Citrus Sinensis ID: 007089

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccHHHHHHHccHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHcccccccEEEcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcEEEEEccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHccEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEccccccccccccccccccccccccccccccEEccccccccccEEEEEEEEEcccccccEEEEEEEEccccccccccEEccccEEEEccccEEEEEEEEcccccEEEEcccccEEEcccEEEEEEccccccEEEEEEEEEEEc
cccccccccEEEccccEEccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEEEEccccccccccccccccEEcHHHHHHHcccHHHHHHHcccccEEEHcHHccccccccccHHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccHHHHHHHHHHHHccEEEEEcccccccccHccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccEEccHccccccccHEEEEcccccHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccEEEEccccEEEccccccEEEEEEEEccccccccEEccccccccccccccccccEEcccHHcccccEEEEEEEEEEcccccccEEEEEEEEccccccccHHHHccEEEEEEccccEEEEEEEEccHHHHHEEcccccEEEccccEEEEEccccccEEEEEEEEEEEc
mynggmagltywspnvnifrdprwgrgqetpgedpvltgkYAASYVrglqgntgsrlKVAACCKHytaydldnwngvdryhfnarvskqdledtynvpfkACVVEGKVASVMCSynqvngkptcadpdilkntihgqwrldgyivsdcdsvgvlyntqhytrtpEEAAADAIKAAIHTEgavrggllrEEDVNLALAYTITVQMRlgmfdgepsaqpfgnlgprdvctpAHQQLALQAAHQGIVLLKNsartlplstlrhhtvavigpnsdvTVTMIGNYAgvacgyttplqgISRYAKTIHQAgcfgvacngnqLIGAAEVAARQADATVLVMGLDQSIEAEFIDRaglllpgrQQELVSRVAKASRGPVVLVLMCggpvdvsfakndprigailwvgypgqaggAAIADVLFgranpggklpmtwypqdyvsrlpmtdmrmraargypgrtyrfykgpvvfpfghgmsytTFAHTlskapnqfsvpiatslyafknttisSNAIRVAHTNCNDAMSLGLHvdikntgdmagtHTLLvfakppagnwspnkqligfkKVHVTAGALQSVRLDIHVckhlsvvdkfgirripmgehslhigdlkHSISLQANLEGIKF
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGlqgntgsrLKVAACCKHYTAYDLDNWNGVDRYHFNARVskqdledtynVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTvavigpnsdVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGehslhigdlkhsislqanlegikf
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEaaadaikaaiHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPahqqlalqaahqGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
*****MAGLTYWSPNVNIFRDPRWGR********PVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGE****PFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSI***********
*YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
*YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIE*EFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
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MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANLEGIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q9FGY1774 Beta-D-xylosidase 1 OS=Ar yes no 0.988 0.789 0.730 0.0
Q94KD8768 Probable beta-D-xylosidas no no 0.987 0.794 0.683 0.0
Q9FLG1784 Beta-D-xylosidase 4 OS=Ar no no 0.978 0.771 0.582 0.0
A5JTQ2774 Beta-xylosidase/alpha-L-a N/A no 0.978 0.781 0.566 0.0
A5JTQ3774 Beta-xylosidase/alpha-L-a N/A no 0.977 0.780 0.565 0.0
Q9LXD6773 Beta-D-xylosidase 3 OS=Ar no no 0.977 0.781 0.562 0.0
P83344461 Putative beta-D-xylosidas N/A no 0.724 0.971 0.735 0.0
Q9LJN4781 Probable beta-D-xylosidas no no 0.961 0.760 0.526 0.0
Q9SGZ5767 Probable beta-D-xylosidas no no 0.957 0.771 0.480 1e-176
Q9LXA8792 Probable beta-D-xylosidas no no 0.983 0.767 0.447 1e-168
>sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/628 (73%), Positives = 525/628 (83%), Gaps = 17/628 (2%)

Query: 1   MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT-GSRLKV 59
           MYNGG+AGLTYWSPNVNI RDPRWGRGQETPGEDP++  KYAASYVRGLQG   G+RLKV
Sbjct: 149 MYNGGVAGLTYWSPNVNILRDPRWGRGQETPGEDPIVAAKYAASYVRGLQGTAAGNRLKV 208

