Citrus Sinensis ID: 007087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MSEVSGDGGAAAPEWNGSTGVTATPAPPPLMSSASFKEGGGGRSSSRRRPVRPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLSSSTVLKHAKGTSKSFDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDHENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccccHHHHHcccccccccccccccccHHHHHHHHccccccccHHcHHHHHHHHHcccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccEEEcEEEcccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHEccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccEcccccccccccccHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccc
msevsgdggaaapewngstgvtatpappplmssasfkeggggrsssrrrpvrpsfdadnefmtllhgsdpvkVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHaaqkdddmppiEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWkdandkvmpVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEEslrgssngsgrstsdgrsisngssrrqslggadniskltsngfiskrtpssrslssstvlkhakgtsksfdggtrsldrskvllngspnqsidatkdsdtpntwkgnledkpsefqstdtedsvpgVLYDLLQKEVVALRKaghekdqslkdKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDHENRakrfgntkgpvssaqllpgrnvprsgltrstq
msevsgdggaaapewngstGVTATPAPPPLMSSasfkeggggrsssrrrpvrpsfdadnefmtllhgsdpvkvELNRLENevrdkdrelgeAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAenlietknleikkindEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAvlaggaaanavRDYQRKVQEMNEERKTLDRELARAKVTANRVATvvanewkdandkvmPVKQWLEERRFLQGEMQQLRDRLAITERTakseaqlkekyHLRLKVLeeslrgssngsgrstsdgrsisngssrrqslggadniskltsngfiskrtpssrslssstvlkhakgtsksfdggtrslDRSKVLLngspnqsidatkdsdtpntwkgnledkpsefqstdtedsvPGVLYDLLQKEVVALRkaghekdqslkdkddaIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDhenrakrfgntkgpvssaqllpgrnvprsgltrstq
MSEVSGDGGAAAPEWNGSTGVTATPAPPPLMSSASFKEggggrsssrrrPVRPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVeelteelskveeklklaeNLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVREleeavlaggaaanavRDYQRKVQEMNEERKTLDRELarakvtanrvatvvanEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEEslrgssngsgrstsdgrsisNGSSRRQSLGGADNISKLTSNGFIskrtpssrslssstvlkHAKGTSKSFDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMrrevaamekevaamrveKDHENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ
********************************************************************************************************************************************************************************ILAPL**************************************VQVALA*****************QIEICQEENKILD******VAEVEKLTQTVRELEEAVLAGGAAANAV**********************RAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQG****************************************************************************************************************************************************************GVLYDLLQKEVVAL*******************ILA************************************************************************
******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***********APEWNGSTGVTATPAPPPLMSSAS****************RPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESL***************************GGADNISKLTSNGFISK***********************FDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLED***********DSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDHENRAKRFGNTKGPVSSAQLLPGRNVP*********
**************************PPPLMS**SFKE****************FDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEES************************************************************************************************************************DSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAM************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSEVSGDGGAAAPEWNGSTGVTATPAPPPLMSSASFKEGGGGRSSSRRRPVRPSFDADNEFMTLLHGSDPVKVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKSKEAALLEAERTVQVALAKASMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVLAGGAAANAxxxxxxxxxxxxxxxxxxxxxxxxxxxxANRVATVVANEWKDANDKVMPxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLSSSTVLKHAKGTSKSFDGGTRSLDRSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDHENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q9C9X0622 Microtubule-associated pr yes no 0.990 0.983 0.778 0.0
Q8L7S4634 Microtubule-associated pr no no 0.993 0.968 0.775 0.0
Q9LQU7604 Microtubule-associated pr no no 0.944 0.966 0.764 0.0
Q9ZUA3629 Microtubule-associated pr no no 0.982 0.965 0.754 0.0
Q6Z746599 Microtubule-associated pr yes no 0.928 0.958 0.784 0.0
Q653N3608 Microtubule-associated pr no no 0.899 0.914 0.736 0.0
Q2QLI6567 Microtubule-associated pr no no 0.896 0.977 0.728 0.0
Q8GYX3513 Microtubule-associated pr no no 0.820 0.988 0.479 1e-116
Q10PZ6515 Microtubule-associated pr no no 0.614 0.737 0.514 1e-101
>sp|Q9C9X0|MP701_ARATH Microtubule-associated protein 70-1 OS=Arabidopsis thaliana GN=MAP70.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/628 (77%), Positives = 550/628 (87%), Gaps = 16/628 (2%)

