|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 67777777777777776655444321 1211 12234455666677666666666543 2343332
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007077 422 -DITFIGVLSACSHGGLVDEGRRFFNTMT 449 (619)
Q Consensus 422 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 449 (619)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2244555666777777777777666654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.00 E-value=6.5 Score=36.89 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE---NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
|--=..-|.+..++..|...|.+-... ....+...|+.-..+-...|++..++.-..++..++|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 334456678889999999999876522 22234445666666667789999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHH
Q 007077 538 ASANRWEDVTNVRQKMK 554 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~ 554 (619)
....++++|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999998887764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.82 E-value=8.6 Score=35.76 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=71.6
Q ss_pred hCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC-CCe-----ecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCh
Q 007077 117 TGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD-KDV-----VSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDE 190 (619)
Q Consensus 117 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 190 (619)
.|.+....+...++..-....+++.+...+-++.. |+. .+-.+.++-+. .-++++++.++..-.+ .|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcch-hccccch
Confidence 35555555666666666667778888777766553 211 12223334333 3467789988888888 8999999
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 007077 191 GTVVSTLSACTALKNLELGKEIHRYINQE 219 (619)
Q Consensus 191 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 219 (619)
++++.+++.+.+.++...|..+...++..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999988888777766
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.81 E-value=39 Score=31.83 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=16.1
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 007077 534 ANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+....+.++|++|.++++-..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445678899999999988543
|
It is also involved in sporulation []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.75 E-value=1.5 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.004 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+-.+..++.+.|++++|.+.++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556778889999999999998764
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.71 E-value=52 Score=33.15 Aligned_cols=392 Identities=13% Similarity=0.089 Sum_probs=194.7
Q ss_pred CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHH
Q 007077 152 KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALL 231 (619)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 231 (619)
.|+..|...+.-+-+.+.+.+.-.+|..|....+..||...+.+.- -+-...+.+.|+.++....+..|.++..+....
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFNPDSPKLWKEYF 181 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 3888999999888888889999999999987455555544332221 233444599999999999888888888876655
Q ss_pred HHHHhcCChhhH-HHHhccCCC-------CCchhHHHHHH------HHHh------------cCCHHHH-HHHHccCCCC
Q 007077 232 DMYCKCGCLSEA-RELFDEMPN-------KNVICWTSMVS------GYVN------------CGQLEKA-RDLFDRSPVR 284 (619)
Q Consensus 232 ~~~~~~g~~~~A-~~~~~~~~~-------~~~~~~~~li~------~~~~------------~g~~~~A-~~~~~~~~~~ 284 (619)
++-...-.--.+ .+.+..-.. .....|+.... +..+ .+++.+. ........+.
T Consensus 182 rmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~ 261 (568)
T KOG2396|consen 182 RMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPD 261 (568)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 543221000000 001100000 00001111100 0000 0111111 0111111123
Q ss_pred ChhhHHHHHHH----HHH---------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC------cHHH
Q 007077 285 DIVLWTAMING----YVQ---------------FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG------ALEQ 339 (619)
Q Consensus 285 ~~~~~~~li~~----~~~---------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------~~~~ 339 (619)
++.+|.-+..- +.+ ..+.+....+|++..+ .-|+...+...|..|...- .+..
T Consensus 262 np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h 339 (568)
T KOG2396|consen 262 NPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILH 339 (568)
T ss_pred CCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44444433221 111 1112334456665544 2344445555555554322 2333
Q ss_pred HHHHHHHHHHcC-C-CCChhHHHHHHHHHHhCCCHHH-HHHHHHhcCCCChhhHHHHHHHHHhCC-ChHH-HHHHHHHHH
Q 007077 340 GKWIHGYINENR-I-TVDAVVATALIEMYAKCGLIEK-ALEIFYELREKDAASWTSIICGLAMNG-KINK-ALELFSQMI 414 (619)
Q Consensus 340 a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~-A~~~~~~m~ 414 (619)
...+++...+.+ . +.....|..+.-+++......+ |..+..+....+...|-.-+....+.. +++- -.++|....
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r 419 (568)
T KOG2396|consen 340 TMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLR 419 (568)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 444455444432 1 2344556666666666655433 344443555566667766555554332 2221 122223333
Q ss_pred HCCCCCCHHHHHHHHHHHhccCc-HHH-HH-HHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc
Q 007077 415 SGGAKPDDITFIGVLSACSHGGL-VDE-GR-RFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGLLDEAEELIRKIPNENNE 490 (619)
Q Consensus 415 ~~g~~p~~~~~~~ll~~~~~~g~-~~~-a~-~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 490 (619)
..-..+-...+.+.. .|+ ... .. .++..+.. -..|+.. .-+.+++-+.+.|-.++|...+.....- .+
T Consensus 420 ~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp 491 (568)
T KOG2396|consen 420 KQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PP 491 (568)
T ss_pred HHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CC
Confidence 222222233333333 111 111 11 11222222 2234433 3456777788888889999998888743 45
Q ss_pred ccHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 491 IIVPLYGALLSAC--RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 491 ~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
++...|..++..- ....+...+..+|+.+..-...++..|......-...|+.+.+-.++.+..
T Consensus 492 ~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 492 FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 5656666666432 223347777888888765444677767666555556777777777766654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.21 E-value=7.8 Score=29.34 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 172 DAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 172 ~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
+..+-++.+.. ..+.|++....+.+++|.+.+++..|..+++.+..........|..++.
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 44555555555 6788888888888888888888888888888887775444445555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.18 E-value=23 Score=36.25 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=36.4
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 267 NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|....+ |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 444555544443322 2445566666666666666666666665443 33444444455554443333333
Q ss_pred HHHc
Q 007077 347 INEN 350 (619)
Q Consensus 347 ~~~~ 350 (619)
..+.
T Consensus 718 ~~~~ 721 (794)
T KOG0276|consen 718 AKKQ 721 (794)
T ss_pred HHhh
Confidence 3333
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.88 E-value=25 Score=33.99 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=86.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh---CCChHHHHHHHH
Q 007077 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS---ANRWEDVTNVRQ 551 (619)
Q Consensus 475 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 551 (619)
+.-+.+++++... ++.+...+..++..+.+..+.+...+-++++....|+++..|...++.... .-.+++...++.
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 4455666665533 556666788888888888888888899999999999999888777765544 235777777777
Q ss_pred HHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchH-HHHHHHHHHHHHHHHhcccc---cccCcchhccc
Q 007077 552 KMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMK-EIYSMLDRMAKTLLDSKQNA---MEGDNLVAINF 618 (619)
Q Consensus 552 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~ 618 (619)
+....-.....+. ......-++.+ .+...+-++...+.++|+++ -..|.++.+||
T Consensus 127 ~~l~~L~~~~~~~------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGR------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccc------------cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6653211100000 01111122333 34446778888899999985 56677888887
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.82 E-value=72 Score=34.15 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=24.6
Q ss_pred HHHHHHHhHhcCChhHHHHHHccCC---CCCeecHHHHHHHHHcC
Q 007077 126 CNSIMDMYGVLGKICNVKKLFDEMP---DKDVVSWNVSISGHVKC 167 (619)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 167 (619)
.-.+|-.|.|+|++++|.++..+.. .+....+-..+..+..+
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3456667788888888888883322 23334455556666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.45 E-value=70 Score=33.74 Aligned_cols=246 Identities=11% Similarity=0.017 Sum_probs=110.8
Q ss_pred HcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC-----cHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 298 QFNRFDEAVALFREMQI-------IRLKPDKFILVALLTGCAQLG-----ALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 298 ~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
...+.+.|+.+|+.+.+ .|.++ ....+..+|.+.. +.+.|..++....+.|. |+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34566666666666654 33221 2333444444322 45566666666666652 332222222211
Q ss_pred HHh-CCCHHHHHHHHHhcCCC-ChhhHHHHHHHHH----hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 366 YAK-CGLIEKALEIFYELREK-DAASWTSIICGLA----MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 366 ~~~-~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
... ..+...|.++|...... ++.++-.+..+|. ...+...|..++++..+.| .|...--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 13456677777665533 3333333333332 2345677777777777776 3332222222233333 4555
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHH---HHh----cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc----CC
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDL---LGR----AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY----GN 508 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 508 (619)
.+...+..+... +..-....-..+... ... ..+.+.+..++.+....++... ...+.+.|... .+
T Consensus 415 ~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a---~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 415 TALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADA---ILKLGDYYYYGLGTGRD 490 (552)
T ss_pred HHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHH---HhhhcceeeecCCCCCC
Confidence 444444443332 211110000001100 000 1244445555555443333322 33333333222 24
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhC-C--ChHHHHHHHHHHHhC
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASA-N--RWEDVTNVRQKMKEM 556 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~ 556 (619)
++.|...+.++.... +.....++.++... | .+..|.+++++....
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 666666666665554 44455666655543 1 156777777776653
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.26 E-value=8.4 Score=34.47 Aligned_cols=61 Identities=8% Similarity=-0.168 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+..+..++...|++-++++-...+....|++..+|..-+.+....-+..+|..-+.+..+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3444556677899999999999999999999999999999999999999999988888763
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.17 E-value=1.1 Score=41.91 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=71.6
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
..|.+++|++.|...+. -.++....|.--.+++.+.++...|++-+..+.+++|+...-|-.-..+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~-lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE-LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccc-cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45778888888887773 34455445555666778888899999999999999999888888888888888999999999
Q ss_pred HHHHHhCCCccc
Q 007077 550 RQKMKEMGVRKV 561 (619)
Q Consensus 550 ~~~m~~~~~~~~ 561 (619)
+....+.+....
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 998887766544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.75 E-value=22 Score=35.19 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=44.1
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
+...|+++.+.+.+..... -......+...++......|++++|....+.+..-+-.++.+...-+-.-...|-++++.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~-~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK-IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHhhhHHHHHHHhhchhh-hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 3445666666655544431 122222335555555556666666666666665544444443332222233445566666
Q ss_pred HHHHHHHhCC
Q 007077 548 NVRQKMKEMG 557 (619)
Q Consensus 548 ~~~~~m~~~~ 557 (619)
..+++....+
T Consensus 412 ~~wk~~~~~~ 421 (831)
T PRK15180 412 HYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccC
Confidence 6666655433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.34 E-value=3.7 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555666666666555543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.05 E-value=23 Score=28.60 Aligned_cols=74 Identities=11% Similarity=-0.045 Sum_probs=46.0
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHhhCCC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 455 QPKLEHYGCLIDLLGRAGL---LDEAEELIRKIPN-ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.++..+-..+..++.++.+ ..+.+.++++... .+....-...--|.-++.+.+++++++++.+...+.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 5666666667777776654 3445667766663 211112222334455677888888888888888888777766
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.81 E-value=9.7 Score=33.20 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCCcccHHHHHHHHHHHHHcCCHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP---NENNEIIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (619)
.|.+.|-.+... +.--++.....|+..|. ..+.++|+.++.+.. ..++.+++..+.+|++.+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444332 22234444444444444 345555555554433 222255555566666666666666554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.03 E-value=72 Score=32.31 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=94.3
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA 431 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 431 (619)
.|....-+++..+.....+.-.+.+..+|.. .+-..+..++.+|... ..+.-..+++++.+. .-|...+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHH
Confidence 3444555566666666666666666655553 3555666667777666 556666677766665 2333333333333
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK------LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACR 504 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 504 (619)
+...++.+.+..+|..+..+ +.|. .+.|.-+.... ..+.+....+..++... +.......+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33446666666666666543 2231 12333333322 23445555555544422 11112222334445566
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
...++.+|++++..+.+.+..|..+...++.-+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 66777777777777776666666655555544433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.2 bits (157), Expect = 4e-11
Identities = 27/221 (12%), Positives = 61/221 (27%), Gaps = 9/221 (4%)
Query: 303 DEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362
A L + P + L LL +L+ + G ++ +++ A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 363 IEMYAKCGLIEKALEIFYELREK-------DAASWTSIICGLAMNGKINKALELFSQMIS 415
+ + A + + + +++ G A G + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 416 GGAKPDDITFIGVLSACSHGGLVDEG-RRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL 474
G PD +++ L R M++ ++ + L+ RA +L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVL 252
Query: 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL 515
++ LL KL
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 3e-07
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 258 WTSMVSGYVNCGQLEKARDLFDR-------SPVRDIVLWTAMINGYVQFNRFDEAVALFR 310
+ + QL A L + + ++ A++ G+ + F E V +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 311 EMQIIRLKPDKFILVALLTGCAQLGALEQ 339
++ L PD A L +
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 1e-06
Identities = 32/331 (9%), Positives = 81/331 (24%), Gaps = 33/331 (9%)
Query: 171 EDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEI----HRYINQELEFTPIM 226
D L + +++ C L L + H + T M
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 227 GNALLDMYCKCGCLSEARELFDEMPNK----NVICWTSMVSGYVNCGQLEKA-----RDL 277
NA++ + + G E + + + +++ + + + Q +
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 278 FDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGAL 337
+ +++ + + + P LL
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 338 EQGKWIHGYINENRITVDA-----VVATALIEMYAKCGLIEKALEIFYELREKDAASWTS 392
+H + + + + + + K L K ++ + + W
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEK 347
Query: 393 IICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY 452
+C +AL + + L L+DE + +
Sbjct: 348 ALC---------RALRETKNRLEREVYEGRFSLYPFLC------LLDEREVVRMLLQVLQ 392
Query: 453 QIQPKLEHYGCLIDLLGRAGLLDEAEELIRK 483
+ + E + L L + R
Sbjct: 393 ALPAQGESFTTLARELSARTFSRHVVQRQRV 423
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 16/100 (16%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 51 PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKG-EK 109
L YN ++ +A++G+F++ + + +++ G++PD +Y + +G + E+
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER 222
Query: 110 VHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEM 149
+ + GL+ ++ + V K+
Sbjct: 223 CLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.7 bits (114), Expect = 5e-06
Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 14/187 (7%)
Query: 75 LFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYG 134
L R+ SP + + + + G + L +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 135 VLGKICNVKKLFDEMPDK-------DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187
+ ++ L + + +N + G + F++ V V ++ L
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLT 197
Query: 188 PDEGTVVSTLSACTALKNLELGKEIHRYINQ----ELEFTPIMGNALLDMYCKCGCLSEA 243
PD + + L I R + Q L+ + LL + L
Sbjct: 198 PDLLSYAAALQCMGRQDQDA--GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 244 RELFDEM 250
++
Sbjct: 256 HKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 2e-04
Identities = 27/218 (12%), Positives = 60/218 (27%), Gaps = 10/218 (4%)
Query: 59 LIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKV---HGYVV 115
L++ K S + + +S FK ++ + H
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 116 KTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCM-RFEDAV 174
+ + N++M + G + + + D + +S + ++CM R +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 175 DVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMY 234
R M EG + L L + + +++ T + L
Sbjct: 218 GTIERC---LEQMSQEGLKLQALFTAVLLSEEDRATVLKAV--HKVKPTFSLPPQLPPPV 272
Query: 235 CKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLE 272
L + D + + + QL
Sbjct: 273 NTSKLLRDVYA-KDGRVSYPKLHLPLKTLQCLFEKQLH 309
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 59/380 (15%), Positives = 110/380 (28%), Gaps = 77/380 (20%)
Query: 239 CLSEARELF-----DEMPNKNVICWTSMVSGYVNCGQLEKARDLFDR---------SPVR 284
CL +A EL D+ ++++ W + Y + G+L + D+ SP R
Sbjct: 73 CLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132
Query: 285 DIVLWTAMING----YVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLGALEQ 339
G N+ + A F + + KP L +L
Sbjct: 133 IESPELDCEEGWTRLKCGGNQNERAKVCFE--KALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 340 GKW-IHGY-----INENRITVDAVVATALIEMYAKCGLIEKALEIF---YELREKDAASW 390
+ I +N + + ++A L +M + + ++ E
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250
Query: 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITF---IGVL---SACSHGGLVDEGRRF 444
S + +KA+EL + + P++ IG L + G
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALE--YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308
Query: 445 FNTMTEVY-----------QIQPKLEH-YGCLIDLLGRAGLLDEAEELIRK-----IPNE 487
+ E+ + L L L A +EAE +K +
Sbjct: 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368
Query: 488 NNEIIVPLYGALLS---------------ACRIYGNVDMGEKLAALLEKIESK------- 525
+++ YG +I EK+ L+KI
Sbjct: 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGA 428
Query: 526 DSSFHTLLANIYASANRWED 545
DS +LA + + +
Sbjct: 429 DSEALHVLAFLQELNEKMQQ 448
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 36/318 (11%), Positives = 84/318 (26%), Gaps = 56/318 (17%)
Query: 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTL--SACTALKNLELG-KEIHRYINQELEFTPI 225
++ ++ +R++ P+ A A + + EI EL+ +
Sbjct: 14 SYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRM 70
Query: 226 MGNALLDMYCKCGCLSEARELFDEMPN-KNVICWTSMVSGYVNCGQLEKARDLFDRSPVR 284
L + ++E + N S Y + A +
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG--D 128
Query: 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIH 344
+ + ++ +R D A ++M D
Sbjct: 129 SLECMAMTVQILLKLDRLDLARKELKKM--QDQDEDA----------------------- 163
Query: 345 GYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNG 401
+ATA + + A ++ A IF E+ +K G
Sbjct: 164 ---------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214
Query: 402 KINKALELFSQMISGGAKPDDITFIGVLSACSH--GGLVDEGRRFFNTMTEVYQIQPKLE 459
+ A + + + + L S G + R+ + + + ++ P ++
Sbjct: 215 RWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272
Query: 460 HYGCLIDLLGRAGLLDEA 477
+ + D
Sbjct: 273 ------EYRAKENDFDRL 284
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 42/338 (12%), Positives = 95/338 (28%), Gaps = 43/338 (12%)
Query: 238 GCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDR----SPVRDIVLWTAMI 293
G + R + + Q + A + ++ + + W A +
Sbjct: 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQV 126
Query: 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENR-- 351
Y + A L + + L A +L + + G N R
Sbjct: 127 --YCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC--LVKLYDWQGALNLLGETNPFRKD 182
Query: 352 -------------ITVDAVVATALIEMYAKCGLIEKALEIF---YELREKDAASWTSIIC 395
I ++A + ++Y ++A E + + K ++ ++
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242
Query: 396 GLAMNGKINKALEL---FSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY 452
+ L L +S A ++ L+ SH + + ++ +
Sbjct: 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS---IN 299
Query: 453 QIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP--NENNEIIVPLYGALLSACRIYGNVD 510
++ + C D L + + KI + N + PL+ A L
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK---- 355
Query: 511 MGEKLAALLEK---IESKDSSFHTLLANIYASANRWED 545
KL + + + + Y N+ +
Sbjct: 356 --NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 29/261 (11%), Positives = 73/261 (27%), Gaps = 27/261 (10%)
Query: 234 YCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMI 293
Y CL + + + + + + + + D + +
Sbjct: 154 YLAAFCLVKLYD-WQGA-----LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 294 NGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT 353
Y + FD A ++ + + + + L L A E+ +
Sbjct: 208 QVYTNLSNFDRAKECYK--EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265
Query: 354 VDAVVATALIEM----YAKCGLIEKALEIF--YELREKDAASWTSIICGLAMNGKINKAL 407
DA +L + + + +A + EK + L + + L
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325
Query: 408 ELFSQMISGGAKPDDITFIGVLSAC-SHGGLVDEGRRFFNTMTEVYQIQPKLE--HY--G 462
+ ++++ P ++ + A G ++ N + + P+ G
Sbjct: 326 AITTKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD---RHPEKAVTWLAVG 380
Query: 463 CLIDLLGRAGLLDEAEELIRK 483
+ + + EA K
Sbjct: 381 IYYLCVNK---ISEARRYFSK 398
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 39/307 (12%), Positives = 92/307 (29%), Gaps = 32/307 (10%)
Query: 258 WTSMVSGYVNCGQLEKARDLFDRSPV--RDIVLWTAMINGYVQFNRFDEAVALFREMQII 315
+ ++ + +L +A D + L + +RF + +A+ +I+
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT--KIL 332
Query: 316 RLKPDKFILVALLTGC-AQLGALEQ-GKWIHGYINENRITVDAVVATALIEMYAKCGLIE 373
+ P + L + G + + ++ + +A + Y I
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY--YLCVNKIS 390
Query: 374 KALEIFY---ELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDIT---FIG 427
+A F + + +W A+ G+ ++A+ ++ F+G
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLG 448
Query: 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEH-YGCLIDLLGRAGLLDEAEEL------ 480
+ G + + Y + L + + A
Sbjct: 449 M--QHMQLGNILLANEYLQ---SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 481 IRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE--KIESKDSSFHTLLANIYA 538
+ K N + + L A R D + AL + + + D++ HT +A +Y
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYD--AAIDALNQGLLLSTNDANVHTAIALVYL 561
Query: 539 SANRWED 545
Sbjct: 562 HKKIPGL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 67/438 (15%), Positives = 137/438 (31%), Gaps = 122/438 (27%)
Query: 240 LSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMI-NGYV- 297
+S LF + +K MV +V L F SP++ +M+ Y+
Sbjct: 61 VSGTLRLFWTLLSKQ----EEMVQKFVE-EVLRINYK-FLMSPIKTEQRQPSMMTRMYIE 114
Query: 298 QFNRFDEAVALFREMQIIR-------------LKPDKFILVALLTGCAQLGALEQGKWIH 344
Q +R +F + + R L+P K +L+ + G GK
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--------GKTW- 165
Query: 345 GYINENRITVDAVVATALIEMY---------AKCGLIEKALEI---FYELREKDAASWTS 392
+ +D ++ + C E LE+ + + S +
Sbjct: 166 -------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 393 IICGLAMNGKINKALELFSQMISGGAKP------DDITFIGVLSA----CSHGGLV---D 439
+ + I+ +++ ++ +A C L+
Sbjct: 219 HSSNIKLR--IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRF 274
Query: 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL-LDEAEELIRK--------IPNENNE 490
+ + ++ L+H+ L DE + L+ K +P E
Sbjct: 275 KQ--VTDFLSAATTTHISLDHH--------SMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 491 IIVPLYGALLSA------CRI--YGNVDMGEKLAALLEK-IESKDSS-----FHTLL--- 533
P ++++ + +V+ +KL ++E + + + F L
Sbjct: 325 TN-PRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 534 --ANIYASANR----WEDVT--NVRQKMKEMG----VRKVPGCSSIEINGIIHEFLV--- 578
A+I W DV +V + ++ V K P S+I I I E V
Sbjct: 383 PSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 579 GDPS-HSEMKEIYSMLDR 595
+ + H + + Y++
Sbjct: 441 NEYALHRSIVDHYNIPKT 458
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 37/280 (13%)
Query: 288 LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGC-AQLGALEQ-GKWIHG 345
+ ++ + F L ++ P + + G +L + H
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTS--VVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 346 YINENRITVDA--VVATALIEMYAKCGLIEKALEIFY---ELREKDAASWTSIICGLAMN 400
++ + V E A L + +W + A+
Sbjct: 82 LVDLYPSNPVSWFAVGCYY---LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138
Query: 401 GKINKALELFSQMISGGAKPDDIT---FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK 457
+ ++A+ + +IG+ RFF+ + I P+
Sbjct: 139 SEHDQAMAAYFTAAQ--LMKGCHLPMLYIGL--EYGLTNNSKLAERFFS---QALSIAPE 191
Query: 458 L-EHYGCLIDLLGRAGLLDEAEEL----IRKIPNENNEIIVPLYGALLSACRIYGNV--D 510
+ + + G AE+ + KI NE+ V + LL+ G+V
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL---GHVCRK 248
Query: 511 MGEKLAALLE-----KIESKDSSFHTLLANIYASANRWED 545
+ + AL + +++S ++ + I++ +E+
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFEN 288
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 53/281 (18%), Positives = 103/281 (36%), Gaps = 46/281 (16%)
Query: 226 MGNALLDMYCKCGCLSEARELFDEM----PNKNVICWTSMVSGYVNCGQLEKARDLFDRS 281
+GN + G L EA E + P+ + + ++ + V G +E A + +
Sbjct: 73 LGNVYKER----GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 282 ----PVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGAL 337
P + + + N R +EA A + + I +P+ + LG +
Sbjct: 128 LQYNP-DLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPN------FAVAWSNLGCV 178
Query: 338 --EQGKW---IHGYINENRITVDAVVATALIEM---YAKCGLIEKALEIFY---ELREKD 386
QG+ IH + E +T+D A I + + + ++A+ + L
Sbjct: 179 FNAQGEIWLAIHHF--EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITF---IGVLSACSHGGLVDEGRR 443
A ++ C G I+ A++ + + I +P + A G V E
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLAN--ALKEKGSVAEAED 292
Query: 444 FFNTMTEVYQIQPKL-EHYGCLIDLLGRAGLLDEAEELIRK 483
+N ++ P + L ++ G ++EA L RK
Sbjct: 293 CYN---TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 47/270 (17%), Positives = 98/270 (36%), Gaps = 36/270 (13%)
Query: 234 YCKCGCLSEARELFDEM----PNKNVICWTSMVSGYVNCGQLEKARDLFDRS----PVRD 285
+ G A ++ P+ N + S + C +L+++ + P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LL 66
Query: 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCA--QLGALEQGKWI 343
++ + N Y + + EA+ +R +RLKPD FI + A G +E +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPD-FIDGYINLAAALVAAGDMEGA--V 121
Query: 344 HGYINENRITVDAVVATA---LIEMYAKCGLIEKALEIFY---ELREKDAASWTSIICGL 397
Y + + + + L + G +E+A + E + A +W+++ C
Sbjct: 122 QAY--VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Query: 398 AMNGKINKALELFSQMISGGAKPDDITF---IGVLSACSHGGLVDEGRRFFNTMTEVYQI 454
G+I A+ F + ++ P+ + +G + D + +
Sbjct: 180 NAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGN--VLKEARIFDRAVAAYL---RALSL 232
Query: 455 QPKL-EHYGCLIDLLGRAGLLDEAEELIRK 483
P +G L + GL+D A + R+
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 20/198 (10%), Positives = 58/198 (29%), Gaps = 13/198 (6%)
Query: 202 ALKNLELGKEI-HRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDE----MPNKNVI 256
L L +I + + + ++ DM EA +++ + KN++
Sbjct: 42 CLLVLGHHPDIWYEAAQYLEQSSKLL-AEKGDMNNAKLFSDEAANIYERAISTLLKKNML 100
Query: 257 CWTSMVSGYVNCGQLEKARDLFDR----SPVRDIVLWTAMINGYVQFNRFDEAVALF-RE 311
+ + + + EK +++R + +++ + + +F +
Sbjct: 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160
Query: 312 MQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371
+ R + ++ AL+ I + A I+ +
Sbjct: 161 REDARTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNE 218
Query: 372 IEKALEIFYELREKDAAS 389
+F + +
Sbjct: 219 DNNTRVLFERVLTSGSLP 236
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 45/313 (14%), Positives = 83/313 (26%), Gaps = 57/313 (18%)
Query: 265 YVNCGQLEKARDLF---------DRSPVRDIVLWTAMINGYVQFNRFDEAVALFREM-QI 314
+N G ++A L R + + ++AL ++ Q+
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSV-LGEVLHCKGELTRSLALMQQTEQM 82
Query: 315 IRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374
R + L +++ QG + E EK
Sbjct: 83 ARQHDVWHYALWSLIQQSEI-LFAQGFLQTAW-----------------ETQ------EK 118
Query: 375 ALEIFYELREKDAASWTSIICGLAM----NGKINKALELFSQMISGGAK---PDDITFIG 427
A ++ E + ++ A ++++A I + + +
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178
Query: 428 VLSACSHG-GLVDEGRRFFNTMTEVYQIQPKLEHYGCLID-----LLGRAGLLDEAEELI 481
+L CS G +D R N + + + + G A +
Sbjct: 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 238
Query: 482 RKIPNENNEIIVPLYGALLSACRIY---GNVDMGEK-LAALLEKIESKD-----SSFHTL 532
R L G + R G + E L L E S + L
Sbjct: 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298
Query: 533 LANIYASANRWED 545
L +Y A R D
Sbjct: 299 LNQLYWQAGRKSD 311
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 27/313 (8%), Positives = 70/313 (22%), Gaps = 64/313 (20%)
Query: 180 MRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDM---YCK 236
+ + ++ K+ ++ + + AL +
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 237 CGCLSEARELFDE--MPNKNVICWTSMVSGYVNCGQLEKARDLFDRS----PVRDIVLWT 290
L +A+ L E + + + + ++ F ++ P +
Sbjct: 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYY 314
Query: 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN 350
Y + A F+ + L P+ + + C +QGK+
Sbjct: 315 HRGQMYFILQDYKNAKEDFQ--KAQSLNPE-NVYPYIQLACLLY---KQGKF-------- 360
Query: 351 RITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELF 410
++ + + F T L G + A++ +
Sbjct: 361 ---TES------EAFF------NETKLKF----PTLPEVPTFFAEILTDRGDFDTAIKQY 401
Query: 411 SQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470
+ + + L
Sbjct: 402 DIAKR--LEEVQEKI-------------------HVGIGPLIGKATILARQSSQDPTQLD 440
Query: 471 AGLLDEAEELIRK 483
+ A +L+ K
Sbjct: 441 EEKFNAAIKLLTK 453
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 619 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.93 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.92 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.85 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.73 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.56 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.42 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.38 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.33 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.32 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.31 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.29 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.19 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.08 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.02 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.95 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.75 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.67 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.66 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.59 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.56 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.51 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.51 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.26 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.15 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.15 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.94 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.82 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.58 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.28 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.21 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.19 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.81 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.66 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.85 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.83 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.58 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.35 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.95 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.95 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.14 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.29 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.85 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.45 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.16 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.77 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.46 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.98 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.89 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.88 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.64 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.35 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.06 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.79 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.35 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.89 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 87.77 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.66 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 87.21 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.19 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.88 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.47 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.6 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.46 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 82.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.09 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.65 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 81.54 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.07 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.63 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=372.91 Aligned_cols=492 Identities=8% Similarity=-0.041 Sum_probs=273.9
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 007077 34 SHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGY 113 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 113 (619)
+.|.+..+...+..++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 677788888888888888999999999999999999999999999985 457888999999999999999999999998
Q ss_pred HHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCC-------------------CeecHHHHHHHHHcCCChhHHH
Q 007077 114 VVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDK-------------------DVVSWNVSISGHVKCMRFEDAV 174 (619)
Q Consensus 114 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~ 174 (619)
+.. .+++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+
T Consensus 143 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 864 3578899999999999999999999999965433 3678899999999999999999
Q ss_pred HHHHHhHhcCCCCCCh-hhHHHHHHHhhcCCChHHHH--HH-HHHHHHh-ccCChhHHHHHHHHHHhcCChhhHHHHhcc
Q 007077 175 DVFRRMRQGCNLMPDE-GTVVSTLSACTALKNLELGK--EI-HRYINQE-LEFTPIMGNALLDMYCKCGCLSEARELFDE 249 (619)
Q Consensus 175 ~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 249 (619)
+.|++|.+ . .|+. ..+..+...+...+..+.+. .+ +..+... ......+++.++..|.+.|++++|.++|++
T Consensus 221 ~~~~~~~~-~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 221 ECYKEALM-V--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHH-H--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHH-h--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999876 2 2433 33333333332222111111 00 2222222 233334455556677777777777777777
Q ss_pred CCC--CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 007077 250 MPN--KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFIL 324 (619)
Q Consensus 250 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 324 (619)
+.+ ++..+|+.++..|.+.|++++|..+|+++. +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 665 455555555555555555555555555442 2244555555555555555555555555554321 2234444
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCC
Q 007077 325 VALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNG 401 (619)
Q Consensus 325 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 401 (619)
..+...|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 444455555555555555555444432 22344444444444444444444444444331 23444444444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVY---QIQPK--LEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~ 476 (619)
++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 4444444444444431 1223444444444444444444444444443321 22333 3444444444444444444
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
|.+.++++... .+.+..+|..++.+|...|++++|.+.++++.+++|+++.++..++.+
T Consensus 535 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 535 AIDALNQGLLL-STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHH-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 44444444311 122233344444444444444444444444444444444444444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=358.30 Aligned_cols=482 Identities=12% Similarity=0.013 Sum_probs=402.4
Q ss_pred HHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHH
Q 007077 63 FAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNV 142 (619)
Q Consensus 63 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 142 (619)
+.+.|....+...+..+. .++...|+.++..+.+.|++++|..+++++.+. .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 344555555666655442 357788999999999999999999999999864 46778999999999999999999
Q ss_pred HHHHccCC--CCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcC--------------CCCCChhhHHHHHHHhhcCCCh
Q 007077 143 KKLFDEMP--DKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGC--------------NLMPDEGTVVSTLSACTALKNL 206 (619)
Q Consensus 143 ~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~~p~~~~~~~ll~~~~~~~~~ 206 (619)
..+|+.+. .+++.+|+.++.+|.+.|++++|+++|+++.... +.+++..+|..++.++.+.|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99999984 5788999999999999999999999999543212 2344678999999999999999
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHH---hccCCC----CCchhHHHHHHHHHhcCCHHHHHHHHc
Q 007077 207 ELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEAREL---FDEMPN----KNVICWTSMVSGYVNCGQLEKARDLFD 279 (619)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~ 279 (619)
++|...++.+.+..|.+...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999999988777888888887766655443332211 222222 233456677888999999999999999
Q ss_pred cCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChh
Q 007077 280 RSPV--RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAV 357 (619)
Q Consensus 280 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 357 (619)
++.. ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9886 789999999999999999999999999998865 3366789999999999999999999999998764 67889
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSH 434 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 434 (619)
+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 3468899999999999999999999999999873 3467899999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CCccc--HHHHHHHHHHHHHcCC
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE----NNEII--VPLYGALLSACRIYGN 508 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~ 508 (619)
.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++... +..|. ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999875 2456889999999999999999999999998632 33444 6789999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+++|++.++++.+..|+++.+|..++.+|.+.|++++|.+.++++.+
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999987
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=239.53 Aligned_cols=372 Identities=14% Similarity=0.111 Sum_probs=300.1
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC
Q 007077 161 ISGHVKCMRFEDAVDVFRRMRQGCNLMPD-EGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC 239 (619)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (619)
...+.+.|++++|.+.+..+.+ ..|+ ...+..+...+...|+++.|...++...+..|.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWR---QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 3455677888888888877755 2343 34445555566777888888888888777777788888888888888888
Q ss_pred hhhHHHHhccCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 007077 240 LSEARELFDEMPN--K-NVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQ 313 (619)
Q Consensus 240 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 313 (619)
+++|...|+++.+ | +..+|..+..++.+.|++++|...|+++. +.+...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887754 3 34467778888888888888888877654 3355677888888888999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhH
Q 007077 314 IIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASW 390 (619)
Q Consensus 314 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 390 (619)
+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++... .+..+|
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 753 2345688888888999999999999999988875 55677888899999999999999999987653 367888
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG 469 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 469 (619)
..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .+++..++..++..+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 89999999999999999999999987 554 568888889999999999999999998874 3566888999999999
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
+.|++++|.+.++++... .+....++..+...+.+.|++++|...++++.++.|+++.+|..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999988743 455566799999999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-27 Score=235.51 Aligned_cols=351 Identities=15% Similarity=0.091 Sum_probs=311.1
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHH
Q 007077 197 LSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 197 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 273 (619)
...+...|+++.|...+..+.+..|.+...+..+...+.+.|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34566789999999999999988888899999999999999999999999987764 466789999999999999999
Q ss_pred HHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 007077 274 ARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDK-FILVALLTGCAQLGALEQGKWIHGYINE 349 (619)
Q Consensus 274 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 349 (619)
|...|+++. +.+..+|..++.++.+.|++++|+..|+++.+. .|+. ..+..+...+...|++++|...+..+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999998764 446678999999999999999999999999875 4544 4667788888999999999999999988
Q ss_pred cCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHH
Q 007077 350 NRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITF 425 (619)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 425 (619)
.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 55678999999999999999999999999863 35778999999999999999999999999886 565 6788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
..+..++...|++++|...|+.+.+. .+.+...|..++.+|.+.|++++|.+.++++... .+.+..+|..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHH
Confidence 89999999999999999999999864 2334778999999999999999999999998732 45566679999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 506 YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.|++++|+..++++.+..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=239.36 Aligned_cols=184 Identities=14% Similarity=0.191 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc---------HHHHHHHHHHHHHcCCCCChh
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGA---------LEQGKWIHGYINENRITVDAV 357 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 357 (619)
..++.+|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987654 788999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELR----EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS 433 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 433 (619)
+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 46999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA 471 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 471 (619)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=233.02 Aligned_cols=203 Identities=12% Similarity=0.151 Sum_probs=175.3
Q ss_pred hHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC---------H
Q 007077 303 DEAVALFREMQIIRLKPDK-FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL---------I 372 (619)
Q Consensus 303 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 372 (619)
..+..+.+++.+.+..+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 46888999999999999999999999999999999999999999987765 7
Q ss_pred HHHHHHHHhcC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007077 373 EKALEIFYELR----EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 373 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY 506 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (619)
.+. |+.||..+|++|+.+|++.|+.++|.++|++|...+..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 987 999999999999999999999999999999999888999999999999888754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-24 Score=219.42 Aligned_cols=425 Identities=9% Similarity=-0.034 Sum_probs=284.7
Q ss_pred hHHHHHHHhHhcCChhHHHHHHccCCC--CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc
Q 007077 125 VCNSIMDMYGVLGKICNVKKLFDEMPD--KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA 202 (619)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 202 (619)
.+..+...+.+.|++++|...|+++.+ |+..+|..+..++.+.|++++|+..|+.+.+ . .+.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE-L-KPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-c-ChHHHHHHHHHHHHHHH
Confidence 344444555555555555555555542 4555555555555555555555555555544 1 12233445555555555
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC----CCchhHHHH---HHHHHhcCCHHHHH
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN----KNVICWTSM---VSGYVNCGQLEKAR 275 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---i~~~~~~g~~~~A~ 275 (619)
.|+++.|...++.+.+..+.+......++..+.+......+.+.+..+.. ++...+..- ............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 55555555555555554443333333333333333222222222211110 000000000 00000001111111
Q ss_pred HHHccCC----------CCChhhHHHHHHHHHH---cCChhHHHHHHHHHHH-----cCCC--------CCHHHHHHHHH
Q 007077 276 DLFDRSP----------VRDIVLWTAMINGYVQ---FNRFDEAVALFREMQI-----IRLK--------PDKFILVALLT 329 (619)
Q Consensus 276 ~~~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~ll~ 329 (619)
..+.... +.+...+......+.. .|++++|+..|+++.+ ..-. .+...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 1124455555555554 8999999999999987 3112 23456778888
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHH
Q 007077 330 GCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKA 406 (619)
Q Consensus 330 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 406 (619)
.+...|+++.|...+..+.+.... ...+..+..+|...|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999887633 88889999999999999999999998764 3677899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 407 LELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 407 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..++..|.+.|++++|.+.++++..