Query: 60  AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 119
           AACCKHYTAYDLDNWNGVDR+HFNA+V++QDLEDTYNVPFK+CV EGKVASVMCSYNQVN
Sbjct: 209 AACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFKSCVYEGKVASVMCSYNQVN 268

Query: 120 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKA----- 174
           GKPTCAD ++LKNTI GQWRL+GYIVSDCDSV V +N QHYT TPEEAAA +IKA     
Sbjct: 269 GKPTCADENLLKNTIRGQWRLNGYIVSDCDSVDVFFNQQHYTSTPEEAAARSIKAGLDLD 328

Query: 175 -----AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTP 229
                AI TEGAV+ GLL E D+NLALA T+TVQMRLGMFDG  +  P+ NLGPRDVCTP
Sbjct: 329 CGPFLAIFTEGAVKKGLLTENDINLALANTLTVQMRLGMFDG--NLGPYANLGPRDVCTP 386

Query: 230 AHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 289
           AH+ LAL+AAHQGIVLLKNSAR+LPLS  RH TVAVIGPNSDVT TMIGNYAG AC YT+
Sbjct: 387 AHKHLALEAAHQGIVLLKNSARSLPLSPRRHRTVAVIGPNSDVTETMIGNYAGKACAYTS 446

Query: 290 PLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAG 349
           PLQGISRYA+T+HQAGC GVAC GNQ  GAAE AAR+ADATVLVMGLDQSIEAE  DR G
Sbjct: 447 PLQGISRYARTLHQAGCAGVACKGNQGFGAAEAAAREADATVLVMGLDQSIEAETRDRTG 506

Query: 350 LLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAI 409
           LLLPG QQ+LV+RVA+ASRGPV+LVLM GGP+DV+FAKNDPR+ AI+W GYPGQAGGAAI
Sbjct: 507 LLLPGYQQDLVTRVAQASRGPVILVLMSGGPIDVTFAKNDPRVAAIIWAGYPGQAGGAAI 566

Query: 410 ADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGM 469
           A+++FG ANPGGKLPMTWYPQDYV+++PMT M MRA+  YPGRTYRFYKGPVVFPFG G+
Sbjct: 567 ANIIFGAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGPVVFPFGFGL 626

Query: 470 SYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNT 528
           SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + LHV++ NT
Sbjct: 627 SYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNT 686

Query: 529 GDMAGTHTLLVFAKPPAG---NWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 585
           G+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  CKHL VVD+
Sbjct: 687 GEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDE 746

Query: 586 FGIRRIPMGEHSLHIGDLKHSISLQANL 613
           +G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct: 747 YGKRRIPMGEHKLHIGDLKHTILVQPQL 774
Involved in pectic arabinan modification in mucilage secretory cells. Acts also as a beta-D-xylosidase during the remodeling of xylans in vascular development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 5
>sp|Q94KD8|BXL2_ARATH Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FLG1|BXL4_ARATH Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ2|XYL1_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 1 (Fragment) OS=Medicago sativa subsp. varia GN=Xyl1 PE=1 SV=1 Back     alignment and function description
>sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXD6|BXL3_ARATH Beta-D-xylosidase 3 OS=Arabidopsis thaliana GN=BXL3 PE=1 SV=1 Back     alignment and function description
>sp|P83344|XYNB_PRUPE Putative beta-D-xylosidase (Fragment) OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q9LJN4|BXL5_ARATH Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2 Back     alignment and function description
>sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXA8|BXL6_ARATH Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
183579871 769 arabinofuranosidase [Citrus unshiu] 0.977 0.785 0.946 0.0
224111912 768 predicted protein [Populus trichocarpa] 0.991 0.798 0.809 0.0
224099193 755 predicted protein [Populus trichocarpa] 0.987 0.807 0.8 0.0
255556320 782 Periplasmic beta-glucosidase precursor, 0.991 0.783 0.784 0.0
408354266 775 alpha-L-arabinofuranosidase/beta-D-xylos 0.996 0.794 0.776 0.0
408354264 775 alpha-L-arabinofuranosidase/beta-D-xylos 0.996 0.794 0.776 0.0
298364130 774 alpha-L-arabinofuranosidase/beta-D-xylos 0.996 0.795 0.754 0.0
157041199 774 beta-D-xylosidase [Pyrus pyrifolia] 0.996 0.795 0.761 0.0
86553064 772 beta xylosidase [Fragaria x ananassa] 0.995 0.796 0.769 0.0
65736613 774 alpha-L-arabinofuranosidase / beta-D-xyl 0.996 0.795 0.759 0.0
>gi|183579871|dbj|BAG28345.1| arabinofuranosidase [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1209 bits (3127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/621 (94%), Positives = 593/621 (95%), Gaps = 17/621 (2%)