Query: 1   MSEVSGDGGAAAPEWNGSTGVTATPAP-PPLMSSASFKEGGGGRSSSRRRPVRPSFDA-- 57
           MS+VS DGG  + E   +T   A P P P L  SAS+KE    +SS RRRPVRPSFDA  
Sbjct: 1   MSDVSADGGFLSAEQ--ATTPVAIPTPYPSLTVSASYKE----KSSGRRRPVRPSFDAAA 54

Query: 58  DNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVEELTEEL 117
           DNEF+TLLHGSDPVKVELNRLENEVRDKDREL EA AEIKALRLSER REKA EELT+EL
Sbjct: 55  DNEFITLLHGSDPVKVELNRLENEVRDKDRELSEANAEIKALRLSERQREKACEELTDEL 114

Query: 118 SKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAI 177
           +K++ KLKL E+L+++KNLEIKKIN+EK+ASMAAQFAAEATLRRVHAAQKDDDMPPIEAI
Sbjct: 115 AKLDGKLKLTESLLQSKNLEIKKINEEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAI 174

Query: 178 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKN 237
           LAPLEAELKLAR EI KLQ+DN+ALDRLTKSKEAALL+AERTV+ ALAKA++VDDLQNKN
Sbjct: 175 LAPLEAELKLARSEIGKLQEDNRALDRLTKSKEAALLDAERTVETALAKAALVDDLQNKN 234

Query: 238 QELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQ 297
           QELMKQIEICQEENKILD+MHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRK Q
Sbjct: 235 QELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQ 294

Query: 298 EMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRD 357
           EMNEERKTLDRELARAKVTANRVATVVANEWKD NDKVMPVKQWLEERRFLQGEMQQLRD
Sbjct: 295 EMNEERKTLDRELARAKVTANRVATVVANEWKDGNDKVMPVKQWLEERRFLQGEMQQLRD 354

Query: 358 RLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQSLGGA 417
           +LAI++R AKSEAQLK+K+ LRL+VLEE+LRG+S+ S R+T +GRS+SNG SRRQS+GG+
Sbjct: 355 KLAISDRAAKSEAQLKDKFQLRLRVLEETLRGTSSISIRNTPEGRSMSNGPSRRQSIGGS 414

Query: 418 DNISKLTSNGFISKRTPSSRSLS--SSTVLKHAKGTSKSFDGGTRSLDRSKVLLNG---- 471
           DN+ K  SNGF+SK+TP   S +  S++VLK+AKGTSKSFDGGTRSLDR K LL G    
Sbjct: 415 DNLQKFASNGFLSKKTPMRNSFTSNSTSVLKNAKGTSKSFDGGTRSLDRGKALLKGPGNY 474

Query: 472 SPNQSIDATKDSDTPNTWKGNLEDK-PSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHE 530
           S N++ D TK+S++PNTWK + E+K PSE  +  TED+VPGVLYDLLQKEVVALRK+ HE
Sbjct: 475 SFNKACDETKESESPNTWKEDSEEKPPSELPAPATEDNVPGVLYDLLQKEVVALRKSSHE 534

Query: 531 KDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRVEKDHENRAKRF 590
           KDQSLKDKDDAIE+LAKKV+TLTKAMEVEAKKMRREVAAMEKEVAAMRV+KD +NRAKR 
Sbjct: 535 KDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVDKDQDNRAKRS 594

Query: 591 GNTKGPVSSAQLLPGRNVPRSGLTRSTQ 618
            NTK   ++AQ+L  R   RSGLTRSTQ
Sbjct: 595 SNTKPSSNTAQILAARAAGRSGLTRSTQ 622
Plant-specific protein that interact with microtubules. In association with MAP70.5, is essential for the normal banding pattern of secondary cell wall and for the proper development of xylem tracheary elements and wood formation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7S4|MP702_ARATH Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQU7|MP704_ARATH Microtubule-associated protein 70-4 OS=Arabidopsis thaliana GN=MAP70.4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUA3|MP703_ARATH Microtubule-associated protein 70-3 OS=Arabidopsis thaliana GN=MAP70.3 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z746|MP702_ORYSJ Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica GN=MAP70.2 PE=2 SV=1 Back     alignment and function description
>sp|Q653N3|MP703_ORYSJ Microtubule-associated protein 70-3 OS=Oryza sativa subsp. japonica GN=MAP70.3 PE=2 SV=1 Back     alignment and function description
>sp|Q2QLI6|MP701_ORYSJ Microtubule-associated protein 70-1 OS=Oryza sativa subsp. japonica GN=MAP70.1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GYX3|MP705_ARATH Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1 Back     alignment and function description
>sp|Q10PZ6|MP704_ORYSJ Microtubule-associated protein 70-4 OS=Oryza sativa subsp. japonica GN=MAP70.4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
225424380637 PREDICTED: microtubule-associated protei 0.995 0.965 0.832 0.0
224099555619 predicted protein [Populus trichocarpa] 0.990 0.988 0.852 0.0
224111438620 predicted protein [Populus trichocarpa] 0.990 0.987 0.845 0.0
255570071614 Myosin heavy chain, clone, putative [Ric 0.975 0.982 0.847 0.0
356527851616 PREDICTED: microtubule-associated protei 0.977 0.980 0.825 0.0
356513048616 PREDICTED: microtubule-associated protei 0.977 0.980 0.825 0.0
449526451610 PREDICTED: microtubule-associated protei 0.970 0.983 0.832 0.0
449449096615 PREDICTED: LOW QUALITY PROTEIN: microtub 0.972 0.977 0.827 0.0
356502384 1233 PREDICTED: uncharacterized protein LOC10 0.970 0.486 0.820 0.0
449526449619 PREDICTED: microtubule-associated protei 0.975 0.974 0.834 0.0
>gi|225424380|ref|XP_002284904.1| PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera] gi|297737627|emb|CBI26828.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/640 (83%), Positives = 566/640 (88%), Gaps = 25/640 (3%)