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999873 2245688888999999999999999999998752 34577899999999999999999999988762
Q ss_pred C-CCccc----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 487 E-NNEII----VPLYGALLSACRI---YGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 487 ~-~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
. +..+. ...|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 1 12221 2358999999999 999999999999999999999999999999999999999999999999874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-23 Score=212.89 Aligned_cols=367 Identities=12% Similarity=0.053 Sum_probs=271.9
Q ss_pred HhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHH
Q 007077 218 QELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTA 291 (619)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 291 (619)
...|.+...+..++..|.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++. +.+..+|..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 33445556666666777777777777777766543 345566667777777777777777776543 345678888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 007077 292 MINGYVQFNRFDEAVALFREMQIIRLKPDK----FILVAL------------LTGCAQLGALEQGKWIHGYINENRITVD 355 (619)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 355 (619)
++.+|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...+..+.+.. +.+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 176 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWD 176 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 888888888888888888888764 3443 333333 445788999999999999998865 567
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHH---
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIGV--- 428 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--- 428 (619)
..++..+..+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|+..|+++... .|+.. .+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHH
Confidence 88899999999999999999999998763 47889999999999999999999999999876 56543 34333
Q ss_pred ---------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHH
Q 007077 429 ---------LSACSHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVP 494 (619)
Q Consensus 429 ---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 494 (619)
...|...|++++|...|+.+... .|+ ..++..++.++.+.|++++|++.++++... .+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~ 330 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHH
Confidence 78889999999999999999875 344 457889999999999999999999987632 334556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH------------HHhCC-----ChHHHHHHHHHH-HhC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI------------YASAN-----RWEDVTNVRQKM-KEM 556 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m-~~~ 556 (619)
+|..++.+|...|++++|...++++.++.|+++.++..++.+ |...| +.+++.+.++++ ...
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999988844 55555 556677777763 332
Q ss_pred CCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccccc
Q 007077 557 GVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNAME 609 (619)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 609 (619)
.+...+.. ...+..++.+..+.+.+..+.+.......
T Consensus 411 ~pd~~~~~----------------~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 411 HPDNFQNE----------------EEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp CGGGCCSH----------------HHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred CCCCCCCc----------------hHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 21111000 00123455667777777777766655443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=215.92 Aligned_cols=447 Identities=10% Similarity=-0.050 Sum_probs=290.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhH
Q 007077 55 AYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYG 134 (619)
Q Consensus 55 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 134 (619)
.|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+.+... .+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34555666777777777777777776654 5666677777777777777777777777776542 34456666667777
Q ss_pred hcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 007077 135 VLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKE 211 (619)
Q Consensus 135 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 211 (619)
+.|++++|...|+++.. ++......++..+........+.+.+..+.. .+..|+...+...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~------- 156 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT-ATATPTELSTQPAKERKDKQE------- 156 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCChhhHHHhhcc-------
Confidence 77777777776665532 2223333333333333323333333322222 111111111110000000000
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC-CchhHHHHHHHHHh---cCCHHHHHHHHccCCC----
Q 007077 212 IHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK-NVICWTSMVSGYVN---CGQLEKARDLFDRSPV---- 283 (619)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~---- 283 (619)
..|+.... ..+.......... ..+..| +...+......+.. .|++++|...|+++..
T Consensus 157 --------~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 157 --------NLPSVTSM----ASFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp --------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred --------CCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00000000 0000000000000 000011 11222222222222 4555555555443221
Q ss_pred -------------CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 007077 284 -------------RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN 350 (619)
Q Consensus 284 -------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 350 (619)
.+..+|..+...+...|++++|...|+++.+.. |+...+..+...+...|+++.|...+..+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 135678888899999999999999999998864 44778888899999999999999999998876
Q ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 007077 351 RITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFI 426 (619)
Q Consensus 351 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 426 (619)
. +.+..++..+..+|...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+. .| +..++.
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 376 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPN 376 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHH
Confidence 5 55677889999999999999999999998753 36778999999999999999999999999876 44 456888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGR---AGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
.+...+...|++++|...++.+.....-.++ ...+..++.++.+ .|++++|.+.++++... .+....++..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHH
Confidence 8899999999999999999998765332333 3488999999999 99999999999987732 33445668999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
...+...|++++|...++++.++.|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999998876655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=204.74 Aligned_cols=421 Identities=10% Similarity=0.021 Sum_probs=319.7
Q ss_pred hhhHHHHHHHhHhcCChhHHHHHHccCCC---CCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHH
Q 007077 123 TYVCNSIMDMYGVLGKICNVKKLFDEMPD---KDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSA 199 (619)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~ 199 (619)
...+..+...+.+.|++++|...|+++.+ .++.+|..+..++.+.|++++|++.|+++.+ . .+.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE-I-KPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCchHHHHHHHHHH
Confidence 45677788888899999999999888763 3567888888889999999999999998876 2 23456677778888
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCC------CchhHHHHHHHHHhcCCHHH
Q 007077 200 CTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNK------NVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 273 (619)
+...|+++.|...++ .....+ ......+..+...+....|...++.+... ........+..+....+.+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG---DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 888899999988885 332211 11222344555566667788888777551 22234555666777788888
Q ss_pred HHHHHccCCCCChh---hHHHHHHHHHH--------cCChhHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHcc
Q 007077 274 ARDLFDRSPVRDIV---LWTAMINGYVQ--------FNRFDEAVALFREMQIIRLKPD--------KFILVALLTGCAQL 334 (619)
Q Consensus 274 A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~~~~~ll~~~~~~ 334 (619)
+...+......+.. ....+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88887776655443 33333333322 25889999999998864 343 23466677788899
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHH
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFS 411 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 411 (619)
|+++.|...+..+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999874 4578888999999999999999999998763 467889999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 007077 412 QMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN---- 486 (619)
Q Consensus 412 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 486 (619)
++.+. .|+ ..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++..
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99987 444 5688888999999999999999999998752 44577899999999999999999999988651
Q ss_pred -CCCcccHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 487 -ENNEIIVPLYGALLSACRIY----------GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 487 -~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.........+......+... |++++|+..++++.+..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111212244455667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 007077 556 MG 557 (619)
Q Consensus 556 ~~ 557 (619)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-22 Score=206.53 Aligned_cols=433 Identities=12% Similarity=0.012 Sum_probs=318.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH
Q 007077 52 CLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMD 131 (619)
Q Consensus 52 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 131 (619)
....|..+...+.+.|++++|+..|+++.+.. |.+..++..+..++...|++++|.+.++.+.+... .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34567888889999999999999999998874 44677888899999999999999999999988653 45678888888
Q ss_pred HhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhc-----CCCCCChhhHHHHHHHhhcCCCh
Q 007077 132 MYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQG-----CNLMPDEGTVVSTLSACTALKNL 206 (619)
Q Consensus 132 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~~~~~ll~~~~~~~~~ 206 (619)
+|...|++++|...|+.+ ..++...+..+..+...+....|...++.+... ....|+
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~----------------- 163 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS----------------- 163 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC-----------------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch-----------------
Confidence 999999999999988643 222223333344555566667888888887441 011122
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCch---hHHHHHHHHHh--------cCCHHHHH
Q 007077 207 ELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVI---CWTSMVSGYVN--------CGQLEKAR 275 (619)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~ 275 (619)
...+..+....+.+.+...+......+.. ....+...+.. .|++++|.
T Consensus 164 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 164 ---------------------NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ---------------------HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ---------------------HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 12223344445555555555554443222 22222222221 24677777
Q ss_pred HHHccCCCC---C-------hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 007077 276 DLFDRSPVR---D-------IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHG 345 (619)
Q Consensus 276 ~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 345 (619)
..|+++... + ..++..+...+...|++++|+..|+++.+. .|+...+..+...+...|+++.|...+.
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777665422 2 225667778888999999999999999885 5667788889999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 007077 346 YINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD- 421 (619)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~- 421 (619)
.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+. .|+
T Consensus 301 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~ 377 (537)
T 3fp2_A 301 KAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTL 377 (537)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 998875 56788899999999999999999999998763 36778999999999999999999999999987 444
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHhhCCCC
Q 007077 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRA----------GLLDEAEELIRKIPNE 487 (619)
Q Consensus 422 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 487 (619)
..++..+...+...|++++|...|+.+.+...-.++ ...+.....+|.+. |++++|...++++...
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 568888899999999999999999998765321222 23345566778888 9999999999988732
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
.+.+..+|..+...+...|++++|...++++.++.|+++....
T Consensus 458 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 458 -DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3445567999999999999999999999999999999887543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-21 Score=198.47 Aligned_cols=346 Identities=11% Similarity=-0.015 Sum_probs=215.8
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHH
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDM 233 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 233 (619)
+..|..+...+.+.|++++|+.+|+.+.+ ..+.+...+..+..++...|+++.|...++.+.+..|.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44566666777777777777777777655 2234556666666677777777777777777777666677777788888
Q ss_pred HHhcCChhhHHHHhccCCC--CC-c---hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 007077 234 YCKCGCLSEARELFDEMPN--KN-V---ICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307 (619)
Q Consensus 234 ~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (619)
|.+.|++++|.+.|+++.+ |+ . ..|..++..+.. ..+..+...+...|++++|+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877755 22 2 344444333111 112223334555555566666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---
Q 007077 308 LFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--- 384 (619)
Q Consensus 308 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 384 (619)
.|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 655555432 2234455555555555566666655555555442 34455566666666666666666666665542
Q ss_pred CChhhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007077 385 KDAASWTSI------------ICGLAMNGKINKALELFSQMISGGAKPD-----DITFIGVLSACSHGGLVDEGRRFFNT 447 (619)
Q Consensus 385 ~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~ 447 (619)
.+...+..+ +..+...|++++|+..|+++.+. .|+ ...+..+...+.+.|++++|...++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 123333333 67778888888888888888775 454 23567777788888888888888888
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH------------HHHcC-----CHH
Q 007077 448 MTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA------------CRIYG-----NVD 510 (619)
Q Consensus 448 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~ 510 (619)
+... .+.+...|..++.+|...|++++|.+.++++... .+.+..++..+..+ |...| +.+
T Consensus 321 a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 321 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 7754 1335677888888888888888888888877632 33334445555532 23333 566
Q ss_pred HHHHHHHH-HhccCCCCc
Q 007077 511 MGEKLAAL-LEKIESKDS 527 (619)
Q Consensus 511 ~a~~~~~~-~~~~~p~~~ 527 (619)
++.+.+++ +.+..|++.
T Consensus 398 ~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 77888876 667777643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-19 Score=177.71 Aligned_cols=322 Identities=10% Similarity=0.010 Sum_probs=215.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChh
Q 007077 224 PIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFD 303 (619)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 303 (619)
+..+..+...+.+.|++++|...|+++.+. .+.+..+|..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------------------~p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------------------------DPDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------------------CcccHHHHHHHHHHHHHccCHH
Confidence 344555666666666666666666655330 1223344444444444444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC---CChhHHHH------------HHHHHHh
Q 007077 304 EAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT---VDAVVATA------------LIEMYAK 368 (619)
Q Consensus 304 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~------------l~~~~~~ 368 (619)
+|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. + .+...+.. +...+..
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444321 1123344444444444445555544444444432 1 12222222 3567888
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 369 CGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
.|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887653 366778888888888888888888888888762 334567788888888888899888888
Q ss_pred HHhHHhcCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHhhCCC-CCCcccH--HHHHHHHHHHHHcCCHH
Q 007077 446 NTMTEVYQIQPKLEHYG------------CLIDLLGRAGLLDEAEELIRKIPN-ENNEIIV--PLYGALLSACRIYGNVD 510 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--~~~~~l~~~~~~~g~~~ 510 (619)
+...+.. +.+...+. .++..+.+.|++++|.+.++++.. .|..+.. ..+..+...+...|+++
T Consensus 212 ~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 8887642 22233222 336678899999999999988763 2222221 23556778899999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHH
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIY 590 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (619)
+|...++++.+..|+++.++..++.+|...|++++|.+.++++.+ .+|....+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~ 343 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHH
Confidence 999999999999999999999999999999999999999999886 256667778
Q ss_pred HHHHHHHHHHHHhc
Q 007077 591 SMLDRMAKTLLDSK 604 (619)
Q Consensus 591 ~~l~~~~~~~~~~~ 604 (619)
..+.++...++++.
T Consensus 344 ~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 344 EGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888777654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-19 Score=176.35 Aligned_cols=314 Identities=12% Similarity=-0.017 Sum_probs=244.1
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhc
Q 007077 189 DEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNC 268 (619)
Q Consensus 189 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 268 (619)
|...+..+...+...|+++.|...++.+.+..|.++.++..+...+...|++++|...|+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 34567777888999999999999999999998889999999999999999999999988775430
Q ss_pred CCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---C-HHHHHHH------------HHHHH
Q 007077 269 GQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKP---D-KFILVAL------------LTGCA 332 (619)
Q Consensus 269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~-~~~~~~l------------l~~~~ 332 (619)
.+.+...|..+...+...|++++|+..|+++.+. .| + ...+..+ ...+.
T Consensus 67 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 67 -------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAF 131 (359)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455666666666666666666666666553 33 2 2222222 46677
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHH
Q 007077 333 QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALEL 409 (619)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 409 (619)
..|++++|...+..+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888887764 55677888888899999999999999988764 3677888899999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhc
Q 007077 410 FSQMISGGAKPDD-ITFI------------GVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-L----EHYGCLIDLLGRA 471 (619)
Q Consensus 410 ~~~m~~~g~~p~~-~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~ 471 (619)
|++..+. .|+. ..+. .+...+...|++++|...++.+.... |+ . ..+..+..++.+.
T Consensus 211 ~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHc
Confidence 9998876 4443 2222 23566888999999999999998753 43 2 3355688899999
Q ss_pred CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 472 GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 472 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
|++++|.+.+++.... .+.+..+|..+...+...|++++|...++++.+++|+++.++..+..++..
T Consensus 286 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999988732 444566799999999999999999999999999999999988888876554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-19 Score=170.89 Aligned_cols=285 Identities=14% Similarity=0.122 Sum_probs=105.5
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 007077 34 SHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGY 113 (619)
Q Consensus 34 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 113 (619)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6789999999999997664 899999999999999999999975 25788999999999999999999998888
Q ss_pred HHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhH
Q 007077 114 VVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTV 193 (619)
Q Consensus 114 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 193 (619)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+. .|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------CH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------hH
Confidence 7774 45678899999999999999999988864 677799999999999999999999999762 33
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHH
Q 007077 194 VSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 194 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (619)
..+++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.
T Consensus 152 ----------------------------------~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 152 ----------------------------------GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp ----------------------------------HHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------------HHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHH
Confidence 55666666666666666666666 255666666666666666666
Q ss_pred HHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cCcHHHHHHHHHHHHHcC
Q 007077 274 ARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ--LGALEQGKWIHGYINENR 351 (619)
Q Consensus 274 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~ 351 (619)
|......+. .++.....++..|.+.|++++|+.+++...... +-....|+-+.-++++ .+++.+..+.|.. +.+
T Consensus 196 A~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~in 271 (449)
T 1b89_A 196 AQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVN 271 (449)
T ss_dssp HHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSC
T ss_pred HHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--Hhc
Confidence 655555433 333334457777777777777777777765432 2233344444444432 2333333333321 112
Q ss_pred CCC------ChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 352 ITV------DAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 352 ~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
+++ +...|..++-.|...++++.|....-+
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 222 355677777777777887777665443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-16 Score=165.33 Aligned_cols=482 Identities=12% Similarity=0.116 Sum_probs=335.3
Q ss_pred HHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCC---
Q 007077 9 AQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQSPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVS--- 85 (619)
Q Consensus 9 ~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--- 85 (619)
...+..| ..++.++|+|...|. ..++ .+++.+..-+ .-=..++.-||...|+..|.-.|++ |..
T Consensus 863 E~~~~~g-~~~~~~hnalakiyi--d~n~--npe~fL~~n~----~yd~~~vgkyce~rDp~la~iay~~----g~~d~e 929 (1630)
T 1xi4_A 863 EARIHEG-CEEPATHNALAKIYI--DSNN--NPERFLRENP----YYDSRVVGKYCEKRDPHLACVAYER----GQCDLE 929 (1630)
T ss_pred HHHHhCC-CCCHHHHHHHHHHHh--ccCC--CHHHHhhccC----cccHHHHHHHHHhcCcchHHHHhcc----cCCcHH
Confidence 3334444 468889999999998 4332 3334443322 1112345555655565555555543 211
Q ss_pred -----CCcccHHHHHHHHhccCChhH-----------HHHHHHHHHHhCC--CCChhhHHHHHHHhHhcCChhHHHHHHc
Q 007077 86 -----PDNFTYPFVFKAVGWLGEVKK-----------GEKVHGYVVKTGL--EFDTYVCNSIMDMYGVLGKICNVKKLFD 147 (619)
Q Consensus 86 -----p~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 147 (619)
-....|....+-+.+..+.+. =+++.++.....+ ..++.-....+..|...|...+|.++++
T Consensus 930 li~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLE 1009 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLE 1009 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHH
Confidence 111123333333333322221 1233333333222 1233344566778888899999999988
Q ss_pred cCCC-CC-----eecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 007077 148 EMPD-KD-----VVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELE 221 (619)
Q Consensus 148 ~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 221 (619)
+..- ++ ...-+.++.+..+. +..+..+..+.... .....+...|...|.+++|..+++....
T Consensus 1010 Kivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~~--- 1077 (1630)
T 1xi4_A 1010 KIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFEEAFAIFRKFDV--- 1077 (1630)
T ss_pred HHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcCC---
Confidence 8762 22 23455566666666 45666666655532 1234466778889999999999988531
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCC
Q 007077 222 FTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNR 301 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 301 (619)
.....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. .|...|..++.++.+.|+
T Consensus 1078 -~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1078 -NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred -HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCC
Confidence 11112222 337888999999998774 4667889999999999999999999775 677888899999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 302 FDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 302 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
+++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+..+...|...|++++|..+|..
T Consensus 1150 yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 999999999877754 33333445888899999888644442 2 34566777899999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH
Q 007077 382 LREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHY 461 (619)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 461 (619)
+ ..|..++.+|.+.|++++|++.+++. .+..+|..+..+|...|++..|......+ ..+...+
T Consensus 1221 A-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deL 1283 (1630)
T 1xi4_A 1221 V-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADEL 1283 (1630)
T ss_pred h-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHH
Confidence 5 58999999999999999999999976 35588999999999999999998876532 3455677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCC-----CCcchHHHHH
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI--YGNVDMGEKLAALLEKIES-----KDSSFHTLLA 534 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~ 534 (619)
..++..|.+.|.+++|+.+++....- ++.....|+-+...+.+ -++..++.+.|..-..+.| .+.+.|..++
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~L-eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc-ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 89999999999999999999888733 34555567666666655 4577788888887777766 7888899999
Q ss_pred HHHHhCCChHHHHHHH
Q 007077 535 NIYASANRWEDVTNVR 550 (619)
Q Consensus 535 ~~~~~~g~~~~A~~~~ 550 (619)
.+|.+.|+|+.|....
T Consensus 1363 ~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHhcccHHHHHHHH
Confidence 9999999999998533
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-18 Score=165.03 Aligned_cols=255 Identities=13% Similarity=0.052 Sum_probs=190.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALI 363 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (619)
+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|...+..+.+.. +.+...+..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 44556666677777777777777777776643 224456666777777777 7777777777777654 44566777888
Q ss_pred HHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 007077 364 EMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVD 439 (619)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 439 (619)
.+|...|++++|...|+++.+ .+...+..+...|...|++++|...+++..+. .|+ ..++..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHH
Confidence 888888888888888887653 34567777888888888888888888888876 444 567788888888889999
Q ss_pred HHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 007077 440 EGRRFFNTMTEVYQ-------IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 440 ~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (619)
+|...++.+..... .+.....+..+..+|.+.|++++|.+.+++.... .+.+...|..+...+...|++++|
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHH
Confidence 99888888876421 1334568888899999999999999999887622 223445588888899999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHH-hCCChH
Q 007077 513 EKLAALLEKIESKDSSFHTLLANIYA-SANRWE 544 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 544 (619)
...++++.++.|+++.++..++.++. ..|+.+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999988889988884 455543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-19 Score=173.30 Aligned_cols=279 Identities=14% Similarity=0.006 Sum_probs=211.6
Q ss_pred cCCHHHHHH-HHccCC---CC----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHH
Q 007077 268 CGQLEKARD-LFDRSP---VR----DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQ 339 (619)
Q Consensus 268 ~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 339 (619)
.|++++|.. .|++.. +. +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455666665 555332 11 34557777777888888888888888877653 3355577777777888888888
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHH---------------HHHHHHhCC
Q 007077 340 GKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTS---------------IICGLAMNG 401 (619)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------l~~~~~~~g 401 (619)
|...+..+.+.. +.+..++..+..+|...|++++|...|+++... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 888888777765 556777778888888888888888888876532 2222211 133334889
Q ss_pred ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007077 402 KINKALELFSQMISGGAKPD---DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 478 (619)
++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+... .+.+...+..++.+|.+.|++++|.
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999987 444 678889999999999999999999999875 2345788999999999999999999
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhCCChHHHH
Q 007077 479 ELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD-----------SSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 547 (619)
+.++++... .+....++..+...+...|++++|...++++.++.|++ ..+|..++.+|...|++++|.
T Consensus 272 ~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999988632 34455679999999999999999999999999999887 788999999999999999999
Q ss_pred HHHHHH
Q 007077 548 NVRQKM 553 (619)
Q Consensus 548 ~~~~~m 553 (619)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 887743
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-17 Score=161.77 Aligned_cols=267 Identities=10% Similarity=0.031 Sum_probs=228.9
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3466778888999999999999999999998754 2334466677788899999999999999998875 5677889999
Q ss_pred HHHHHhCC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007077 363 IEMYAKCG-LIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGL 437 (619)
Q Consensus 363 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 437 (619)
...+...| ++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhh
Confidence 99999999 99999999998764 35778999999999999999999999999987 444 4677778899999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----C----CcccHHHHHHHHHHHHHcCCH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE----N----NEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~~~~l~~~~~~~g~~ 509 (619)
+++|...++.+.+. .+.+...+..++..+.+.|++++|.+.++++... + .+....+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999863 3445788999999999999999999999876521 1 133345699999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=173.49 Aligned_cols=285 Identities=11% Similarity=0.139 Sum_probs=143.4
Q ss_pred HhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007077 235 CKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQI 314 (619)
Q Consensus 235 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 314 (619)
-+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|...|..++.++...|++++|+.+++..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 37788999999999996654 8999999999999999999999764 5777999999999999999999998877766
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHH
Q 007077 315 IRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSII 394 (619)
Q Consensus 315 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 394 (619)
. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+.+.|...|++++|...|..+ ..|..++
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 3 4557788899999999999999888774 367779999999999999999999999987 5899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 474 (619)
.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.+.|++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999988 26789999999999999999996654432 23344456799999999999
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHhCCChHHHH
Q 007077 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIY--GNVDMGEKLAALLEKIES-----KDSSFHTLLANIYASANRWEDVT 547 (619)
Q Consensus 475 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~ 547 (619)
++|+.+++..... ++....+|+-+.-++++. ++..+.++.|..-..+.| .+.+.|..++.+|...|+|+.|.
T Consensus 224 eEai~lLe~aL~l-e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999988743 355666788887777664 567777777777777777 78899999999999999999997
Q ss_pred HHH
Q 007077 548 NVR 550 (619)
Q Consensus 548 ~~~ 550 (619)
...
T Consensus 303 ~tm 305 (449)
T 1b89_A 303 ITM 305 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-16 Score=161.24 Aligned_cols=364 Identities=11% Similarity=0.003 Sum_probs=254.0
Q ss_pred ChhhHHHHHHHhHh----cCChhHHHHHHccCCC-CCeecHHHHHHHHHc----CCChhHHHHHHHHhHhcCCCCCChhh
Q 007077 122 DTYVCNSIMDMYGV----LGKICNVKKLFDEMPD-KDVVSWNVSISGHVK----CMRFEDAVDVFRRMRQGCNLMPDEGT 192 (619)
Q Consensus 122 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~ 192 (619)
+...+..+...|.. .+++++|...|++..+ .++..+..|...|.. .+++++|+..|++..+ .+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~------- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-KG------- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT-------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC-------
Confidence 44555555555655 5666666666655432 244455555555555 5555556555555544 22
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCChhhHHHHhccCCC-CCchhHHHHHHHHHh
Q 007077 193 VVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCK----CGCLSEARELFDEMPN-KNVICWTSMVSGYVN 267 (619)
Q Consensus 193 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 267 (619)
++..+..|...|.. .+++++|.+.|++..+ .+...+..+...|..
T Consensus 110 ------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 110 ------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFE 159 (490)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 23333444444444 4455555555544433 233344445555544
Q ss_pred ----cCCHHHHHHHHccCC-CCChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c
Q 007077 268 ----CGQLEKARDLFDRSP-VRDIVLWTAMINGYVQ----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----L 334 (619)
Q Consensus 268 ----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 334 (619)
.++.++|...|++.. ..+..++..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .
T Consensus 160 g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 160 GDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 556666666665433 2366777888888887 789999999999888765 45566666666665 7
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----CCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhC-----CChH
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAK----CGLIEKALEIFYELREK-DAASWTSIICGLAMN-----GKIN 404 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~ 404 (619)
++.++|...++...+.+ +...+..+..+|.. .++.++|...|++..+. +...+..+...|... ++++
T Consensus 237 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 88999999999888764 45667777888887 89999999999987654 677888888888887 8999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 007077 405 KALELFSQMISGGAKPDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDEA 477 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 477 (619)
+|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..+...|.. .+++++|
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 3456666666776656 889999999998874 467788889999988 8999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESK---DSSFHTLLANIYAS 539 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 539 (619)
.+.|++....++ ...+..+...|.. .+++++|...|+++.+.+|+ ++.+...++.++..
T Consensus 387 ~~~~~~A~~~~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 387 AIWMRKAAEQGL---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999875543 3448888888888 89999999999999999854 66666667666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-15 Score=157.33 Aligned_cols=353 Identities=12% Similarity=0.063 Sum_probs=272.8
Q ss_pred CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCC--CCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHH
Q 007077 153 DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCN--LMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNAL 230 (619)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 230 (619)
|+.--...+.+|...|.+.+|++++++... .+ +.-+...-+.++.+..+. +..........+.... ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHH
Confidence 333445677888899999999999999864 21 112223344455444444 5555555555544212 3447
Q ss_pred HHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHH
Q 007077 231 LDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFR 310 (619)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 310 (619)
...+...|.+++|..+|++.... ....+.+ +...+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 78889999999999999997521 1112222 227889999999999774 46788999999999999999999997
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhH
Q 007077 311 EMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASW 390 (619)
Q Consensus 311 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 390 (619)
+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 64 466778889999999999999999999888765 44444556999999999999655443 45577788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..++..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhh
Confidence 88999999999999999999985 37899999999999999999998765 345799999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC--CChHHHHH
Q 007077 471 AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASA--NRWEDVTN 548 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~ 548 (619)
.|++..|......+.. ....+..++..|.+.|.+++|+.+++...+++|.+...+..|+.+|.+. ++..++.+
T Consensus 1263 ~~Ef~LA~~cgl~Iiv-----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhHHHHHHHHHHhhhc-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999998765432 2233778999999999999999999999999999999998888888775 45555555
Q ss_pred HHH
Q 007077 549 VRQ 551 (619)
Q Consensus 549 ~~~ 551 (619)
+|.
T Consensus 1338 ~f~ 1340 (1630)
T 1xi4_A 1338 LFW 1340 (1630)
T ss_pred HHH
Confidence 554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-18 Score=168.29 Aligned_cols=263 Identities=11% Similarity=-0.040 Sum_probs=211.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888899999999999999888753 3456688888888899999999999999888865 556788888999
Q ss_pred HHHhCCCHHHHHHHHHhcCCCC---h----------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 007077 365 MYAKCGLIEKALEIFYELREKD---A----------ASWTSIICGLAMNGKINKALELFSQMISGGAK-PDDITFIGVLS 430 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~~---~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 430 (619)
+|...|++++|...|+++.+.+ . ..+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998876432 2 22344578899999999999999999987321 14678899999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...|++++|...|+.+.+. .+.+..+|..++.+|.+.|++++|++.|+++... .+.+..+|..+...|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999875 2445789999999999999999999999988732 3444667999999999999999
Q ss_pred HHHHHHHHHhccCCC------------CcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 511 MGEKLAALLEKIESK------------DSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+|...++++.++.|+ +..+|..++.++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988877 367789999999999999998877665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-16 Score=162.57 Aligned_cols=416 Identities=9% Similarity=0.031 Sum_probs=279.9
Q ss_pred HHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--C-CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 007077 111 HGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--K-DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLM 187 (619)
Q Consensus 111 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 187 (619)
++..++.. +-+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++... ..
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KV 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC
Confidence 34444433 346778888888 4788999999999998875 3 455788999999999999999999999966 34
Q ss_pred CChhhHHHHHHHh-hcCCChHHHHH----HHHHHHHhc---cCChhHHHHHHHHHHh---------cCChhhHHHHhccC
Q 007077 188 PDEGTVVSTLSAC-TALKNLELGKE----IHRYINQEL---EFTPIMGNALLDMYCK---------CGCLSEARELFDEM 250 (619)
Q Consensus 188 p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~~---~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 250 (619)
|+...|...+... ...|+.+.|.+ +++.....+ +.+...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7776666666432 34566666654 666666542 3456677777776654 67888888888877
Q ss_pred CC-CCc---hhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH------HcC---C
Q 007077 251 PN-KNV---ICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQ------IIR---L 317 (619)
Q Consensus 251 ~~-~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~ 317 (619)
.+ |.. ..|..........|. ..+..++ . .+.+++..|..++++.. +.. +
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l---------------~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKMI---------------E--DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHH---------------H--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHHH---------------H--HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 65 221 122221111000000 0011111 0 12344566666655421 111 2
Q ss_pred CCCH--------HHHHHHHHHHHc----cCcH----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------CCCHH-
Q 007077 318 KPDK--------FILVALLTGCAQ----LGAL----EQGKWIHGYINENRITVDAVVATALIEMYAK-------CGLIE- 373 (619)
Q Consensus 318 ~p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~- 373 (619)
+|+. ..|...+..... .++. +.+..++++++... +.++.+|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 3431 233333322221 1222 36667788777753 5677888888887775 68876
Q ss_pred ------HHHHHHHhcCC---C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHH
Q 007077 374 ------KALEIFYELRE---K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--ITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 374 ------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a 441 (619)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++++. .|+. ..|...+..+.+.|++++|
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999998764 2 5778888999999999999999999999886 6653 4788888888888999999
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHH-HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 442 RRFFNTMTEVYQIQPK-LEHYGCLIDL-LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
..+|+...+. +|+ ...|...+.. +...|++++|..+|++.... .+.+...|..++..+.+.|+.++|..+|+++
T Consensus 376 ~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 376 RMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 9999998753 333 3333332222 34689999999999877632 2334556888998888999999999999999
Q ss_pred hccCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 520 EKIESKDSS----FHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 520 ~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....|.++. +|...+......|+.+.+..+.+++.+.
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888776654 6777788888889999999999888753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-17 Score=153.23 Aligned_cols=270 Identities=10% Similarity=0.042 Sum_probs=200.3
Q ss_pred HHhcCCHHHHHHHHccCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHH
Q 007077 265 YVNCGQLEKARDLFDRSPVRDI----VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQG 340 (619)
Q Consensus 265 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 340 (619)
....|++..|+..+++....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3345566666666554433221 2334456677777777777765543 1345556677777777777777777
Q ss_pred HHHHHHHHHcCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 007077 341 KWIHGYINENRI-TVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAK 419 (619)
Q Consensus 341 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 419 (619)
.+.++.+...+. +.+...+..+...|...|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 777777776653 44566677788889999999999999998 567889999999999999999999999999987 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 420 PDDITF---IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 420 p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.. .++.+..++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD-KDSGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Confidence 664311 12334445669999999999999985 356788999999999999999999999999773 244455669
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007077 497 GALLSACRIYGNVDM-GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
..++..+...|+.++ +.++++++.++.|+++.+. +...+.+.++++..-
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 999999999999876 6789999999999998743 445566666666543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-16 Score=161.81 Aligned_cols=423 Identities=10% Similarity=0.015 Sum_probs=294.3
Q ss_pred HHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--CC
Q 007077 76 FSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--KD 153 (619)
Q Consensus 76 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 153 (619)
|++..+.. |-+...|..++.. .+.|+++.|..+++++.+. .+.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 44544442 3466788888884 7789999999999999974 345667899999999999999999999999875 66
Q ss_pred eecHHHHHHHH-HcCCChhHHHH----HHHHhHhcCCCCCC-hhhHHHHHHHhhc---------CCChHHHHHHHHHHHH
Q 007077 154 VVSWNVSISGH-VKCMRFEDAVD----VFRRMRQGCNLMPD-EGTVVSTLSACTA---------LKNLELGKEIHRYINQ 218 (619)
Q Consensus 154 ~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 218 (619)
+..|...+... ...|+.++|.+ +|+......|..|+ ...|...+..... .|+++.|..+++.+++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66777766533 35688877765 77776553565554 4456666555443 6788999999999888
Q ss_pred hccCCh--hHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHH----------HHccC---CC
Q 007077 219 ELEFTP--IMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARD----------LFDRS---PV 283 (619)
Q Consensus 219 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----------~~~~~---~~ 283 (619)
.|.+. ..|..........|. ..+..++.. +.++++.|.. .+++. .+
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred -chhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 33322 333333222111111 111121111 1122333333 23321 12
Q ss_pred CC--------hhhHHHHHHHHHHc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCcHH--
Q 007077 284 RD--------IVLWTAMINGYVQF----NRF----DEAVALFREMQIIRLKPDKFILVALLTGCAQ-------LGALE-- 338 (619)
Q Consensus 284 ~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-- 338 (619)
|+ ...|...+...... ++. .++..+|+++.... +-+...|......+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 22 24555555433222 232 47788999887742 3355567666666664 68876
Q ss_pred -----HHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-Ch-hhHHHHHHHHHhCCChHHHHHH
Q 007077 339 -----QGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--K-DA-ASWTSIICGLAMNGKINKALEL 409 (619)
Q Consensus 339 -----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~g~~~~A~~~ 409 (619)
.|..+++...+.-.+.+..++..++..+.+.|++++|..+|+++.+ + +. ..|..++..+.+.|+.++|.++
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 8999999988743456788999999999999999999999998764 3 33 4799999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 007077 410 FSQMISGGAKPD-DITFIGVLSA-CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE 487 (619)
Q Consensus 410 ~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 487 (619)
|++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....
T Consensus 379 ~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 379 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999986 443 2333332222 335899999999999998753 345789999999999999999999999988743
Q ss_pred -CCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 488 -NNEI--IVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 488 -~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+..| ....|...+......|+.+.+..+.+++.+..|+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3332 3447888898889999999999999999998885
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-16 Score=157.45 Aligned_cols=336 Identities=12% Similarity=-0.020 Sum_probs=278.3
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHh----cCChhhHHHHhccCCC-CCchhHHHHHHHHHh----cCCHHH
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCK----CGCLSEARELFDEMPN-KNVICWTSMVSGYVN----CGQLEK 273 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~ 273 (619)
.++++.|...++...+. .++..+..|...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 56667777777666554 456677788888888 8999999999988765 466678888888888 889999
Q ss_pred HHHHHccCCC-CChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHH
Q 007077 274 ARDLFDRSPV-RDIVLWTAMINGYVQ----FNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----LGALEQGKWIH 344 (619)
Q Consensus 274 A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 344 (619)
|...|++... .+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+
T Consensus 134 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 134 SVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 9999987653 367788889988987 789999999999998865 56677778888877 89999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHh----CCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 007077 345 GYINENRITVDAVVATALIEMYAK----CGLIEKALEIFYELRE-KDAASWTSIICGLAM----NGKINKALELFSQMIS 415 (619)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 415 (619)
+...+.+ ++..+..+..+|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 9998875 56778888888886 8999999999998765 467788888888888 8999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhCCCC
Q 007077 416 GGAKPDDITFIGVLSACSHG-----GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG---LLDEAEELIRKIPNE 487 (619)
Q Consensus 416 ~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 487 (619)
.| +...+..+...+... ++.++|..+|+...+. .+...+..+...|...| ++++|++.|++....
T Consensus 288 ~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 288 QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 75 345666677777766 8999999999998874 34567888888888767 899999999998855
Q ss_pred CCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 007077 488 NNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 558 (619)
++ ...+..+...|.. .+++++|...++++.+.. ++.++..|+.+|.. .+++++|..++++..+.+.
T Consensus 361 ~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 361 GE---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 44 3448899999988 899999999999998754 67789999999999 8999999999999988763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=165.39 Aligned_cols=293 Identities=11% Similarity=-0.006 Sum_probs=226.6
Q ss_pred HHHcCChhHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC
Q 007077 296 YVQFNRFDEAVA-LFREMQIIRL-KP--DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL 371 (619)
Q Consensus 296 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 371 (619)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...+..+.+.. +.+..++..+..+|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8886654321 11 34467788889999999999999999999875 6678899999999999999
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHH
Q 007077 372 IEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI-TFIG---------------VLSAC 432 (619)
Q Consensus 372 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~---------------ll~~~ 432 (619)
+++|...|+++.+ .+..+|..+...|...|++++|+..|+++... .|+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998763 47889999999999999999999999999987 44432 2211 23334
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (619)
...|++++|...++.+.+.....++..++..++.+|.+.|++++|++.++++... .+.+..+|..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 4889999999999999876322225789999999999999999999999987732 334456799999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHH
Q 007077 513 EKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSM 592 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (619)
+..++++.++.|+++.++..++.+|.+.|++++|.+.++++.+..... ... ....+|....++..
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~-------------~~~~~~~~~~~~~~ 335 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS--RGP-------------RGEGGAMSENIWST 335 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------------CCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCc-------------cccccchhhHHHHH
Confidence 999999999999999999999999999999999999999997642211 000 01136777889999
Q ss_pred HHHHHHHHHHhcccc
Q 007077 593 LDRMAKTLLDSKQNA 607 (619)
Q Consensus 593 l~~~~~~~~~~~~~~ 607 (619)
+..++..+.+..+..