Query: 1   MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVA 60
           MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVL GKYAASYVR LQGNTGSRLKVA
Sbjct: 142 MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGKYAASYVRRLQGNTGSRLKVA 201

Query: 61  ACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG 120
           ACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG
Sbjct: 202 ACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG 261

Query: 121 KPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKA------ 174
           KPTCADPDILKNTI GQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKA      
Sbjct: 262 KPTCADPDILKNTIRGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC 321

Query: 175 ----AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPA 230
               AIHTEGAVRGGLLREEDVNLA AYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPA
Sbjct: 322 GPFLAIHTEGAVRGGLLREEDVNLASAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPA 381

Query: 231 HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP 290
           HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP
Sbjct: 382 HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP 441

Query: 291 LQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGL 350
           LQGISRYAKTIHQAGC GVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGL
Sbjct: 442 LQGISRYAKTIHQAGCLGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGL 501

Query: 351 LLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIA 410
           LLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIA
Sbjct: 502 LLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIA 561

Query: 411 DVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMS 470
           DVLFGRANPGGKLPMTWYPQDYV+RLPMTDMRMRA RGYPGRTYRFYKGPVVFPFGHGMS
Sbjct: 562 DVLFGRANPGGKLPMTWYPQDYVARLPMTDMRMRAGRGYPGRTYRFYKGPVVFPFGHGMS 621

Query: 471 YTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD 530
           YTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVD+KNTGD
Sbjct: 622 YTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDVKNTGD 681

Query: 531 MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR 590
           MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR
Sbjct: 682 MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR 741

Query: 591 IP-------MGEHSLHIGDLK 604
           IP       +G  S+H+   K
Sbjct: 742 IPWVNIVSILGISSIHLSSSK 762

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111912|ref|XP_002316021.1| predicted protein [Populus trichocarpa] gi|222865061|gb|EEF02192.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224099193|ref|XP_002311398.1| predicted protein [Populus trichocarpa] gi|222851218|gb|EEE88765.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556320|ref|XP_002519194.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] gi|223541509|gb|EEF43058.1| Periplasmic beta-glucosidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|408354266|gb|AFU54452.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|408354264|gb|AFU54451.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Prunus salicina] Back     alignment and taxonomy information
>gi|298364130|gb|ADI79208.1| alpha-L-arabinofuranosidase/beta-D-xylosidase [Malus x domestica] Back     alignment and taxonomy information
>gi|157041199|dbj|BAF79669.1| beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|86553064|gb|AAS17751.2| beta xylosidase [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|65736613|dbj|BAD98523.1| alpha-L-arabinofuranosidase / beta-D-xylosidase [Pyrus pyrifolia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2157994774 BXL1 "beta-xylosidase 1" [Arab 0.988 0.789 0.703 3.5e-242
TAIR|locus:2196060768 BXL2 "beta-xylosidase 2" [Arab 0.987 0.794 0.660 8.7e-230
TAIR|locus:2174809784 XYL4 "beta-D-xylosidase 4" [Ar 0.978 0.771 0.563 3e-188
TAIR|locus:2144756773 BXL3 "AT5G09730" [Arabidopsis 0.977 0.781 0.549 3e-181
UNIPROTKB|P83344461 P83344 "Putative beta-D-xylosi 0.711 0.954 0.724 3.7e-174
TAIR|locus:2091236781 AT3G19620 [Arabidopsis thalian 0.961 0.760 0.512 2e-166
TAIR|locus:2142434792 AT5G10560 [Arabidopsis thalian 0.894 0.698 0.424 4.7e-146
TAIR|locus:2029391767 AT1G78060 [Arabidopsis thalian 0.870 0.701 0.441 6.9e-134
ASPGD|ASPL0000029139763 bxlB [Emericella nidulans (tax 0.923 0.748 0.377 1.1e-96
UNIPROTKB|Q5ATH9763 bxlB "Exo-1,4-beta-xylosidase 0.923 0.748 0.377 1.1e-96
TAIR|locus:2157994 BXL1 "beta-xylosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2334 (826.7 bits), Expect = 3.5e-242, P = 3.5e-242
 Identities = 442/628 (70%), Positives = 505/628 (80%)