Query: 1   MSEVSGDGGAAAP-----EWNGSTG-------VTATPAPPPLMSSASFKEGGGGRSSSRR 48
           M+E+SGD  + +P       NG  G            + PPL  S SFKEG G  SS RR
Sbjct: 1   MAEISGDIASVSPVELSYSENGGNGGRPPANEAVYVVSTPPLTVSQSFKEGKG--SSRRR 58

Query: 49  RPVRPSFDADNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREK 108
             VRPS DAD EF+ LLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALR SERLREK
Sbjct: 59  ASVRPSLDAD-EFINLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRFSERLREK 117

Query: 109 AVEELTEELSKVEEKLKLAENLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKD 168
           AVEE+TEELSKVEEKLKL E+L+E+KNLEIKKINDEK+ASMAAQFAAEATLRRVHAAQKD
Sbjct: 118 AVEEITEELSKVEEKLKLTESLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKD 177

Query: 169 DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS 228
           DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS
Sbjct: 178 DDMPPIEAILAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKAS 237

Query: 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA 288
           MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA
Sbjct: 238 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA 297

Query: 289 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFL 348
           VRDYQRKVQEMNEERKTLDRELARAKVTANRVA VVANEWKDANDKVMPVKQWLEERRFL
Sbjct: 298 VRDYQRKVQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFL 357

Query: 349 QGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGS 408
           QGEMQQLRD+LAITERTAKSEAQLKEKYHLRLKV+EESLRGSSN + RST + RS+SNG 
Sbjct: 358 QGEMQQLRDKLAITERTAKSEAQLKEKYHLRLKVIEESLRGSSNSNNRSTPEVRSVSNGP 417

Query: 409 SRRQSLGGADNISKLTSNGFISKRTPS-----SRSLSSSTVLKHAKGTSKSFDGGTRSLD 463
           SRRQSLGGADNISK   NGF+SKRTP+     S S  SS+VL+HAKGTSKSFDGGTRSLD
Sbjct: 418 SRRQSLGGADNISKFIPNGFLSKRTPTSQLRSSLSSGSSSVLRHAKGTSKSFDGGTRSLD 477

Query: 464 RSKVLLNGS-P----NQSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQ 518
           R KVLLNG+ P    NQS DATKD +  + WKGN ++KP+EF   DTEDSVPGVLYD+LQ
Sbjct: 478 RGKVLLNGTLPNYALNQSCDATKDIEVHDAWKGNSDEKPNEFPVVDTEDSVPGVLYDMLQ 537

Query: 519 KEVVALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMR 578
           KEVV+LRKAGHEKDQSLKDKDDAIE+LAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMR
Sbjct: 538 KEVVSLRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMR 597