T Consensus 336 l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 336 LRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHTCGGGHH
T ss_pred HHHHHHHhCChHhHH
Confidence 999998887766553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-17 Score=157.40 Aligned_cols=263 Identities=11% Similarity=-0.068 Sum_probs=203.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM 365 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (619)
...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3456666777777777777777777776643 2345566667777777777777777777777654 4566677777777
Q ss_pred HHhCCCHHHHHHHHHhcCCC---ChhhHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007077 366 YAKCGLIEKALEIFYELREK---DAASWTSI--------------IC-GLAMNGKINKALELFSQMISGGAKPDDITFIG 427 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 427 (619)
|...|++++|.+.|+++.+. +...+..+ .. .+...|++++|...++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 88888888888887776532 23333333 22 3777889999999999998873 235678888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
+...+...|++++|...++.+... .+.+...+..++..|...|++++|.+.++++... .+.+..+|..+...+...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999875 2345788999999999999999999999987632 3344556999999999999
Q ss_pred CHHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESK------------DSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
++++|...++++.+..|+ ++.++..++.+|...|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999 78889999999999999999999887543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=151.47 Aligned_cols=249 Identities=8% Similarity=-0.009 Sum_probs=204.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC
Q 007077 293 INGYVQFNRFDEAVALFREMQIIRLKPDK--FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCG 370 (619)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 370 (619)
+.-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999987644 34443 3556678899999999999876643 24667778889999999999
Q ss_pred CHHHHHHHHHhcCC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 371 LIEKALEIFYELRE----K-DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 371 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
+.++|++.++++.. | +...+..+...+.+.|++++|++.+++ ..+..++..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 567788888999999999999999987 456678888999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 446 NTMTEVYQIQPKLEH---YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
+.+.+. .|+... ...++..+...|++++|..+|+++... .+.+..+|+.+..++...|++++|+..++++.+.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999875 365321 123345555669999999999998843 5556777999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhCCChHH-HHHHHHHHHhCC
Q 007077 523 ESKDSSFHTLLANIYASANRWED-VTNVRQKMKEMG 557 (619)
Q Consensus 523 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 557 (619)
+|+++.++..++.++...|++++ +.++++++.+..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999987 578999888743
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-16 Score=158.69 Aligned_cols=358 Identities=13% Similarity=0.015 Sum_probs=194.4
Q ss_pred eecHHHHHHHHHcCCChhHHHHHHHHhHhc----CC--CCC-ChhhHHHHHHHhhcCCChHHHHHHHHHHHHh---c---
Q 007077 154 VVSWNVSISGHVKCMRFEDAVDVFRRMRQG----CN--LMP-DEGTVVSTLSACTALKNLELGKEIHRYINQE---L--- 220 (619)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--- 220 (619)
...||.+...+...|++++|++.|++..+. .+ ..| ...+|..+..++...|++++|...++.+.+. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777778888888777765330 00 111 2234445555555555555555555444332 0
Q ss_pred --cCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHH
Q 007077 221 --EFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMING 295 (619)
Q Consensus 221 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 295 (619)
+..+.++..+..++.+.| .+++++|...|++.. +.++..+..+..+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~-----------------------------~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCG-----------------------------GNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHC-----------------------------TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHc-----------------------------cccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 011122222222222221 223455555554432 2234444444333
Q ss_pred ---HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 296 ---YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----LGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 296 ---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
+...++.++|++.+++..+.. +.+...+..+...+.. .++.++|...++...+.. +.+..++..+...|..
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 233456666666666665532 1223334333333332 345566666666665553 4455566666777777
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHh-------------------CCChHHHHHHHHHHHHCCCCCC-HHHH
Q 007077 369 CGLIEKALEIFYELRE---KDAASWTSIICGLAM-------------------NGKINKALELFSQMISGGAKPD-DITF 425 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~-~~~~ 425 (619)
.|++++|...|++..+ .+..++..+...|.. .+.+++|...|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 7777777777766542 234455555444432 23356788888887765 444 4577
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHH-HHhcCCHHHHHHHHhhCCC-CCCcccHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE----HYGCLIDL-LGRAGLLDEAEELIRKIPN-ENNEIIVPLYGAL 499 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l 499 (619)
..+...+...|++++|...|++.... .|+.. .+..+... +...|++++|++.|++... .|.... +
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~---~--- 408 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE---K--- 408 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---H---
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---H---
Confidence 78888889999999999999988754 33322 23333332 3467899999999887652 222211 1
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
.+....+.+++++..+.+|+++.+|..++.+|...|++++|.+.+++..+.+..
T Consensus 409 ------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 409 ------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp ------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred ------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 222345567788888999999999999999999999999999999999876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=157.35 Aligned_cols=233 Identities=9% Similarity=-0.076 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 007077 320 DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICG 396 (619)
Q Consensus 320 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 396 (619)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 66788999999999999999999999998763 468899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDI-----------TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+++++.......++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999886 45432 223347788999999999999999987633223688999999
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
..|.+.|++++|++.++++... .+.+..+|..+..+|...|++++|+..++++.++.|+++.++..++.+|...|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988732 344566799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 007077 546 VTNVRQKMKEM 556 (619)
Q Consensus 546 A~~~~~~m~~~ 556 (619)
|.+.++++.+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-15 Score=151.16 Aligned_cols=382 Identities=10% Similarity=-0.014 Sum_probs=192.9
Q ss_pred cccHHHHHHHHhccCChhHHHHHHHHHHHh-----C--CCC-ChhhHHHHHHHhHhcCChhHHHHHHccCCC-------C
Q 007077 88 NFTYPFVFKAVGWLGEVKKGEKVHGYVVKT-----G--LEF-DTYVCNSIMDMYGVLGKICNVKKLFDEMPD-------K 152 (619)
Q Consensus 88 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 152 (619)
...|+.+...+...|+.++|.+.+++..+. + ..| ...+|+.+..+|...|++++|...+++..+ +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344666666666666666666666655432 0 112 234566666667677777666665544321 0
Q ss_pred ----CeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHH
Q 007077 153 ----DVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGN 228 (619)
Q Consensus 153 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (619)
...++..+..++... ..+++++|...|+.+.+..|.++..+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~----------------------------------~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKC----------------------------------GGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHH----------------------------------CTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH----------------------------------ccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 111222222222221 123344444444444444444444444
Q ss_pred HHHHHH---HhcCChhhHHHHhccCCC---CCchhHHHHHHHHH----hcCCHHHHHHHHccC---CCCChhhHHHHHHH
Q 007077 229 ALLDMY---CKCGCLSEARELFDEMPN---KNVICWTSMVSGYV----NCGQLEKARDLFDRS---PVRDIVLWTAMING 295 (619)
Q Consensus 229 ~l~~~~---~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~----~~g~~~~A~~~~~~~---~~~~~~~~~~li~~ 295 (619)
.+..++ ...++.++|++.|++..+ .+...+..+...+. ..|++++|...+++. .+.+..++..+...
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 433332 233444555555544332 22233333333332 234555666666543 34466778888888
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
|...|++++|+..|++..+. .|+ ...+..+..++...+....+ .. ...........+..+.
T Consensus 257 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHH
Confidence 88999999999999888774 343 34555554444321111100 00 0001111112233567
Q ss_pred HHHHHHhcC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHh
Q 007077 375 ALEIFYELR---EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI--TFIGVLS-ACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 375 A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~ 448 (619)
|...|++.. ..+..++..+...|...|++++|++.|++.++....|... .+..+.. .....|+.++|+..|++.
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777654 3467789999999999999999999999999874333321 2233332 335789999999999988
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+ +.|+........ ..+.+++++.. ..++.+..+|..+...+...|++++|++.|++++++.|.+|.
T Consensus 399 l~---i~~~~~~~~~~~---------~~l~~~~~~~l-~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 399 VK---INQKSREKEKMK---------DKLQKIAKMRL-SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HH---SCCCCHHHHHHH---------HHHHHHHHHHH-HHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred Hh---cCcccHHHHHHH---------HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 75 356643332222 23334444333 113334446999999999999999999999999999999888
Q ss_pred hHHHHH
Q 007077 529 FHTLLA 534 (619)
Q Consensus 529 ~~~~l~ 534 (619)
+...++
T Consensus 466 a~~~~G 471 (472)
T 4g1t_A 466 ASSWNG 471 (472)
T ss_dssp ------
T ss_pred HhhcCC
Confidence 665554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=146.78 Aligned_cols=266 Identities=11% Similarity=-0.003 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLA 398 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 398 (619)
..+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+..++..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345667778899999999999999998875 56788889999999999999999999998763 36788999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHH-HHHHH--------------HH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 007077 399 MNGKINKALELFSQMISGGAKPDDI-TFIGV--------------LS-ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYG 462 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 462 (619)
..|++++|...++++.+. .|+.. .+..+ .. .+...|++++|...++.+.+. .+.+...+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 176 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHA 176 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 999999999999999987 44433 22222 22 377889999999999999875 244678899
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
.++..|.+.|++++|.+.++++... .+.+..+|..+...+...|++++|...++++.+..|+++.++..++.+|...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999987732 334456699999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 543 WEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 543 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
+++|.+.++++.+....... . .+.........++..+..++..+.+..+..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~-~-------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTT-P-------------TGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-------------------CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccc-c-------------cccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999998764322110 0 000012225667777888877776655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-15 Score=138.66 Aligned_cols=215 Identities=8% Similarity=-0.070 Sum_probs=153.2
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---C-------hhhHHHHHHHH
Q 007077 328 LTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---D-------AASWTSIICGL 397 (619)
Q Consensus 328 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~l~~~~ 397 (619)
...+...|++++|...+..+.+.. .+..++..+..+|...|++++|...|+++.+. + ...|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333333444444444444443333 33444455555555555555555555544321 1 45677777888
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 398 AMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
...|++++|+..|++.... .|+. ..+...|++++|...++.+... .+.+...+..+...+...|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888888888775 4553 3355567888899888888753 233466788888889999999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
.+.++++... .+.+..+|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 159 ~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999887632 33345668899999999999999999999999999999999999999999999999999999998763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=137.22 Aligned_cols=195 Identities=15% Similarity=0.052 Sum_probs=156.8
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007077 353 TVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGV 428 (619)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 428 (619)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888899999999999999998764 36778888999999999999999999999887 565 5678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 429 LSACSHG-----------GLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 429 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
...+... |++++|...+++..+. .| +...+..+..+|...|++++|++.|++..... .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 8888888 9999999999999875 34 47788999999999999999999999987433 556679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
..+..++...|++++|+..++++.++.|+++.++..++.++...|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999888653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-17 Score=170.09 Aligned_cols=147 Identities=15% Similarity=0.212 Sum_probs=126.7
Q ss_pred hhHHHHHHHHhccCCCCChhHHHHhhccCC-------CCCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHH
Q 007077 20 PETLNKLMVFCTHPSHGNLLYAEKIFGSIQ-------SPCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYP 92 (619)
Q Consensus 20 ~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 92 (619)
..+||+||.+|+ +.|++++|.++|++|. .||+++||+||++|++.|++++|.++|++|.+.|+.||..||+
T Consensus 127 ~~TynaLIdglc--K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCL--LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHH--HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 468999999999 9999999999997653 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-hHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC-----CCeecHHHHHHHHHc
Q 007077 93 FVFKAVGWLGEV-KKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD-----KDVVSWNVSISGHVK 166 (619)
Q Consensus 93 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 166 (619)
++|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++...+++..+.. +.+.+...|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 78999999999999999999999999888887666666666555542 123345556666666
Q ss_pred CC
Q 007077 167 CM 168 (619)
Q Consensus 167 ~g 168 (619)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-15 Score=138.58 Aligned_cols=237 Identities=14% Similarity=0.011 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CC----hhHHH
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRIT--VD----AVVAT 360 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 360 (619)
..|..+...+...|++++|+..|+++.+.. ++...+..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 466777888888888888888888887776 66777888888888888888888888887664311 11 57788
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHH
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVD 439 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 439 (619)
.+...|...|++++|...|+++.+.+.. ...+...|++++|...++++... .|+ ...+..+...+...|+++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 8888999999999999999887643222 34566778899999999999886 555 457788888899999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+|...++.+.... +.+...+..+..+|.+.|++++|.+.++++... .+.....|..+...+...|++++|...++++
T Consensus 157 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998752 445788999999999999999999999988732 3445566999999999999999999999999
Q ss_pred hccC------CCCcchHHHHHH
Q 007077 520 EKIE------SKDSSFHTLLAN 535 (619)
Q Consensus 520 ~~~~------p~~~~~~~~l~~ 535 (619)
.++. |++..++..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 9988 877776665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=164.84 Aligned_cols=127 Identities=12% Similarity=0.158 Sum_probs=107.2
Q ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 007077 353 TVDAVVATALIEMYAKCGLIEKALEIFYELR-------EKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITF 425 (619)
Q Consensus 353 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 425 (619)
..-..+|++||++|++.|++++|.++|++|. .+|+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678899999999999999999987653 469999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 426 IGVLSACSHGGL-VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 426 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999887 47889999999888 9999999999998877775544444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=135.67 Aligned_cols=244 Identities=11% Similarity=-0.044 Sum_probs=192.2
Q ss_pred HcCChhHHHHHHHHHHHcCC--CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHH
Q 007077 298 QFNRFDEAVALFREMQIIRL--KP-DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~g~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
..|++++|+..|+++.+... .| +...+..+...+...|++++|...+..+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 35778888999888877532 12 34577778888888999999999998888765 5577888999999999999999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 375 ALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 375 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
|...|+++.+ .+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998763 36788999999999999999999999999986 666555555555667779999999999888764
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 452 YQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE---IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 452 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.+++...+ .++..+...++.++|.+.+++....... .....|..+...+...|++++|...++++.+..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 24444444 4777888889999999999988743221 12466889999999999999999999999999998855
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 007077 529 FHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999988776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=140.03 Aligned_cols=382 Identities=8% Similarity=-0.016 Sum_probs=198.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCCh---hHHHHHHccCCCCCeecHHHHHHHHHcCC--
Q 007077 94 VFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKI---CNVKKLFDEMPDKDVVSWNVSISGHVKCM-- 168 (619)
Q Consensus 94 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 168 (619)
+...+.+.|++++|.++++...+.|. ...+..|...|...|+. ++|...|++..+.++..+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 33444556666667776666666542 22333444445555655 67777776666555556666665444444
Q ss_pred ---ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHh-ccCChhHHHHHHHHHHhcCChhhHH
Q 007077 169 ---RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQE-LEFTPIMGNALLDMYCKCGCLSEAR 244 (619)
Q Consensus 169 ---~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 244 (619)
++++|+..|++..+ .|.. ..+..+...+...+..+.+...++.+.+. ...++.....|...|...+.++++.
T Consensus 86 ~~~~~~~A~~~~~~Aa~-~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA-NGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CHHHHHHHHHHHHHHHH-TTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCcCHHHHHHHHHHHHH-CCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 56777777777666 3322 13334444443333322222233333222 2233444555555555555444433
Q ss_pred HHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCH
Q 007077 245 ELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN---RFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~ 321 (619)
. .+..++......++..+..+...|...| +.++|+..|++..+.| .++.
T Consensus 162 ~---------------------------~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a 213 (452)
T 3e4b_A 162 D---------------------------DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTA 213 (452)
T ss_dssp H---------------------------HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCH
T ss_pred H---------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHH
Confidence 2 2233344444444456666666666666 6667777776666655 2222
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHH-H--H
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICG-L--A 398 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~ 398 (619)
..+..+...|... ....+++++|...|++....++..+..+... | .
T Consensus 214 ~~~~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~ 262 (452)
T 3e4b_A 214 QRVDSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFP 262 (452)
T ss_dssp HHHHHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Confidence 2222333333222 0001455555555555542245555555555 3 3
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---
Q 007077 399 MNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG-----LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR--- 470 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 470 (619)
..+++++|+..|++..+.| +...+..+...|. .| ++++|..+|++.. +-+...+..|..+|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYL 333 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCC
Confidence 5677788888888877765 4455555555555 44 7888888887664 3455667777777765
Q ss_pred -cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHH--HhCCCh
Q 007077 471 -AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIY--ASANRW 543 (619)
Q Consensus 471 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~ 543 (619)
..++++|...|++....+++.. ...|...|.. ..++++|...++++.+..+.... ..+..+. ...++.
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g~~~A---~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~--~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNGQNSA---DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEAN--DLATQLEAPLTPAQR 408 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTTCTTH---HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHH--HHHHHHHTTCCHHHH
T ss_pred CCcCHHHHHHHHHHHHhhChHHH---HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHHhCCHHHH
Confidence 3488888888888776655444 6666666653 45888899998888877654433 3333332 223456
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
.+|.++.++...
T Consensus 409 ~~a~~~~~~~~~ 420 (452)
T 3e4b_A 409 AEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=134.44 Aligned_cols=248 Identities=9% Similarity=-0.016 Sum_probs=147.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD--AVVATALIEMY 366 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 366 (619)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+....++ ...+..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555666666666666655432 11222455555555566666666666665555221111 12355666666
Q ss_pred HhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007077 367 AKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 442 (619)
...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777666666542 34566667777777777777777777776655 443 344555552333445777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHhhCCCC----CCc---ccHHHHHHHHHHHHHcCCHHHH
Q 007077 443 RFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL---LDEAEELIRKIPNE----NNE---IIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a 512 (619)
..|+.+.+.. +.+...+..+..++...|+ +++|...++++... +++ ....+|..+...+...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777776541 2235566666667766666 55566665554411 111 1234678888899999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 513 EKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
...++++.+++|+++.++..+..+....+
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999998877776655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=142.51 Aligned_cols=344 Identities=11% Similarity=-0.014 Sum_probs=229.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCh---hhHHHHhccCCCCCchhHHHHHHHHHhcC---
Q 007077 196 TLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL---SEARELFDEMPNKNVICWTSMVSGYVNCG--- 269 (619)
Q Consensus 196 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 269 (619)
+...+.+.|+++.|..+++.+.+. .++..+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 445567789999999999998776 3444556677777888888 89999999988777777888888666655
Q ss_pred --CHHHHHHHHccCCCC-ChhhHHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 007077 270 --QLEKARDLFDRSPVR-DIVLWTAMINGYVQFNRFD---EAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWI 343 (619)
Q Consensus 270 --~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 343 (619)
++++|...|++...+ +...+..+...|...+..+ ++.+.+......|. ......+...+...+.++.+...
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHH
Confidence 788999999876533 5568888888888776544 45555555555553 33445566666666644443333
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhCC---CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhC----CChHHHHHHHHHH
Q 007077 344 HGYINENRITVDAVVATALIEMYAKCG---LIEKALEIFYELREK---DAASWTSIICGLAMN----GKINKALELFSQM 413 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----g~~~~A~~~~~~m 413 (619)
...+.+.-...++..+..|..+|...| +.++|++.|++..+. +...+..+...|... +++++|+..|++.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 222222222334458888999999999 999999999987643 333446777777554 7999999999998
Q ss_pred HHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCC
Q 007077 414 ISGGAKPDDITFIGVLSA-C--SHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG-----LLDEAEELIRKIP 485 (619)
Q Consensus 414 ~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 485 (619)
. .| +...+..+... + ...++.++|..+|++..+. + +...+..|..+|. .| ++++|.+.|++..
T Consensus 244 a-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 244 A-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp G-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred c-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 7 32 33455555555 3 5689999999999998864 3 6778888888887 55 9999999999998
Q ss_pred CCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCC
Q 007077 486 NENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 557 (619)
.+++. .+..|...|.. ..++++|...++++.+ +.++.+...|+.+|.. ..+.++|..++++..+.|
T Consensus 315 -~g~~~---A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 -GREVA---ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp -TTCHH---HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred -CCCHH---HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44433 37777777665 3399999999999876 4567778899999886 458999999999999887
Q ss_pred Cc
Q 007077 558 VR 559 (619)
Q Consensus 558 ~~ 559 (619)
..
T Consensus 389 ~~ 390 (452)
T 3e4b_A 389 TP 390 (452)
T ss_dssp CH
T ss_pred CH
Confidence 64
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-13 Score=124.67 Aligned_cols=225 Identities=11% Similarity=-0.051 Sum_probs=132.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----LGALEQGKWIHGYINENRITVDAVVAT 360 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (619)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4555666666666667777777777666552 123344444444444 555555555555444433
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAM----NGKINKALELFSQMISGGAKPDDITFIGVLSACSH-- 434 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 434 (619)
+..++..+...|.. .+++++|+..|++..+.+ +..++..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444555555555 556666666666655543 34455555555555
Q ss_pred --cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH---
Q 007077 435 --GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI--- 505 (619)
Q Consensus 435 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 505 (619)
.+++++|...|++..+. + +...+..+...|.. .+++++|++.+++....+. ...+..+...+..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 66666666666666543 1 34455556666665 6667777776666553322 2336666666666
Q ss_pred -cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 007077 506 -YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 506 -~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 558 (619)
.+++++|...++++.+..| +..+..++.+|.. .+++++|.+.+++..+.+.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 7777777777777766655 4556677777777 7777777777777766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=134.33 Aligned_cols=245 Identities=11% Similarity=0.059 Sum_probs=202.0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCc-HHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKP-DKFILVALLTGCAQLGA-LEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
+...|+.+...+...|++++|+..|++..+. .| +...|..+..++...|+ +++|...++.+++.. +.+..+|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 3457888888889999999999999998874 44 45577888888888896 999999999998875 5678889999
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc-cCc
Q 007077 363 IEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSH-GGL 437 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~-~g~ 437 (619)
..++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998763 47788999999999999999999999999987 565 5688888888888 666
Q ss_pred HHHH-----HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC--
Q 007077 438 VDEG-----RRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAG--LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG-- 507 (619)
Q Consensus 438 ~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 507 (619)
.++| +..+++.+.. .|+ ...|..+..+|.+.| ++++|++.+.++ ..++.+...+..++..+.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcc
Confidence 5777 5788888764 344 678888999999888 689999999888 445666667888998888874
Q ss_pred -------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHHh
Q 007077 508 -------NVDMGEKLAALL-EKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 508 -------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+++|+++++++ .+++|.....|..++..+..
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 89999999988888876554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-13 Score=124.71 Aligned_cols=232 Identities=10% Similarity=-0.076 Sum_probs=160.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007077 254 NVICWTSMVSGYVNCGQLEKARDLFDRSPVR-DIVLWTAMINGYVQ----FNRFDEAVALFREMQIIRLKPDKFILVALL 328 (619)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 328 (619)
+..++..+...+...|++++|...|++...+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5567888899999999999999999876544 66788899999999 999999999999998875 566676777
Q ss_pred HHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChH
Q 007077 329 TGCAQ----LGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKIN 404 (619)
Q Consensus 329 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 404 (619)
..+.. .+++++|...++...+.+ +...+..+...|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 77777 777777777777766643 3444444444444400 0055556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 007077 405 KALELFSQMISGGAKPDDITFIGVLSACSH----GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDE 476 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 476 (619)
+|+..|++..+.+ +..++..+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 6666666655543 33444555555555 66777777777766653 234566667777777 777777
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcc
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
|++.+++....+. ...+..+...+.. .+++++|...++++.+..|+++.
T Consensus 205 A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 205 ALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777664333 3347777777777 78888888888888887776544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=121.81 Aligned_cols=195 Identities=16% Similarity=0.038 Sum_probs=113.5
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007077 284 RDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALI 363 (619)
Q Consensus 284 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 363 (619)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 345566666777777777777777777766532 2234456666666666667777766666666654 44555666666
Q ss_pred HHHHhC-----------CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007077 364 EMYAKC-----------GLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVL 429 (619)
Q Consensus 364 ~~~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 429 (619)
.++... |++++|+..|++..+ .+...|..+...|...|++++|+..|++.++.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 666666 666666666666542 245566666666667777777777777666654 4555666666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 430 SACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 430 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
.++...|++++|...|+...+. -+.+...+..+..++.+.|++++|++.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666667777777777666653 1233556666666666667777666666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-13 Score=122.50 Aligned_cols=169 Identities=9% Similarity=0.027 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACS 433 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 433 (619)
.+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|+++...+..|+ ...+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 344444444444444444444444321 2344555555666666666666666666655323443 335555666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
..|++++|...++.+.+.. +.+...+..++..|...|++++|.+.++++... .+.....+..+...+...|++++|.
T Consensus 153 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHH
Confidence 6666777766666665531 223555666666666666666666666665422 2333444666666666677777777
Q ss_pred HHHHHHhccCCCCcch
Q 007077 514 KLAALLEKIESKDSSF 529 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~ 529 (619)
+.++++.+..|+++..
T Consensus 230 ~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 230 SYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHCCCCHHH
Confidence 7777776666666653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-13 Score=122.10 Aligned_cols=197 Identities=12% Similarity=0.001 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSAC 432 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 432 (619)
...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34445555555566666666666555432 244556666666666666666666666666541 22344556666666
Q ss_pred hcc-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 433 SHG-GLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 433 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
... |++++|...++.+.+. +..|+ ...+..++.++...|++++|.+.++++... .+.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHH
Confidence 666 6666666666666541 22233 455666666666677777777666665521 2223444666666777777777
Q ss_pred HHHHHHHHHhccCC-CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 511 MGEKLAALLEKIES-KDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 511 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|...++++.+..| +++..+..++.++...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 6666666666667777777777777766654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=138.64 Aligned_cols=266 Identities=11% Similarity=-0.002 Sum_probs=185.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHc----C-CCCChhHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPDK----FILVALLTGCAQLGALEQGKWIHGYINEN----R-ITVDAVVA 359 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 359 (619)
+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...++...+. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344555666777777777777776664211 21 34556666666777777777776665442 1 12234566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhCCC-----------------hHHHHHHHHHH
Q 007077 360 TALIEMYAKCGLIEKALEIFYELREK---------DAASWTSIICGLAMNGK-----------------INKALELFSQM 413 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m 413 (619)
..+...|...|++++|...|++..+. ...++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777788888888888777765431 24467777888888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007077 414 ISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKI 484 (619)
Q Consensus 414 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 484 (619)
.+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 11222 236777778888899999999999887654211122 236788888999999999999998876
Q ss_pred CC-----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 485 PN-----ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 485 ~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
.. ........++..+...+...|++++|...++++.++.+.. ..++..++.+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 51 1111224567888889999999999999999998765443 346888999999999999999999988
Q ss_pred Hh
Q 007077 554 KE 555 (619)
Q Consensus 554 ~~ 555 (619)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=125.31 Aligned_cols=199 Identities=10% Similarity=-0.036 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSAC 432 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 432 (619)
...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667788888899999999999988753 467789999999999999999999999998873 23567888888999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH
Q 007077 433 SHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
...|++++|..+++.+... +..| +...+..++..|...|++++|.+.++++... .+.....+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998762 3445 4678888999999999999999999987632 33345668999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 512 GEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
|...++++.+..|+++..+..++.++...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998743
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-14 Score=128.25 Aligned_cols=143 Identities=10% Similarity=0.011 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+... .+.+...+..++..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 334444444444444444444444444431 112334444444444445555555554444432 11223344444444
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
+.+.|++++|.+.++++... .+.+..+|..+...+...|++++|...++++.+..|+++.++..++
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 44444444444444443311 1122233444555555555555555555555555555544444333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=127.64 Aligned_cols=200 Identities=14% Similarity=0.089 Sum_probs=155.7
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLS 430 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 430 (619)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667778888889999999999888754 367788889999999999999999999998872 234678888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++... .+.+...+..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998752 456788999999999999999999999987632 3334556899999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+|+..++++.+..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999998743
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=136.56 Aligned_cols=268 Identities=12% Similarity=0.027 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCC-CChh
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD----KFILVALLTGCAQLGALEQGKWIHGYINEN----RIT-VDAV 357 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 357 (619)
..+......+...|++++|+..|+++.+.+.. + ...+..+...+...|+++.|...+..+.+. +.+ ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455566666677777777777766654211 2 234555666666677777776666655432 111 1234
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhCCC--------------------hHHHHH
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMNGK--------------------INKALE 408 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 408 (619)
++..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5666777777777777777777765531 2 3367777777778888 888888
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHH
Q 007077 409 LFSQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 409 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
.+++.... +..|. ..++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77775432 21222 236677777788888888888888887654222222 2367778888888888888888
Q ss_pred HHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHH
Q 007077 480 LIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 480 ~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
.+++... .++ .....++..+...+...|++++|...++++.++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876541 111 1124457777888888888888888888887665443 4467788888888888888888
Q ss_pred HHHHHHh
Q 007077 549 VRQKMKE 555 (619)
Q Consensus 549 ~~~~m~~ 555 (619)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=118.80 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELR---EKDAASWTSIICGLAMN-GKINKALELFSQMISGGAKPD-DITFIGVLS 430 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 430 (619)
...+..+...|...|++++|...|+++. ..+..++..+...+... |++++|...++++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 4455555556666666666666666543 23556677777788888 888888888888887433455 456777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHHHHcCCH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNE-IIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 509 (619)
.+...|++++|...++.+.+. .+.+...+..++.++.+.|++++|.+.++++... .+ .+...+..+...+...|+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcH
Confidence 888889999999988888764 2334778888888999999999999999887632 22 3444577777778899999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
+.+..+++.+.+..|+++.....+
T Consensus 199 ~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 199 QAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHh
Confidence 999999999999999988755443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-13 Score=125.72 Aligned_cols=229 Identities=7% Similarity=-0.054 Sum_probs=186.6
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CChh----hHHHHHHH
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE--KDAA----SWTSIICG 396 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 396 (619)
.+......+...|++++|...+..+.+.. +.+...+..+..+|...|++++|...|+++.+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34556678889999999999999999875 45666888899999999999999999998765 2333 48899999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLD 475 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 475 (619)
+...|++++|+..|++..+. .|+ ..++..+...+...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 444 568889999999999999999999998753 2334677777773444456999
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHHhCCChH
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIE---SKD-----SSFHTLLANIYASANRWE 544 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 544 (619)
+|.+.|+++... .+.+...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988732 33345568888888888898 888999999998765 442 256888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007077 545 DVTNVRQKMKEMG 557 (619)
Q Consensus 545 ~A~~~~~~m~~~~ 557 (619)
+|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998743
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-13 Score=131.90 Aligned_cols=246 Identities=10% Similarity=0.017 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 007077 322 FILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGL-IEKALEIFYELRE---KDAASWTSIICGL 397 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 397 (619)
..+..+...+...|++++|...++.+++.. +.+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356677778889999999999999999876 6678899999999999997 9999999999874 4778999999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHH
Q 007077 398 AMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR-AGLLD 475 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~ 475 (619)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++++.. +-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999987 565 5689999999999999999999999999752 3457889999999999 66657
Q ss_pred HH-----HHHHhhCCCCCCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC-------
Q 007077 476 EA-----EELIRKIPNENNEIIVPLYGALLSACRIYG--NVDMGEKLAALLEKIESKDSSFHTLLANIYASAN------- 541 (619)
Q Consensus 476 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 541 (619)
+| ++.+++... -++.+...|..+...+...| ++++|+..++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~-l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK-LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 477877762 24445556999999898888 689999999998 999999999999999999975
Q ss_pred --ChHHHHHHHHHH-HhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHH
Q 007077 542 --RWEDVTNVRQKM-KEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTL 600 (619)
Q Consensus 542 --~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 600 (619)
.+++|.++++++ .+ .+|...+.|..+.......
T Consensus 331 ~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHHH
Confidence 358999999998 54 2566666677666655544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=132.68 Aligned_cols=267 Identities=13% Similarity=0.038 Sum_probs=188.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHHc----CCC-CChhHH
Q 007077 289 WTAMINGYVQFNRFDEAVALFREMQIIRLKPD----KFILVALLTGCAQLGALEQGKWIHGYINEN----RIT-VDAVVA 359 (619)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 359 (619)
+......+...|++++|+..|+++.+.... + ...+..+...+...|+++.|...+....+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777777777777777664311 2 245566666777777777777777665432 111 124566
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCC--------------------hHHHHHHH
Q 007077 360 TALIEMYAKCGLIEKALEIFYELRE-----KD----AASWTSIICGLAMNGK--------------------INKALELF 410 (619)
Q Consensus 360 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 410 (619)
..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888888877543 12 3367778888888888 88888888
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 007077 411 SQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELI 481 (619)
Q Consensus 411 ~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 481 (619)
++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 11222 236777778888999999999999887654211122 337788889999999999999999
Q ss_pred hhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHHHH
Q 007077 482 RKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTNVR 550 (619)
Q Consensus 482 ~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 550 (619)
++... .++ .....++..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 87651 111 1224567888889999999999999999998765543 346788999999999999999999
Q ss_pred HHHHhC
Q 007077 551 QKMKEM 556 (619)
Q Consensus 551 ~~m~~~ 556 (619)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-11 Score=122.35 Aligned_cols=442 Identities=10% Similarity=0.031 Sum_probs=286.8
Q ss_pred CChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCC---hhHHH
Q 007077 67 GSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGK---ICNVK 143 (619)
Q Consensus 67 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 143 (619)
....+.+..|++....+ +-|..+|..++..+.+.+.++.+..+++++... ++.....|...+..-.+.|+ ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34455666666666654 457888999999988888999999999999875 44566778888888888888 89999
Q ss_pred HHHccCCC-----CCeecHHHHHHHHHcCCCh--------hHHHHHHHHhHhcCCC-CCCh-hhHHHHHHHhhc------
Q 007077 144 KLFDEMPD-----KDVVSWNVSISGHVKCMRF--------EDAVDVFRRMRQGCNL-MPDE-GTVVSTLSACTA------ 202 (619)
Q Consensus 144 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~~-~~~~~ll~~~~~------ 202 (619)
++|++... |++..|...+.-..+.++. +...++|+......|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99987653 5666777777666555543 2344677766554666 5543 455555544322
Q ss_pred ---CCChHHHHHHHHHHHHhccCC--hhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 007077 203 ---LKNLELGKEIHRYINQELEFT--PIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDL 277 (619)
Q Consensus 203 ---~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 277 (619)
.+..+.+..++..++. +|.. ..+|......-...+ ...+.+++.+. ..+++.|...
T Consensus 204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----------------HHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----------------hHHHHHHHHH
Confidence 2234566677766664 2222 223322222111111 11122221110 0111222222
Q ss_pred Hc-------cCC----C----------C--C------hhhHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCCH
Q 007077 278 FD-------RSP----V----------R--D------IVLWTAMINGYVQFN-------RFDEAVALFREMQIIRLKPDK 321 (619)
Q Consensus 278 ~~-------~~~----~----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~ 321 (619)
+. .+. . | + ...|...+.---..+ ..+.+..+|+++... .+-+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 21 110 0 0 1 134544444322222 123456778887764 23355
Q ss_pred HHHHHHHHHHHccCcHHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-------------C--
Q 007077 322 FILVALLTGCAQLGALEQGK-WIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-------------K-- 385 (619)
Q Consensus 322 ~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~-- 385 (619)
..|...+.-+.+.|+.+.|. .+++..... +|.+...+-..+....+.|+++.|..+|+++.. |
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 56667777777888888886 999998874 466777788889999999999999999998764 2
Q ss_pred ----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcC
Q 007077 386 ----------DAASWTSIICGLAMNGKINKALELFSQMISG-GAKPDDITFIGVLSACSH-GGLVDEGRRFFNTMTEVYQ 453 (619)
Q Consensus 386 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~ 453 (619)
....|...+....+.|..+.|..+|.+..+. + .+....|...+..-.+ .++.+.|..+|+...+.+
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~- 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF- 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-
Confidence 1236888888888899999999999999886 2 1223334333332233 355999999999999864
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 454 IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENN--EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
+.+...|...++.....|+.+.|..+|++...... ......|...+..-...|+.+.+.++.+++.+..|+++. ..
T Consensus 501 -p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~-~~ 578 (679)
T 4e6h_A 501 -ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK-LE 578 (679)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH-HH
T ss_pred -CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH-HH
Confidence 44566778889988899999999999999884422 134567999999989999999999999999999999876 44
Q ss_pred HHHH
Q 007077 532 LLAN 535 (619)
Q Consensus 532 ~l~~ 535 (619)
.+++
T Consensus 579 ~f~~ 582 (679)
T 4e6h_A 579 EFTN 582 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-13 Score=116.04 Aligned_cols=167 Identities=12% Similarity=0.054 Sum_probs=137.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCL 464 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 464 (619)
++..|..+...|...|++++|++.|++.++. .|+ ..++..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888888888888888888888888876 555 457788888888889999998888888764 23346677777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWE 544 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 544 (619)
...+...+++++|.+.+.+... -.+.+...+..+...+...|++++|+..++++.+++|.++.++..++.+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIA-LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888888999999998887762 234445568888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007077 545 DVTNVRQKMKEMG 557 (619)
Q Consensus 545 ~A~~~~~~m~~~~ 557 (619)
+|.+.+++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-13 Score=126.14 Aligned_cols=221 Identities=11% Similarity=-0.112 Sum_probs=163.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIE 364 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 364 (619)
+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 45677888888888888888888888887753 3356678888888888888988888888888764 456778888889
Q ss_pred HHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007077 365 MYAKCGLIEKALEIFYELRE--KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGR 442 (619)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 442 (619)
+|...|++++|...|+++.+ |+.......+..+...|++++|...+++.... .|+......++..+...++.++|.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNIVEFYLGNISEQTLM 197 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHHHHHHTTSSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999988763 33333444445556779999999999887775 333333334667777888888999
Q ss_pred HHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Q 007077 443 RFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLA 516 (619)
Q Consensus 443 ~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (619)
..++..... .|+ ...+..+..+|.+.|++++|.+.|+++... ++.+ +.....++...|++++|++.+
T Consensus 198 ~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN-NVHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTT---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-Cchh---HHHHHHHHHHHHHHHhhHHHH
Confidence 888876532 232 577888999999999999999999988743 3334 444566777888888888776
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-13 Score=136.82 Aligned_cols=210 Identities=8% Similarity=-0.054 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCH-HHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLI-EKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQ 412 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 412 (619)
++.+...+....... +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 44667777788888888888 888888887653 3577899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--------CCHH
Q 007077 413 MISGGAKPDDITFIGVLSACSHG---------GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA--------GLLD 475 (619)
Q Consensus 413 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 475 (619)
.++. .|+..++..+...+... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9987 67778888888999999 99999999999998752 34478899999999998 9999
Q ss_pred HHHHHHhhCCCCCCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 476 EAEELIRKIPNENNE---IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
+|++.|++.... ++ .+...|..+..++...|++++|+..++++.+++|+++.++..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~-~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKV-DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHH-CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh-CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988742 33 46667999999999999999999999999999999999999999999999999999975544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-12 Score=127.36 Aligned_cols=296 Identities=13% Similarity=-0.024 Sum_probs=168.3
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCC----hhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHH
Q 007077 198 SACTALKNLELGKEIHRYINQELEFT----PIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEK 273 (619)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 273 (619)
..+...|+++.|...++.+.+..+.+ ..++..+...|...|++++|...|++.
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------- 73 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD----------------------- 73 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------------------
Confidence 33444445555555544444443333 234556666777777777777665542
Q ss_pred HHHHHccCCCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCc----------
Q 007077 274 ARDLFDRSPVR--DIVLWTAMINGYVQFNRFDEAVALFREMQIIRL-KPD----KFILVALLTGCAQLGA---------- 336 (619)
Q Consensus 274 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~---------- 336 (619)
..+......+ ...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 74 -l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 74 -LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred -HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 1222222111 234567777778888888888888877654210 011 2244455555555555
Q ss_pred ----------HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhCCChH
Q 007077 337 ----------LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK--DAASWTSIICGLAMNGKIN 404 (619)
Q Consensus 337 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 404 (619)
++.|...+....+. +.....+ ...++..+...|...|+++
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHH
Confidence 44444444433221 1111000 1234555556666666666
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHH
Q 007077 405 KALELFSQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLD 475 (619)
Q Consensus 405 ~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 475 (619)
+|+..+++..+... .++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|+++
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 66666666543210 111 125666666777777777777777766543211112 456677778888888888
Q ss_pred HHHHHHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHHhCCChH
Q 007077 476 EAEELIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIES------KDSSFHTLLANIYASANRWE 544 (619)
Q Consensus 476 ~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 544 (619)
+|.+.+++... .++ .....++..+...+...|++++|...++++.++.+ ....++..++.++...|+..
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 88887776541 111 22244577888888899999999999988876633 33556788899998888764
Q ss_pred H
Q 007077 545 D 545 (619)
Q Consensus 545 ~ 545 (619)
.