Query:     1 MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT-GSRLKV 59
             MYNGG+AGLTYWSPNVNI RDPRWGRGQETPGEDP++  KYAASYVRGLQG   G+RLKV
Sbjct:   149 MYNGGVAGLTYWSPNVNILRDPRWGRGQETPGEDPIVAAKYAASYVRGLQGTAAGNRLKV 208

Query:    60 AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 119
             AACCKHYTAYDLDNWNGVDR+HFNA+V++QDLEDTYNVPFK+CV EGKVASVMCSYNQVN
Sbjct:   209 AACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFKSCVYEGKVASVMCSYNQVN 268

Query:   120 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEXXXXXXXX----- 174
             GKPTCAD ++LKNTI GQWRL+GYIVSDCDSV V +N QHYT TPEE             
Sbjct:   269 GKPTCADENLLKNTIRGQWRLNGYIVSDCDSVDVFFNQQHYTSTPEEAAARSIKAGLDLD 328

Query:   175 -----XXHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTP 229
                     TEGAV+ GLL E D+NLALA T+TVQMRLGMFDG  +  P+ NLGPRDVCTP
Sbjct:   329 CGPFLAIFTEGAVKKGLLTENDINLALANTLTVQMRLGMFDG--NLGPYANLGPRDVCTP 386

Query:   230 XXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 289
                         GIVLLKNSAR+LPLS  RH TVAVIGPNSDVT TMIGNYAG AC YT+
Sbjct:   387 AHKHLALEAAHQGIVLLKNSARSLPLSPRRHRTVAVIGPNSDVTETMIGNYAGKACAYTS 446

Query:   290 PLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAG 349
             PLQGISRYA+T+HQAGC GVAC GNQ  GAAE AAR+ADATVLVMGLDQSIEAE  DR G
Sbjct:   447 PLQGISRYARTLHQAGCAGVACKGNQGFGAAEAAAREADATVLVMGLDQSIEAETRDRTG 506

Query:   350 LLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAI 409
             LLLPG QQ+LV+RVA+ASRGPV+LVLM GGP+DV+FAKNDPR+ AI+W GYPGQAGGAAI
Sbjct:   507 LLLPGYQQDLVTRVAQASRGPVILVLMSGGPIDVTFAKNDPRVAAIIWAGYPGQAGGAAI 566

Query:   410 ADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGM 469
             A+++FG ANPGGKLPMTWYPQDYV+++PMT M MRA+  YPGRTYRFYKGPVVFPFG G+
Sbjct:   567 ANIIFGAANPGGKLPMTWYPQDYVAKVPMTVMAMRASGNYPGRTYRFYKGPVVFPFGFGL 626

Query:   470 SYTTFAHTLSKAP-NQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNT 528
             SYTTF H+L+K+P  Q SV ++    A      SS++I+V+HTNCN    + LHV++ NT
Sbjct:   627 SYTTFTHSLAKSPLAQLSVSLSNLNSANTILNSSSHSIKVSHTNCNSFPKMPLHVEVSNT 686

Query:   529 GDMAGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 585
             G+  GTHT+ VFA+PP         NKQLI F+KVHV AGA Q+V++D+  CKHL VVD+
Sbjct:   687 GEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGAKQTVQVDVDACKHLGVVDE 746