Query: 579 VEKDHENRAKRFGNTKGPVSSAQLLPGRNVPRSGLTRSTQ 618
           VEKDHENRAKRFG++KGPVS+ QLLPGRN+ R GLTRSTQ
Sbjct: 598 VEKDHENRAKRFGSSKGPVSNTQLLPGRNIARGGLTRSTQ 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224099555|ref|XP_002311531.1| predicted protein [Populus trichocarpa] gi|222851351|gb|EEE88898.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111438|ref|XP_002315855.1| predicted protein [Populus trichocarpa] gi|222864895|gb|EEF02026.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570071|ref|XP_002525998.1| Myosin heavy chain, clone, putative [Ricinus communis] gi|223534730|gb|EEF36422.1| Myosin heavy chain, clone, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356527851|ref|XP_003532520.1| PREDICTED: microtubule-associated protein 70-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356513048|ref|XP_003525226.1| PREDICTED: microtubule-associated protein 70-2-like [Glycine max] Back     alignment and taxonomy information
>gi|449526451|ref|XP_004170227.1| PREDICTED: microtubule-associated protein 70-1-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449096|ref|XP_004142301.1| PREDICTED: LOW QUALITY PROTEIN: microtubule-associated protein 70-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502384|ref|XP_003519999.1| PREDICTED: uncharacterized protein LOC100815530 [Glycine max] Back     alignment and taxonomy information
>gi|449526449|ref|XP_004170226.1| PREDICTED: microtubule-associated protein 70-1-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2200306622 MAP70-1 "microtubule-associate 0.990 0.983 0.646 1.9e-195
TAIR|locus:2826057634 MAP70-2 "microtubule-associate 0.993 0.968 0.639 1.3e-194
TAIR|locus:2006787604 MAP70-4 "AT1G14840" [Arabidops 0.944 0.966 0.615 8.3e-177
TAIR|locus:2130734513 MAP70-5 "microtubule-associate 0.766 0.923 0.370 4.3e-77
UNIPROTKB|P30622 1438 CLIP1 "CAP-Gly domain-containi 0.616 0.264 0.218 2.7e-05
POMBASE|SPAC27F1.02c161 cdc8 "tropomyosin" [Schizosacc 0.234 0.900 0.233 5.8e-05
TAIR|locus:2019529 1132 LINC1 "AT1G67230" [Arabidopsis 0.464 0.253 0.254 8.2e-05
MGI|MGI:1026431972 Myh11 "myosin, heavy polypepti 0.318 0.099 0.230 0.0001
UNIPROTKB|E1B7E3 2229 GOLGA4 "Uncharacterized protei 0.491 0.136 0.200 0.00016
UNIPROTKB|F1N775 1937 MYH8 "Uncharacterized protein" 0.310 0.099 0.224 0.00024
TAIR|locus:2200306 MAP70-1 "microtubule-associated proteins 70-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1893 (671.4 bits), Expect = 1.9e-195, P = 1.9e-195
 Identities = 406/628 (64%), Positives = 451/628 (71%)

Query:     1 MSEVSGDGGAAAPEWNGSTGVTATPAP-PPLMSSASFKEXXXXXXXXXXXPVRPSFDA-- 57
             MS+VS DGG  + E   +T V A P P P L  SAS+KE           PVRPSFDA  
Sbjct:     1 MSDVSADGGFLSAE-QATTPV-AIPTPYPSLTVSASYKEKSSGRRR----PVRPSFDAAA 54

Query:    58 DNEFMTLLHGSDPVKVELNRLENEVRDKDRELGEAQAEIKALRLSERLREKAVXXXXXXX 117
             DNEF+TLLHGSDPVKVELNRLENEVRDKDREL EA AEIKALRLSER REKA        
Sbjct:    55 DNEFITLLHGSDPVKVELNRLENEVRDKDRELSEANAEIKALRLSERQREKACEELTDEL 114

Query:   118 XXXXXXXXXXXNLIETKNLEIKKINDEKRASMAAQFAAEATLRRVHAAQKDDDMPPIEAI 177
                        +L+++KNLEIKKIN+EK+ASMAAQFAAEATLRRVHAAQKDDDMPPIEAI
Sbjct:   115 AKLDGKLKLTESLLQSKNLEIKKINEEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAI 174

Query:   178 LAPLEAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKN 237
             LAPLEAELKLAR EI KLQ+DN+ALDRLTKSKEAALL+AERTV+ ALAKA++VDDLQNKN
Sbjct:   175 LAPLEAELKLARSEIGKLQEDNRALDRLTKSKEAALLDAERTVETALAKAALVDDLQNKN 234

Query:   238 QELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVREXXXXXXXXXXXXXXXRDYQRKVQ 297
             QELMKQIEICQEENKILD+MHRQKVAEVEKLTQTVRE               RDYQRK Q
Sbjct:   235 QELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQ 294

Query:   298 EMNEERKTLDRELXXXXXXXXXXXXXXXXEWKDANDKVMPVKQWLEERRFLQGEMQQLRD 357
             EMNEERKTLDREL                EWKD NDKVMPVKQWLEERRFLQGEMQQLRD
Sbjct:   295 EMNEERKTLDRELARAKVTANRVATVVANEWKDGNDKVMPVKQWLEERRFLQGEMQQLRD 354