T Consensus 365 ~ 365 (406)
T 3sf4_A 365 S 365 (406)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-12 Score=125.95 Aligned_cols=273 Identities=11% Similarity=-0.023 Sum_probs=154.4
Q ss_pred hcCCChHHHHHHHHHHHHhccCCh----hHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 007077 201 TALKNLELGKEIHRYINQELEFTP----IMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARD 276 (619)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 276 (619)
...|+++.|...++.+.+..+.++ .++..+...|...|++++|...|++. ..
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------------l~ 114 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD------------------------LT 114 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------------HH
T ss_pred HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HH
Confidence 334444444444444444322222 24556666777777777777765543 22
Q ss_pred HHccCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCc-------------
Q 007077 277 LFDRSPV--RDIVLWTAMINGYVQFNRFDEAVALFREMQII----RLKP-DKFILVALLTGCAQLGA------------- 336 (619)
Q Consensus 277 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~------------- 336 (619)
+.+.... ....++..+...|...|++++|+..+++..+. +-.| ...++..+...+...|+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence 2222211 13356777778888888888888888876542 1111 12245555555555666
Q ss_pred ----HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 337 ----LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK--DAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 337 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
++.|...+....+. +.....+ ...++..+...|...|++++|+..+
T Consensus 195 a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 195 VKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44444444433221 1111100 1234555566666666666666666
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 007077 411 SQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELI 481 (619)
Q Consensus 411 ~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 481 (619)
++..+... .++ ..++..+...+...|++++|...++.......-..+ ...+..+..+|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66544210 011 125666667777777777777777766543211111 456777788888888888888888
Q ss_pred hhCCCC----C-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 482 RKIPNE----N-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 482 ~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
++.... + ......++..+...+...|++++|...++++.++.+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 766511 1 1222345777888889999999999999999877653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=127.52 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=135.9
Q ss_pred HHHHccCcHHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----C-----ChhhHHHH
Q 007077 329 TGCAQLGALEQGKWIHGYINEN----RITV-DAVVATALIEMYAKCGLIEKALEIFYELRE-----K-----DAASWTSI 393 (619)
Q Consensus 329 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l 393 (619)
..+...|++++|...+....+. +-++ ...++..+...|...|++++|...+++..+ + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555555555555555432 1111 224555566666666666666666655432 1 12356666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC-CCChhHHHHH
Q 007077 394 ICGLAMNGKINKALELFSQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY---QI-QPKLEHYGCL 464 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~~l 464 (619)
...|...|++++|+..|++..+. +-.+. ..++..+...+...|++++|...+++..... +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 67777777777777777766542 11111 1356667777777777777777777765421 11 1224566777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPN----ENNEIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..+|.+.|++++|.+.+++... .+++.....+..+...+...|+ +++|...+++. ...|....++..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 7777777888887777776541 1233333335566666777777 66677666665 33344455677888888
Q ss_pred HhCCChHHHHHHHHHHHh
Q 007077 538 ASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~ 555 (619)
...|++++|.+.+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=113.61 Aligned_cols=169 Identities=13% Similarity=0.008 Sum_probs=140.4
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLS 430 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 430 (619)
++.+|..+...|...|++++|++.|++..+ .++.+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 566788888888888899998888888653 36778888999999999999999999998876 444 456777778
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...++++.+...++..... .+.+...+..+..+|.+.|++++|++.|++... -++.+..+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS-IKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-hcchhhhHHHHHHHHHHHCCCHH
Confidence 888899999999999998764 244577888899999999999999999998773 24445667999999999999999
Q ss_pred HHHHHHHHHhccCCCCcc
Q 007077 511 MGEKLAALLEKIESKDSS 528 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~ 528 (619)
+|+..++++.+++|+++.
T Consensus 159 ~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCCccCHH
Confidence 999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-11 Score=113.14 Aligned_cols=222 Identities=9% Similarity=0.019 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCcH-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 303 DEAVALFREMQIIRLKPDKFILVALLTGCA-------QLGAL-------EQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 303 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
++|..+|+++.... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888776642 223445555555543 34664 7888888888773224566688888888888
Q ss_pred CCCHHHHHHHHHhcCCC---Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 007077 369 CGLIEKALEIFYELREK---DAA-SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSAC-SHGGLVDEGRR 443 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 443 (619)
.|++++|..+|+++.+. +.. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888887642 343 78888888888899999999999988763 22334444333332 23689999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNE--IIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.... +.+ .....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888753 345778888888888899999999999888753 122 245568888888888899999999999999
Q ss_pred ccCCCCcc
Q 007077 521 KIESKDSS 528 (619)
Q Consensus 521 ~~~p~~~~ 528 (619)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88888664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-10 Score=119.40 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=229.9
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhccCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCC---hhHHHHHHHHhHH
Q 007077 8 QAQIFQIGLQQNPETLNKLMVFCTHPSHGNLLYAEKIFGSIQ---SPCLLAYNLLIKAFAKKGS---FRKSLLLFSKLRE 81 (619)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 81 (619)
+...+..+ |.|...|..++..+. +.+.++.+..+|+++- +.+...|..-+..-.+.|+ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~--~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHV--SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 34444444 467888888888887 7788888888888663 4566677788888778888 8888888888877
Q ss_pred CC-CCCCcccHHHHHHHHhccCCh--------hHHHHHHHHHHH-hCC-CCC-hhhHHHHHHHhHh---------cCChh
Q 007077 82 RG-VSPDNFTYPFVFKAVGWLGEV--------KKGEKVHGYVVK-TGL-EFD-TYVCNSIMDMYGV---------LGKIC 140 (619)
Q Consensus 82 ~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~ 140 (619)
.. .+|+...|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 53 136777777766655444433 334467776664 355 454 3567766665432 34567
Q ss_pred HHHHHHccCCC-CCe---ecH---HHHHHHHH----------cCCChhHHHHHHHHhHhc-CCCC---CC----------
Q 007077 141 NVKKLFDEMPD-KDV---VSW---NVSISGHV----------KCMRFEDAVDVFRRMRQG-CNLM---PD---------- 189 (619)
Q Consensus 141 ~A~~~~~~~~~-~~~---~~~---~~li~~~~----------~~g~~~~A~~~~~~m~~~-~~~~---p~---------- 189 (619)
.+.++|+.... |.. ..| ..+...+- ...+++.|...+..+... .++. |.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 78888877664 211 122 22221110 011223344444433210 0110 10
Q ss_pred ---h-------hhHHHHHHHhhcCC-------ChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHH-HHhccCC
Q 007077 190 ---E-------GTVVSTLSACTALK-------NLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEAR-ELFDEMP 251 (619)
Q Consensus 190 ---~-------~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 251 (619)
. ..|...+.--...+ ..+....+++..+..+|.++.+|...+..+...|+.++|. .+|++..
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 0 11222222211111 0122345566666666666666666666666666666664 6555433
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC---------CCCC--
Q 007077 252 NKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIR---------LKPD-- 320 (619)
Q Consensus 252 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~-- 320 (619)
. ..+.+...|-..+...-+.|++++|.++|+.+.... -.|+
T Consensus 372 ~----------------------------~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 372 Q----------------------------CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp H----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred H----------------------------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 2 012233444455555555556666666655554321 0121
Q ss_pred ----------HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-CHHHHHHHHHhcCC---CC
Q 007077 321 ----------KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCG-LIEKALEIFYELRE---KD 386 (619)
Q Consensus 321 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~ 386 (619)
...|...+....+.|+.+.|+.+|..+.+.-......+|...+..-.+.+ +.+.|..+|+...+ .+
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 12455555555666667777777777665411112233333333333433 36777777776553 24
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPD--DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCL 464 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 464 (619)
...|...+......|+.+.|..+|++.+.....+. ...|...+.--...|+.+.+..+.+++.+.+ |+......+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~~f 580 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHHHH
Confidence 55566666666666777777777777766522111 2355555555566677777777777776652 443333444
Q ss_pred HHHHH
Q 007077 465 IDLLG 469 (619)
Q Consensus 465 ~~~~~ 469 (619)
++-|.
T Consensus 581 ~~ry~ 585 (679)
T 4e6h_A 581 TNKYK 585 (679)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 44443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=123.75 Aligned_cols=239 Identities=12% Similarity=0.035 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCC----h
Q 007077 287 VLWTAMINGYVQFNRFDEAVALFREMQII----RLKPD-KFILVALLTGCAQLGALEQGKWIHGYINENRI-TVD----A 356 (619)
Q Consensus 287 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~ 356 (619)
..+..+...|...|++++|+..+++.... +..|. ...+..+...+...|++++|...+....+... .++ .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 34555555566666666666666554321 11111 23445555556666666666666655443210 011 2
Q ss_pred hHHHHHHHHHHhCCC--------------------HHHHHHHHHhcCC-----C----ChhhHHHHHHHHHhCCChHHHH
Q 007077 357 VVATALIEMYAKCGL--------------------IEKALEIFYELRE-----K----DAASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~ 407 (619)
.++..+...|...|+ +++|...+++... . ....+..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 355566666667777 7777766665432 1 2346777788888888888888
Q ss_pred HHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHH
Q 007077 408 ELFSQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAE 478 (619)
Q Consensus 408 ~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 478 (619)
..+++..+... .++ ..++..+...+...|++++|...++.......-.++ ...+..+...|...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888764310 111 236777778888899999999998887653221222 456778888999999999999
Q ss_pred HHHhhCCCC----C-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 479 ELIRKIPNE----N-NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 479 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+.+++.... + ......++..+...+...|++++|...++++.++.+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 998876521 1 1222345778888999999999999999999887664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-13 Score=127.52 Aligned_cols=240 Identities=13% Similarity=0.107 Sum_probs=125.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc------C
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQII-------RLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN------R 351 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 351 (619)
+..++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888888899999999999999888663 11222335556666666667777776666665443 1
Q ss_pred C-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HH
Q 007077 352 I-TVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG------GAKPD-DI 423 (619)
Q Consensus 352 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~ 423 (619)
. +....++..+...|...|+ +++|...|+++.+. +..|+ ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~-------------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGK-------------------------------YKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTC-------------------------------HHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCc-------------------------------HHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 1122334444444444444 44444444444332 11122 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----------
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVY-----QIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNE---------- 487 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 487 (619)
++..+...+...|++++|..+++.+.... +..| ....+..+..+|...|++++|.+.++++...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44555555556666666666665554321 0011 1334555666666666666666666554310
Q ss_pred CCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 488 NNEII----VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 488 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.... ...+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01111 111222223334455556666667777777777777788888888888888888888887754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=125.12 Aligned_cols=239 Identities=13% Similarity=0.095 Sum_probs=147.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHccCCC--------C---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc------CC
Q 007077 255 VICWTSMVSGYVNCGQLEKARDLFDRSPV--------R---DIVLWTAMINGYVQFNRFDEAVALFREMQII------RL 317 (619)
Q Consensus 255 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 317 (619)
..++..+...+...|++++|...|++... . ...++..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688899999999999999999977543 1 3467888999999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhh
Q 007077 318 KP-DKFILVALLTGCAQLGALEQGKWIHGYINEN------RI-TVDAVVATALIEMYAKCGLIEKALEIFYELREKDAAS 389 (619)
Q Consensus 318 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 389 (619)
.| ....+..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------- 177 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ--------- 177 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 33 3457888889999999999999999887654 11 1122334445555555555555555544
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCC
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISG------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY------QIQP 456 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p 456 (619)
++.+. +..|+ ..++..+...+...|++++|...++.+.... ...+
T Consensus 178 ----------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 178 ----------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ----------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 43332 11222 2244455555555566666665555554320 0111
Q ss_pred C-------hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 457 K-------LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 457 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
. ...+..+...+...+.+.+|...++.... ..+....+|..+...|...|++++|...++++.++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV-DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11222233334455566666666666653 34556667899999999999999999999999887764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=127.60 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=157.3
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 007077 372 IEKALEIFYELRE---KDAASWTSIICGLAMNGKI-NKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFN 446 (619)
Q Consensus 372 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 446 (619)
++++...+++... .+...|..+...|...|++ ++|++.|++.++. .|+ ..++..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666665543 3678899999999999999 9999999999987 565 6789999999999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc--------CCH
Q 007077 447 TMTEVYQIQPKLEHYGCLIDLLGRA---------GLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY--------GNV 509 (619)
Q Consensus 447 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 509 (619)
...+ ..|+...+..+..+|... |++++|++.+++.... ++.+...|..+..++... |++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9984 468888999999999999 9999999999988732 444556799999999998 999
Q ss_pred HHHHHHHHHHhccCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 510 DMGEKLAALLEKIES---KDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++|+..++++.+++| .++.+|..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998863
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-12 Score=132.61 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=138.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 463 (619)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|+..|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3567788888888888888888888888876 666 567888888888889999999988888764 454 778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
+..+|.+.|++++|++.|++... -++....+|..+...+...|++++|+..|+++.+++|+++.++..++.+|...|+|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~-l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999988763 23445567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-11 Score=115.57 Aligned_cols=215 Identities=8% Similarity=-0.022 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hCCCH-------HHHHHHHHhcCC---C-ChhhHHHHHHHHHh
Q 007077 338 EQGKWIHGYINENRITVDAVVATALIEMYA-------KCGLI-------EKALEIFYELRE---K-DAASWTSIICGLAM 399 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 399 (619)
+.|..+|+++++.. +.++.+|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887763 667888888888776 45885 999999998765 2 56689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDD-I-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG-RAGLLDE 476 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 476 (619)
.|++++|..+|++.++. .|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999986 6653 3 7888889999999999999999999863 2334555554444432 3699999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhCCChHHHHHHHHH
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI---ESK-DSSFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
|.++|++.... .+.+...|..++..+...|++++|+.+|+++... .|+ ...+|..++..+.+.|++++|..++++
T Consensus 188 A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988632 3335567999999999999999999999999985 443 667889999999999999999999999
Q ss_pred HHhCCC
Q 007077 553 MKEMGV 558 (619)
Q Consensus 553 m~~~~~ 558 (619)
+.+...
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 987543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=112.44 Aligned_cols=190 Identities=12% Similarity=-0.030 Sum_probs=133.7
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELRE----KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGV 428 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 428 (619)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+. .|+. .++..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777778888888888888888887653 56666777788888888888888888888876 5553 467777
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc--cHHHHHHH
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKL-------EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI--IVPLYGAL 499 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 499 (619)
...+...|++++|...++...+.. +.+. ..|..+...+...|++++|++.|+++... ++. ....|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-CCCcccHHHHHHH
Confidence 778888888888888888877642 2223 45677777777888888888888877733 334 44556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
...+... +...++++..+.+.++..|... .....+.+++|...+++..+
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 6666443 4455666777766665544333 33455667999999999877
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=115.22 Aligned_cols=231 Identities=8% Similarity=-0.011 Sum_probs=162.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC------CCChhHHH
Q 007077 292 MINGYVQFNRFDEAVALFREMQII----RLKP-DKFILVALLTGCAQLGALEQGKWIHGYINENRI------TVDAVVAT 360 (619)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 360 (619)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777666542 1111 123556666666677777777766666554210 11234667
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMNGKINKALELFSQMISG----GAKPD-DITFI 426 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 426 (619)
.+...|...|++++|...|++..+. + ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888876531 1 247888899999999999999999998762 22244 45788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGL---LDEAEELIRKIPNENNEIIVPLYGALL 500 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 500 (619)
.+...+...|++++|...+++......-.++ ...+..+...|...|+ +++|+.++++... .+.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 8889999999999999999987654211122 3345678888899999 9999999998842 333444678889
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p 524 (619)
..|...|++++|...++++.++..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-10 Score=110.07 Aligned_cols=265 Identities=12% Similarity=-0.016 Sum_probs=178.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCcHHHHHHHHHHHHHcCC-CCC----hhHHHH
Q 007077 291 AMINGYVQFNRFDEAVALFREMQIIRLKPDKF----ILVALLTGCAQLGALEQGKWIHGYINENRI-TVD----AVVATA 361 (619)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 361 (619)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+....+..- ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566777777777777766543222222 344555566677777777777776654210 111 123456
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK-----------DAASWTSIICGLAMNGKINKALELFSQMISGGAK--P--DDITFI 426 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~ 426 (619)
+...+...|++++|...+++.... ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777788888888888888775421 1234566778888999999999999988764221 1 124667
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCCCc---ccHHHHHH
Q 007077 427 GVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYG-----CLIDLLGRAGLLDEAEELIRKIPNENNE---IIVPLYGA 498 (619)
Q Consensus 427 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ 498 (619)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++....... .....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777888899999999999998875422111111222 2334577899999999999988743211 11234677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKD------SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+...+...|++++|...++++....+.. ..++..++.++...|++++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888999999999999999887654332 13567789999999999999999998864
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-11 Score=106.27 Aligned_cols=162 Identities=18% Similarity=0.116 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLG 469 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 469 (619)
|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444555555555555555544331 122344555555555556666666665555543 1233455556666666
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
..|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+..|+++.++..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655421 2223445777777777788888888888888777787777788888888888888888888
Q ss_pred HHHHHh
Q 007077 550 RQKMKE 555 (619)
Q Consensus 550 ~~~m~~ 555 (619)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-11 Score=106.97 Aligned_cols=206 Identities=10% Similarity=0.010 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHH
Q 007077 319 PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIIC 395 (619)
Q Consensus 319 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 395 (619)
.|...+......+...|++++|...+....+...+++...+..+..++...|++++|+..|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3557788888899999999999999999999874477788888999999999999999999987643 5678899999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 007077 396 GLAMNGKINKALELFSQMISGGAKPD-D-------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCL 464 (619)
Q Consensus 396 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 464 (619)
.|...|++++|+..|++.++. .|+ . ..|..+...+...|++++|...|+...+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999987 554 3 3477777888899999999999999874 3565 5778888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..+|...|+. .++++..-. ......|.... ....+.+++|+..++++.++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888776653 222222111 11122244433 44567799999999999999999998777776653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-10 Score=111.41 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY---QIQPKLEH 460 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~ 460 (619)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444445555555555555555544331 11111 1244555555555666666666655554310 11112445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP----NENNEIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIESKDSSFHTLL 533 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 533 (619)
+..+..+|.+.|++++|.+.+++.. ..+++.....+..+...+...|+ +.+|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 5556666666666666666665433 11233333334444444555555 55555555542 2223333445667
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 007077 534 ANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~ 554 (619)
+.+|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777776664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-10 Score=101.73 Aligned_cols=170 Identities=12% Similarity=-0.004 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007077 357 VVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS 433 (619)
Q Consensus 357 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 433 (619)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666778888999999999999988753 67788889999999999999999999988762 334668888888999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
..|++++|...++.+... .+.+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998875 2456788889999999999999999999987632 3344566899999999999999999
Q ss_pred HHHHHHhccCCCCcchH
Q 007077 514 KLAALLEKIESKDSSFH 530 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~ 530 (619)
..++++.+..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999998877643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=115.38 Aligned_cols=298 Identities=10% Similarity=0.025 Sum_probs=212.1
Q ss_pred cCChhHHHHHHHHH--HhcCChhhHHHHhccCCC--------CCchhHHHHHHHH--HhcCC---HH---------HHHH
Q 007077 221 EFTPIMGNALLDMY--CKCGCLSEARELFDEMPN--------KNVICWTSMVSGY--VNCGQ---LE---------KARD 276 (619)
Q Consensus 221 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~--~~~g~---~~---------~A~~ 276 (619)
.++..+-+.+-+.| .+.+++++|.++++++.+ .++..|-.++..- .-.+. .. +..+
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35566667777777 889999999988877643 2233334333321 11111 11 3333
Q ss_pred HHccCCCC-C-h---hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 277 LFDRSPVR-D-I---VLWTAMINGYVQFNRFDEAVALFREMQIIRL-KPD----KFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 277 ~~~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
..+....+ + . ..|......+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+..
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33322222 1 1 1233445567889999999999999875421 122 34677888899999999999999998
Q ss_pred HHHcCC-----C-CChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHH
Q 007077 347 INENRI-----T-VDAVVATALIEMYAKCGLIEKALEIFYELRE-----KD----AASWTSIICGLAMNGKINKALELFS 411 (619)
Q Consensus 347 ~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 411 (619)
..+... . ....+++.+..+|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 865311 1 1245678899999999999999999988763 12 3578889999999999999999999
Q ss_pred HHHH-----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHH
Q 007077 412 QMIS-----GGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGL---LDEAEE 479 (619)
Q Consensus 412 ~m~~-----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~ 479 (619)
+..+ . .|. ..++..+...+.+.|++++|...+++......-.++ ...+..+...|...|+ +++|+.
T Consensus 247 ~al~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 247 KAAKVSREKV--PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHhhC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9887 4 344 567888889999999999999999998875332222 3456677777888888 999999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
.+++... .+.....+..+...|...|++++|...++++.+.
T Consensus 325 ~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9998542 3333445778889999999999999999988654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-10 Score=102.86 Aligned_cols=210 Identities=9% Similarity=-0.005 Sum_probs=140.4
Q ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---C---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHHH
Q 007077 354 VDAVVATALIEMYAKCGLIEKALEIFYELREK---D---AASWTSIICGLAMNGKINKALELFSQMISGGA-KPD-DITF 425 (619)
Q Consensus 354 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 425 (619)
.+...+..+...+.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|+..|++.++... .|. ..++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666666777777777777777776532 2 44566667777777777777777777776511 112 2345
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 426 IGVLSACSH--------GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 426 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
..+..++.. .|++++|...|+.+.+.+ |+ ......+.......+.. ...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~------------------~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL------------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH------------------HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH------------------HHHH
Confidence 555566666 677777777777776542 32 22222211111110000 1114
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCcccCc
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLLANIYASA----------NRWEDVTNVRQKMKEMGVRKVPG 563 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~ 563 (619)
..+...+...|++++|+..++++.+..|+++ .++..++.+|... |++++|...++++.+...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----- 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----- 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----
Confidence 6678889999999999999999999999854 4788999999877 999999999999987432
Q ss_pred eeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 564 CSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
.+|........+.++...+++.....
T Consensus 227 ------------------~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 227 ------------------DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp ------------------TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ------------------CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 25667888888999998888765444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=108.78 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISG------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY-----QIQP 456 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p 456 (619)
++..+...|...|++++|+..|++.... .-.|+ ..++..+...+...|++++|..++++..... +..|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445555555555555555555554432 11122 3355566666666666666666666665430 0012
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCCcccHHHHHHHHHHHHHcCC------HHHHHHHHHHHhc
Q 007077 457 -KLEHYGCLIDLLGRAGLLDEAEELIRKIPN--------ENNEIIVPLYGALLSACRIYGN------VDMGEKLAALLEK 521 (619)
Q Consensus 457 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~ 521 (619)
....+..+..+|.+.|++++|.+.++++.. .........|..+.......+. +..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 244566666677777777777776665431 0111112224333333333222 3333333333333
Q ss_pred cCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 522 IESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 522 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..|....++..++.+|...|++++|.+++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566778888888888888888888888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-08 Score=97.09 Aligned_cols=265 Identities=11% Similarity=-0.022 Sum_probs=149.5
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCChh----hHHHHHHHhhcCCChHHHHHHHHHHHHhc--cCCh----hHHHHH
Q 007077 161 ISGHVKCMRFEDAVDVFRRMRQGCNLMPDEG----TVVSTLSACTALKNLELGKEIHRYINQEL--EFTP----IMGNAL 230 (619)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~l 230 (619)
...+...|++++|...+++... ..-..+.. .+..+...+...|+++.|...++...... ..+. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445567777777777777655 22111111 23333444556667777766666655541 1111 224556
Q ss_pred HHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCC----ChhhHHHHHHHHHHcCChhHHH
Q 007077 231 LDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVR----DIVLWTAMINGYVQFNRFDEAV 306 (619)
Q Consensus 231 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 306 (619)
...+...|++++|...+++. ..+......+ ....+..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66677777777777655542 2233322222 2245666777888889999998
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-hhHHH-----HHHHHHHhCCCHHHHH
Q 007077 307 ALFREMQIIRLK----PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD-AVVAT-----ALIEMYAKCGLIEKAL 376 (619)
Q Consensus 307 ~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~ 376 (619)
..+++....... ....++..+...+...|++++|...++......-.++ ...+. ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888887653221 1234566677777788888888888877765321111 11111 2334466778888888
Q ss_pred HHHHhcCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 007077 377 EIFYELREKDA-------ASWTSIICGLAMNGKINKALELFSQMISG----GAKPDD-ITFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 377 ~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~ 444 (619)
..+++....+. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88877664321 13455666677777777777777765432 111111 1334444555566666666666
Q ss_pred HHHhHH
Q 007077 445 FNTMTE 450 (619)
Q Consensus 445 ~~~~~~ 450 (619)
++....
T Consensus 316 l~~al~ 321 (373)
T 1hz4_A 316 LLDALK 321 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=122.12 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=119.8
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 419 KPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 419 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
.|+ ..+++.+...+...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++... -++....+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~P~~~~a~ 80 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTFADAY 80 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHH
Confidence 465 458999999999999999999999999865 455 78899999999999999999999998873 244456679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+..++...|++++|++.++++.+++|+++.+|..++.+|.+.|++++|++.+++..+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999886
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-10 Score=104.57 Aligned_cols=172 Identities=9% Similarity=-0.055 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC------
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMN-GKINKALELFSQMISGGAKPD------ 421 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 421 (619)
+++.+..+|.+.|++++|+..|++..+. + ..+++.+...|... |++++|+..|++.++. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 3344444444444444444444443311 1 23456666677775 7777777777776553 111
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCccc--
Q 007077 422 -DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-----EHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEII-- 492 (619)
Q Consensus 422 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-- 492 (619)
..++..+...+...|++++|...|+.......-.+.. ..|..+..++...|++++|...+++... .|..+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356666677777777777777777776542111111 1456666777777777777777777652 121111
Q ss_pred -HHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 493 -VPLYGALLSACR--IYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 493 -~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
...+..++.++. ..+++++|+..|+++..++|.....+.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 112333444443 345677777777777666665544333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-09 Score=96.80 Aligned_cols=181 Identities=10% Similarity=-0.040 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELRE--KD----AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI----TF 425 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 425 (619)
...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|++.++. .|+.. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34445566667777777777777777653 22 235666777777777777777777777765 34321 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 426 IGVLSACSH------------------GGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 426 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
..+..++.. .|+.++|...|+.+.+. .|+ ...+........ .....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH--------
Confidence 333344332 34555555555555532 222 111111110000 00000
Q ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 487 ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS---SFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
......+...+...|++++|+..++++.+..|+++ .++..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00123456678899999999999999999999986 46889999999999999999999999876654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-09 Score=100.64 Aligned_cols=204 Identities=11% Similarity=-0.012 Sum_probs=148.0
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-C---hhh
Q 007077 319 PDKFILVALLTGCAQLGALEQGKWIHGYINENRITVD---AVVATALIEMYAKCGLIEKALEIFYELRE--K-D---AAS 389 (619)
Q Consensus 319 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~ 389 (619)
.+...+......+.+.|++++|...++.+.+.. +.+ ...+..+..+|.+.|++++|...|+++.+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345677778888999999999999999998864 333 66788899999999999999999999874 2 2 346
Q ss_pred HHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 007077 390 WTSIICGLAM--------NGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEH 460 (619)
Q Consensus 390 ~~~l~~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 460 (619)
+..+..++.. .|++++|+..|++.++. .|+.. ..... ..+...... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999987 56532 22111 111111110 0123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCcc
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIY----------GNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+..+..+|.+.|++++|+..|+++.. .|+.+ ....+..+..++... |++++|+..++++.+..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 56678889999999999999988762 23322 445677777788766 8999999999999999999875
Q ss_pred h---HHHHHHHHHhCCChH
Q 007077 529 F---HTLLANIYASANRWE 544 (619)
Q Consensus 529 ~---~~~l~~~~~~~g~~~ 544 (619)
+ ...+..++.+.|+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 344454544444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-10 Score=105.55 Aligned_cols=204 Identities=8% Similarity=-0.020 Sum_probs=148.1
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-----C----hhhHHHHHHHHHhCCChHHH
Q 007077 336 ALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-----D----AASWTSIICGLAMNGKINKA 406 (619)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A 406 (619)
++++|...+... ...|...|++++|...|.+..+- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477887777665 44678889999999988876531 2 46889999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHH
Q 007077 407 LELFSQMISGGA---KPD--DITFIGVLSACSHG-GLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 407 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 476 (619)
+..|++.++... .+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999875311 111 34788888899986 9999999999998764321111 3568889999999999999
Q ss_pred HHHHHhhCCCC-CCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hCCCh
Q 007077 477 AEELIRKIPNE-NNEII-----VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF-----HTLLANIYA--SANRW 543 (619)
Q Consensus 477 A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 543 (619)
|++.|++.... +..+. ...|..+..++...|++++|+..++++.+++|+.... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987622 22221 1257778888999999999999999999999986653 344566664 45678
Q ss_pred HHHHHHHHHHH
Q 007077 544 EDVTNVRQKMK 554 (619)
Q Consensus 544 ~~A~~~~~~m~ 554 (619)
++|+..++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88887776543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-09 Score=100.35 Aligned_cols=199 Identities=11% Similarity=0.052 Sum_probs=112.0
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC----------
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINEN------RI-TVDAVVATALIEMYAKCGLIEKALEIFYELREK---------- 385 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 385 (619)
++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|+++.+.
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444445555554444444332 11 122334555566666666666666665554321
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----
Q 007077 386 -DAASWTSIICGLAMNGKINKALELFSQMISG------GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVY----- 452 (619)
Q Consensus 386 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 452 (619)
...++..+...|...|++++|...|++..+. +-.|+ ..++..+...+...|++++|..+++...+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2345666777777777777777777776654 11333 3467777788888888888888888776531
Q ss_pred -CCCCC-hhHHHHHHHHHHh------cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007077 453 -QIQPK-LEHYGCLIDLLGR------AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKI 522 (619)
Q Consensus 453 -~~~p~-~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (619)
...+. ...|..+...+.. ...+.++...++... ...+....++..+...+...|++++|...++++.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK-VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC-CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 2334334333333 233555555555554 234455667888999999999999999999988765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-09 Score=97.44 Aligned_cols=182 Identities=12% Similarity=0.102 Sum_probs=126.8
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 340 GKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE-----KDAASWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 340 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
+...++...+.+ +++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 34455555777788888888888888887643 245667777888889999999999999988
Q ss_pred HCCCCC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 415 SGGAKP-----DDITFIGVLSAC--SHGG--LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 415 ~~g~~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+. .| +..+...+..++ ...| +..+|..+|+++... .|+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 67 355666666553 3333 888999999998654 3553333344447888999999999987654
Q ss_pred CC-C--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 486 NE-N--------NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 486 ~~-~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.. | ++.+..++..++......|+ +|.++++++.+..|+++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 31 0 23445556566666666777 8889999999999998873
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=97.62 Aligned_cols=144 Identities=11% Similarity=-0.025 Sum_probs=106.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG 472 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 472 (619)
...+...|++++|++.+++.... .|+. ..+..+...|...|++++|.+.|++..+.. +-+...|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 34445567777888877776654 4443 356667777888888888888888877641 334677888888888888
Q ss_pred CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 473 LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKL-AALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 473 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
++++|+..|++... -++.+..+|..+...+.+.|++++|.+. ++++.+++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVE-LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888887762 2344455688888889999998776655 689999999999999888888888775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=87.58 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=81.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.++++... .+.....+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 334444555555555555555555442 1223445555555666666666666666555421 2223344667777777
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7788888888888887777877777778888888888888888888877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=91.00 Aligned_cols=175 Identities=10% Similarity=-0.032 Sum_probs=137.8
Q ss_pred HHHHHHhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 007077 375 ALEIFYELRE-KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG----LVDEGRRFFNTMT 449 (619)
Q Consensus 375 A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 449 (619)
|.+.|++..+ .++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4455554443 467778888888888889999999999888775 45566677777777 6 8999999999886
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 007077 450 EVYQIQPKLEHYGCLIDLLGR----AGLLDEAEELIRKIPNENNE-IIVPLYGALLSACRI----YGNVDMGEKLAALLE 520 (619)
Q Consensus 450 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 520 (619)
+. -+...+..|..+|.. .+++++|+++|++....+.. .....+..|...|.. .+++++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 356778888888877 88999999999998865442 124458888888888 889999999999998
Q ss_pred ccCCCCcchHHHHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 007077 521 KIESKDSSFHTLLANIYASA-N-----RWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 521 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 558 (619)
+. |+++.++..|+.+|... | ++++|.+++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 77777899999999865 3 89999999999988664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-10 Score=94.57 Aligned_cols=124 Identities=11% Similarity=-0.065 Sum_probs=102.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY 506 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (619)
|...+...|++++|+..++.... ..|+ ...+..+..+|.+.|++++|++.|++... -++.+..+|..+...+...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Confidence 34556778999999999988753 3343 45667789999999999999999999873 2444566799999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHH-HHHHHh
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNV-RQKMKE 555 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 555 (619)
|++++|+..|+++.+++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 577765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-08 Score=91.11 Aligned_cols=176 Identities=11% Similarity=0.048 Sum_probs=135.8
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 375 ALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 375 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
|+..|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7788887663 4556667888999999999999999999887753234 45777888999999999999999999976
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 451 VYQIQP-----KLEHYGCLIDL--LGRAG--LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 451 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
. .| +-.+...++.+ ....| ++.+|..+|+++.... |+...-..++.++.+.|++++|++.++.+.+
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56 34555556555 33334 9999999999987443 2211233344488999999999999998877
Q ss_pred c----------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 522 I----------ESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 522 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
. +|+++.+...++.+....|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 58899988788878888887 8999999998743
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-10 Score=117.45 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=103.1
Q ss_pred HccCcHHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhC
Q 007077 332 AQLGALEQGKWIHGYIN--------ENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMN 400 (619)
Q Consensus 332 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 400 (619)
...|++++|.+.++.+. +. .+.+...+..+..+|...|++++|+..|+++.+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55666666666666665 22 133445556666666666666666666665542 2455666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007077 401 GKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
|++++|+..|++.++. .|+ ...+..+..++...|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655 443 3455555666666666666 66666665431 2234556666666666666666666
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCcc
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIYGN-----VDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 528 (619)
.|+++... ++.....|..+..++...|+ .+...+..+....+.+.++.
T Consensus 556 ~~~~al~l-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPT-SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTT-STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhccc-CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 66666522 33334445555555544443 23333333344444444444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-09 Score=99.37 Aligned_cols=177 Identities=8% Similarity=-0.032 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 372 IEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 372 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
.+.....+......+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344445555555556667778888889999999999999998887 665 45788888899999999999999998865
Q ss_pred hcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--c
Q 007077 451 VYQIQPKLEHYGCL-IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD--S 527 (619)
Q Consensus 451 ~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~ 527 (619)
. .|+....... ...+.+.|+.++|++.+++... .++.+...+..+...+...|++++|+..++++.+.+|++ .
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 4 4554433332 3346677788888888887762 244455569999999999999999999999999999998 8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 528 SFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
.++..++.+|...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 889999999999999999999888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.7e-09 Score=84.67 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=99.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++.+... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777788888888888888877652 234556777777788888888888888887764 234466777788888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD 526 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 526 (619)
...|++++|.+.++++... .+.....+..+...+...|++++|...++++.+..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8888888888888876632 22334557788888888899999999988888887753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-09 Score=84.72 Aligned_cols=96 Identities=8% Similarity=-0.053 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
..+......|.+.|++++|++.|++... -++.+..+|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK-RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444555555566666666666655541 123334445556666666666666666666666666666666666666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 007077 539 SANRWEDVTNVRQKMKE 555 (619)
Q Consensus 539 ~~g~~~~A~~~~~~m~~ 555 (619)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-09 Score=91.54 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=57.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD--SSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
|++.+++... -++.+...+..+...+...|++++|+..++++.+.+|+. +.++..++.++...|+.++|...+++..
T Consensus 93 a~~~~~~al~-~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELA-ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4555555441 123344557888888888888888888888888888864 4578888888888899888888888765
Q ss_pred h
Q 007077 555 E 555 (619)
Q Consensus 555 ~ 555 (619)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-09 Score=87.63 Aligned_cols=104 Identities=12% Similarity=-0.010 Sum_probs=89.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 453 QIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 453 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
.+.|+ ...+..+...+.+.|++++|++.|+++.. -+|.+...|..+..++...|++++|+..|+++.+++|+++.+|.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34454 56777888889999999999999998873 24455667999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
.++.+|...|++++|.+.+++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998743
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-07 Score=88.85 Aligned_cols=164 Identities=9% Similarity=-0.027 Sum_probs=124.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGA-KPDDI----TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYG 462 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 462 (619)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++.......-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887421 22221 2334566677788999999999998874222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC------CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchH
Q 007077 463 CLIDLLGRAGLLDEAEELIRKIPN------ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFH 530 (619)
Q Consensus 463 ~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 530 (619)
.+..+|...|++++|++.++++.. ...+....++..+...|...|++++|+..++++.++.+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999988761 2223334478899999999999999999999998766443 5678
Q ss_pred HHHHHHHHhCCC-hHHHHHHHHHHHh
Q 007077 531 TLLANIYASANR-WEDVTNVRQKMKE 555 (619)
Q Consensus 531 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 555 (619)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998863
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-06 Score=88.67 Aligned_cols=373 Identities=9% Similarity=-0.028 Sum_probs=212.5
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHHhHhcCChhHHHHHHccCCC--CCeecHHHHHHHHHcCCC-hhHHHH
Q 007077 100 WLG-EVKKGEKVHGYVVKTGLEFDTYVCNSIMDMYGVLGKICNVKKLFDEMPD--KDVVSWNVSISGHVKCMR-FEDAVD 175 (619)
Q Consensus 100 ~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~ 175 (619)
+.| ++..|+.+++.++..- |. |+++.+..+|++... |++..|...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 3777888888777622 22 889999999988765 777788888877766663 455677
Q ss_pred HHHHhHhcCCCCC-ChhhHHHHHHHhhc----CCChHHHHHHHHHHHHhccCC--hhHHHHHHHHHHhcCChhhHHHHhc
Q 007077 176 VFRRMRQGCNLMP-DEGTVVSTLSACTA----LKNLELGKEIHRYINQELEFT--PIMGNALLDMYCKCGCLSEARELFD 248 (619)
Q Consensus 176 ~~~~m~~~~~~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 248 (619)
+|+......|..| +...|...+..+.. .++.+.+..+++.++.. |.. ...|......-. ......+..+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~ 147 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFEL-ELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHH-HHCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHH-HhccccHHHHHH
Confidence 7877665345433 55566666665442 35677788888888873 322 122222222111 111222222221
Q ss_pred cCCCCCchhHHHHHHHHHh-cCCHHHHHHHHccCCCCChhhHHHHHHHHHHcC--C-----hhHHHHHHHHHHHcCCCCC
Q 007077 249 EMPNKNVICWTSMVSGYVN-CGQLEKARDLFDRSPVRDIVLWTAMINGYVQFN--R-----FDEAVALFREMQIIRLKPD 320 (619)
Q Consensus 249 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~ 320 (619)
+.. ..|.+ ...++++...+.+ .+...|...+.--...+ - .+.+..+|+++.... +.+
T Consensus 148 ~~~-----------~~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~ 212 (493)
T 2uy1_A 148 DTL-----------PIFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYA 212 (493)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred HHh-----------HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCC
Confidence 100 00000 0001222222221 13334544444322211 0 234667788877643 334
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHH-HHHHHhcC------------CCCh
Q 007077 321 KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKA-LEIFYELR------------EKDA 387 (619)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------------~~~~ 387 (619)
...+...+.-+.+.|+.+.|..+++..... |.+...+.. |....+.++. ..+.+... ....
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence 556666666677788888888888888877 444433332 2221111111 11111110 0012
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACS-HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
..|...+..+.+.+..+.|..+|++. ... .++...|......-. ..++.+.|..+|+...+.++ .+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 45667777777788899999999998 321 223334433222222 23469999999999988642 23456677888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
...+.|+.+.|..+|+++.. ....|...+..-...|+.+.+..++++..
T Consensus 363 ~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88889999999999999842 45668888888888899999999888775
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-08 Score=87.93 Aligned_cols=130 Identities=8% Similarity=-0.011 Sum_probs=99.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
.+..+|.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 3888999999999999999999987 565 5688888999999999999999999998752 3347788888888876
Q ss_pred cCC--HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 471 AGL--LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 471 ~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
.|. .+.+...+++... +.+ ....+.....++...|++++|+..++++.++.|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~-~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS-PTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---C-CCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HhHHHHHHHHHHHHHHhC-CCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 653 4556777777652 232 222344556667788999999999999999999754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-08 Score=106.74 Aligned_cols=161 Identities=10% Similarity=-0.052 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 007077 369 CGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRF 444 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 444 (619)
.|++++|.+.|++..+. +...|..+...|...|++++|.+.|++..+. .|+ ..++..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999987743 5778999999999999999999999999987 555 56888889999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHhc
Q 007077 445 FNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIY---GNVDMGEKLAALLEK 521 (619)
Q Consensus 445 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 521 (619)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++.... ++.+...+..+...+... |++++|...++++.+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998752 345788999999999999999999999988732 334455688999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 007077 522 IESKDSSFHTLLA 534 (619)
Q Consensus 522 ~~p~~~~~~~~l~ 534 (619)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988777666
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-08 Score=88.86 Aligned_cols=187 Identities=12% Similarity=-0.021 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC--C-Chh---hHHH
Q 007077 321 KFILVALLTGCAQLGALEQGKWIHGYINENRITV--DAVVATALIEMYAKCGLIEKALEIFYELRE--K-DAA---SWTS 392 (619)
Q Consensus 321 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 392 (619)
...+..+...+.+.|++++|...++.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | +.. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566778899999999999999998864211 135677889999999999999999999764 3 222 4555
Q ss_pred HHHHHHh------------------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007077 393 IICGLAM------------------NGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQ 453 (619)
Q Consensus 393 l~~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 453 (619)
+..++.. .|++++|+..|+++++. .|+.. +...... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999987 67653 2221111 001111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 454 IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 454 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.....+...|.+.|++++|+..|+++.. .|+.+ ....+..+..++.+.|++++|++.++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1223567888999999999999998773 23332 3356888899999999999999999999988888654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.7e-08 Score=92.05 Aligned_cols=224 Identities=13% Similarity=0.034 Sum_probs=157.1
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 298 QFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 298 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998876531 111 0 11146777777666543 456778888888888
Q ss_pred HHHhcCCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 007077 378 IFYELREK-----D----AASWTSIICGLAMNGKINKALELFSQMISGG---AKPD--DITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 378 ~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
.|.+..+- + ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88776531 1 4478888899999999999999999876431 1222 2467788888888 99999999
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCCccc-HHHHHHHHHHHHHcCCHHHHHH
Q 007077 444 FFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPN----ENNEII-VPLYGALLSACRIYGNVDMGEK 514 (619)
Q Consensus 444 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 514 (619)
.|++....+.-..+ ..++..+...|.+.|++++|++.|++... .+..+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988764321111 45788899999999999999999988762 122111 2256667777888899999999
Q ss_pred HHHHHhccCCCCcch-----HHHHHHHHHhCCChHHHHHH
Q 007077 515 LAALLEKIESKDSSF-----HTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 515 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 549 (619)
.++++. +.|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99876543 33455555 56777666653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.6e-08 Score=103.37 Aligned_cols=147 Identities=14% Similarity=-0.010 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
...|..+...|...|++++|+..|++.++. .|+ ...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg 508 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALA 508 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 344444555555555555555555555443 232 2344444445555555555555555544321 11234444555
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+|.+.|++++ ++.|++... -++.+...|..+..++...|++++|+..++++.+++|++..++..++.+|..
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWS-TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHHHcCChHH-HHHHHHHHH-hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 55555555555 555544431 1222233355555555555555555555555555555555555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=82.34 Aligned_cols=117 Identities=8% Similarity=-0.057 Sum_probs=96.1
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 418 AKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 418 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
+.|+. ..+......+.+.|++++|...|++..+. -+.+...|..+..+|.+.|++++|++.+++... -++.....|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHH
Confidence 45553 46777788888899999999999888764 234577888899999999999999999988773 244556679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
..+..++...|++++|++.|+++.+++|+++.++..|..++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888877653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=90.28 Aligned_cols=159 Identities=13% Similarity=0.014 Sum_probs=116.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPDD-ITFIG----------------VLSACSHGGLVDEGRRFFNTMTEVYQI 454 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~ 454 (619)
.....+...|++++|+..|++.++. .|+. ..+.. +..++...|++++|...|++..+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-- 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 3445566777777777777777665 5543 34444 7888999999999999999998752
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccCCCCcchHHH
Q 007077 455 QPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGN--VDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
+.+...+..+..+|...|++++|++.|++... -+|.+..+|..+...+...|+ .+.+...++++....|.. ..+..
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~ 162 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYR 162 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHH
Confidence 34578899999999999999999999999873 244455668888888766654 445566666665433322 23566
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 007077 533 LANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.++...|++++|...+++..+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 788888899999999999998763
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7.9e-09 Score=86.31 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+.+.|++++|+..|++... .++.+...|..+..++...|++++|+..++++..++|+++.++..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV-LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 55667778888888999999988888762 23445556888888899999999999999999999999999899999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-07 Score=84.21 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=101.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChhHHHHHHHHH----HhC---C
Q 007077 301 RFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLG--ALEQGKWIHGYINENRITVDAVVATALIEMY----AKC---G 370 (619)
Q Consensus 301 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 370 (619)
..++|+.++..+.. +.|+.. .++.--..+...+ +++++...+..++... +-+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 33577777777766 344443 3344444444555 6666666666665543 33334444333223 333 4
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc------H
Q 007077 371 LIEKALEIFYELRE---KDAASWTSIICGLAMNGKIN--KALELFSQMISGGAKP-DDITFIGVLSACSHGGL------V 438 (619)
Q Consensus 371 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~------~ 438 (619)
++++++.+++++.+ ++..+|+--.-.+.+.|.++ ++++.++++++. .| |..+|+.........|. +
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 55555555555442 23444444444444555554 555555555544 22 23344443333434333 4
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhhCCCC--CCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE-AEELIRKIPNE--NNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
+++.+.++.++.. -+-|...|+.+...+.+.|+..+ +.++..+.... ..+.+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 4455554444432 12234444444444444444222 22333333311 1122333344444444444444444444
Q ss_pred HHHHhc-cCCCCcchH
Q 007077 516 AALLEK-IESKDSSFH 530 (619)
Q Consensus 516 ~~~~~~-~~p~~~~~~ 530 (619)
++.+.+ .+|-....|
T Consensus 281 ~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHTTCGGGHHHH
T ss_pred HHHHHhccChHHHHHH
Confidence 444443 444444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-07 Score=90.98 Aligned_cols=356 Identities=11% Similarity=0.008 Sum_probs=163.9
Q ss_pred cCC-ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-hhhH
Q 007077 166 KCM-RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGC-LSEA 243 (619)
Q Consensus 166 ~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 243 (619)
+.| +++.|..+|+.+... -|. ++.+.+..+|+..+...| +...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHH
Confidence 345 377777787777551 122 888999999988888654 77788888887777663 3444
Q ss_pred HHHhccCCC------CCchhHHHHHHHHH----hcCCHHHHHHHHccCCC-C--Ch-hhHHHHHHHHHHc----------
Q 007077 244 RELFDEMPN------KNVICWTSMVSGYV----NCGQLEKARDLFDRSPV-R--DI-VLWTAMINGYVQF---------- 299 (619)
Q Consensus 244 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~---------- 299 (619)
..+|+.... .+...|...+.-+. ..++++.+..+|++... | +. ..|......-...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 555554331 34456666666543 23567777778776532 2 11 1222222211111
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--C--c---HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC
Q 007077 300 ---NRFDEAVALFREMQIIRLKPDKFILVALLTGCAQL--G--A---LEQGKWIHGYINENRITVDAVVATALIEMYAKC 369 (619)
Q Consensus 300 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (619)
+.+..|..+++++...-...+...+...+.--... + + .+.+..+++.++... +.+..+|...+..+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 11222233333322110001111222222221111 0 0 233445555555532 44455566666666666
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---------CCCCC---HHHHHHHHHHHhccCc
Q 007077 370 GLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG---------GAKPD---DITFIGVLSACSHGGL 437 (619)
Q Consensus 370 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------g~~p~---~~~~~~ll~~~~~~g~ 437 (619)
|++++|..+|++.... +.... +--.|....+.++. ++.+.+. +..+. ...|...+....+.+.
T Consensus 227 ~~~~~ar~i~erAi~~-P~~~~-l~~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM-SDGMF-LSLYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp TCHHHHHHHHHHHHHH-CCSSH-HHHHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhC-CCcHH-HHHHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 6666666666654322 11111 00112221111111 2222111 00011 1234444444444555
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 438 VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG-LLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
.+.|+.+|+.. .. . ..+...|...+..-.+.| +.+.|..+|+..... |+. ...|...+......|+.+.|..+
T Consensus 302 ~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 302 LELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666 21 1 123333333222222222 466666666655421 222 22355555555666666666666
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 516 AALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 516 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
|+++ +.....|...+..-...|+.+.+..+++++.
T Consensus 377 ~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 377 FKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6665 2234445555555555566666666665554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-08 Score=102.52 Aligned_cols=147 Identities=11% Similarity=-0.031 Sum_probs=101.4
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHH
Q 007077 334 LGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 334 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888877653 45677788888888888888888888887664 35667888888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHhhCC
Q 007077 411 SQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---GLLDEAEELIRKIP 485 (619)
Q Consensus 411 ~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 485 (619)
++..+. .|+ ...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888876 454 5677788888888888888888888887642 33467778888888888 88888888888776
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.9e-08 Score=86.39 Aligned_cols=134 Identities=13% Similarity=-0.034 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
..+..+...+...|++++|+..|++.. .|+..++..+...+...|++++|...|+...... +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHH
Confidence 345667777888899999988888763 6677788888888888889999988888887642 3456778888888
Q ss_pred HHhcCCHHHHHHHHhhCCC-CCCc--------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 468 LGRAGLLDEAEELIRKIPN-ENNE--------------IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~-~~~~--------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
|...|++++|++.|++... .+.. .....|..+..++...|++++|...++++.++.|++.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8888888888888887652 1211 1235677888888888888888888888888888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-07 Score=89.87 Aligned_cols=168 Identities=7% Similarity=-0.072 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--h
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDD-----ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQI--QPK--L 458 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 458 (619)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...++.......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888776322111 12334555667888999999999887753111 122 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------C
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIP----NENNEI--IVPLYGALLSACRIYGNVDMGEKLAALLEKIESK------D 526 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 526 (619)
.+|+.+...|...|++++|++.++++. ..++.+ ...++..+...|...|++++|+..++++.++.+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999998765 122222 2257889999999999999999999999766533 1
Q ss_pred cchHHHHHHHHHhCCChHHH-HHHHHHHHh
Q 007077 527 SSFHTLLANIYASANRWEDV-TNVRQKMKE 555 (619)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 555 (619)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45688999999999999999 777887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-08 Score=91.46 Aligned_cols=158 Identities=9% Similarity=-0.057 Sum_probs=124.5
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHH
Q 007077 420 PD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGA 498 (619)
Q Consensus 420 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 498 (619)
|+ ...+..+...+...|++++|...|++..... +.+...+..+..+|.+.|++++|.+.++++... .+.....+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHH
Confidence 44 4567778888899999999999999998752 335778899999999999999999999999743 2222222333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEe
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLV 578 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (619)
....+...++.++|+..++++.+.+|+++.++..++.+|...|++++|...++++...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---------------------- 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---------------------- 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----------------------
Confidence 3334677888999999999999999999999999999999999999999999999873
Q ss_pred CCCCCCch--HHHHHHHHHHHHHHHHhccc
Q 007077 579 GDPSHSEM--KEIYSMLDRMAKTLLDSKQN 606 (619)
Q Consensus 579 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~~ 606 (619)
+|.. ...+..+..++..+.+..+.
T Consensus 249 ----~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 249 ----DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp ----CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred ----ccccccchHHHHHHHHHHHcCCCCcH
Confidence 3333 56677777777766554433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-08 Score=83.93 Aligned_cols=158 Identities=12% Similarity=-0.007 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSA-CS 433 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 433 (619)
....+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344566778888889999998888774 36677888888888999999999988887665 4443322221111 11
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCcccHHHHHHHHHHHHHcCCHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
..+....|...+++..+. .| +...+..+..++...|++++|.+.|+++... |.......+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222233467788887764 34 4778888999999999999999999887633 333334468888889999999999
Q ss_pred HHHHHHHHh
Q 007077 512 GEKLAALLE 520 (619)
Q Consensus 512 a~~~~~~~~ 520 (619)
|...|+++.
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.4e-06 Score=78.15 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CChhhHHHHHHHH----HhC---CChH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCG--LIEKALEIFYELRE---KDAASWTSIICGL----AMN---GKIN 404 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~~~ 404 (619)
.++|......++... |.+..+|+.-...+...| +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 357788888887765 556777888888888888 99999999998774 3566777665555 555 7899
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------HH
Q 007077 405 KALELFSQMISGGAKP-DDITFIGVLSACSHGGLVD--EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL------LD 475 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~ 475 (619)
+++.+++++.+. .| +-.+|..-.-.+.+.|.++ ++.++++.+.+.. +-|...|+.-..++.+.|. ++
T Consensus 128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999987 45 4567777777777778887 9999999998752 4567788877777777776 89
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCcchHHHHHHHHHhCCChHHHHHHHH
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM-GEKLAALLEKIE---SKDSSFHTLLANIYASANRWEDVTNVRQ 551 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (619)
++++.++++.. -++.+...|+.+...+.+.|+... ...+++++.+++ |.++.++..++++|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~-~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIV-KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH-HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999988873 355666679999888888887444 566788887776 8899999999999999999999999999
Q ss_pred HHHh
Q 007077 552 KMKE 555 (619)
Q Consensus 552 ~m~~ 555 (619)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-07 Score=82.02 Aligned_cols=160 Identities=9% Similarity=-0.080 Sum_probs=98.9
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhCC----ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELREK-DAASWTSIICGLAMNG----KINKALELFSQMISGGAKPDDITFIGVL 429 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 429 (619)
++..+..|...|...+++++|...|++..+. ++.++..|...|.. + ++++|+..|++..+.| +..++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4445555555555566666666666655433 45555666666655 4 6777777777776554 344555566
Q ss_pred HHHhc----cCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CCcccHHHHH
Q 007077 430 SACSH----GGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGR----AGLLDEAEELIRKIPNE-NNEIIVPLYG 497 (619)
Q Consensus 430 ~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~~~ 497 (619)
..|.. .+++++|..+|++..+. .|+ ...+..|..+|.. .+++++|.+.|++.... +++. .+.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~---a~~ 166 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGY---AEY 166 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTH---HHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHH---HHH
Confidence 66655 66777777777776542 332 5666777777776 67777888777776543 2222 366
Q ss_pred HHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 007077 498 ALLSACRIY-G-----NVDMGEKLAALLEKIES 524 (619)
Q Consensus 498 ~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 524 (619)
.|...|... | ++++|...++++.+...
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666666543 2 77888888877766543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=90.69 Aligned_cols=200 Identities=7% Similarity=-0.059 Sum_probs=151.6
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007077 333 QLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQ 412 (619)
Q Consensus 333 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 412 (619)
..|++++|.+++++..+..- .. .+...+++++|...|.++ ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 45778889888888766421 11 011158899998887763 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007077 413 MISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRK 483 (619)
Q Consensus 413 m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 483 (619)
..+. |-.+. ..+|..+...|...|++++|...|++....+.-..+ ..++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 247888888999999999999999987764321111 3577888999988 999999999987
Q ss_pred CCC----CCCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhCCChHHHHHHHHH
Q 007077 484 IPN----ENNE-IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS------SFHTLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 484 ~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
... .++. ....++..+...+...|++++|+..++++.++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 652 1111 1245688899999999999999999999998876554 2567788889999999999999999
Q ss_pred HH
Q 007077 553 MK 554 (619)
Q Consensus 553 m~ 554 (619)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-07 Score=79.00 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+.+.|++++|++.|++... .++.+...|..+..++...|++++|+..++++..++|+++.++..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM-LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 45566677788888889998888888762 23445556888888899999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=81.01 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=97.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSAC 503 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 503 (619)
.+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|.+.+++.... .+.+...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 4555566667777777777777777653 1334667777788888888888888888776622 333455688888899
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHH--HHHHHhCCChHHHHHHHHHHHh
Q 007077 504 RIYGNVDMGEKLAALLEKIESKDSSFHTLL--ANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
...|++++|...++++.+..|.++..+..+ +..+...|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998877444 4448888999999999987753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-08 Score=77.81 Aligned_cols=98 Identities=5% Similarity=-0.176 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+.+.|++++|++.|++.... ++.+...|..+..++...|++++|+..++++.+++|+++.++..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345666777888888888888888877622 3344566888888999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=86.02 Aligned_cols=137 Identities=13% Similarity=0.026 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLID 466 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 466 (619)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .|+ ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHHHHHHHH
Confidence 44566677788888888888877765 46554555555677788888888888875532 222 235677788
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCC-cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENN-EI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++.+.|++++|++.|++....+. +. ....+.....++.+.|+.++|...|+++...+|+ +.++..|.
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88888999999999888764433 22 3345677777888899999999999999998888 66454443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-07 Score=81.83 Aligned_cols=128 Identities=12% Similarity=0.013 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGL 437 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 437 (619)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566777788888888888888877778888888888888888888888888877762 2235577777788888888
Q ss_pred HHHHHHHHHHhHHhcCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007077 438 VDEGRRFFNTMTEVYQIQP--------------KLEHYGCLIDLLGRAGLLDEAEELIRKIPN 486 (619)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 486 (619)
+++|...|+...+...-.+ ....+..+..+|.+.|++++|.+.|++...
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888776421111 126777788888888888888888887663
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-07 Score=74.93 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
.++..+...+...|++++|...++.+.... +.+...+..++..+.+.|++++|...++++... .+.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHH
Confidence 456666667777777777777777776541 334566777777778888888888887776522 23344557888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
+...|++++|...++++.+..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999998888988888888887776544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=76.40 Aligned_cols=118 Identities=7% Similarity=-0.045 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|.+.+++.... .+.+...|..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHH
Confidence 45666666777777778887777777654 1335667777788888888888888888776622 23345568888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
+...|++++|...++++.+..|+++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998899999998888875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=76.83 Aligned_cols=117 Identities=6% Similarity=-0.047 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+...|++++|...|+..... .+.+...+..+..+|...|++++|++.+++.... .+.....|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 35555556666666666666666665532 1224556666666666677777777666665521 22344457777788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
+...|++++|+..++++.+..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.7e-08 Score=89.82 Aligned_cols=188 Identities=11% Similarity=-0.061 Sum_probs=119.0
Q ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007077 355 DAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLS 430 (619)
Q Consensus 355 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 430 (619)
+...+..+...+.+.|++++|...|++... .+...|..+..+|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344555666677777777777777776542 35667777777777788888888888777765 444 456777777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPK---LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
++...|++++|...|+...+...-.+. ...+..+ ...+...+.. ..... .+..+. ....+..+ ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~-~~~~~~---i~~~l~~l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERR-IHQESE---LHSYLTRL-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTC-CCCCCH---HHHHHHHH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHH-HhhhHH---HHHHHHHH-HHH
Confidence 777888888888888776653211110 1111111 1222222222 11222 222333 22222222 368
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC-CChHHHHHHHHHHHh
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANIYASA-NRWEDVTNVRQKMKE 555 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 555 (619)
++++|.+.++++.+++|++......+...+.+. +++++|.+++.++.+
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999888778888777776 778999999988865
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=81.44 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCCH--H
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA-CRIYGNV--D 510 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 510 (619)
..|++++|...++...... +.+...|..+..+|...|++++|...|++.... .+.+...|..+... +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4455666666666655431 234556666666666666666666666655421 12233345566666 5566776 7
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 511 MGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+|+..++++.+..|+++.++..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777777777776777777777777777777777776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-06 Score=78.01 Aligned_cols=161 Identities=10% Similarity=-0.019 Sum_probs=120.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCC---Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007077 362 LIEMYAKCGLIEKALEIFYELREK---DA------ASWTSIICGLAMNGKINKALELFSQMISGGAK-PD----DITFIG 427 (619)
Q Consensus 362 l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 427 (619)
.+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999886642 11 12334666777788999999999999884322 22 226888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcC----CCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-CcccHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQ----IQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPN----EN-NEIIVPLYG 497 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~ 497 (619)
+...|...|++++|..+|+.+.+... ..+. ..++..+..+|.+.|++++|++.+++... .+ ......+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999999875221 1111 34788899999999999999999987651 11 222355688
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHhcc
Q 007077 498 ALLSACRIYGN-VDMGEKLAALLEKI 522 (619)
Q Consensus 498 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 522 (619)
.+..++...|+ +++|...++++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999994 69999999988643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=90.38 Aligned_cols=145 Identities=12% Similarity=-0.018 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
...|..+...|.+.|++++|+..|++.++. .|+...+ ..+.+... .. .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-QA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH-HH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH-HH--------HHHHHHHHHHH
Confidence 445566666666666666666666666654 2322100 00111110 00 01357888899
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDV 546 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 546 (619)
+|.+.|++++|++.++++... ++.+...|..+..++...|++++|+..|+++.+++|+++.++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888732 4445667999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 007077 547 -TNVRQKMK 554 (619)
Q Consensus 547 -~~~~~~m~ 554 (619)
...+++|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=87.09 Aligned_cols=185 Identities=9% Similarity=-0.016 Sum_probs=134.8
Q ss_pred hCCCHHHHHHHHHhcCCC---ChhhHHHH-------HHHHHhCCChHHHHHHHHHHHHCCCCCCH---------------
Q 007077 368 KCGLIEKALEIFYELREK---DAASWTSI-------ICGLAMNGKINKALELFSQMISGGAKPDD--------------- 422 (619)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~---~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 422 (619)
..++...|.+.|.++... ....|..+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467777777777776532 45566666 4555555556666666665544 23332
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc-HH
Q 007077 423 -------ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII-VP 494 (619)
Q Consensus 423 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 494 (619)
.....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....+++.. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12334566788899999999999988642 46544667777789999999999999997764443321 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIE--SK-DSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|...++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888889999999999999999997543 44 44567899999999999999999999998743
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-07 Score=79.68 Aligned_cols=132 Identities=9% Similarity=-0.011 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcC---CCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-Cc-ccH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQ---IQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPN----EN-NE-IIV 493 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~-~~~ 493 (619)
++..+...+...|++++|...+++...... ..| ....+..+...|...|++++|.+.+++... .+ ++ ...
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 444455555555555555555555443111 111 133455566666666666666666655431 12 11 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--Cc----chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESK--DS----SFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+..+...+...|++++|+..++++.++.+. ++ .++..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34666666777777777777777777644321 11 2246777778888888888877777653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-07 Score=77.36 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---------C--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNE---------N--------NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
+......+.+.|++++|++.|++.... + ++....+|..+..++.+.|++++|+..++++++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344445555555555555555443311 1 23344568889999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchH-HHHHHHHHHHHHHHH
Q 007077 524 SKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMK-EIYSMLDRMAKTLLD 602 (619)
Q Consensus 524 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 602 (619)
|+++.+|..++.+|...|++++|...+++..+. +|... .+...+..+...+++
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998762 45555 677788888887776
Q ss_pred hccc
Q 007077 603 SKQN 606 (619)
Q Consensus 603 ~~~~ 606 (619)
..+.
T Consensus 148 ~~~~ 151 (162)
T 3rkv_A 148 KKAD 151 (162)
T ss_dssp HTTS
T ss_pred HHHH
Confidence 6544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.4e-07 Score=73.82 Aligned_cols=100 Identities=12% Similarity=-0.054 Sum_probs=89.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
.+...+..+...+.+.|++++|.+.+++.... .+.+..+|..+...+...|++++|+..++++.+..|+++.++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34677888999999999999999999987733 44456679999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 007077 536 IYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=76.75 Aligned_cols=107 Identities=8% Similarity=-0.080 Sum_probs=87.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHH
Q 007077 418 AKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLY 496 (619)
Q Consensus 418 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 496 (619)
+.|+. ..+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|++.|++...- +|.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CCCCcHHH
Confidence 35554 467778888899999999999999998742 345788899999999999999999999988721 33344459
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 007077 497 GALLSACRIYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 497 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
..+..++...|++++|+..|+++.++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-08 Score=87.57 Aligned_cols=171 Identities=8% Similarity=-0.047 Sum_probs=105.0
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
+......|+++++.+.++.-.+. ....+..+...+...|++++|+..|++.++. .|+...+... ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 33444556666666666543321 3455666777777888888888888877764 2221100000 000
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
.-. .. .....|..+..+|.+.|++++|+..+++.... ++.....+..+..++...|++++|+..++++
T Consensus 81 ~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 81 DKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 00 01356777888888999999999998887632 3445566889999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhCCChHHHH-HHHHHHHh
Q 007077 520 EKIESKDSSFHTLLANIYASANRWEDVT-NVRQKMKE 555 (619)
Q Consensus 520 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 555 (619)
.++.|+++.++..++.++...|+.+++. ..+..|..
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999888888777 55555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=75.59 Aligned_cols=97 Identities=9% Similarity=-0.112 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+..+...+.+.|++++|+..|++... .++.+...|..+..++...|++++|+..++++.+++|+++.++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ-KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455677788899999999999988873 2444566688899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCC
Q 007077 540 ANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 540 ~g~~~~A~~~~~~m~~~~ 557 (619)
.|++++|...+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999987643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-07 Score=77.93 Aligned_cols=116 Identities=9% Similarity=-0.018 Sum_probs=88.0
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007077 410 FSQMISGGAKPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNEN 488 (619)
Q Consensus 410 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 488 (619)
|+++... .|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|...|++++|++.|++....
T Consensus 10 ~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 10 IAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp HHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 4444433 5543 46666777888888899998888888764 2345777888888899999999999999887622
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 489 NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
++.+...|..+..++...|++++|+..++++.++.|+++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 233344588888999999999999999999999999888743
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.7e-06 Score=79.28 Aligned_cols=165 Identities=8% Similarity=-0.021 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCC---C------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HH
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELREK---D------AASWTSIICGLAMNGKINKALELFSQMISGGA---KPD--DI 423 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 423 (619)
.+...+..+...|++++|.+.+.+..+. . ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344566778888888888888765421 1 12234456667788899999999998875421 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCCcccH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPN-----ENNEIIV 493 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 493 (619)
+++.+...|...|++++|...+++..+.....|+ ..++..+..+|.+.|++++|++.+++... .......
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999988732211222 25788889999999999999999987651 1112225
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 007077 494 PLYGALLSACRIYGNVDMG-EKLAALLEKI 522 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 522 (619)
.+|..+...+...|++++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5688888999999999999 7778877643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-07 Score=72.74 Aligned_cols=100 Identities=11% Similarity=-0.069 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK--DSSFHTLLAN 535 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 535 (619)
...+..+...+.+.|++++|...+++.... .+.+...|..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 455666777778888888888888776522 2334456888888888999999999999999999998 8888899999
Q ss_pred HHHhC-CChHHHHHHHHHHHhCCC
Q 007077 536 IYASA-NRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 536 ~~~~~-g~~~~A~~~~~~m~~~~~ 558 (619)
+|... |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.2e-07 Score=70.00 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
.+..++..+...|++++|.+.+++.... .+.+...|..+...+...|++++|...++++.+..|+++..+..++.+|..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3344444444555555555555444311 112233344455555555555555555555555555555555555555555
Q ss_pred CCChHHHHHHHHHHHh
Q 007077 540 ANRWEDVTNVRQKMKE 555 (619)
Q Consensus 540 ~g~~~~A~~~~~~m~~ 555 (619)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.5e-07 Score=78.40 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=97.1
Q ss_pred hCCCHHHHHH---HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhccCcHH
Q 007077 368 KCGLIEKALE---IFYELREKDAASWTSIICGLAMNGKINKALELFSQMIS----GGAKPD-DITFIGVLSACSHGGLVD 439 (619)
Q Consensus 368 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~ 439 (619)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .|..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223455666677777777777777777777654 121222 235666667777888888
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCcc-cHHHHHHHHHHHHHcCCH
Q 007077 440 EGRRFFNTMTEVYQIQP-K----LEHYGCLIDLLGRAGLLDEAEELIRKIP----NENNEI-IVPLYGALLSACRIYGNV 509 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~ 509 (619)
+|...+++......-.+ + ...+..+...+...|++++|.+.+++.. ..+++. ...++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888777655322122 2 3456677778888888888888887654 111211 223456777788888999
Q ss_pred HHHHHHHHHHhccC
Q 007077 510 DMGEKLAALLEKIE 523 (619)
Q Consensus 510 ~~a~~~~~~~~~~~ 523 (619)
++|...++++.++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.2e-07 Score=74.00 Aligned_cols=100 Identities=9% Similarity=0.030 Sum_probs=84.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
.+...+..+...+...|++++|+..|++.... ++.+...|..+...+...|++++|+..++++.++.|+++.++..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45677788888888888888888888876622 33345568888889999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 007077 536 IYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999988763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=70.29 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+...|++++|.+.++++... .+.+..++..+...+...|++++|...++++.+..|+++..+..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 567888999999999999999999988732 3334566899999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 007077 538 ASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 538 ~~~g~~~~A~~~~~~m~~~ 556 (619)
...|++++|.+.++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998763
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-07 Score=77.84 Aligned_cols=110 Identities=7% Similarity=-0.116 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 007077 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLS 501 (619)
Q Consensus 422 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 501 (619)
...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.+++.... ++.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 3466667777777888888888888777642 234667777777777788888888777776622 3334555777777
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 502 ACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
++...|++++|+..++++.++.|+++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 777778888888888888777777777544333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-07 Score=74.44 Aligned_cols=95 Identities=6% Similarity=-0.065 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc-------hHHH
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS-------FHTL 532 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 532 (619)
.+..+...+.+.|++++|++.|++... -+|.+..+|..+..+|...|++++|+..+++++++.|++.. +|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~-~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE-LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 456677778888888888888877662 23444556888888888888888888888888888877653 4667
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 007077 533 LANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++.+|...|++++|++.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888888888888888765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=69.57 Aligned_cols=112 Identities=12% Similarity=-0.001 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+...|++++|...++..... .+.+...+..+..++.+.|++++|.+.+++.... .+.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 34555666666777777777777776653 1234666777777777778888887777766522 23344557888888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
+...|++++|...++++.+..|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88899999999999999999898888777766553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=71.13 Aligned_cols=99 Identities=13% Similarity=-0.013 Sum_probs=87.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
+...+..+...+...|++++|.+.+++.... .+.+...|..+...+...|++++|+..++++.+..|+++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3567788889999999999999999987632 333456688999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 007077 537 YASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~ 556 (619)
|...|++++|.+.+++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999998763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-06 Score=80.24 Aligned_cols=188 Identities=13% Similarity=-0.008 Sum_probs=105.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhC
Q 007077 324 LVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMN 400 (619)
Q Consensus 324 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 400 (619)
+..+...+...|++++|...+..+.+.. +.+...+..+..+|.+.|++++|...+++..+. +...+..+..+|...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444444432 335566667777777777777777777776542 556777778888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 007077 401 GKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
|++++|+..|++..+. .|+.. .+...+.... ....+... ...... ..+++......+...+ .|++++|++
T Consensus 86 g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp TCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 8888888888887764 33210 1111111111 11111121 112222 4445555544444433 688889988
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIY-GNVDMGEKLAALLEKI 522 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 522 (619)
.+++... .++.+......+...+... +.+++|.++|+++.+.
T Consensus 157 ~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHE-GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGT-TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhc-cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8887763 2444433444444444444 6788888888888653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.2e-07 Score=77.41 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=98.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH-
Q 007077 398 AMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL-LGRAGLL- 474 (619)
Q Consensus 398 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 474 (619)
...|++++|+..+++..+. .| +...+..+...+...|++++|...|+...... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 4567888888888888776 44 45678888888889999999999999887652 3456677788888 7788998
Q ss_pred -HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 475 -DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 475 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
++|...++++... ++.+...|..+...+...|++++|...++++.+..|+++...
T Consensus 97 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887632 334455688888999999999999999999999999987643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=82.55 Aligned_cols=146 Identities=8% Similarity=-0.044 Sum_probs=103.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcc---c-----------HHHHHH
Q 007077 434 HGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEI---I-----------VPLYGA 498 (619)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~-----------~~~~~~ 498 (619)
..|.++.+.+.|+..... .......+..+...+.+.|++++|++.|++... .+..+ . ..+|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555555433221 011234566677778888888888888877652 11111 1 256888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEe
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLV 578 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (619)
+..++...|++++|+..++++.++.|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------- 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------------------- 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999998762
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 579 GDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 579 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
+|....++..+..+...+.+..+..
T Consensus 152 ----~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 ----NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ----STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888887776655443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.5e-07 Score=71.20 Aligned_cols=113 Identities=10% Similarity=-0.080 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+......+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|++.+++.... ++.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence 34555666667777777777777777653 1334667777777888888888888888776622 33345568888888
Q ss_pred HHHcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHH
Q 007077 503 CRIYGNVDMGEKLAALLEKIE------SKDSSFHTLLANIYA 538 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 538 (619)
+...|++++|+..++++.+++ |.++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888899999999999988888 777776666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.1e-07 Score=73.78 Aligned_cols=113 Identities=12% Similarity=-0.000 Sum_probs=83.7
Q ss_pred CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHH
Q 007077 419 KPDD-ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYG 497 (619)
Q Consensus 419 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 497 (619)
.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++.... ++.+...|.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHH
Confidence 4443 35556666777888888888888887764 1335677788888888888888888888877622 233344588
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLA 534 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 534 (619)
.+..++...|++++|+..++++.++.|+++.......
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 8888899999999999999999999998887544433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-06 Score=70.67 Aligned_cols=111 Identities=14% Similarity=-0.045 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGA 498 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 498 (619)
..+..+...+...|++++|...|+...+ ..|+ ...+..+..+|...|++++|++.+++.... .+.+...|..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHH
Confidence 3444555555555555555555555542 2343 445556666666666666666666655421 2223445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
+..++...|++++|...++++.++.|+++.++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777777778888888888888777777777666555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-06 Score=73.77 Aligned_cols=95 Identities=18% Similarity=0.042 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
...|..+...+...|++++|+..|++.++. .| +...+..+..++...|++++|...|+...+.. +.+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 344555555666666666666666665554 33 33455555555666666666666666655431 22345555566
Q ss_pred HHHHhcCCHHHHHHHHhhCC
Q 007077 466 DLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~ 485 (619)
.+|.+.|++++|.+.|++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 66666666666666665544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.6e-06 Score=69.80 Aligned_cols=100 Identities=11% Similarity=-0.045 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII---VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
.+...+..+...+...|++++|++.|++.... .+.+ ...|..+...+...|++++|+..++++.+..|+++.++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34677888999999999999999999988743 2222 5668889999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 007077 533 LANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++.+|...|++++|.+.+++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999998763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-06 Score=71.21 Aligned_cols=128 Identities=9% Similarity=-0.109 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKP-DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
..|..+...+...|++++|...|++..+. .| +..++..+...+...|++++|...++...... +.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 44566667777777888888887777765 33 35567777777777888888888888777642 334667777778
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHH--HHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLY--GALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
++...|++++|.+.+++.... .+.+...+ ...+..+...|++++|...+++..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKV-KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888776521 12222234 333334667788888888877664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00021 Score=67.49 Aligned_cols=229 Identities=10% Similarity=0.059 Sum_probs=137.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC-cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhC-C-C
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKF-ILVALLTGCAQLG-ALEQGKWIHGYINENRITVDAVVATALIEMYAKC-G-L 371 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 371 (619)
....+..++|++++.++... .|+.. .++.--..+...+ .++++...+..+.... +-+..+|+.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 34455567788888888774 45443 3444444555566 4788888888877664 55666776666666655 6 7
Q ss_pred HHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc--
Q 007077 372 IEKALEIFYELREK---DAASWTSIICGLAMNGKIN--------KALELFSQMISGGAKP-DDITFIGVLSACSHGGL-- 437 (619)
Q Consensus 372 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~-- 437 (619)
+++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++++. .| |..+|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 78888888887764 4455655555555555555 788888888876 44 45567766666666664
Q ss_pred -----HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHhhCCCCC----
Q 007077 438 -----VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLL--------------------DEAEELIRKIPNEN---- 488 (619)
Q Consensus 438 -----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~---- 488 (619)
++++.+.++.++.. .+-|...|+.+-..+.+.|+. .+..+...++....
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67777777777753 234466777766666666543 33333434443221
Q ss_pred -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCcchHH
Q 007077 489 -NEIIVPLYGALLSACRIYGNVDMGEKLAALLE-KIESKDSSFHT 531 (619)
Q Consensus 489 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 531 (619)
...+...+..++..|...|+.++|.++++.+. +.+|-....|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 13444555566666666666666666666654 45555544443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-05 Score=73.55 Aligned_cols=214 Identities=14% Similarity=0.055 Sum_probs=156.9
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhC-C-ChHHHHHH
Q 007077 336 ALEQGKWIHGYINENRITVDAVVATALIEMYAKCG-LIEKALEIFYELREK---DAASWTSIICGLAMN-G-KINKALEL 409 (619)
Q Consensus 336 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-g-~~~~A~~~ 409 (619)
..++|..+...++... +.+..+|+.--..+...| .+++++.+++.+... +..+|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457888888888775 556777887777788888 599999999998753 667788777777766 6 89999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-------
Q 007077 410 FSQMISGGAKPD-DITFIGVLSACSHGGLVD--------EGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL------- 473 (619)
Q Consensus 410 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------- 473 (619)
++++++. .|. ..+|+.-.-.+.+.|.++ ++.+.++++.+.. +-|...|+....++.+.+.