Query:   358 RLAITERTAKSEAQLKEKYHLRLKVLEEXXXXXXXXXXXXXXXXXXXXNGSSRRQSLGGA 417
             +LAI++R AKSEAQLK+K+ LRL+VLEE                    NG SRRQS+GG+
Sbjct:   355 KLAISDRAAKSEAQLKDKFQLRLRVLEETLRGTSSISIRNTPEGRSMSNGPSRRQSIGGS 414

Query:   418 DNISKLTSNGFIXXXX--XXXXXXXXXXXXXHAKGTSKSFDGGTRSLDRSKVLLNG---- 471
             DN+ K  SNGF+                   +AKGTSKSFDGGTRSLDR K LL G    
Sbjct:   415 DNLQKFASNGFLSKKTPMRNSFTSNSTSVLKNAKGTSKSFDGGTRSLDRGKALLKGPGNY 474

Query:   472 SPNQSIDATKDSDTPNTWKGNLEDKP-SEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHE 530
             S N++ D TK+S++PNTWK + E+KP SE  +  TED+VPGVLYDLLQKEVVALRK+ HE
Sbjct:   475 SFNKACDETKESESPNTWKEDSEEKPPSELPAPATEDNVPGVLYDLLQKEVVALRKSSHE 534

Query:   531 KDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMXXXXXXXXXXXXXXXXXKDHENRAKRF 590
             KDQSLKDKDDAIE+LAKKV+TLTKAMEVEAKKM                 KD +NRAKR 
Sbjct:   535 KDQSLKDKDDAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKEVAAMRVDKDQDNRAKRS 594

Query:   591 GNTKGPVSSAQLLPGRNVPRSGLTRSTQ 618
              NTK   ++AQ+L  R   RSGLTRSTQ
Sbjct:   595 SNTKPSSNTAQILAARAAGRSGLTRSTQ 622
GO:0005737 "cytoplasm" evidence=ISM
GO:0007010 "cytoskeleton organization" evidence=TAS
GO:0008017 "microtubule binding" evidence=IDA
GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA
GO:0009832 "plant-type cell wall biogenesis" evidence=IMP
GO:0010051 "xylem and phloem pattern formation" evidence=IMP
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2826057 MAP70-2 "microtubule-associated proteins 70-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006787 MAP70-4 "AT1G14840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130734 MAP70-5 "microtubule-associated proteins 70-5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P30622 CLIP1 "CAP-Gly domain-containing linker protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPAC27F1.02c cdc8 "tropomyosin" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:102643 Myh11 "myosin, heavy polypeptide 11, smooth muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7E3 GOLGA4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1N775 MYH8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C9X0MP701_ARATHNo assigned EC number0.77860.99020.9839yesno
Q2QLI6MP701_ORYSJNo assigned EC number0.72850.89640.9770nono
Q9ZUA3MP703_ARATHNo assigned EC number0.75470.98220.9650nono
Q9LQU7MP704_ARATHNo assigned EC number0.76450.94490.9668nono
Q6Z746MP702_ORYSJNo assigned EC number0.78490.92880.9582yesno
Q8L7S4MP702_ARATHNo assigned EC number0.77580.99350.9684nono
Q653N3MP703_ORYSJNo assigned EC number0.73650.89960.9144nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030592001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (637 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
pfam07058351 pfam07058, Myosin_HC-like, Myosin II heavy chain-l 1e-156
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-09
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-08
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-07
TIGR03185650 TIGR03185, DNA_S_dndD, DNA sulfur modification pro 8e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
pfam13514 1118 pfam13514, AAA_27, AAA domain 5e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 5e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|203570 pfam07058, Myosin_HC-like, Myosin II heavy chain-like Back     alignment and domain information 
 Score =  451 bits (1161), Expect = e-156
 Identities = 265/351 (75%), Positives = 295/351 (84%), Gaps = 6/351 (1%)

Query: 229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANA 288
           MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKL+Q+VRELEEAVLAGGAAANA
Sbjct: 1   MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLSQSVRELEEAVLAGGAAANA 60

Query: 289 VRDYQRKVQEMNEERKTLDRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFL 348
           VRDYQRK QEMNEERKTL+RELARAKV+ANRVATVVANEWKD NDKVMPVKQWLEERRFL
Sbjct: 61  VRDYQRKFQEMNEERKTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFL 120

Query: 349 QGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGS 408
           QGEMQQLRD+LAI++R AKSEAQLKEK+ LRLKVLEE L+G ++   R T+ GRS SNG 
Sbjct: 121 QGEMQQLRDKLAISDRAAKSEAQLKEKFKLRLKVLEEGLKGPNSSFVRPTTVGRSESNGP 180

Query: 409 SRRQSLGGADNISKLTSNGFISKRTPSSR-----SLSSSTVLKHAKGTSKSFDGGTRSLD 463
           +RRQSLGGA+   K TSNG +SK+ PSS+     +   STVLKHAKGTS SFDGGTRS+D
Sbjct: 181 TRRQSLGGAETSPKFTSNGGLSKKRPSSQLRGSLTGRISTVLKHAKGTSISFDGGTRSMD 240

Query: 464 RSKVLLNGSPNQSIDATKDSDTPNTWKGNLEDKP-SEFQSTDTEDSVPGVLYDLLQKEVV 522
           RSK+L NG  N  ++   +  T      + E K   E  +  +EDSVPGVLYDLLQKEV+
Sbjct: 241 RSKILANGPSNFPLNDKHEEGTSRGESPDSERKTEEEDGNAYSEDSVPGVLYDLLQKEVI 300

Query: 523 ALRKAGHEKDQSLKDKDDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKE 573
           ALRKA  EKDQSL DKD+AIE+LAKKV+TLTKAMEVEAKKMRREVAAMEKE
Sbjct: 301 ALRKACEEKDQSLNDKDEAIEMLAKKVETLTKAMEVEAKKMRREVAAMEKE 351

This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana. Length = 351
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
PF07058351 Myosin_HC-like: Myosin II heavy chain-like; InterP 100.0
PRK11637428 AmiB activator; Provisional 98.18
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.17
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.12
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.08
PRK02224 880 chromosome segregation protein; Provisional 97.89
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.8
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.78
PRK02224880 chromosome segregation protein; Provisional 97.76
PRK03918 880 chromosome segregation protein; Provisional 97.64
TIGR006061311 rad50 rad50. This family is based on the phylogeno 97.62
PHA02562562 46 endonuclease subunit; Provisional 97.46
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.39
PRK11637428 AmiB activator; Provisional 97.33
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.3
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.24
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.2
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 97.16
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 97.13
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 97.11
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.77
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.75
PRK09039343 hypothetical protein; Validated 96.64
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 96.64
KOG0977546 consensus Nuclear envelope protein lamin, intermed 96.61
PRK04863 1486 mukB cell division protein MukB; Provisional 96.61
KOG0963629 consensus Transcription factor/CCAAT displacement 96.57
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.53
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.51
PRK03918880 chromosome segregation protein; Provisional 96.5
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 96.42
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.19
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.16
PF00038312 Filament: Intermediate filament protein; InterPro: 96.06
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.05
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 95.99
PF10174775 Cast: RIM-binding protein of the cytomatrix active 95.96
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.96
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.94
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.82
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 95.75
PRK04863 1486 mukB cell division protein MukB; Provisional 95.58
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.44
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 95.43
COG4942420 Membrane-bound metallopeptidase [Cell division and 95.28
TIGR026801353 conserved hypothetical protein TIGR02680. Members 95.13
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.12
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 94.9
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.84
PHA02562562 46 endonuclease subunit; Provisional 94.78
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 94.55
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.39
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.9
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 93.88
KOG0979 1072 consensus Structural maintenance of chromosome pro 93.75
KOG4807593 consensus F-actin binding protein, regulates actin 93.37
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 92.74
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 92.55
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 92.43
KOG0018 1141 consensus Structural maintenance of chromosome pro 92.22
PRK09039343 hypothetical protein; Validated 92.07
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 92.01
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 91.65
PF00038312 Filament: Intermediate filament protein; InterPro: 91.63
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 91.6
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 91.57
PRK11281 1113 hypothetical protein; Provisional 91.5
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 91.3
PRK01156895 chromosome segregation protein; Provisional 90.68
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 90.43
KOG09331174 consensus Structural maintenance of chromosome pro 90.1
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 89.8
TIGR00634563 recN DNA repair protein RecN. All proteins in this 89.5
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 89.37
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 89.23
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 89.14
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 88.9
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 88.61
PRK10884206 SH3 domain-containing protein; Provisional 88.58
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 88.21
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 87.89
PF15254861 CCDC14: Coiled-coil domain-containing protein 14 87.89
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 87.64
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.36
KOG0996 1293 consensus Structural maintenance of chromosome pro 87.13
PF05010207 TACC: Transforming acidic coiled-coil-containing p 87.12
COG2433652 Uncharacterized conserved protein [Function unknow 87.07
PF05852146 DUF848: Gammaherpesvirus protein of unknown functi 86.65
COG2433652 Uncharacterized conserved protein [Function unknow 86.29
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 86.11
PRK01156 895 chromosome segregation protein; Provisional 86.05
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 85.94
KOG1937521 consensus Uncharacterized conserved protein [Funct 85.36
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 85.09
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 84.73
KOG09791072 consensus Structural maintenance of chromosome pro 84.21
KOG4809654 consensus Rab6 GTPase-interacting protein involved 83.9
PF135141111 AAA_27: AAA domain 83.74
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 83.72
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 83.42
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.26
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 83.13
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 82.96
PLN02939 977 transferase, transferring glycosyl groups 82.93
PRK06569155 F0F1 ATP synthase subunit B'; Validated 82.86
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 82.38
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 82.35
PF01486100 K-box: K-box region; InterPro: IPR002487 MADS gene 82.32
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 82.19
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 82.02
KOG2077 832 consensus JNK/SAPK-associated protein-1 [Signal tr 81.42
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 81.21
COG5185622 HEC1 Protein involved in chromosome segregation, i 80.6
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 80.43
PF1004699 BLOC1_2: Biogenesis of lysosome-related organelles 80.14
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=6.8e-154  Score=1144.68  Aligned_cols=341  Identities=79%  Similarity=1.067  Sum_probs=324.9