T Consensus 148 ~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 148 IHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999977 454 556666555555555555 8999999998752 4567888888888888876
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV--------------------DMGEKLAALLEKIE------SKDS 527 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~ 527 (619)
++++++.++++.. -++.+...|+.+-..+.+.|+. .........+.... +..+
T Consensus 224 ~~eELe~~~~aI~-~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIH-LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 7899999988773 3555666688887777777654 23333333333322 5677
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 528 SFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+...|+++|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7788999999999999999999999864
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-07 Score=73.32 Aligned_cols=85 Identities=19% Similarity=0.146 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHhhCCCCC--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHH
Q 007077 471 AGLLDEAEELIRKIPNEN--NEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
.|++++|+..|++....+ ++.....|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466667777777666432 344555677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 007077 549 VRQKMKE 555 (619)
Q Consensus 549 ~~~~m~~ 555 (619)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-06 Score=69.36 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------cchHH
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD-------SSFHT 531 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 531 (619)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...++++.+..|++ +.++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45667777888888888888888876622 33345568888888999999999999999998888776 77789
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 007077 532 LLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-06 Score=70.39 Aligned_cols=102 Identities=8% Similarity=-0.174 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 007077 421 DDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALL 500 (619)
Q Consensus 421 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 500 (619)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...+++.... ++.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHH
Confidence 45566677777777777777777777776541 334667777777888888888888888776621 333455688888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 501 SACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
.++...|++++|+..++++.++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888888877
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.3e-06 Score=81.22 Aligned_cols=99 Identities=11% Similarity=-0.057 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CCc-------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NNE-------------IIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
...+..+...|.+.|++++|++.|++.... |.. ....+|..+..++.+.|++++|+..++++.+++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344555566666666666666666554411 111 014568999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 524 SKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 524 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
|+++.++..++.+|...|++++|...+++..+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999873
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.5e-06 Score=82.59 Aligned_cols=166 Identities=7% Similarity=-0.089 Sum_probs=109.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC-hhH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGG-AKPDDI----TFIGVLSACSHGGLVDEGRRFFNTMTEVY---QIQPK-LEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 460 (619)
+..++..|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+.+..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5566777777777777777777655421 112221 22223334456678888888877765421 22222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----C-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---C----cc
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIP----N-ENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK---D----SS 528 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~ 528 (619)
+..++..|...|++++|..++++.. . .+.+....++..++..|...|++++|..+++++....+. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788888888999999988887653 1 122334456788888899999999999998888655422 2 23
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456777788888999999888877653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=84.07 Aligned_cols=146 Identities=10% Similarity=-0.032 Sum_probs=102.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLI 465 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 465 (619)
....|..+...|.+.|++++|+..|++.++. .|+...+ . -+...+ ... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHH
Confidence 3456667777777778888888877777664 2222110 0 000000 000 1145788889
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
.+|.+.|++++|+..++++... ++.+...|..+..+|...|++++|+..|+++.+++|++..++..++.++.+.|++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988732 444566799999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHH
Q 007077 546 VTN-VRQKMK 554 (619)
Q Consensus 546 A~~-~~~~m~ 554 (619)
|.+ .+++|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 874 455554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.2e-06 Score=66.55 Aligned_cols=92 Identities=12% Similarity=-0.043 Sum_probs=53.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-CCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPN-ENNEI-IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD---SSFHTLLANIYA 538 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 538 (619)
+...+.+.|++++|.+.|+++.. .|..+ ....+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455556666666666655442 11111 11335556666666666666666666666666666 455666666666
Q ss_pred hCCChHHHHHHHHHHHh
Q 007077 539 SANRWEDVTNVRQKMKE 555 (619)
Q Consensus 539 ~~g~~~~A~~~~~~m~~ 555 (619)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=69.92 Aligned_cols=61 Identities=13% Similarity=-0.032 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKI-------ESKDSSFH----TLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.|..+..++.+.|++++|+..+++++++ +|++..+| ...+.+|...|++++|+..+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6888999999999999999999999999 99999999 9999999999999999999999876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.7e-06 Score=70.25 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------Ccc
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK------DSS 528 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 528 (619)
.+..+...+...|++++|.+.+++... .++ ......+..+...+...|++++|...++++.+..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 445555556666666666666554431 111 112334666677777788888888887777654321 234
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888899999999988888764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=88.30 Aligned_cols=120 Identities=9% Similarity=0.021 Sum_probs=92.1
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 430 SACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 430 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
..+...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|++.+++.... ++.+...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCH
Confidence 34566788888888888877641 234777888888888888888888888887632 444566788889999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHH--HHhCCChHHHHHHHHH
Q 007077 510 DMGEKLAALLEKIESKDSSFHTLLANI--YASANRWEDVTNVRQK 552 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 552 (619)
++|++.++++.++.|+++.++..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999998888888887 8888999999988874
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-06 Score=64.85 Aligned_cols=101 Identities=14% Similarity=-0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcc--cHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEI--IVPLYGALLS 501 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 501 (619)
.+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|.+.+++.... .+. ....|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHH
Confidence 4455555666666666666666666553 1234556666666777777777777777665522 222 4455777777
Q ss_pred HHHHc-CCHHHHHHHHHHHhccCCCCc
Q 007077 502 ACRIY-GNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 502 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 527 (619)
.+... |++++|++.++++....|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00013 Score=68.55 Aligned_cols=49 Identities=6% Similarity=-0.024 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHH---HhCCChHHHHHHHHHHHh
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIY---ASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 555 (619)
+.++++++.++++.++.|++...+..++... ...|..+++...+.++.+
T Consensus 252 ~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 252 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4467777788888888887755444433322 235666777777777765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-06 Score=67.06 Aligned_cols=100 Identities=8% Similarity=-0.138 Sum_probs=62.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 007077 425 FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACR 504 (619)
Q Consensus 425 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (619)
+..+...+...|++++|...|+...+. -+.+...|..+..++.+.|++++|+..|++.... ++.+...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 344455566677777777777776653 1234666677777777777777777777766521 3334445777777777
Q ss_pred HcCCHHHHHHHHHHHhccCCCCc
Q 007077 505 IYGNVDMGEKLAALLEKIESKDS 527 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~ 527 (619)
..|++++|+..++++.+..|++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 78888888888888877777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.3e-06 Score=80.22 Aligned_cols=112 Identities=4% Similarity=-0.072 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
..+..+...+.+.|++++|...|++..+.. |.. ......+++. ...+....+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~--------~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA--------KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG--------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH--------HHHHHHHHHHHHHHHH
Confidence 345566666777777777777777766421 000 0000000000 0122223345555555
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 503 CRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666666666666666666666655566666666666666666666655544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-05 Score=68.07 Aligned_cols=134 Identities=13% Similarity=-0.001 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhH
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISGGA-KPD----DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK----LEH 460 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 460 (619)
+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...++.......-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444455555555555555555443210 011 124455555556666666666666665432111111 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC----CCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPN----ENN-EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE 523 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (619)
+..+...+...|++++|.+.+++... .++ .....++..+...+...|++++|...++++.++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55666677777777777777665441 111 2223456677777888888888888888776554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=4.7e-06 Score=67.26 Aligned_cols=112 Identities=7% Similarity=-0.072 Sum_probs=64.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-Cccc----HHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-N-NEII----VPLYG 497 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~----~~~~~ 497 (619)
.+..+...+...|++++|...|+..... .+.+...+..+..+|...|++++|...+++.... + ..+. ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555555555555543 1223445555556666666666666666554411 0 0111 44577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
.+...+...|++++|...++++.+..| ++.....+..++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777778888888888888888888777 4554555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=63.84 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=69.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCc-ccHHHHHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPK-L---EHYGCLIDLLGRAGLLDEAEELIRKIPN-ENNE-IIVPLYGALLS 501 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~~l~~ 501 (619)
+...+...|++++|...|+.+.+.. |+ . ..+..+..++.+.|++++|...+++... .|+. .....+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4445556677777777777666542 22 2 3566677777777777777777776652 1222 11445777778
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 007077 502 ACRIYGNVDMGEKLAALLEKIESKDSSFHTLLAN 535 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 535 (619)
++...|++++|...++++.+..|+++........
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888888888988888888888887765544443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-06 Score=82.00 Aligned_cols=150 Identities=13% Similarity=-0.015 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
...+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777788888899999999999988876 555432 233444444433221 136788888
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-HhCCChHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY-ASANRWED 545 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 545 (619)
+|.+.|++++|+..+++... -++.+...|..+..++...|++++|+..++++.+++|+++.++..+..+. ...+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLT-EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988763 24445667888999999999999999999999999999998888888773 44567778
Q ss_pred HHHHHHHHHhCC
Q 007077 546 VTNVRQKMKEMG 557 (619)
Q Consensus 546 A~~~~~~m~~~~ 557 (619)
+...+++|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888888886543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=8.2e-06 Score=79.42 Aligned_cols=140 Identities=8% Similarity=-0.032 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ-PKLEHYGCLI 465 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~ 465 (619)
...|..+...+.+.|++++|+..|++.++. .|... .....+.+ . ... .+...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------A---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------G---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------H---HHHHHHHHHHHHHH
Confidence 456888899999999999999999998763 11110 00011111 1 111 2356788899
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 466 DLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
.+|.+.|++++|++.+++.... ++.....|..+..++...|++++|+..++++.++.|++..++..+..++...++.++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988743 455667799999999999999999999999999999999999999999998888887
Q ss_pred HHHH
Q 007077 546 VTNV 549 (619)
Q Consensus 546 A~~~ 549 (619)
+.+.
T Consensus 360 a~k~ 363 (370)
T 1ihg_A 360 KEKA 363 (370)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00064 Score=63.93 Aligned_cols=195 Identities=8% Similarity=-0.057 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCC-hHHHHHHH
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCG--LIEKALEIFYELRE---KDAASWTSIICGLAMNGK-INKALELF 410 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~A~~~~ 410 (619)
++++..++..+.... +-+..+|+.-..++.+.| .+++++.+++++.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777654 556777777666777777 48888888888774 366677777777777787 58899999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----
Q 007077 411 SQMISGGAKPD-DITFIGVLSACSHG--------------GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRA---- 471 (619)
Q Consensus 411 ~~m~~~g~~p~-~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---- 471 (619)
+++++. .|+ ..+|+.....+... +.++++.+.++..... .+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcc
Confidence 998887 444 44555554444333 5678888888888764 244577777666666555
Q ss_pred -------CCHHHHHHHHhhCCCCCCcccHHHHHHHHH---HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 472 -------GLLDEAEELIRKIPNENNEIIVPLYGALLS---ACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 472 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
+.++++++.++++... .|.+...+.+++. +....|..++....+.++.+++|.....|..+...+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~-~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL-EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh-CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578888888887721 2222322322222 112357888999999999999999988787766544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7e-05 Score=77.13 Aligned_cols=170 Identities=11% Similarity=-0.038 Sum_probs=136.9
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 007077 371 LIEKALEIFYELRE---KDAASWTSIICGLAMNGK----------INKALELFSQMISGGAKPD-DITFIGVLSACSHGG 436 (619)
Q Consensus 371 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 436 (619)
..++|++.++++.. .+..+|+.-...+...|+ ++++++.++++.+. .|. ..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34667777777663 355677776666666666 89999999999987 555 457888777888888
Q ss_pred --cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHc-------
Q 007077 437 --LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG-LLDEAEELIRKIPNENNEIIVPLYGALLSACRIY------- 506 (619)
Q Consensus 437 --~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 506 (619)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++++.++++.. .++.+..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-RNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH-HCCCCccHHHHHHHHHHhhccccccc
Confidence 7799999999998752 455778888888888888 89999999999984 4677777888888777663
Q ss_pred -------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 507 -------GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 507 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
+.++++.+.++++...+|++..+|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-06 Score=71.20 Aligned_cols=78 Identities=17% Similarity=0.049 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-chHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS-SFHTLLANI 536 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 536 (619)
...|..+..+|.+.|++++|+..+++... -++.+...|..+..++...|++++|...++++.+++|+++ .+...+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLK-REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 46788889999999999999999988773 2455566799999999999999999999999999999988 544455443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-06 Score=84.38 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=50.4
Q ss_pred HHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 007077 366 YAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 441 (619)
+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++.++. .|+ ..++..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4445555555555554432 23445555555555555555555555555544 332 33444445555555555555
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHH--HHhcCCHHHHHHHHh
Q 007077 442 RRFFNTMTEVYQIQPKLEHYGCLIDL--LGRAGLLDEAEELIR 482 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 482 (619)
.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544431 1112233333333 444455555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.7e-05 Score=61.78 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 390 WTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 390 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
|..+..++...|++++|++.|++.+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334444455555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=81.15 Aligned_cols=64 Identities=9% Similarity=-0.027 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
..+|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999999999999999999999999999999999873
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.8e-06 Score=77.95 Aligned_cols=155 Identities=10% Similarity=-0.048 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHG 435 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 435 (619)
...+..+...+.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788889999999999999998764322211 1223334444433221 13677788888999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHcCCHHHHHH
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA-CRIYGNVDMGEK 514 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 514 (619)
|++++|...++...... +.+...|..+..+|...|++++|.+.|++.... ++.+..++..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-APDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988642 345778889999999999999999999998732 23333345555555 344567788888
Q ss_pred HHHHHhccCCCCcc
Q 007077 515 LAALLEKIESKDSS 528 (619)
Q Consensus 515 ~~~~~~~~~p~~~~ 528 (619)
.|+++.+..|.++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999998887764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-06 Score=67.47 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=62.3
Q ss_pred cCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 435 GGLVDEGRRFFNTMTEVYQ-IQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
.|++++|+..|++..+... -+.+...+..+..+|.+.|++++|++.|++.... ++.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566667777766664200 1222456677777777888888888887776622 3333455777888888888888888
Q ss_pred HHHHHHhccCCCCcchH
Q 007077 514 KLAALLEKIESKDSSFH 530 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~ 530 (619)
..++++.+..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888887643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-07 Score=69.67 Aligned_cols=95 Identities=13% Similarity=-0.022 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD------SSFH 530 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 530 (619)
+...+..+...+.+.|++++|++.|++.... .+.+...|..+..++...|++++|+..++++.++.|++ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4556777888888888888888888877622 33345568888999999999999999999999999998 6667
Q ss_pred HHHHHHHHhCCChHHHHHHHHH
Q 007077 531 TLLANIYASANRWEDVTNVRQK 552 (619)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~ 552 (619)
..++.++...|++++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 7788888877777766655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-05 Score=77.04 Aligned_cols=162 Identities=12% Similarity=0.023 Sum_probs=117.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007077 394 ICGLAMNGKINKALELFSQMISGGAKPD----------------DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK 457 (619)
Q Consensus 394 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 457 (619)
...+.+.|++++|++.|.++.+...... ..++..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445677888888888888877522211 124677889999999999999999998765333333
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----
Q 007077 458 L----EHYGCLIDLLGRAGLLDEAEELIRKIP-----NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIE----- 523 (619)
Q Consensus 458 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 523 (619)
. .+.+.+...+...|++++|.+++++.. .........++..+...+...|++++|..+++.+....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 223344455567899999999887654 12233335568889999999999999999999885432
Q ss_pred -CCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 524 -SKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 524 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
|....++..++.+|...|++++|...+++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345688999999999999999999998764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-05 Score=65.68 Aligned_cols=76 Identities=14% Similarity=-0.073 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC------CCCcccHHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 460 HYGCLIDLLGRAGLLDEAEELIRKIPN------ENNEIIVPLY----GALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 460 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
.|..+..++.+.|++++|+..+++... +-++.....| .....++...|++++|+..|+++.++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 666777777777777777777666552 1134455568 899999999999999999999999999999886
Q ss_pred HHHHHH
Q 007077 530 HTLLAN 535 (619)
Q Consensus 530 ~~~l~~ 535 (619)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 654443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.4e-05 Score=76.00 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=94.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQ--IQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGA 498 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~ 498 (619)
+...|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|+.++++.. ....+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777776654321 1222 4567788888888888888887776543 3445556778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 499 LLSACRIYGNVDMGEKLAALLEK-----IESKDSSF---HTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
|...|...|++++|+.+++++.+ ++|++|.+ ...+..++.+.|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999853 56777654 3577888999999999999999998643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-05 Score=59.64 Aligned_cols=66 Identities=15% Similarity=-0.017 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 490 EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.+...|..+...+...|++++|+..++++.+++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334556888899999999999999999999999999999999999999999999999999998875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=58.95 Aligned_cols=83 Identities=17% Similarity=0.068 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 458 LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 458 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
...+..+...+...|++++|++.+++.... .+.+...|..+...+...|++++|...++++.+++|+++.++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456677777888888888888888776522 2334456888888888999999999999999999999888888888887
Q ss_pred HhCC
Q 007077 538 ASAN 541 (619)
Q Consensus 538 ~~~g 541 (619)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=57.15 Aligned_cols=100 Identities=7% Similarity=-0.106 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCE
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGI 572 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 572 (619)
...|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+......
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------- 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE----------- 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc-----------
Confidence 456888899999999999999999999999999999999999999999999999999999987432110
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccccccCc
Q 007077 573 IHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNAMEGDN 612 (619)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 612 (619)
........+..+...+..+.+........++
T Consensus 73 ---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 ---------HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 0001255666777777777766555444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.4e-05 Score=60.04 Aligned_cols=79 Identities=8% Similarity=-0.086 Sum_probs=60.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 476 EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 476 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|++.|++... .++.+...|..+...+...|++++|+..++++.+.+|+++.+|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLA-QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHT-TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555442 23334556888888888888888888888888888888888888888888888888888888888765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.6e-05 Score=75.91 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=94.3
Q ss_pred HHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---chHH
Q 007077 467 LLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK-----IESKDS---SFHT 531 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 531 (619)
.+...|++++|+.++++.. ....+....+++.|..+|...|++++|+.+++++++ +.|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999988886543 334555677899999999999999999999999853 345555 4578
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcccc
Q 007077 532 LLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQNA 607 (619)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 607 (619)
.|+.+|..+|++++|..++++..+... ... ...||...++..++.+.+.++.+..+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTH-----------------GPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHh-----------------CCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875211 011 1259999999999999887777655443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.2e-05 Score=65.88 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC-----------ChHHHHHHHHHHHhCC
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASAN-----------RWEDVTNVRQKMKEMG 557 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~ 557 (619)
+++|+..|+++++++|++..+|..++.+|...| ++++|++.|++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999998875 8999999999988743
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00025 Score=57.73 Aligned_cols=89 Identities=9% Similarity=-0.082 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 539 (619)
+...|...+..++|.+.|++....+++.. +..|...|.. .+++++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a---~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNG---CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 33344444444444444444433322222 4444444444 45555555555555443 344455556666665
Q ss_pred ----CCChHHHHHHHHHHHhCC
Q 007077 540 ----ANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 540 ----~g~~~~A~~~~~~m~~~~ 557 (619)
.+++++|.+++++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 566666666666655544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00029 Score=52.19 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....|..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34568888889999999999999999999999999999999999999999999999999998763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00039 Score=71.58 Aligned_cols=152 Identities=14% Similarity=-0.008 Sum_probs=125.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 400 NGKINKALELFSQMISGGAKPDDI-TFIGVLSACSHGGL----------VDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 400 ~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
....++|++.+++++.. .|+.. .|+.--.++...|+ ++++.+.++.+.+. -+.+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33456889999999987 77754 56665556666666 89999999999875 245678888888888
Q ss_pred HhcC--CHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhC-----
Q 007077 469 GRAG--LLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG-NVDMGEKLAALLEKIESKDSSFHTLLANIYASA----- 540 (619)
Q Consensus 469 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 540 (619)
.+.| +++++++.++++.. -++.+..+|+.-...+.+.| .++++.+.++++.+.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~-~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLE-ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHcccccHHHHHHHHHHHHh-hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 8999 77999999999984 46667778998888889999 899999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHHHhC
Q 007077 541 ---------NRWEDVTNVRQKMKEM 556 (619)
Q Consensus 541 ---------g~~~~A~~~~~~m~~~ 556 (619)
++++++.+.+++....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhh
Confidence 5678999998888653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00025 Score=52.79 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 490 EIIVPLYGALLSACRIYGN---VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
+.+...+..+..++...++ .++|...++++.+++|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3445558888888765555 79999999999999999999999999999999999999999999987654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=70.85 Aligned_cols=119 Identities=8% Similarity=0.062 Sum_probs=88.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---ch
Q 007077 465 IDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK-----IESKDS---SF 529 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 529 (619)
+..+.+.|++++|++++++.. ....+....+++.+..+|...|++++|+.+++++++ ..|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888776543 233445566789999999999999999999998853 345554 44
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q 007077 530 HTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLL 601 (619)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 601 (619)
+..|+.+|..+|++++|..++++..+--. ... ...||...+++..|.+...+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999875211 111 1259999999999988887775
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00067 Score=55.16 Aligned_cols=112 Identities=12% Similarity=-0.044 Sum_probs=89.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 007077 401 GKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDE 476 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 476 (619)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44443 666777778888899999988764 466778888888887 789999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRI----YGNVDMGEKLAALLEKIES 524 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 524 (619)
|.++|++....+++.. +..|...|.. .+++++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a---~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDG---CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHH---HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHH---HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999998876655444 8888888888 8899999999999877643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=56.26 Aligned_cols=83 Identities=8% Similarity=-0.132 Sum_probs=54.7
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007077 441 GRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLE 520 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (619)
+...|+...+. .+.+...+..+...|...|++++|++.+++.... ++.....|..+..++...|++++|+..++++.
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555532 1234566677777777777777777777766521 23344457777778888888888888888887
Q ss_pred ccCCCC
Q 007077 521 KIESKD 526 (619)
Q Consensus 521 ~~~p~~ 526 (619)
++.|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 777643
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=69.47 Aligned_cols=112 Identities=10% Similarity=0.042 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcC------------CCChhhH-HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELR------------EKDAASW-TSIICGLAMNGKINKALELFSQMISGGAKPDD 422 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 422 (619)
..+-.++-+.|....+++.-..-.+.-. +.+..-+ ..-...|.+++++++++++.++ .++
T Consensus 410 ~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dkl---- 482 (624)
T 3lvg_A 410 KSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSL---- 482 (624)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCC----
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---ccc----
Confidence 3444566666777666654443322221 1122222 2334556777778877766532 122
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 007077 423 ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEEL 480 (619)
Q Consensus 423 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 480 (619)
|.-.+...+.+|+.+-+.++++-.++. -+.+.|.+.+-.|...=+++-++++
T Consensus 483 --ykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 483 --YKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --TTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 222344556778888888888777764 3444555555555555566666665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=6.7e-05 Score=61.51 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHhccCCCCcc
Q 007077 507 GNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
|++++|++.|+++.+++|++..
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHH
Confidence 6899999999999999999876
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0048 Score=58.27 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|..+...+...|++++|...++++..++|. ...|..++.++.-.|++++|.+.+++...
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444455555555555555555542 33345555555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00029 Score=69.45 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHhhC-------CCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---chHHHHHH
Q 007077 471 AGLLDEAEELIRKI-------PNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK-----IESKDS---SFHTLLAN 535 (619)
Q Consensus 471 ~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 535 (619)
.|++++|+.++++. .....+....+++.+..+|...|++++|+.+++++++ +.|+++ ..++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 3344555667899999999999999999999998853 345554 45789999
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 007077 536 IYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 536 ~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.001 Score=50.18 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVP-LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.+..+.+.|++++|++.+++.... ++.+.. .|..+..++...|++++|+..++++.+++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566667777777777665521 233334 466666666777777777777777777777666644
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.15 E-value=2.1e-06 Score=82.11 Aligned_cols=260 Identities=14% Similarity=0.097 Sum_probs=116.7
Q ss_pred hhhHHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhc
Q 007077 123 TYVCNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTA 202 (619)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 202 (619)
+.+|..|..+..+.|++.+|++-|-+ ..|+..|..+|....+.|.+++-+..+...++ ..- ++..=+.++-+|++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCC--STTTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-Hhc--ccccHHHHHHHHHh
Confidence 34566666666666666666554432 24555666666666666666666666655544 221 22222344445555
Q ss_pred CCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCC
Q 007077 203 LKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSP 282 (619)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 282 (619)
.+++.+-.+++ ..|+..-...+.+-+...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++
T Consensus 129 ~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK-- 195 (624)
T 3lvg_A 129 TNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK-- 195 (624)
T ss_dssp SCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT--
T ss_pred hCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh--
Confidence 54443322221 123333334445555555555555555544432 11111111122222221111111
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
..++.+|-.+-.+|...+++.-|.-.--.+. +.||. ...++.-|...|.+++.+.+++.-.... .....+++-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 1244556666666666665555433332222 11111 1123333445555555555544433211 2344555555
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHhCCChHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREK-----------DAASWTSIICGLAMNGKINKAL 407 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~ 407 (619)
.-.|++- ++++-.+.++....+ ....|.-++-.|.+..+++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5555553 333444433332211 3445666666666666666553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0012 Score=49.75 Aligned_cols=89 Identities=7% Similarity=-0.059 Sum_probs=55.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCcccHHHHHHHHHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE-HYGCLIDLLGRAGLLDEAEELIRKIPN-ENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 505 (619)
....+...|++++|...|+.+.+.. +.+.. .+..+..+|...|++++|++.|++... .|..+. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA--LQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HHHH-------
Confidence 3455667778888888888777641 23355 677777777788888888888877652 222222 1211
Q ss_pred cCCHHHHHHHHHHHhccCCCCcc
Q 007077 506 YGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+.+.++...+++....+|+++.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCSS
T ss_pred -HHHHHHHHHHHHHhccCccccc
Confidence 4566666677666666665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0018 Score=49.06 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
...|..+...|...|++++|+..|++.++. .|+ ...|..+..++...|++++|...|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555555555555555555544 232 33445555555555555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0022 Score=51.90 Aligned_cols=90 Identities=9% Similarity=-0.090 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHHHHcCCHHHH
Q 007077 437 LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAG---LLDEAEELIRKIPNENNE-IIVPLYGALLSACRIYGNVDMG 512 (619)
Q Consensus 437 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 512 (619)
....+++-|.+.... + +++..+...+..++++.+ +.++++.+|++......+ .....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445555555555442 2 356666666666666666 455666666665533211 1233444555566666777777
Q ss_pred HHHHHHHhccCCCCcc
Q 007077 513 EKLAALLEKIESKDSS 528 (619)
Q Consensus 513 ~~~~~~~~~~~p~~~~ 528 (619)
++.++.+.+.+|++..
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 7777777777766655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0039 Score=61.40 Aligned_cols=94 Identities=12% Similarity=-0.108 Sum_probs=61.5
Q ss_pred cCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHHHHHH
Q 007077 435 GGLVDEGRRFFNTMTEVY--QIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYGALLS 501 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~ 501 (619)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ....+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355666666665544321 12222 3456667777777777777777666543 3345555667888999
Q ss_pred HHHHcCCHHHHHHHHHHHhc-----cCCCCcc
Q 007077 502 ACRIYGNVDMGEKLAALLEK-----IESKDSS 528 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 528 (619)
.|...|++++|+.+++++.+ ++|++|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 99999999999999988854 4577765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0062 Score=60.11 Aligned_cols=100 Identities=12% Similarity=-0.034 Sum_probs=65.1
Q ss_pred HHhccCcHHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCcccHHHHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVY--QIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIP-------NENNEIIVPLYG 497 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~ 497 (619)
.+...|++++|..++++..+.. -+.|+ ..+++.++..|...|++++|+.+++++. ....+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3444556666666666554321 11222 3456667777777777777777666543 344555666788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcchH
Q 007077 498 ALLSACRIYGNVDMGEKLAALLEK-----IESKDSSFH 530 (619)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 530 (619)
.|...|...|++++|+.+++++.+ ++|++|.+-
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 899999999999999999988853 567777643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0043 Score=47.30 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=57.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 457 KLEHYGCLIDLLGRAGLLDEAEELIRKIPNE------NNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 457 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
+..-+..|+..+.+.|+++.|...|+..... +......++..+..++.+.|+++.|...++++.++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3344556667777777777777777654411 2344566789999999999999999999999999999998865
Q ss_pred HHHH
Q 007077 531 TLLA 534 (619)
Q Consensus 531 ~~l~ 534 (619)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 4443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.025 Score=53.41 Aligned_cols=151 Identities=11% Similarity=-0.009 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH--hCCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---cC-----cH
Q 007077 373 EKALEIFYELREKDAASWTSIICGLA--MNGK---INKALELFSQMISGGAKPDD-ITFIGVLSACSH---GG-----LV 438 (619)
Q Consensus 373 ~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g-----~~ 438 (619)
.++...... ...+..+|...+.+.. ..+. ..+|..+|++.++. .|+. ..+..+..++.. .+ ..
T Consensus 181 ~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 333333333 3457888988887654 3333 47899999999988 8874 455555544431 11 11
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007077 439 DEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAAL 518 (619)
Q Consensus 439 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (619)
......++........+.+...|..+...+...|++++|...++++..-. ++...|..+...+.-.|++++|...+++
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11112222211111335667888888888888899999999999988443 4555577778889999999999999999
Q ss_pred HhccCCCCcc
Q 007077 519 LEKIESKDSS 528 (619)
Q Consensus 519 ~~~~~p~~~~ 528 (619)
+..++|..++
T Consensus 336 AlrL~P~~~t 345 (372)
T 3ly7_A 336 AFNLRPGANT 345 (372)
T ss_dssp HHHHSCSHHH
T ss_pred HHhcCCCcCh
Confidence 9999998875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0078 Score=48.67 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 007077 403 INKALELFSQMISGGAKPDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQP--KLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 403 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 477 (619)
...+.+.|.+....|. ++..+...+..++.+++ +.++++.+++...+. . .| +...+..+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455566666655543 56666666666666666 556777777777664 2 24 245555666677777777777
Q ss_pred HHHHhhCC
Q 007077 478 EELIRKIP 485 (619)
Q Consensus 478 ~~~~~~~~ 485 (619)
.+.++.+.
T Consensus 91 ~~y~~~lL 98 (152)
T 1pc2_A 91 LKYVRGLL 98 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.2 Score=54.30 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHH
Q 007077 228 NALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVA 307 (619)
Q Consensus 228 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (619)
..++..+.+.|..+.|.++.+.- ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 56666777777777777665421 112334566788888888876653 56788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Q 007077 308 LFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFY 380 (619)
Q Consensus 308 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 380 (619)
.|.++.+ |..+...+...++.+....+-+.....|. ++.-..+|.+.|++++|.+++.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 8887743 33444445556666665555544444431 2333444555666666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.012 Score=43.53 Aligned_cols=73 Identities=10% Similarity=-0.079 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 455 QPKLEHYGCLIDLLGRAGL---LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
+++...+..+..++...++ .++|..++++... -++.++..+..+...+...|++++|+..++++.+.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 3456666667776654443 6777777777762 34555555777777788888888888888888888877443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.027 Score=61.25 Aligned_cols=152 Identities=18% Similarity=0.115 Sum_probs=84.7
Q ss_pred HhCCCHHHHHH-HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 367 AKCGLIEKALE-IFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 367 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
...+++++|.+ ++..+. +......++..+.+.|.+++|+++.+. |. .- .......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHHHH
Confidence 34566676666 443332 011225556666677777777665421 11 11 22234567777777764
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007077 446 NTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESK 525 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 525 (619)
+. ..+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++.+.+.....
T Consensus 676 ~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 676 TD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp TT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred Hh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 32 24556778888888888888888888877652 55555555556666655555444433221
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 526 DSSFHTLLANIYASANRWEDVTNVRQKM 553 (619)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 553 (619)
+..-..+|.+.|++++|.+++.++
T Consensus 739 ----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 223333455556666666665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.049 Score=42.27 Aligned_cols=94 Identities=10% Similarity=-0.080 Sum_probs=69.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHhhCCCCCCc-ccHHHHHHHHHHHHHcCCHHH
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE---AEELIRKIPNENNE-IIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 511 (619)
.....+.+-|...... + .|+..+-..+..++.++.+..+ ++.+++.......+ ......-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445556666655543 3 3777788888888998887766 88999988755322 233345566678999999999
Q ss_pred HHHHHHHHhccCCCCcchHH
Q 007077 512 GEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 512 a~~~~~~~~~~~p~~~~~~~ 531 (619)
|++.++.+++.+|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999987543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.31 Score=37.92 Aligned_cols=142 Identities=12% Similarity=0.058 Sum_probs=96.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (619)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+. .| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHH
Confidence 34567788888888877654 12233444443333334444455555554332 22 124566666
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....+-.+-. +... ....++.....|+-+.-.+++..+..-.|.++.+...++.+|.+.|+..+|.+++++.-+.
T Consensus 80 Vi~C~~~~n~--~se~---vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVINNT--LNEH---VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTC--CCHH---HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcc--hHHH---HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6666655542 2222 6667788889999999999999987778888998999999999999999999999999999
Q ss_pred CCcc
Q 007077 557 GVRK 560 (619)
Q Consensus 557 ~~~~ 560 (619)
|++.
T Consensus 155 G~kE 158 (172)
T 1wy6_A 155 GEKE 158 (172)
T ss_dssp TCHH
T ss_pred hhHH
Confidence 8753
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=52.81 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=60.7
Q ss_pred HHHHHHHHhhCC-CCCCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhC-CChHH
Q 007077 474 LDEAEELIRKIP-NENNEIIVPLYGALLSACRI-----YGNVDMGEKLAALLEKIESKD-SSFHTLLANIYASA-NRWED 545 (619)
Q Consensus 474 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 545 (619)
..+|..++++.. ..|.......|..+...|.. -|+.++|++.|++++++.|+. ...+..+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344555555444 12232244456677766766 488888888888888888864 88888888888774 88888
Q ss_pred HHHHHHHHHhCCCcccC
Q 007077 546 VTNVRQKMKEMGVRKVP 562 (619)
Q Consensus 546 A~~~~~~m~~~~~~~~~ 562 (619)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 88888888876655333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.57 Score=38.87 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=74.7
Q ss_pred HHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007077 364 EMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRR 443 (619)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 443 (619)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776665 3566777777777777777777777776532 2333444445566655554
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 444 FFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 444 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
+-+....+ + -++.-...+.-.|+++++.++|.+... |.--+-.....|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 43333322 1 134444555566777777777766542 222222234466666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.64 Score=38.57 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 007077 267 NCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGY 346 (619)
Q Consensus 267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 346 (619)
+.|+++.|.++.+.+ .+...|..+.......|+++-|...|.+..+ +..+.-.|...|+.+....+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344444444444333 3456677777777777777777777766543 33344444555665555544444
Q ss_pred HHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhc
Q 007077 347 INENRITVDAVVATALIEMYAKCGLIEKALEIFYEL 382 (619)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 382 (619)
....| -++.-...+.-.|+++++.++|.+.
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44433 1333344455556666666665543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.043 Score=42.61 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=75.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCcchHHHHHHHHHhCCChHHHHH
Q 007077 474 LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM---GEKLAALLEKIE-S-KDSSFHTLLANIYASANRWEDVTN 548 (619)
Q Consensus 474 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 548 (619)
+..+.+-+.+.... +.++..+--.+.+++.+..+... ++.+++.+...+ | ........|+-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~-~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHH-SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444444433322 33666677788889988887666 888998888776 5 345556788899999999999999
Q ss_pred HHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 549 VRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 549 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
.++.+.+ .+|...++..+..-+.+.+.+.|
T Consensus 96 ~~~~lL~--------------------------~eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 96 YVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp HHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999987 36777777777777777776655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.21 Score=37.67 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIE-------SKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
-...+...+...|++..|...++++.+.. +..+.++..|+.+|.+.|++++|...+++..+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 36788889999999999999999997643 34556789999999999999999999999986
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=1.1 Score=35.00 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=81.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHH
Q 007077 297 VQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKAL 376 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 376 (619)
.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++.+-+. .|. ..||++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3457777777777776553 23444555555444444545444444443221 121 1233333333
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007077 377 EIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQI 454 (619)
Q Consensus 377 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 454 (619)
..+-.+. .+.......++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.++ |+
T Consensus 82 ~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 82 ECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 3332221 24445556677778888888888888885332 3677778888888888888888888888887765 43
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=4.2 Score=41.81 Aligned_cols=117 Identities=10% Similarity=-0.016 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 401 GKINKALELFSQMISGG-AKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
.+.+.|...+......+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998886543 222221 2223333444555455666666665432 34433444455555678999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
...|+.|...... .....--+..+....|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999853221 222223344466788999999999998875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=2.2 Score=38.61 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHh-----CCCHHHHHHHHHhcCC--C--ChhhHHHHHHHHHhC-CCh
Q 007077 337 LEQGKWIHGYINENRITVD---AVVATALIEMYAK-----CGLIEKALEIFYELRE--K--DAASWTSIICGLAMN-GKI 403 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~--~--~~~~~~~l~~~~~~~-g~~ 403 (619)
...|+..+++.++.. |+ ...+..+...|.+ -|+.++|.+.|++..+ | ++.++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 344555555555543 33 4466677777777 3788888888887652 3 366777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHH
Q 007077 404 NKALELFSQMISGGAK--PDDITF 425 (619)
Q Consensus 404 ~~A~~~~~~m~~~g~~--p~~~~~ 425 (619)
+++.+.+++.+..... |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888887655 554433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.11 Score=54.32 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=52.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 499 LLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
-..-|...|+++.|+++.+++....|.+..+|..|+.+|...|+|+.|+-.+..++
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34557789999999999999999999999999999999999999999999999886
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.12 Score=41.09 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=43.0
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
..++.++|.++|+.+... .......|.....--.++|++..|.+++.++.++.|.+..
T Consensus 72 ei~D~d~aR~vy~~a~~~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARAN-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCGGGCHHHHHHHHHH-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HhcCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 346777788877776422 2223666888877788899999999999999998887765
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.97 E-value=3.8 Score=37.76 Aligned_cols=182 Identities=11% Similarity=0.059 Sum_probs=109.3
Q ss_pred HHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHH----
Q 007077 233 MYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVAL---- 308 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---- 308 (619)
.-...|++=+|.+ .|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 22 ~~I~~G~yYEAhQ-----------~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQ-----------TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHH-----------HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 3455678778877 455677788888888888877633 23345566776666554
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCc--H---HHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhCCCHHHHHHHHHh
Q 007077 309 FREMQIIRLKPDKFILVALLTGCAQLGA--L---EQGKWIHGYINENR--ITVDAVVATALIEMYAKCGLIEKALEIFYE 381 (619)
Q Consensus 309 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~---~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 381 (619)
.+-..+.+++++......++..+..... . .-.......-.+.| ...++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4445566888888888888777655321 1 11222222222332 234778888899999999999999988863
Q ss_pred cCCCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007077 382 LREKDAASWTSIICGLAMN---GKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEV 451 (619)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 451 (619)
-...+...+..++.-+... |...++- ...-..++ -|.-.|+...|..+++...+.
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3323455555555444333 3332221 11112222 234567888888888877654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.11 Score=41.30 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=46.2
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 007077 505 IYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRK 560 (619)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 560 (619)
..++.++|.++|+.+..+...-+.+|...+.--.++|+...|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34799999999999987755556677888888889999999999999998866543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.73 Score=35.89 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=31.3
Q ss_pred CChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 456 PKLEHYGCLIDLLGRAGLL---DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
|+..+--.+..++.++.+. .+++.++++............+-.+.-++.+.|++++|++..+.+.+.+|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3344444444444444432 234444444332111112222333444455555555555555555555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.14 E-value=2.6 Score=33.31 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 455 QPKLEHYGCLIDLLGRAGLLD---EAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.|+..+-..+..++.++.+.+ +++.+++..........-...-.|.-++.+.|++++|+++.+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 355555555555555555333 45555555442111112222333444566666666666666666666666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.75 Score=37.48 Aligned_cols=121 Identities=10% Similarity=-0.007 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC---C--CCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHH-
Q 007077 358 VATALIEMYAKCGLIEKALEIFYELR---E--KDA-------ASWTSIICGLAMNGKINKALELFSQMISGG-AKPDDI- 423 (619)
Q Consensus 358 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~--~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~- 423 (619)
.+..-+..+...|.++.|+-+.+.+. + ++. .+...+.+++...|++..|...|++.++.. .-|...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445666777788888877766543 1 221 145556677777888888888887764321 111111
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII 492 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 492 (619)
+...+. ....... .....++.+.-..+..+|.+.|++++|+.+++.++.+.-.|.