Q ss_pred             hhHHhhhhhHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhhHHH
Q 007087          229 MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEERKTLDR  308 (618)
Q Consensus       229 ~V~dlQNkN~EL~kQiEIcqEEnkiLdk~hRQKvaEVEKLsqTv~ELEEavLAggAaANAVRdyqrq~~eLneEk~tLer  308 (618)
                      |||||||+||||||||||||||||||||||||||+|||||||||+||||||||||||||||||||||++|||||++||||
T Consensus         1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR   80 (351)
T PF07058_consen    1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER   80 (351)
T ss_pred             CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhhhhhcccccCCCCccchhhHHHHhhhhHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHhhc
Q 007087          309 ELARAKVTANRVATVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDRLAITERTAKSEAQLKEKYHLRLKVLEESLR  388 (618)
Q Consensus       309 ELARaKv~ANRVA~vvAnEWKD~ndkVmPVKqWLEErRflQGEmqrLrdKLAiaERtAkaEaQLKeK~klRLk~lEe~Lk  388 (618)
                      |||||||+||||||||||||||+||||||||||||||||||||||||||||||+|||||+|+|||||||+|||+|||+|+
T Consensus        81 ELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk  160 (351)
T PF07058_consen   81 ELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK  160 (351)
T ss_pred             HHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccCCCCccccCCCCccccccccccccccccCCccCcc-----hhhhhhcccCCccccCCCCcccc
Q 007087          389 GSSNGSGRSTSDGRSISNGSSRRQSLGGADNISKLTSNGFISKRTPSSRSLS-----SSTVLKHAKGTSKSFDGGTRSLD  463 (618)
Q Consensus       389 ~~~~~~~~~~~~~r~~s~gp~rr~s~gg~~~~~~l~sng~~~kr~~~sq~r~-----s~~~l~~a~~~s~sfdgg~rsld  463 (618)
                      +++|++++++++++|.++||++|+++||+++++++++||++.||+|+||||+     ++++|+|++++|+|||||++++|
T Consensus       161 ~~~s~~~~~~~~~~s~~~gps~r~~lgg~~~~~~~~sng~~~kr~~~sq~r~s~~~~~~~~lk~~~~~s~sfdgg~rsld  240 (351)
T PF07058_consen  161 GSSSNSSRPTSEGKSPSNGPSRRQSLGGAENFSKLSSNGGLSKRRPSSQPRSSLSGSSSPVLKHAKGTSKSFDGGSRSLD  240 (351)
T ss_pred             CCCCCCCCCCcCCCCCCCCCccCcCCCCccccccccCCCccccCCCcccccccccccchhhhcccccCccccccCCCcch
Confidence            9999999999999999999999999999999999999999999999999996     45789999999999999999999


Q ss_pred             ccccccCCC----CC-CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhhhcccccccch
Q 007087          464 RSKVLLNGS----PN-QSIDATKDSDTPNTWKGNLEDKPSEFQSTDTEDSVPGVLYDLLQKEVVALRKAGHEKDQSLKDK  538 (618)
Q Consensus       464 r~k~~~n~~----~n-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~D~Vsg~LYD~LQKEVi~LRKa~~eKdqsLkdK  538 (618)
                      ++++..||.    ++ ++++.+..++..+++.+    +++++++++++|+||||||||||||||+|||+||+|||||+||
T Consensus       241 ~~k~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~VsG~LYD~LQKEVi~LRKac~eKdqsLkdK  316 (351)
T PF07058_consen  241 RSKVLANGPENHPVNSKSTDASKEAEKENSEEK----PNSEKPNSESEDSVSGFLYDMLQKEVINLRKACHEKDQSLKDK  316 (351)
T ss_pred             hhhhhhcCccccccccchhhhhhhccccCcccc----cccCCCCCCcCCcchHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence            999999993    33 56666666665444443    2346677899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhHhhhhhHHHHHHHHHhHHHHHhHHH
Q 007087          539 DDAIEILAKKVDTLTKAMEVEAKKMRREVAAMEKE  573 (618)
Q Consensus       539 ddaIeML~KKVdtLtKamEVEaKKmrREvaa~EKE  573 (618)
                      ||||+||+|||||||||||||+|||||||||||||
T Consensus       317 DdaIeMLaKKVdtLtKAmEVEaKKmrREvAamEKE  351 (351)
T PF07058_consen  317 DDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKE  351 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999999997

>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PRK06569 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-05
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 8e-07
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 71.8 bits (175), Expect = 3e-13
 Identities = 80/515 (15%), Positives = 160/515 (31%), Gaps = 164/515 (31%)

Query: 167 KDDDMPPIEAILAPL--EAELKLARQEIAKLQDDNKALDRLTKSKEAALLEAERTVQVAL 224
            + D   ++ +   +  + E+      I   +D      RL       L + E  VQ   
Sbjct: 31  DNFDCKDVQDMPKSILSKEEID----HIIMSKDAVSGTLRLF---WTLLSKQEEMVQKF- 82

Query: 225 AKASMVDDLQNKNQE-LMKQI-EICQE-----------------ENKILDKMHRQKVAEV 265
                V+++   N + LM  I    ++                 +N++  K +  ++   
Sbjct: 83  -----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 266 EKLTQTVRELEEA---VLAG--GA-----AANAVRDYQRKVQEMNE---------ERKTL 306
            KL Q + EL  A   ++ G  G+     A +    Y  KVQ   +            + 
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSP 195

Query: 307 DRELARAKVTANRVATVVANEWKDANDKVMPVKQWLEE-----RRFLQGEMQQ-----LR 356
           +  L        ++   +   W   +D    +K  +       RR L+ +  +     L 
Sbjct: 196 ETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 357 DRLAITERTAKSEAQLKEKYHLRLKVLEESLRGSSNGSGRSTSDGRSISNGSSRRQSLGG 416
           +   +        A+    ++L  K+L  +         R       +S  ++   SL  
Sbjct: 252 N---V------QNAKAWNAFNLSCKILLTT---------RFKQVTDFLSAATTTHISL-- 291

Query: 417 ADNISKLTSNGFISKRTPS-SRSLSSSTVLKHAKGTSKSFDGGTRSLDRSKVLLNGSPNQ 475
            D+ S           TP   +SL    +               R  D  + +L  +P +
Sbjct: 292 -DHHSM----TL----TPDEVKSLLLKYL-------------DCRPQDLPREVLTTNPRR 329

Query: 476 -SIDATKDSDTPNTWKG------------------NLEDKPSEFQS--TD----TEDS-V 509
            SI A    D   TW                     LE  P+E++            + +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHI 387

Query: 510 P-GVL----YDLLQKEVVALRKAGHEKDQSLKDKDD---AIEILAKKVDTLTKAMEVEAK 561
           P  +L    +D+++ +V+ +    H+   SL +K      I I +  ++   K       
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISIPSIYLELKVK------- 438

Query: 562 KMRREVAAMEKEVAAMRVEKDHENRAKRFGNTKGP 596
                  A+ + +    V+  +  +     +   P
Sbjct: 439 --LENEYALHRSI----VDHYNIPK-TFDSDDLIP 466
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.08
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.89
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.69
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.56
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.87
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.4
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.89
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.3
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.81
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 90.5
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.87
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 88.61
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 86.53
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 85.68
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.08  E-value=0.0043  Score=53.78  Aligned_cols=29  Identities=10%  Similarity=0.137  Sum_probs=13.0

Q ss_pred             HhhhhhhHHHhhhhHHHHHHHHHHHHHHh
Q 007087           73 VELNRLENEVRDKDRELGEAQAEIKALRL  101 (618)
Q Consensus        73 ~ElnRLeN~lr~KdrEL~~A~aEIkaLr~  101 (618)
                      .++..+...+.+...++..+..++..+..
T Consensus        13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~   41 (284)
T 1c1g_A           13 LDKENALDRADEAEADKKAAEDRSKQLED   41 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444433
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00