T Consensus 102 ~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred cccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 110000 0000000 002233455556688889999999999999998875544444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.38 Score=37.44 Aligned_cols=66 Identities=9% Similarity=-0.040 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 417 GAKPDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQP--KLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 417 g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
+-.|+..|-..+..++.++. +..+++.+++.+.+. + | ....+..|.-++.+.|++++|.+..+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33566655555555555544 445677888777764 2 4 24556667777888888888888888766
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.45 E-value=1.2 Score=35.09 Aligned_cols=65 Identities=8% Similarity=-0.092 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 420 PDDITFIGVLSACSHGG---LVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 420 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|+..+-..+..++.++. +..+++.+++.+.+. .-.-.......|.-++.+.|++++|.++.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44443333333443332 233455555555443 100112333334445555555555555555444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.53 Score=45.58 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCcccCc
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK-----EMGVRKVPG 563 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 563 (619)
...++..+...|+++++...++.+...+|-+...|..++.+|.+.|+..+|++.|+... +.|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556677788999999999999999999999999999999999999999999998875 357777653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.77 E-value=13 Score=36.42 Aligned_cols=225 Identities=10% Similarity=0.087 Sum_probs=133.8
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH----HHhC
Q 007077 299 FNRFDEAVALFREMQII-----RLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM----YAKC 369 (619)
Q Consensus 299 ~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 369 (619)
.|++++|++.+..+.+. +..........++..|...++++...+.+..+.+..-.. ......++.. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788998888766542 234456678888999999999999888777665433222 2222333332 2222
Q ss_pred C--CHHHHHHHHHhcCCC-C---------hhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHH
Q 007077 370 G--LIEKALEIFYELREK-D---------AASWTSIICGLAMNGKINKALELFSQMISG--GAKPDD---ITFIGVLSAC 432 (619)
Q Consensus 370 g--~~~~A~~~~~~~~~~-~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~~~ 432 (619)
. +.+.-..+.+.+... + ......|...|...|++.+|..++..+... |..+.. ..+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 222333444433321 1 122355778888889999999998887642 222221 2556666788
Q ss_pred hccCcHHHHHHHHHHhHHh-cCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 433 SHGGLVDEGRRFFNTMTEV-YQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
...+++.+|..++.++... +...++ ...+..++..+...+++.+|.+. |..+...+...+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~---------------y~e~~~~~~~~~ 252 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY---------------LQEIYQTDAIKS 252 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH---------------HHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH---------------HHHHHhcccccC
Confidence 8888999988888876431 122222 23556667777777888777542 666677777777
Q ss_pred CHHHHHHHHHHHh---ccCCCCcchHHHHHHHHHh
Q 007077 508 NVDMGEKLAALLE---KIESKDSSFHTLLANIYAS 539 (619)
Q Consensus 508 ~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~ 539 (619)
+......++..+. =+.|.++.--..+...+..
T Consensus 253 d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 253 DEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc
Confidence 7766555554442 2345544434445544443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.46 E-value=11 Score=34.96 Aligned_cols=180 Identities=12% Similarity=-0.001 Sum_probs=107.0
Q ss_pred HHHhcCCh---hhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 007077 233 MYCKCGCL---SEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALF 309 (619)
Q Consensus 233 ~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 309 (619)
.-...|++ =+|.+ .|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++-
T Consensus 21 ~~I~~G~y~~~YEAHQ-----------~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQ-----------ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHH-----------HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34567787 67776 455677778888888888877632 233455566666555544
Q ss_pred ----HHHHHcCCCCCHHHHHHHHHHHHccCc--HHHHHHHHHHH----HHcC--CCCChhHHHHHHHHHHhCCCHHHHHH
Q 007077 310 ----REMQIIRLKPDKFILVALLTGCAQLGA--LEQGKWIHGYI----NENR--ITVDAVVATALIEMYAKCGLIEKALE 377 (619)
Q Consensus 310 ----~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 377 (619)
+-..+.++++|..+...++..+..... ++. ..+.+.+ .+.| ...++.....+...|.+.+++.+|..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 445667788888887777777765543 221 2222222 2223 33577788889999999999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 378 IFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
.|-.-.++.+..+..++.-+...+... .++.+.-..++. |.-.++...|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 884322222355555554443333211 112222233333 3445788888887776654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.98 E-value=3.9 Score=29.71 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|.+|... +.|..+++...+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555555555554432 122222223456788999999999999998999999887654 677888888888777776
Q ss_pred CCCCCHHHHHH
Q 007077 417 GAKPDDITFIG 427 (619)
Q Consensus 417 g~~p~~~~~~~ 427 (619)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.89 E-value=24 Score=38.00 Aligned_cols=246 Identities=11% Similarity=0.021 Sum_probs=113.3
Q ss_pred HHHhcCChhhHHHHhccCCCC----Cc--hhHHHHHHHHHhcCCHHHHHHHHccCC-CCC----------hhhHHHHHHH
Q 007077 233 MYCKCGCLSEARELFDEMPNK----NV--ICWTSMVSGYVNCGQLEKARDLFDRSP-VRD----------IVLWTAMING 295 (619)
Q Consensus 233 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~ 295 (619)
+....|+.++++.+++..... +. ..-..+.-+...+|..+++..++.... .++ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345567777777777766541 11 122233344445555455555443321 111 1112223333
Q ss_pred HHHcCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhCC
Q 007077 296 YVQFNR-FDEAVALFREMQIIRLKPDKFILV--ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEM--YAKCG 370 (619)
Q Consensus 296 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g 370 (619)
+.-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+...+..+ +...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 2455666666554221 1111112 22223345566666667766665532 22333333333 33566
Q ss_pred CHHHHHHHHHhcCC-CChhh-HH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007077 371 LIEKALEIFYELRE-KDAAS-WT---SIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 371 ~~~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
+.+.+..+++.+.. .++.. |. ++.-+|+..|+......+++.+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 66666666666542 23222 22 23445667777666666777776541 111112222222333345555555555
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 007077 446 NTMTEVYQIQPKLEHYGCLIDLLGRAGLL-DEAEELIRKIP 485 (619)
Q Consensus 446 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 485 (619)
+.+.. ...|.++.-..+.-+....|.. .+|++.+..+.
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 54443 2244444444444444444443 56666666665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.88 E-value=24 Score=37.99 Aligned_cols=252 Identities=11% Similarity=0.001 Sum_probs=128.5
Q ss_pred HHHhcCCHHHHHHHHccCCCC----Ch--hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 007077 264 GYVNCGQLEKARDLFDRSPVR----DI--VLWTAMINGYVQFNRFDEAVALFREMQIIRL-------KPDKFILVALLTG 330 (619)
Q Consensus 264 ~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~ 330 (619)
+....|+.+++..+++.-... +. ..=..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345677778888888765541 22 2223334445566666678887777654321 0111122222223
Q ss_pred HHccCc-HHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhCCCHHHHHHHHHhcCCC-Chh--hHHHHHHHHHhCCChH
Q 007077 331 CAQLGA-LEQGKWIHGYINENRITVDA--VVATALIEMYAKCGLIEKALEIFYELREK-DAA--SWTSIICGLAMNGKIN 404 (619)
Q Consensus 331 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~l~~~~~~~g~~~ 404 (619)
++-.|. -+++...+..+....- +.. ...-+|...+...|+.+....++..+.+. +.. -..++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333332 2344444444443221 111 12223444455677777777776655432 222 2233444555788888
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 007077 405 KALELFSQMISGGAKPDDI--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIR 482 (619)
Q Consensus 405 ~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 482 (619)
.+..+.+.+.... .|... .-..+..+|+..|+.....++++.+... ...++.....+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888877641 22221 1223445778888888777788887762 23334433334444555676666667776
Q ss_pred hCCCCCCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 007077 483 KIPNENNEIIVPLYGALLSACRIYGNV-DMGEKLAALLE 520 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 520 (619)
.+....+ +.+..-..+.-+....|+. .++...+..+.
T Consensus 619 ~L~~~~d-~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSHN-AHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCSC-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcCC-HHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5553333 3332223333333334433 45566666553
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.64 E-value=3.7 Score=29.82 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007077 337 LEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG 416 (619)
Q Consensus 337 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 416 (619)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|.+|.. .+.|..+++...+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555554432 22222222345678899999999999998899999988765 3788888888888888777
Q ss_pred CCCCCHHHHHH
Q 007077 417 GAKPDDITFIG 427 (619)
Q Consensus 417 g~~p~~~~~~~ 427 (619)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.35 E-value=17 Score=35.60 Aligned_cols=197 Identities=12% Similarity=0.049 Sum_probs=116.7
Q ss_pred cCCHHHHHHHHccCC-----CC----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH----Hc
Q 007077 268 CGQLEKARDLFDRSP-----VR----DIVLWTAMINGYVQFNRFDEAVALFREMQII-RLKPDKFILVALLTGC----AQ 333 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~----~~ 333 (619)
.|+++.|.+.+-.+. .. .......++..|...|+++...+.+.-+.+. |..+.. ...+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 367888877663221 12 3445777888999999999998888766543 333322 23333333 23
Q ss_pred cCcHHH--HHHHHHHHHH--cC-CCC---ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC----C-C----hhhHHHHHHH
Q 007077 334 LGALEQ--GKWIHGYINE--NR-ITV---DAVVATALIEMYAKCGLIEKALEIFYELRE----K-D----AASWTSIICG 396 (619)
Q Consensus 334 ~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~l~~~ 396 (619)
....+. -..+...+.. .| +-. ...+...|...|...|++.+|..++..+.. . + +..+..-+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 333222 1112211110 11 111 123446788999999999999999998762 1 1 4466777888
Q ss_pred HHhCCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 397 LAMNGKINKALELFSQMIS----GGAKPDD--ITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
|...+++..|..++.+... ....|+. ..+...+..+...+++.+|-..| ..+...+..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y----------------~e~~~~~~~ 250 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL----------------QEIYQTDAI 250 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------------HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------HHHHhcccc
Confidence 9999999999999998642 3222322 23444555566667776665543 335556666
Q ss_pred cCCHHHHHHHHh
Q 007077 471 AGLLDEAEELIR 482 (619)
Q Consensus 471 ~g~~~~A~~~~~ 482 (619)
.++.......+.
T Consensus 251 ~~d~~~~~~~L~ 262 (445)
T 4b4t_P 251 KSDEAKWKPVLS 262 (445)
T ss_dssp HSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 676655544443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.06 E-value=0.95 Score=36.89 Aligned_cols=117 Identities=12% Similarity=0.033 Sum_probs=60.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCCccc
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKL-------EHYGCLIDLLGRAGLLDEAEELIRKIPN----ENNEII 492 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 492 (619)
++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+.+++...|++..|...|++... -+..++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555666677777776666655443334442 2445566666667777777766665320 011111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMK 554 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 554 (619)
. ...+. ....... -... +.+......++.+|.+.|++++|+.+++.++
T Consensus 102 ~--~~~~~----~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 V--RPSTG----NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred c--ccccc----ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0 00000 0000000 0011 2233456779999999999999999988764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.79 E-value=2.1 Score=31.32 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
+.-+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+- .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 445667777777778889999999999999999999999999999988753 3444567766643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.35 E-value=4.8 Score=42.27 Aligned_cols=51 Identities=20% Similarity=0.092 Sum_probs=38.5
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
|...|+++.|+.+-++.+.. .|+ ..+|..|+.+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45678888888887777653 344 7788888888888888888888887775
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=26 Score=35.92 Aligned_cols=389 Identities=9% Similarity=-0.058 Sum_probs=203.3
Q ss_pred HHHHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCC
Q 007077 126 CNSIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKN 205 (619)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 205 (619)
-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|......+-..... .+..+..++..+...|.
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHCCC
Confidence 34556667778888888887776 3334444455667777889888888877777552222 33344455555544443
Q ss_pred hHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCC
Q 007077 206 LELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRD 285 (619)
Q Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 285 (619)
+.. ...-.=++.....|+...|..+...+..........++..+.+- ..+....... .++
T Consensus 152 lt~----------------~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~ 211 (618)
T 1qsa_A 152 QDP----------------LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GAT 211 (618)
T ss_dssp SCH----------------HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCC
T ss_pred CCH----------------HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCC
Confidence 322 11122235556677777777777766322211223333333222 2222232222 222
Q ss_pred hh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhH
Q 007077 286 IV---LWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFIL----VALLTGCAQLGALEQGKWIHGYINENRITVDAVV 358 (619)
Q Consensus 286 ~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 358 (619)
.. .+..-+.-+.+ .+.+.|...|....+.. ..+.... ..+.......+...++...+....... .+...
T Consensus 212 ~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 287 (618)
T 1qsa_A 212 DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSL 287 (618)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHH
T ss_pred hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHH
Confidence 21 11112223333 47899999998886543 2233222 222333334452344445555444332 33333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007077 359 ATALIEMYAKCGLIEKALEIFYELREKD---AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHG 435 (619)
Q Consensus 359 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 435 (619)
..-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+.+... . +|..++.+- +.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa~-~L 360 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAAQ-RI 360 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHHH-HT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHHH-Hc
Confidence 4444555567799999999999998642 222333566778899999999999998742 2 344444221 22
Q ss_pred CcHHHHHHHHHHhHHhcCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCH
Q 007077 436 GLVDEGRRFFNTMTEVYQIQPK-LE-----HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNV 509 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 509 (619)
|.... . ......+. .. .-..-+..+...|....|...+.......++.. ...+.......|.+
T Consensus 361 g~~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~---~~~la~~a~~~~~~ 429 (618)
T 1qsa_A 361 GEEYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTE---QAQLARYAFNNQWW 429 (618)
T ss_dssp TCCCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHTTCH
T ss_pred CCCCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCh
Confidence 21000 0 00000110 00 111234557788999999888877654333222 44555556678888
Q ss_pred HHHHHHHHHHhccCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 007077 510 DMGEKLAALLEKIES---KDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 510 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 559 (619)
+.++....+....+. .-|..|..++.-+.+.-.++.++-.---..+++..
T Consensus 430 ~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~ 482 (618)
T 1qsa_A 430 DLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWN 482 (618)
T ss_dssp HHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 888776655433221 11233555565566555555544332223344443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=87.77 E-value=11 Score=38.77 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=28.7
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcC
Q 007077 156 SWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTAL 203 (619)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 203 (619)
..-.+|-.+.|.|.+++|.++.++... .+.--...|...+..++..
T Consensus 154 p~Wa~IyY~LR~G~~~~A~e~~~~~~~--~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIWALIFYLLRAGLIKEALQVLVENKA--NIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHHHHHHHHHTTTCHHHHHHHHHHTGG--GC-----CHHHHHHHC---
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhh--hHhhhhHHHHHHHHHHHhC
Confidence 345678888999999999999987754 1222224666677777643
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.66 E-value=6.4 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 007077 263 SGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFIL 324 (619)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 324 (619)
..+...|++++|..+.+....||...|-++-. .+.|..+++...+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45667888888888888888888888876644 57788888888887777666 4433333
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=87.21 E-value=13 Score=31.72 Aligned_cols=18 Identities=6% Similarity=-0.145 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHhcCCh
Q 007077 223 TPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~ 240 (619)
++.+....+.++.+.|..
T Consensus 94 ~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCcH
Confidence 333334444444444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.19 E-value=6.9 Score=28.47 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 007077 263 SGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIR 316 (619)
Q Consensus 263 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 316 (619)
..+...|++++|..+.+....||...|-++-. .+.|..+++...+.++..+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 45667788888888888888888888876644 56777778877777776665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.88 E-value=7.3 Score=28.51 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 169 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
+.-+..+-++.+.. ..+.|++....+.+++|.+.+++..|..+++-+.........+|..++.
T Consensus 25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 34456666666666 7788999999999999999999999999998888775555556665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.47 E-value=8.2 Score=43.38 Aligned_cols=96 Identities=6% Similarity=-0.059 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC----------------------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNE----------------------NNEIIVPLYGALLSACRIYGNVDMGEKLAALL 519 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (619)
..++.+|...|++++|.+.|++.... ........|..++..+.+.|.++.+.++.+.+
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666666666666666654310 00111234677777888889999999888888
Q ss_pred hccCCCCcc-----hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 520 EKIESKDSS-----FHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 520 ~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
++..+.+.. .|..+.+.+...|++++|...+-.+++..
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 765543322 56778888888899999988887776543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.60 E-value=20 Score=31.98 Aligned_cols=121 Identities=13% Similarity=0.159 Sum_probs=74.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHH
Q 007077 395 CGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLE----HYGCLIDLLG 469 (619)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~ 469 (619)
..+.+.|+.++|++....-++. .|. ...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHH
Confidence 3456788899999988888887 565 445566678888999999999888887753 56533 3333333211
Q ss_pred hcCCHHHHHHHHhh--CCC-CCCcccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 470 RAGLLDEAEELIRK--IPN-ENNEIIVPLYGALLSA--CRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 470 ~~g~~~~A~~~~~~--~~~-~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.. .++|.- .+. -+.++. -...++.+ ....|+.++|..+-.++.+.-|..+.
T Consensus 80 ----~R--~~vfaG~~~P~~~g~~~~--w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ----AR--KDFAQGAATAKVLGENEE--LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HH--HHHTTSCCCEECCCSCHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HH--HHHHcCCCCCCCCCCCHH--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11 123321 111 112222 13344444 34568999999988888887776655
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.46 E-value=5.6 Score=30.88 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
+.-+..+-+..+....+.|++......+.+|.+.+++..|.++|+.++.+ ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 34456666777777888999999999999999999999999999998875 34445567766643
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=82.24 E-value=22 Score=30.21 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=12.1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007077 385 KDAASWTSIICGLAMNGKINKALELFSQMI 414 (619)
Q Consensus 385 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 414 (619)
++...-...+.++.+.+. .++...+.++.
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444444444444443 33444444443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.09 E-value=36 Score=32.51 Aligned_cols=291 Identities=15% Similarity=0.107 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCC--------CCchhHHHHHHHHHhcC-CHHHHHHHHccCCC---CChhhH-----
Q 007077 227 GNALLDMYCKCGCLSEARELFDEMPN--------KNVICWTSMVSGYVNCG-QLEKARDLFDRSPV---RDIVLW----- 289 (619)
Q Consensus 227 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~----- 289 (619)
...|...|.+.|+.++..+++..... +.......+++.+.... ..+.-.++...... .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888877765 12223455555554432 22222222221110 011222
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCcHHHHHHHHHHHHHc--CCCCChhHHHH
Q 007077 290 -TAMINGYVQFNRFDEAVALFREMQIIRLKPDK-----FILVALLTGCAQLGALEQGKWIHGYINEN--RITVDAVVATA 361 (619)
Q Consensus 290 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 361 (619)
.-++..|...|++.+|..++.++.+.--..|. ..+..-+..|...++..++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 24667778888888888888777653212121 12334445556666666666666555332 12223322211
Q ss_pred H----HHHHH-hCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007077 362 L----IEMYA-KCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGG 436 (619)
Q Consensus 362 l----~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 436 (619)
+ ..++. ..+++..|...|-+.. .+|...|.+ .+. +...|..+ .+.....
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~-------------~~lkYlvL-~aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KAL-------------TSLKYMLL-CKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHH-------------HHHHHHHH-HHHHTTC
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHH-------------HHHHHHHH-HHHHcCC
Confidence 1 11223 4445555444443210 111111110 000 11123222 2222222
Q ss_pred cHHHHHHHHH-HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 437 LVDEGRRFFN-TMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN--ENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 437 ~~~~a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
..+-..++. .....+ ..|....+..++.+| ..+++.+..++++.... ..++.....+..+......
T Consensus 236 -r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~-------- 304 (394)
T 3txn_A 236 -SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE-------- 304 (394)
T ss_dssp -GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH--------
T ss_pred -HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--------
Confidence 222222221 211222 345565566666655 45788777777776542 1222221223333322222
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 007077 514 KLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 558 (619)
..+.++ ..|-.......++..+.- ..+++...+-+|...|.
T Consensus 305 ~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 122222 235455556677766543 67899999999987653
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.65 E-value=10 Score=32.07 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 007077 488 NNEIIVPLYGALLSACRIYGNVDMGEKLAALLE--KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRK 560 (619)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 560 (619)
.|+--...|..++..| ..++...+..+|..+. +++-..+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444555555443 2344667777777774 4556667777888888888888888888887776655433
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=81.54 E-value=23 Score=29.85 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCC
Q 007077 222 FTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNR 301 (619)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 301 (619)
++..+....+..+.+.|..+....+.+.+.+++...-...+.++.+.+..+....+.+.+..++...-...+.++.+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444444455555433333444444334443333334444444433333333333333343333333344444333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.07 E-value=33 Score=38.53 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=112.1
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------------------
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK-------------------- 385 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 385 (619)
.++..+...+..+.+.++.... +.++...-.+..+|..+|++++|...|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3555566666666666544332 344555556677888999999999999886421
Q ss_pred ------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007077 386 ------DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDD--I--TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQ 455 (619)
Q Consensus 386 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 455 (619)
-..-|.-++..+.+.+.++.++++-+..++....-+. . .|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--
Confidence 0122566777888889999988888777654211121 1 4677788888899999998887666542 2
Q ss_pred CChhHHHHHHHHHHhcCCHH------------HHHHHHhhCC----CCCCcccHHHHHHHHHHHHHcCCHHHHHHH-HHH
Q 007077 456 PKLEHYGCLIDLLGRAGLLD------------EAEELIRKIP----NENNEIIVPLYGALLSACRIYGNVDMGEKL-AAL 518 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g~~~------------~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~ 518 (619)
--......++..++..|..+ +..+++.... .....|+ .|..|-.-...+||+..|-.+ |+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~--Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPC--WYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTH--HHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCC--HHHHhHhhhhccCChHHHHHHHHHH
Confidence 22445666666666555443 3444442211 0112223 144444445667777665554 666
Q ss_pred Hhcc
Q 007077 519 LEKI 522 (619)
Q Consensus 519 ~~~~ 522 (619)
+.++
T Consensus 1047 ~~RL 1050 (1139)
T 4fhn_B 1047 LSRY 1050 (1139)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.63 E-value=12 Score=36.06 Aligned_cols=69 Identities=7% Similarity=0.033 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTE----VYQIQPKLEH 460 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 460 (619)
..++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566667777777777777766551 23455777777777777777777777776543 3477777554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 619 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.002
Identities = 35/299 (11%), Positives = 80/299 (26%), Gaps = 14/299 (4%)
Query: 265 YVNCGQLEKARDLFDRS----PVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPD 320
G E A + P + + + + + Q R D + I+ P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPL 65
Query: 321 KFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFY 380
+ L + Q H L G +E A++ +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 381 ELREKDAASWTSIICGLAMNGKINKALELFSQMISG-GAKPDDITFIGVLSAC-SHGGLV 438
+ + + + + + E + + +P+ L + G +
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 439 DEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYG 497
+ + P L+ Y L ++L A + D A + + ++G
Sbjct: 186 WLAIHH---FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-ALSLSPNHAVVHG 241
Query: 498 ALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556
L G +D+ +++ + LAN + + +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 619 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.49 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.32 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.88 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.8 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.77 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.72 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.58 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.29 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.32 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.22 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.12 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.79 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.79 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.53 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.63 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.72 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4e-22 Score=196.25 Aligned_cols=373 Identities=14% Similarity=0.098 Sum_probs=288.8
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCCh
Q 007077 161 ISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCL 240 (619)
Q Consensus 161 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (619)
...+.+.|++++|++.|+++.+. .+-+...+..+...+...|+++.|...++.+++..|.++.++..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 34456677888888888777651 2234556666666777778888888888887777777777888888888888888
Q ss_pred hhHHHHhccCCC---CCchhHHHHHHHHHhcCCHHHHHHHHcc---CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007077 241 SEARELFDEMPN---KNVICWTSMVSGYVNCGQLEKARDLFDR---SPVRDIVLWTAMINGYVQFNRFDEAVALFREMQI 314 (619)
Q Consensus 241 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 314 (619)
++|...+....+ .+...+..........+....+...... ...................+....+...+.+...
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 888888777654 2233333344444444444444333322 2233445556666677778888888888887766
Q ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHH
Q 007077 315 IRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWT 391 (619)
Q Consensus 315 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 391 (619)
.. +-+...+..+...+...|+.+.|...+....+.. +.+...+..+...+...|++++|...|++... .+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 43 3345577778888889999999999999888764 55677888999999999999999999987653 4677788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
.+...+.+.|++++|+..|++.++. .|+ ..++..+...+...|++++|.+.++..... .+.+...+..+..++.+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHH
Confidence 8999999999999999999999987 565 568888899999999999999999998774 35667888899999999
Q ss_pred cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 007077 471 AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR 542 (619)
Q Consensus 471 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 542 (619)
.|++++|++.+++... -.+.+..+|..+...+...|++++|+..++++.+++|+++.+|..++.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTT-SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999773 2444566799999999999999999999999999999999999999999998885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.7e-22 Score=194.19 Aligned_cols=372 Identities=14% Similarity=0.076 Sum_probs=306.3
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCC--C-CchhHHHHHHHHHhcCCHHHH
Q 007077 198 SACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPN--K-NVICWTSMVSGYVNCGQLEKA 274 (619)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 274 (619)
..+.+.|+++.|...++.+.+..|.++.++..+..+|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence 4456779999999999999998888999999999999999999999999998865 3 556889999999999999999
Q ss_pred HHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 007077 275 RDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENR 351 (619)
Q Consensus 275 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 351 (619)
...+.... ..+...+..........+....+............. ...............+....+...+.......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC
Confidence 99987654 334455555666666677777777777666554433 33344445555667777778877777776654
Q ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007077 352 ITVDAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGV 428 (619)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 428 (619)
+.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..+++....+ ..+...+..+
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence 55677888899999999999999999997653 467789999999999999999999999998863 3445678888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCC
Q 007077 429 LSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGN 508 (619)
Q Consensus 429 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (619)
...+...|++++|...|++..+. .+.+...+..+...+...|++++|++.++.... ..+.....+..+...+...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc-cCCccchhhhHHHHHHHHCCC
Confidence 89999999999999999998863 234477899999999999999999999988763 244555668899999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHH
Q 007077 509 VDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKE 588 (619)
Q Consensus 509 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (619)
+++|+..++++.++.|+++.++..++.+|.+.|++++|.+.+++..+ .+|+..+
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------l~P~~~~ 374 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTFAD 374 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHH
Confidence 99999999999999999999999999999999999999999999875 3677788
Q ss_pred HHHHHHHHHHHHH
Q 007077 589 IYSMLDRMAKTLL 601 (619)
Q Consensus 589 ~~~~l~~~~~~~~ 601 (619)
++..+.+++.+++
T Consensus 375 a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 375 AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC
Confidence 8888888887654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.6e-14 Score=135.91 Aligned_cols=246 Identities=12% Similarity=-0.065 Sum_probs=167.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007077 290 TAMINGYVQFNRFDEAVALFREMQIIRLKP-DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAK 368 (619)
Q Consensus 290 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (619)
-.....+.+.|++++|+..|+++.+. .| +...+..+..++...|+++.|...+.++.+.. +.+...+..+..+|..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 34566677888888888888888764 34 34566666677777777777777777766653 3445566666666666
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 007077 369 CGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTM 448 (619)
Q Consensus 369 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 448 (619)
.|++++|.+.+++....++.....+.. ..... ...+.......+..+...+...++...+...
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTP--------------AEEGA---GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC--------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHh--------------hhhhh---hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666543221110000000 00000 0000000111122233456677888888887
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 449 TEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 449 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
.....-.++...+..+...+...|++++|+..+++.... .+....+|..+...+...|++++|++.++++.+++|+++.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc-ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 765444455778888999999999999999999987622 3334566999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 529 FHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++..++.+|.+.|++++|.+.+++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.7e-14 Score=135.83 Aligned_cols=268 Identities=13% Similarity=0.017 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 007077 258 WTSMVSGYVNCGQLEKARDLFDRSP---VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQL 334 (619)
Q Consensus 258 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 334 (619)
+-.....+.+.|++++|...|++.. +.+..+|..+..+|...|++++|+..|.+..+.. +-+...+..+...+...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 4456777899999999999998764 4467889999999999999999999999988753 22456788888999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007077 335 GALEQGKWIHGYINENRITVDAV-VATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQM 413 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 413 (619)
|++++|.+.+..+.... |+.. .......... ..+.......+..+...+.+.+|.+.|.+.
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999987753 2211 1110000000 001111111223344556678888888887
Q ss_pred HHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCccc
Q 007077 414 ISGGA-KPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEII 492 (619)
Q Consensus 414 ~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 492 (619)
++... .++..++..+...+...|++++|...|+...... +-+...|..+..+|.+.|++++|++.+++.... ++..
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGY 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHH-hhcc
Confidence 76521 2345677788888999999999999999988642 334778899999999999999999999987732 3344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-----------HHHHHHHHHhCCChHHHH
Q 007077 493 VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF-----------HTLLANIYASANRWEDVT 547 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~ 547 (619)
..+|..+..+|...|++++|+..|++++++.|++... |..+..++...|+.+.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5569999999999999999999999999998887653 345666777777766554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.1e-09 Score=104.57 Aligned_cols=264 Identities=13% Similarity=0.000 Sum_probs=180.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--C---CChhHHHHH
Q 007077 292 MINGYVQFNRFDEAVALFREMQIIRLKPD----KFILVALLTGCAQLGALEQGKWIHGYINENRI--T---VDAVVATAL 362 (619)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l 362 (619)
....+...|++++|+.++++..+.....+ ...+..+..++...|++++|...+....+... . .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556677777777777777665422111 12455566667777777777777776654211 1 112344556
Q ss_pred HHHHHhCCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CCHHHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELRE-------K----DAASWTSIICGLAMNGKINKALELFSQMISGGAK----PDDITFIG 427 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ 427 (619)
...+...|++..|...+..... + ....+..+...+...|+++.+...+......... ....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6777888888888877766432 1 1234556677888999999999999887764222 12335555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CCcccHHHHHHH
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPK-----LEHYGCLIDLLGRAGLLDEAEELIRKIPNE---NNEIIVPLYGAL 499 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l 499 (619)
....+...+....+...+...........+ ...+..+...+...|++++|...+++.... ........+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 666777888898888888776553222222 234566677888999999999999987632 223334456678
Q ss_pred HHHHHHcCCHHHHHHHHHHHh------ccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 500 LSACRIYGNVDMGEKLAALLE------KIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
...+...|++++|...++++. +..|....++..++.+|.+.|++++|.+.+++..+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999999886 34455667789999999999999999999998765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1e-08 Score=95.50 Aligned_cols=191 Identities=10% Similarity=-0.005 Sum_probs=146.2
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCC---C-hhhHHHHHHHHHhCCChHHHHHHH
Q 007077 335 GALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREK---D-AASWTSIICGLAMNGKINKALELF 410 (619)
Q Consensus 335 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~ 410 (619)
+..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+. + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888888887655667778888888999999999999999987542 2 346888888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC
Q 007077 411 SQMISGGAKPDDITFIGVLS-ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPN-EN 488 (619)
Q Consensus 411 ~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 488 (619)
+++++.+.. +...|..... -+...|+.+.|..+|+.+...+ +.+...|...++.+.+.|+++.|..+|++... .+
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999877422 2333433333 2345688999999999988753 45577889999999999999999999998652 22
Q ss_pred Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 489 NEI--IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 489 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
..| ....|...+..-..+|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 222 3456888888888889999999999999888887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.2e-09 Score=99.35 Aligned_cols=221 Identities=11% Similarity=-0.018 Sum_probs=133.6
Q ss_pred hhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHH
Q 007077 302 FDEAVALFREMQIIRL-KP--DKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEI 378 (619)
Q Consensus 302 ~~~A~~~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 378 (619)
.+.++.-+++...... .+ ...++..+..++.+.|++++|...|...++.. |.++.++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555543321 11 11245555666677777777777777777654 55677788888888888888888888
Q ss_pred HHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007077 379 FYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQI 454 (619)
Q Consensus 379 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 454 (619)
|+++.+ .+..+|..+..+|...|++++|+..|++.++. .|+ ......+..++...+..+....+.......
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--- 168 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Confidence 887663 35667888888888888999999988888876 443 333333334445555555555555444432
Q ss_pred CCChhHHHHHHHHHHhcCC----HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 455 QPKLEHYGCLIDLLGRAGL----LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 455 ~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.++...+. ++..+..... .+.+...+.... .-.+....+|..+...+...|++++|...|+++...+|++...|
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT-SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 22222222 2233322222 222222222111 01122234577788889999999999999999999999886544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=4.9e-09 Score=100.00 Aligned_cols=262 Identities=7% Similarity=-0.046 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHH----cCCCCC---
Q 007077 288 LWTAMINGYVQFNRFDEAVALFREMQIIRL-KPD----KFILVALLTGCAQLGALEQGKWIHGYINE----NRITVD--- 355 (619)
Q Consensus 288 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--- 355 (619)
.++.+...|...|++++|+..|++..+... .++ ...+..+...+...|++..+...+..... .+....
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 456666777777777777777777654211 111 12445555666777777777777766543 111111
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--
Q 007077 356 AVVATALIEMYAKCGLIEKALEIFYELREK--------DAASWTSIICGLAMNGKINKALELFSQMISG----GAKPD-- 421 (619)
Q Consensus 356 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-- 421 (619)
...+..+...+...|+++.+...+...... ...++..+...+...+++..+...+.+.... +..+.
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 234455677788888888888888765421 2344555667777888888888888775542 11111
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCcccHH
Q 007077 422 DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK--LEHYGCLIDLLGRAGLLDEAEELIRKIP-----NENNEIIVP 494 (619)
Q Consensus 422 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 494 (619)
...+......+...|+++.|...++.......-.+. ...+..+...+...|++++|...+++.. ....+....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 124455556777889999999998876543111111 3455667888999999999999998764 122233445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---------chHHHHHHHHHhCCChHHHHHH
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDS---------SFHTLLANIYASANRWEDVTNV 549 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~ 549 (619)
++..+...+...|++++|.+.++++.++.+... .....+...+...++.+++.+-
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 678888899999999999999999877654321 1233455556677777777553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=7.3e-10 Score=100.70 Aligned_cols=212 Identities=13% Similarity=-0.009 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHH
Q 007077 338 EQGKWIHGYINENRITV---DAVVATALIEMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFS 411 (619)
Q Consensus 338 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~ 411 (619)
+.+..-+.++....... ...++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 44444455554432111 234677788999999999999999998763 478899999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-CC
Q 007077 412 QMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNE-NN 489 (619)
Q Consensus 412 ~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 489 (619)
+.++. .|+ ..++..+..++...|++++|...|+...+.. +.+......+...+.+.+..+.+..+....... +.
T Consensus 96 ~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 96 SVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 99987 565 5578888899999999999999999998752 334444444555556666555554444433311 22
Q ss_pred cccHHHHHHHHHHH----HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 490 EIIVPLYGALLSAC----RIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 490 ~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
.+. +.. +..+ ...+..+.+...+.......|....+|..++.+|...|++++|.+.+++.....
T Consensus 172 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QWG---WNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp STH---HHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhh---hhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222 222 1111 122234444444444455667777788899999999999999999999988644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.8e-10 Score=109.25 Aligned_cols=233 Identities=7% Similarity=-0.076 Sum_probs=169.4
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--cHHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhCCCHH
Q 007077 297 VQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLG--ALEQGKWIHGYINENRITVDAVVA-TALIEMYAKCGLIE 373 (619)
Q Consensus 297 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 373 (619)
...|++++|+..++...+.. +-+...+..+..++...+ +.+.+...+..+.+.. +++...+ ......+...+..+
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 34455778888888877643 223445555555555544 5788888888887764 3445544 34556778889999
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007077 374 KALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTE 450 (619)
Q Consensus 374 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 450 (619)
+|+..++.+.+. +..+|+.+...+...|++++|...+++.... .|+.. .....+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999988754 6778888999999999988887666554433 23222 222334445666677777777665
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 007077 451 VYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFH 530 (619)
Q Consensus 451 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 530 (619)
.-+++...+..++..+...|+.++|.+.+.+... .++.+..+|..++..+...|++++|.+.++++.+++|.+...|
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 3345566667778888888999999999998883 4666777789999999999999999999999999999999888
Q ss_pred HHHHHHHHh
Q 007077 531 TLLANIYAS 539 (619)
Q Consensus 531 ~~l~~~~~~ 539 (619)
..|...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888877663
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=6.2e-09 Score=97.04 Aligned_cols=27 Identities=7% Similarity=0.284 Sum_probs=10.9
Q ss_pred HHHHHHHHHHH-hccCCCCcchHHHHHH
Q 007077 509 VDMGEKLAALL-EKIESKDSSFHTLLAN 535 (619)
Q Consensus 509 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~ 535 (619)
+++|..+++.. .+.+|-....|..++.
T Consensus 280 ~~ka~~l~~~l~~~~DpiR~~yw~~~~~ 307 (315)
T d2h6fa1 280 LNKALELCEILAKEKDTIRKEYWRYIGR 307 (315)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444444432 2344444343444433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.1e-09 Score=102.39 Aligned_cols=225 Identities=8% Similarity=0.017 Sum_probs=133.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCC-CHHHHHHHHHhcC---CCChhhHHHHHHHHH
Q 007077 323 ILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCG-LIEKALEIFYELR---EKDAASWTSIICGLA 398 (619)
Q Consensus 323 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 398 (619)
.++.+...+.+.+..++|.+.++.+++.. |.+...|+....++...| ++++|+..+++.. ..+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45555556666677777777777777764 555666676666666655 3677777777654 235667777777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC----
Q 007077 399 MNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL---- 473 (619)
Q Consensus 399 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 473 (619)
..|++++|++.++++++. .|+ ...|..+...+...|++++|...++.+++.. +.+...|+.+..++.+.|.
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHHHHHHHccccchh
Confidence 777777777777777765 444 4566667777777777777777777776531 2235566666555555443
Q ss_pred --HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc--chHHHHHHHHHhC--CChHHHH
Q 007077 474 --LDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDS--SFHTLLANIYASA--NRWEDVT 547 (619)
Q Consensus 474 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~A~ 547 (619)
+++|++.+.++.. -.+.+...|..+...+.. ...+++...++.+.++.|+.. ..+..++.+|... +..+.+.
T Consensus 200 ~~~~~ai~~~~~al~-~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK-LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhHHhHHHHHHHHH-hCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4566666655541 122333345555444433 334566666666666665533 2334445554332 4444555
Q ss_pred HHHHHHH
Q 007077 548 NVRQKMK 554 (619)
Q Consensus 548 ~~~~~m~ 554 (619)
..+++..
T Consensus 278 ~~~~ka~ 284 (315)
T d2h6fa1 278 DILNKAL 284 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=1e-07 Score=88.48 Aligned_cols=228 Identities=12% Similarity=0.065 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccC----C
Q 007077 207 ELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRS----P 282 (619)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 282 (619)
+.+..+++.++..+|.++.+|...+..+.+.|....... ......+..++|..+|++. .
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~a~~i~~ral~~~~ 95 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG-----------------DMNNAKLFSDEAANIYERAISTLL 95 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS-----------------CCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHH-----------------HHhhcccchHHHHHHHHHHHHHcC
Confidence 345567777777777777777665554433322110000 0000112233444444432 2
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 283 VRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
+.+...|...+..+.+.|+++.|..+|+++.+.........+...+..+.+.|+.+.|++++..+.+.. +.+...+...
T Consensus 96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~ 174 (308)
T d2onda1 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 174 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 335556777777777778888888888777654333334456666777777777777777777776654 3333334333
Q ss_pred HHH-HHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcc
Q 007077 363 IEM-YAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGG-AKPD--DITFIGVLSACSHG 435 (619)
Q Consensus 363 ~~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~ 435 (619)
... +...|+.+.|..+|+.+.+ .++..|...+..+...|+++.|..+|++.+... ..|+ ...|...+.--...
T Consensus 175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~ 254 (308)
T d2onda1 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence 332 2334666666666666553 245566666666666667777777777666542 2332 23455555544555
Q ss_pred CcHHHHHHHHHHhHHhc
Q 007077 436 GLVDEGRRFFNTMTEVY 452 (619)
Q Consensus 436 g~~~~a~~~~~~~~~~~ 452 (619)
|+.+.+..+++++.+.+
T Consensus 255 G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 255 GDLASILKVEKRRFTAF 271 (308)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 66666666666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=2e-09 Score=101.88 Aligned_cols=228 Identities=5% Similarity=-0.086 Sum_probs=149.2
Q ss_pred CHHHHHHHHccCC---CCChhhHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCcHHHHHHH
Q 007077 270 QLEKARDLFDRSP---VRDIVLWTAMINGYVQFN--RFDEAVALFREMQIIRLKPDKFIL-VALLTGCAQLGALEQGKWI 343 (619)
Q Consensus 270 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~ 343 (619)
.+++|+..++... +.+...|..+..++...+ ++++|+..++++.... +++...+ ......+...+..+.|...
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 3444444544432 445666777766666655 4678888888877753 2233333 3444566677888888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 007077 344 HGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDI 423 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 423 (619)
++.+++.. +.+...|+.+..++.+.|++++|...+....+..+... .....+...+..+++...+....... +++..
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~ 243 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLF 243 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSS
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchhh
Confidence 88777765 55677888888888888888777655544433222222 23334556677778888888877762 23344
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 007077 424 TFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSA 502 (619)
Q Consensus 424 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (619)
++..+...+...|+.++|...+..... ..| +...+..++.+|.+.|++++|.+.++++.. -+|.....|..+...
T Consensus 244 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~-ldP~~~~y~~~L~~~ 319 (334)
T d1dcea1 244 RCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-VDPMRAAYLDDLRSK 319 (334)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH-HCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCcccHHHHHHHHHH
Confidence 555666677777888888888887664 234 356778888899999999999999998873 244455567777655
Q ss_pred HHH
Q 007077 503 CRI 505 (619)
Q Consensus 503 ~~~ 505 (619)
+..
T Consensus 320 ~~~ 322 (334)
T d1dcea1 320 FLL 322 (334)
T ss_dssp HHH
T ss_pred HhH
Confidence 543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.9e-08 Score=76.86 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=67.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCCh
Q 007077 464 LIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRW 543 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 543 (619)
-...+.+.|++++|+..|++... -+|.+...|..+..++...|++++|+..++++.+++|+++.+|..++.+|...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK-LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34556677777777777777662 24444556777777777888888888888888888888888788888888888888
Q ss_pred HHHHHHHHHHHh
Q 007077 544 EDVTNVRQKMKE 555 (619)
Q Consensus 544 ~~A~~~~~~m~~ 555 (619)
++|+..+++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=3.8e-08 Score=85.03 Aligned_cols=116 Identities=8% Similarity=-0.195 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHH
Q 007077 420 PDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGAL 499 (619)
Q Consensus 420 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 499 (619)
|+...+......+.+.|++++|+..|+..+.. -+.+...|..+..+|.+.|++++|+..|+++.. -++....+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH-hCCCcHHHHHHH
Confidence 55555556666666667777777776666653 123355566666666666666666666666652 233344456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 500 LSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 500 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
..++...|++++|+..++++.++.|++...+...+..+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l 117 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 666666666666666666666666655544444443333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1e-07 Score=73.73 Aligned_cols=107 Identities=12% Similarity=0.010 Sum_probs=88.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
-...+...|++++|...|+..++. -+.+...|..+..+|.+.|++++|++.+++... -++.+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHH-hccchhhHHHHHHHHHHHcc
Confidence 355677888999999999988864 244577888899999999999999999988873 24455666999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANIY 537 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 537 (619)
++++|+..++++.+++|+++.++..+.++-
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 999999999999999999999887777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2e-07 Score=76.81 Aligned_cols=90 Identities=10% Similarity=-0.097 Sum_probs=60.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWE 544 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 544 (619)
...|.+.|++++|+..|++.... ++.+...|..+...|...|++++|+..++++++++|.+..+|..++.+|...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc-chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 44566667777777777666522 33445556667777777777777777777777777777776777777777777777
Q ss_pred HHHHHHHHHHh
Q 007077 545 DVTNVRQKMKE 555 (619)
Q Consensus 545 ~A~~~~~~m~~ 555 (619)
+|.+.+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=9.7e-07 Score=74.92 Aligned_cols=143 Identities=10% Similarity=0.011 Sum_probs=94.7
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEG 441 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 441 (619)
...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 445677788888888888887778888888888888888888888888888776 454 45777777778888888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 442 RRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 442 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
...|++.... .+++... .|...| ..-......++..+..++...|++++|.+.++++.+
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8887776642 1111100 000000 000011123455666777888888888888888887
Q ss_pred cCCCCcc
Q 007077 522 IESKDSS 528 (619)
Q Consensus 522 ~~p~~~~ 528 (619)
+.|....
T Consensus 149 ~~~~~~~ 155 (192)
T d1hh8a_ 149 MKSEPRH 155 (192)
T ss_dssp TCCSGGG
T ss_pred cCCCcch
Confidence 7776544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.61 E-value=4.8e-08 Score=74.88 Aligned_cols=91 Identities=10% Similarity=-0.085 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASAN 541 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 541 (619)
..+...+.+.|++++|+..|++.... ++.+..+|..+..++.+.|++++|+..++++.+++|+++.++..++.+|...|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccc-ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 34677888999999999999998732 44566779999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHH
Q 007077 542 RWEDVTNVRQKM 553 (619)
Q Consensus 542 ~~~~A~~~~~~m 553 (619)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=4.7e-07 Score=83.03 Aligned_cols=193 Identities=8% Similarity=-0.023 Sum_probs=128.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HHHHH
Q 007077 361 ALIEMYAKCGLIEKALEIFYELRE-----KD----AASWTSIICGLAMNGKINKALELFSQMISGGA---KPD--DITFI 426 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~ 426 (619)
.....|...|++++|.+.|.++.+ .+ ..+|..+..+|.+.|++++|++.+++..+.-. .+. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345668888888888888877653 12 35788888999999999999999987654210 111 23556
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--CCc---cc-HHH
Q 007077 427 GVLSACS-HGGLVDEGRRFFNTMTEVYQIQPK----LEHYGCLIDLLGRAGLLDEAEELIRKIPNE--NNE---II-VPL 495 (619)
Q Consensus 427 ~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~ 495 (619)
.+...|. ..|++++|.+.++...+......+ ..++..++..|...|++++|++.++++... ..+ .. ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 469999999999987653221222 345788899999999999999999875511 111 11 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHHh--CCChHHHHHHHHHH
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKDSSF-----HTLLANIYAS--ANRWEDVTNVRQKM 553 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~m 553 (619)
+...+..+...|+++.|.+.++++.+++|..+.. ...++.++.. .+++++|+..++++
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445556778899999999999999999864432 3445556554 35688888777543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.2e-07 Score=78.03 Aligned_cols=121 Identities=12% Similarity=-0.002 Sum_probs=87.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHH
Q 007077 431 ACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVD 510 (619)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 510 (619)
.+...|+++.|.+.|..+ .+|+...|..+..+|...|++++|++.|++... -++.....|..+..++.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~-ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH-HhhhhhhhHHHHHHHHHhhccHH
Confidence 445667777777777653 245666777777777778888888877777762 24445556777888888888888
Q ss_pred HHHHHHHHHhccCCCCc----------------chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 007077 511 MGEKLAALLEKIESKDS----------------SFHTLLANIYASANRWEDVTNVRQKMKEMG 557 (619)
Q Consensus 511 ~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 557 (619)
+|+..|+++....|.+. .++..++.+|.+.|++++|.+.+++.....
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888776555443 235678999999999999999999887643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=1.6e-07 Score=81.01 Aligned_cols=95 Identities=11% Similarity=-0.009 Sum_probs=65.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHH
Q 007077 386 DAASWTSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGC 463 (619)
Q Consensus 386 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 463 (619)
+...+......|.+.|++++|+..|++.++. .|+ ..+|..+..+|.+.|++++|...|+..+ .+.|+ ...|..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 3444555667777777777777777777765 444 4566677777777777777777777766 33454 566777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC
Q 007077 464 LIDLLGRAGLLDEAEELIRKIP 485 (619)
Q Consensus 464 l~~~~~~~g~~~~A~~~~~~~~ 485 (619)
++.+|.+.|++++|+..|+++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777777777777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3e-07 Score=75.61 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=95.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC
Q 007077 428 VLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG 507 (619)
Q Consensus 428 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (619)
....|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|+++.. -++.+..+|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~-~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHH-HcccchHHHHHHHHHHHHcC
Confidence 3556778899999999999888752 34577888899999999999999999998873 24555667999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHH--HhCCChHHHHHH
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANIY--ASANRWEDVTNV 549 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 549 (619)
++++|...++++..+.|+++.++..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999887776653 344556666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=5.8e-07 Score=69.49 Aligned_cols=109 Identities=11% Similarity=-0.076 Sum_probs=86.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCcc-cHHHHHHHHH
Q 007077 426 IGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGL---LDEAEELIRKIPNENNEI-IVPLYGALLS 501 (619)
Q Consensus 426 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 501 (619)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++ +++|+++++++......+ ...+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677788889999999999998874 24557888889999987554 456999999987543223 2346888999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 007077 502 ACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANI 536 (619)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 536 (619)
+|.+.|++++|++.++++.+++|++..+......+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999999866655544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=4.6e-07 Score=75.32 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4666777788888888888888888888888888888888888888888888888888776
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=1.3e-06 Score=80.00 Aligned_cols=175 Identities=10% Similarity=0.022 Sum_probs=132.4
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 007077 371 LIEKALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISG----GAKPD-DITFIGVLSACSHGGLVDEGRRFF 445 (619)
Q Consensus 371 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 445 (619)
++++|.++|.+ ....|...|++++|.+.|.+..+. +-.|+ ..+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46777776554 577899999999999999997653 22232 247888899999999999999999
Q ss_pred HHhHHhcCCCCC----hhHHHHHHHHHHh-cCCHHHHHHHHhhCC----CCCCcc-cHHHHHHHHHHHHHcCCHHHHHHH
Q 007077 446 NTMTEVYQIQPK----LEHYGCLIDLLGR-AGLLDEAEELIRKIP----NENNEI-IVPLYGALLSACRIYGNVDMGEKL 515 (619)
Q Consensus 446 ~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 515 (619)
+.....+.-..+ ...+..+...|.. .|++++|++.+++.. ..+.++ ...++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987654322222 3456667777755 699999999998764 112222 344678889999999999999999
Q ss_pred HHHHhccCCCCcc-------hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 516 AALLEKIESKDSS-------FHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 516 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
++++....|.++. .+...+.++...|+++.|.+.+++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999988887653 2456677788899999999999988764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.45 E-value=1.7e-06 Score=70.30 Aligned_cols=85 Identities=11% Similarity=-0.008 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEE
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGII 573 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 573 (619)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------ 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 35777888999999999999999999999999999999999999999999999999999876
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHHHhc
Q 007077 574 HEFLVGDPSHSEMKEIYSMLDRMAKTLLDSK 604 (619)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 604 (619)
.+|...++...+..+..++++..
T Consensus 130 --------l~P~n~~~~~~l~~~~~kl~~~~ 152 (153)
T d2fbna1 130 --------LNPNNLDIRNSYELCVNKLKEAR 152 (153)
T ss_dssp --------HSTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHHHC
Confidence 25677777888888888777654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.4e-06 Score=72.32 Aligned_cols=135 Identities=12% Similarity=-0.050 Sum_probs=97.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 007077 389 SWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLL 468 (619)
Q Consensus 389 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 468 (619)
.+......+.+.|++++|+..|++.+.. .|.... ....-......+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 4455566777888888888888877653 111100 0000001111111 23577788999
Q ss_pred HhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHH
Q 007077 469 GRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDV 546 (619)
Q Consensus 469 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 546 (619)
.+.|++++|+..+++... -+|.++.+|..+..++...|++++|+..|+++.+++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALE-LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhh-ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998873 24556677999999999999999999999999999999999999998887776665544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3e-07 Score=71.18 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCc--chHHHHHHH
Q 007077 462 GCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYG---NVDMGEKLAALLEKIESKDS--SFHTLLANI 536 (619)
Q Consensus 462 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~ 536 (619)
..++..+...+++++|.+.|++... -++.+..++..+..++.+.+ ++++|+.+++++...+|.+. .++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~-~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA-AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4577788899999999999999883 35556667888988887654 55679999999999887654 478899999
Q ss_pred HHhCCChHHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 007077 537 YASANRWEDVTNVRQKMKEMGVRKVPGCSSIEINGIIHEFLVGDPSHSEMKEIYSMLDRMAKTLLD 602 (619)
Q Consensus 537 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 602 (619)
|.+.|++++|.+.++++.+ .+|+..+.......+...+++
T Consensus 82 y~~~g~~~~A~~~~~~aL~--------------------------~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--------------------------hCcCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999987 256667777777777766654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=8e-07 Score=73.86 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcccCceeEEEECC
Q 007077 492 IVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEMGVRKVPGCSSIEING 571 (619)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 571 (619)
....|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 44457788888999999999999999999999999999999999999999999999999998872
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHHHHhcc
Q 007077 572 IIHEFLVGDPSHSEMKEIYSMLDRMAKTLLDSKQ 605 (619)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 605 (619)
.|+..++...+..+...+++..+
T Consensus 141 -----------~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 141 -----------APEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888877766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=4.3e-05 Score=68.41 Aligned_cols=228 Identities=11% Similarity=-0.057 Sum_probs=134.0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCChhHHH
Q 007077 285 DIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ----LGALEQGKWIHGYINENRITVDAVVAT 360 (619)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 360 (619)
|+..+..+...+.+.+++++|++.|++..+.| +...+..|...+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34556666666777777777777777776655 23333333333332 234444444444433332
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--Hhc
Q 007077 361 ALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAM----NGKINKALELFSQMISGGAKPDDITFIGVLSA--CSH 434 (619)
Q Consensus 361 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~ 434 (619)
+...+..+...+.. ..+.+.|...++...+.|..+... ....... ...
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~-~l~~~~~~~~~~ 122 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCA-SLGGIYHDGKVV 122 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHCSSS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHH-hhcccccCCCcc
Confidence 23333333333322 445667777777777665322211 1111111 123
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH----c
Q 007077 435 GGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR----AGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI----Y 506 (619)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 506 (619)
......+...+..... ..+...+..+...|.. ..+...+...++.....+++.. ...+...+.. .
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A---~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPG---CFNAGNMYHHGEGAT 195 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTCSSC
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhcccccccccc---ccchhhhcccCcccc
Confidence 4455666666665544 2455666677777764 4567777777777664444433 5556655554 5
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCCc
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMGVR 559 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 559 (619)
.++++|+..|+++.+.+ ++.++..|+.+|.+ ..++++|.+++++..+.|-.
T Consensus 196 ~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 196 KNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 68999999999987764 56678889998886 34799999999999877643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.32 E-value=1.6e-06 Score=71.85 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 495 LYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+|+.+..+|.+.|++++|+..++++.+++|++..+|..++.+|...|++++|.+.++++..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556667777888888888888888888888888888888888888888888888887765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.7e-06 Score=66.61 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-------HHHH
Q 007077 461 YGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF-------HTLL 533 (619)
Q Consensus 461 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l 533 (619)
+..+...|.+.|++++|++.|++.... ++.+...|..+..+|.+.|++++|+..++++++++|+++.. |..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 445777888999999999999887732 44456679999999999999999999999999999887754 4556
Q ss_pred HHHHHhCCChHHHHHHHHHHHh
Q 007077 534 ANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+.++...+++++|++.+++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 6777888899999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.27 E-value=6.2e-06 Score=68.09 Aligned_cols=144 Identities=10% Similarity=-0.056 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 007077 388 ASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDL 467 (619)
Q Consensus 388 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 467 (619)
..+......+.+.|++++|+..|++.+.. .|.. .....+. ....+.+. ...|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~-----------~~~~~~~-~~~~~~~~--------~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEME-----------YGLSEKE-SKASESFL--------LAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTC-----------CSCCHHH-HHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-----------hccchhh-hhhcchhH--------HHHHHhHHHH
Confidence 44555667777788888888887775532 0000 0000000 01111111 2356778889
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH-H
Q 007077 468 LGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED-V 546 (619)
Q Consensus 468 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A 546 (619)
|.+.|++++|+..+++... -++.+..+|..+..++...|++++|+..|+++.+++|+++.+...+..+....+...+ .
T Consensus 74 ~~~l~~~~~Ai~~~~~al~-l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALG-LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhh-cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999998873 3556667799999999999999999999999999999999998888888777665543 4
Q ss_pred HHHHHHHH
Q 007077 547 TNVRQKMK 554 (619)
Q Consensus 547 ~~~~~~m~ 554 (619)
.+.+.+|-
T Consensus 153 kk~~~~~f 160 (168)
T d1kt1a1 153 RRTYANMF 160 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=6e-06 Score=68.31 Aligned_cols=132 Identities=9% Similarity=-0.009 Sum_probs=94.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLG 469 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 469 (619)
......+...|++++|+..|.++++. .+. ........... .+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADGA----------KLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHHG----------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHHH----------HhChhhHHHHHHHHHHHH
Confidence 34556677888888888888876642 100 00000000000 1112 3456778899999
Q ss_pred hcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHH
Q 007077 470 RAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWED 545 (619)
Q Consensus 470 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 545 (619)
+.|++++|+..++++.. -++....+|..+..++...|++++|+..|+++.+++|+++.++..+..+..+.....+
T Consensus 89 ~~~~~~~Ai~~~~~al~-~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALE-IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhh-hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999884 3566777899999999999999999999999999999999988888877655444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.0011 Score=60.17 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=50.2
Q ss_pred CChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHh
Q 007077 188 PDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVN 267 (619)
Q Consensus 188 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 267 (619)
|+..-...+...|.+.|.++.|..++..+.. +..++..|.+.++++.|.+.+.+. .+..+|..+...+.+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 4444444455555555555555555543222 344455555555555555554433 233344444544444
Q ss_pred cCCHHHHHHHHccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 007077 268 CGQLEKARDLFDRSPVRDIVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQ 333 (619)
Q Consensus 268 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 333 (619)
.....-|.-. ......+......++..|-..|.+++.+.++...... -.++...++.++..+++
T Consensus 82 ~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 82 GKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp TTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred CcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 4443333211 1111112222334444555555555555555543321 12333344444444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4e-07 Score=90.41 Aligned_cols=147 Identities=9% Similarity=-0.054 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 007077 403 INKALELFSQMISGGAKPDDITFIGVLSAC--SHGGLVDEGRRFFNTMTEVYQIQP-KLEHYGCLIDLLGRAGLLDEAEE 479 (619)
Q Consensus 403 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 479 (619)
+..+.+.++...+....++..-....+..+ ...+.++.+...++... ++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 345566666665543334332222211111 22344444444443332 3333 35566677777778888888777
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 480 LIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
.+.+... .+ ...++..+...+...|++++|+..|+++.++.|+++..|..|+.+|...|+..+|...+.+...
T Consensus 142 ~~~~al~-~~--~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 142 PQSSSCS-YI--CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp -CCHHHH-HH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHhC-CC--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6655431 11 1234667777888888888888888888888888888888888888888888888888887765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=1.2e-05 Score=64.95 Aligned_cols=130 Identities=8% Similarity=-0.097 Sum_probs=94.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 387 AASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 387 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
...+......+.+.|++.+|+..|++.+.. .|... ............. ....+|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 345666777888899999999999888764 11100 0000000000000 12346778999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 007077 467 LLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYA 538 (619)
Q Consensus 467 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 538 (619)
+|.+.|++++|++.++++.. -+|.+..+|..++.++...|++++|+..|+++.+++|+++.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~-~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLK-IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcccc-ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999873 356677789999999999999999999999999999999998777766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=0.00082 Score=59.68 Aligned_cols=95 Identities=6% Similarity=-0.062 Sum_probs=66.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHccCC-CCChhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007077 254 NVICWTSMVSGYVNCGQLEKARDLFDRSP-VRDIVLWTAMINGYVQ----FNRFDEAVALFREMQIIRLKPDKFILVALL 328 (619)
Q Consensus 254 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 328 (619)
|+..+..|...+.+.+++++|.+.|++.. ..+..++..|...|.. ..+...|...+......+. | .....+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhccc
Confidence 34567778888889999999999998765 3467777778887776 5688899999988877652 2 2222332
Q ss_pred HHHH----ccCcHHHHHHHHHHHHHcC
Q 007077 329 TGCA----QLGALEQGKWIHGYINENR 351 (619)
Q Consensus 329 ~~~~----~~~~~~~a~~~~~~~~~~~ 351 (619)
..+. ...+.+.+...++...+.|
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccchhhHHHHHHHhhhhhhh
Confidence 2222 2456777777777777665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.01 E-value=1.7e-05 Score=60.08 Aligned_cols=88 Identities=8% Similarity=-0.041 Sum_probs=51.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 007077 392 SIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGR 470 (619)
Q Consensus 392 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 470 (619)
.+...+.+.|++++|+..|++.+.. .|+ ..+|..+..++.+.|++++|+..|+...+. .+.+...|..+..+|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHH
Confidence 3445555666666666666666655 443 445566666666666666666666666543 12235556666666666
Q ss_pred cCCHHHHHHHHhh
Q 007077 471 AGLLDEAEELIRK 483 (619)
Q Consensus 471 ~g~~~~A~~~~~~ 483 (619)
.|++++|++.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.0046 Score=56.03 Aligned_cols=114 Identities=9% Similarity=-0.036 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHH
Q 007077 51 PCLLAYNLLIKAFAKKGSFRKSLLLFSKLRERGVSPDNFTYPFVFKAVGWLGEVKKGEKVHGYVVKTGLEFDTYVCNSIM 130 (619)
Q Consensus 51 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 130 (619)
||..--..+.+-|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++... -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 444444445555556666666666665432 1455555555566655555544322 2334555555
Q ss_pred HHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHh
Q 007077 131 DMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRM 180 (619)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 180 (619)
..+.+......|.-. ......++.....++..|-..|.+++...+++..
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~ 125 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAA 125 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 555554444333221 1111112223334455555555555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.88 E-value=4.9e-05 Score=62.91 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCccc
Q 007077 494 PLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKE-----MGVRKV 561 (619)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~ 561 (619)
..+..+...+...|++++|+..++++.+.+|.+...|..++.+|.+.|++++|++.|+++.. .|+.|.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 45788899999999999999999999999999999999999999999999999999999853 466543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=4.8e-05 Score=55.38 Aligned_cols=78 Identities=14% Similarity=-0.009 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIP------NENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTL 532 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 532 (619)
..+..++..+.+.|++++|++.|++.. ..+......++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 344556777777788888777776654 11222335678899999999999999999999999999999998877
Q ss_pred HHHH
Q 007077 533 LANI 536 (619)
Q Consensus 533 l~~~ 536 (619)
+...
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.77 E-value=3.3e-05 Score=68.45 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=94.5
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLL 474 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 474 (619)
..+.|++++|+..+++.++. .|+ ...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhcccc
Confidence 34679999999999999988 666 468888889999999999999999998864 465 45555556666555555
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 007077 475 DEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHT 531 (619)
Q Consensus 475 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 531 (619)
+++..-.........++....+......+...|+.++|...++++.+..|..+..+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 555443333222233444344455566788899999999999999999998876543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.73 E-value=1.6e-05 Score=63.56 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCC-----------hHHHHHHHHHHHh
Q 007077 507 GNVDMGEKLAALLEKIESKDSSFHTLLANIYASANR-----------WEDVTNVRQKMKE 555 (619)
Q Consensus 507 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 555 (619)
+.+++|+..++++.+++|+++.+|..++.+|...|+ +++|.+.+++..+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 456889999999999999999999999999988764 5778888887775
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.72 E-value=1.3e-05 Score=63.98 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=69.2
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc----------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHG----------GLVDEGRRFFNTMTEVYQIQPK-LEHYGCL 464 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 464 (619)
|-+.+.+++|+..|+..++. .|+ ..++..+..++... +.+++|+..|++..+. .|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhH
Confidence 34455667777777776665 444 33555555555432 2334455555555432 222 4444444
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChH
Q 007077 465 IDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWE 544 (619)
Q Consensus 465 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 544 (619)
..+|...|++. ++.. ...+++++|.+.|+++.+++|++..++..|....
T Consensus 82 G~~y~~~g~~~------------~~~~------------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~------- 130 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDET------------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA------- 130 (145)
T ss_dssp HHHHHHHHHHC------------CCHH------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred HHHHHHcccch------------hhHH------------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------
Confidence 44444333210 0000 0123468899999999999999998777666553
Q ss_pred HHHHHHHHHHhCC
Q 007077 545 DVTNVRQKMKEMG 557 (619)
Q Consensus 545 ~A~~~~~~m~~~~ 557 (619)
.|.+++.+..+.|
T Consensus 131 ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 131 KAPQLHAEAYKQG 143 (145)
T ss_dssp THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh
Confidence 4556666655544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=9.9e-06 Score=80.07 Aligned_cols=207 Identities=8% Similarity=-0.055 Sum_probs=91.9
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHH--HH
Q 007077 286 IVLWTAMINGYVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENRITVDAVVATA--LI 363 (619)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~ 363 (619)
..++..+..++...|++++| |+++... .|+...-..+ ....-...+..+.+.++...+....++..-... +.
T Consensus 20 a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~ 93 (497)
T d1ya0a1 20 TDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV-EQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSL 93 (497)
T ss_dssp TCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHH
T ss_pred HHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH-HHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHH
Confidence 44555566666667777665 5555442 2321110000 000001112344445554444332333222111 11
Q ss_pred HHHHhCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 007077 364 EMYAKCGLIEKALEIFYELRE---KDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDE 440 (619)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 440 (619)
..+...+.++.|+..+..... ++...+..+...+.+.|+.++|...+++.... .| ..++..+...+...|++++
T Consensus 94 ~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~ 170 (497)
T d1ya0a1 94 FLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQ 170 (497)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHH
Confidence 122334455566555554432 24455666666677777777777766665432 11 2355666667777777777
Q ss_pred HHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 007077 441 GRRFFNTMTEVYQIQPK-LEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRI 505 (619)
Q Consensus 441 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (619)
|...|++..+. .|+ ...|+.++..+...|+..+|+..|.+... -.+|...++..|...+.+
T Consensus 171 A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~-~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 171 AESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA-VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS-SSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHH
Confidence 77777777653 344 56777777777777777777777776663 244455556666655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00018 Score=55.74 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007077 391 TSIICGLAMNGKINKALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMT 449 (619)
Q Consensus 391 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 449 (619)
..+...+.+.|++++|+..|.+.++. .|+ ...+..+..+|...|++++|...++.++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 34445555555555555555555554 222 3444445555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.58 E-value=8.9e-05 Score=59.98 Aligned_cols=90 Identities=18% Similarity=-0.054 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHhhCC----CCCCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--------
Q 007077 466 DLLGRAGLLDEAEELIRKIP----NENNE-------IIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKD-------- 526 (619)
Q Consensus 466 ~~~~~~g~~~~A~~~~~~~~----~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------- 526 (619)
..+.+.|++++|++.|++.. ..++. ....+|+.+..+|...|++++|...++++.++.|..
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 34445566666666665543 11111 123457888888999999999999988887654321
Q ss_pred ---cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 527 ---SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 527 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..++..++.+|...|++++|.+.+++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22467889999999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00028 Score=51.11 Aligned_cols=60 Identities=10% Similarity=-0.071 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 496 YGALLSACRIYGNVDMGEKLAALLEKIESKD-------SSFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
+-.+...+.+.|++++|+..++++.++.|.+ ..++..|+.+|.+.|++++|...++++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 5577888999999999999999998776654 34588899999999999999999999987
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.29 E-value=0.00038 Score=56.03 Aligned_cols=70 Identities=11% Similarity=-0.033 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 007077 459 EHYGCLIDLLGRAGLLDEAEELIRKIPN--------ENN--EIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSS 528 (619)
Q Consensus 459 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 528 (619)
..|+.+..+|...|++++|.+.+++... .+. +.....+..+..+|...|++++|+..|+++.++.|....
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 3455666667777777766666655431 111 112224677888899999999999999999887665443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=0.0023 Score=52.45 Aligned_cols=123 Identities=10% Similarity=0.011 Sum_probs=80.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHHhCCChHH
Q 007077 326 ALLTGCAQLGALEQGKWIHGYINENRITVDAVVATALIEMYAKCGLIEKALEIFYELREKDAASWTSIICGLAMNGKINK 405 (619)
Q Consensus 326 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 405 (619)
.........|+++.|.+.+...+..- +.+... .....+-+...-..+.......+..++..+...|++++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~---------~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW-RGPVLD---------DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTG---------GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-cccccc---------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 33456677888888888888876631 101000 00000001111111112234567788889999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 007077 406 ALELFSQMISGGAKPD-DITFIGVLSACSHGGLVDEGRRFFNTMTE----VYQIQPKLEH 460 (619)
Q Consensus 406 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 460 (619)
|+..++++++. .|. ...|..++.++...|+..+|.+.|+.+.. ..|+.|...+
T Consensus 86 Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 86 VIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999887 554 56889999999999999999999988744 3488888655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.17 E-value=0.00017 Score=63.63 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=86.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHH
Q 007077 432 CSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDM 511 (619)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (619)
..+.|++++|+..+++.++. -+.+...+..++..|+..|++++|.+.++.... -++.....+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~-l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhccccHH
Confidence 34679999999999999874 355688999999999999999999999998873 244444456666555544444443
Q ss_pred HHHHHHHHhc-cCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 512 GEKLAALLEK-IESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 512 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
+......... ..|++...+...+.++...|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3322222111 23444444566788899999999999999998754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.2 Score=47.41 Aligned_cols=117 Identities=10% Similarity=-0.012 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH-H-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 007077 401 GKINKALELFSQMISGG-AKPDDI-T-FIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDEA 477 (619)
Q Consensus 401 g~~~~A~~~~~~m~~~g-~~p~~~-~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 477 (619)
.+.+.|..++....... ..++.. . ...+.......+..+.+...+...... ..+.......+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 45666666666655432 122211 1 111222233445556666666555432 23333334444445566777777
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007077 478 EELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEK 521 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (619)
...++.+...+... ....-=+..++...|+.+.|...|..+..
T Consensus 305 ~~~~~~l~~~~~~~-~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEK-DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccH-HHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 77777776332221 11123344556677777777777776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.041 Score=40.64 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHhhCCCCCCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 007077 456 PKLEHYGCLIDLLGRAG---LLDEAEELIRKIPNENNEII-VPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSF 529 (619)
Q Consensus 456 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 529 (619)
|.+.+-..+..++.++. +.++++.++++.... ++.. ...+-.|.-+|.+.|++++|++.++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44555555666666554 345677777666522 2222 2345566666777777777777777777777777663
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.32 E-value=0.16 Score=38.54 Aligned_cols=46 Identities=7% Similarity=-0.085 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 007077 301 RFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINENR 351 (619)
Q Consensus 301 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 351 (619)
++++|+.+|++..+.|.... ...+. .....+.++|...+....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~~a---~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFG---CLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTH---HHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCChhh---hhhhc--cccccCHHHHHHHHhhhhccc
Confidence 45667777776666552211 11111 122334555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.22 E-value=0.1 Score=39.59 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 007077 508 NVDMGEKLAALLEKIESKDSSFHTLLANIYAS----ANRWEDVTNVRQKMKEMGV 558 (619)
Q Consensus 508 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 558 (619)
+.++|.+.|+++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 4556666666654432 34445556665555 3456666666666665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.07 Score=39.37 Aligned_cols=63 Identities=8% Similarity=-0.090 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 007077 493 VPLYGALLSACRIYG---NVDMGEKLAALLEKIESKDS-SFHTLLANIYASANRWEDVTNVRQKMKE 555 (619)
Q Consensus 493 ~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 555 (619)
..+--.+.+++.++. +.++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++++.+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444444432 23455555555555555432 3444555555555555555555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.79 E-value=0.47 Score=34.47 Aligned_cols=139 Identities=10% Similarity=0.008 Sum_probs=84.6
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhCCCHHH
Q 007077 296 YVQFNRFDEAVALFREMQIIRLKPDKFILVALLTGCAQLGALEQGKWIHGYINEN-RITVDAVVATALIEMYAKCGLIEK 374 (619)
Q Consensus 296 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 374 (619)
+.-.|..++..+++.+.... .+..-|+.++.-....-+-+...+.++.+-+. .+.|- .-...++.+|...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcc---
Confidence 34467777777777776653 23444555555554555555555555444321 10110 011233444443332
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007077 375 ALEIFYELREKDAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQI 454 (619)
Q Consensus 375 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 454 (619)
+....+..++.+.++|+-+.-.+++..+.+.+ +|++.....+..+|.+.|...++.+++.+..+. |+
T Consensus 85 -----------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 85 -----------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp -----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 44445566777888888888888888866644 778888888888999999999998888888765 44
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=1.7 Score=40.74 Aligned_cols=350 Identities=9% Similarity=-0.038 Sum_probs=202.1
Q ss_pred HHHHHhHhcCChhHHHHHHccCCCCCeecHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChH
Q 007077 128 SIMDMYGVLGKICNVKKLFDEMPDKDVVSWNVSISGHVKCMRFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLE 207 (619)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 207 (619)
.-+..+.+.+++......+...+ .+...-.....+....|+.++|...+..+-......|+
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------ 137 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------ 137 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------
Confidence 33556677788877776664322 23334445667778889998988888877552223333
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhcCChhhHHHHhccCCCCCchhHHHHHHHHHhcCCHHHHHHHHccCCCCChh
Q 007077 208 LGKEIHRYINQELEFTPIMGNALLDMYCKCGCLSEARELFDEMPNKNVICWTSMVSGYVNCGQLEKARDLFDRSPVRDIV 287 (619)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 287 (619)
.+..++....+....++..+-.-+......|++..|..+...+...........+.....-..+... ..... .+..
T Consensus 138 ~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~---~~~~~-~~~~ 213 (450)
T d1qsaa1 138 ACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTF---ARTTG-ATDF 213 (450)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHH---HHHSC-CCHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHH---HhcCC-CChh
Confidence 2233344444433344444445556667778899998888877655444555555554433333322 22222 2233
Q ss_pred hHHHHHHHHHH--cCChhHHHHHHHHHHHcC-CCCCHH-HH-HHHHHHHHccCcHHHHHHHHHHHHHcCCCCChhHHHHH
Q 007077 288 LWTAMINGYVQ--FNRFDEAVALFREMQIIR-LKPDKF-IL-VALLTGCAQLGALEQGKWIHGYINENRITVDAVVATAL 362 (619)
Q Consensus 288 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g-~~p~~~-~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 362 (619)
....+..++.+ ..+.+.|...+....... ..++.. .. ..+.......+..+.+..........+ .+.......
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~ 291 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHH
Confidence 33333333333 357888888888876543 222221 11 122223334566677777776665554 344444555
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 007077 363 IEMYAKCGLIEKALEIFYELREK---DAASWTSIICGLAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVD 439 (619)
Q Consensus 363 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 439 (619)
+......+++..+...|..+... .....-=+..++...|+.+.|...|...... ++ |...+.+-. .|..-
T Consensus 292 ~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~~-Lg~~~ 364 (450)
T d1qsaa1 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQR-IGEEY 364 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHHH-TTCCC
T ss_pred HHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHHH-cCCCC
Confidence 66667789999999999998743 2222344678889999999999999988642 33 444443321 11100
Q ss_pred HHHHHHHHhHHhcCCC--CChh----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHH
Q 007077 440 EGRRFFNTMTEVYQIQ--PKLE----HYGCLIDLLGRAGLLDEAEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGE 513 (619)
Q Consensus 440 ~a~~~~~~~~~~~~~~--p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 513 (619)
.+ .....+ +... .-..-+..+...|...+|...+..+....++. ....+.....+.|.++.|+
T Consensus 365 -------~~-~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~---~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 365 -------EL-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKT---EQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp -------CC-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHTTCHHHHH
T ss_pred -------CC-CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHH---HHHHHHHHHHHCCChhHHH
Confidence 00 000000 0000 01123556778899999999888776443333 3777778888999999999
Q ss_pred HHHHHHh
Q 007077 514 KLAALLE 520 (619)
Q Consensus 514 ~~~~~~~ 520 (619)
....++.
T Consensus 434 ~a~~~~~ 440 (450)
T d1qsaa1 434 QATIAGK 440 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8887763
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.53 E-value=0.55 Score=34.10 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=94.3
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 007077 397 LAMNGKINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLIDLLGRAGLLDE 476 (619)
Q Consensus 397 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 476 (619)
+...|..++..++..+.... . +..-|+.++.-....-+-+-..+.++.+-+.+.+ ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s--s-~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS--S-TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--S-CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc--C-CccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 45567888888888877654 1 2334444544444444555555566555433222 23455555
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 007077 477 AEELIRKIPNENNEIIVPLYGALLSACRIYGNVDMGEKLAALLEKIESKDSSFHTLLANIYASANRWEDVTNVRQKMKEM 556 (619)
Q Consensus 477 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 556 (619)
....+-.+-. +... ++..++....+|+-+.-.++++.+.+-+..+|.+...++.+|.+.|...++-+++.+.-+.
T Consensus 75 vv~C~~~~n~--~se~---vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 75 VVECGVINNT--LNEH---VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHTTC--CCHH---HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcc--hHHH---HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 5554444431 2222 5667778889999999999999988877778888999999999999999999999999998
Q ss_pred CCc
Q 007077 557 GVR 559 (619)
Q Consensus 557 ~~~ 559 (619)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 875
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.63 E-value=1 Score=30.86 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 007077 402 KINKALELFSQMISGGAKPDDITFIGVLSACSHGGLVDEGRRFFNTMTEVYQIQPKLEHYGCLID 466 (619)
Q Consensus 402 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 466 (619)
+.-++.+-+..+....+.|++....+.+.+|.+.+++..|.++|+.++.+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 455667777777778889999999999999999999999999999987653 344556666654
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.72 E-value=4.4 Score=27.70 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHhHhcCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHhccCChhHHHHHHH
Q 007077 169 RFEDAVDVFRRMRQGCNLMPDEGTVVSTLSACTALKNLELGKEIHRYINQELEFTPIMGNALLD 232 (619)
Q Consensus 169 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 232 (619)
+.-++.+-++.+.. ..+.|++....+.+++|.+.+++..|..+++.+......+...|..++.
T Consensus 21 D~we~rrgmN~l~~-~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 44456666666666 7888999999999999999999999999999888775545556655443
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