Query:   586 FGIRRIPMGEHSLHIGDLKHSISLQANL 613
             +G RRIPMGEH LHIGDLKH+I +Q  L
Sbjct:   747 YGKRRIPMGEHKLHIGDLKHTILVQPQL 774
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0010214 "seed coat development" evidence=IMP
GO:0046556 "alpha-N-arabinofuranosidase activity" evidence=IDA
TAIR|locus:2196060 BXL2 "beta-xylosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174809 XYL4 "beta-D-xylosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144756 BXL3 "AT5G09730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P83344 P83344 "Putative beta-D-xylosidase" [Prunus persica (taxid:3760)] Back     alignment and assigned GO terms
TAIR|locus:2091236 AT3G19620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142434 AT5G10560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029391 AT1G78060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029139 bxlB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ATH9 bxlB "Exo-1,4-beta-xylosidase bxlB" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P83344XYNB_PRUPE3, ., 2, ., 1, ., -0.73530.72490.9718N/Ano
Q9FGY1BXL1_ARATH3, ., 2, ., 1, ., 5, 50.73080.98860.7894yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.370.914
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_X0551
hypothetical protein (768 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.3327000301
Predicted protein (63 aa)
  •     0.461
fgenesh4_pg.C_LG_IX000155
hypothetical protein (242 aa)
  •     0.461

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
PLN03080779 PLN03080, PLN03080, Probable beta-xylosidase; Prov 0.0
PRK15098765 PRK15098, PRK15098, beta-D-glucoside glucohydrolas 3e-77
pfam01915221 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase fam 2e-63
pfam00933296 pfam00933, Glyco_hydro_3, Glycosyl hydrolase famil 2e-43
COG1472397 COG1472, BglX, Beta-glucosidase-related glycosidas 9e-42
pfam1431071 pfam14310, Fn3-like, Fibronectin type III-like dom 5e-10
>gnl|CDD|178629 PLN03080, PLN03080, Probable beta-xylosidase; Provisional Back     alignment and domain information 
 Score =  715 bits (1846), Expect = 0.0
 Identities = 303/640 (47%), Positives = 419/640 (65%), Gaps = 32/640 (5%)

Query: 1   MYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT------- 53
           MYN G AGLT+W+PN+NIFRDPRWGRGQETPGEDP +   Y+  +V+G QG         
Sbjct: 143 MYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDD 202

Query: 54  --GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASV 111
               +L ++ACCKHYTAYDL+ W    RY FNA V++QD+EDTY  PFK+C+ EGK + +
Sbjct: 203 GEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCL 262

Query: 112 MCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADA 171
           MCSYNQVNG P CA  D+L+     +W   GYI SDCD+V  ++  Q YT++PE+A AD 
Sbjct: 263 MCSYNQVNGVPACARKDLLQKA-RDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADV 321

Query: 172 IKAAI----------HTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNL 221
           +KA +          HT+ A+  G ++EED++ AL    +VQ+RLG+FDG+P    +G L
Sbjct: 322 LKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKL 381

Query: 222 GPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 281
           GP +VCT  H++LAL+AA QGIVLLKN  + LPL+     ++A+IGP ++    + G+Y 
Sbjct: 382 GPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYT 441

Query: 282 GVACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSI 340
           GV C  TT  +G+  Y  KT   AGC  V+CN +   G A   A++AD  V+V GLD S 
Sbjct: 442 GVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQ 501

Query: 341 EAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGY 400
           E E  DR  LLLPG+Q +L+S VA  S+ PVVLVL  GGPVDVSFAK DPRI +ILW+GY
Sbjct: 502 ETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGY 561

Query: 401 PGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYK 458
           PG+ GG A+A+++FG  NPGG+LPMTWYP+ + + +PMTDM MRA  +RGYPGRTYRFY 
Sbjct: 562 PGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYT 620

Query: 459 GPVVFPFGHGMSYTTFAHTLSKAPNQFSVP--IATSLYAFKNTTISSNAIRVAHTN---- 512
           G VV+ FG+G+SYT F++ +  AP + S+         + K      + +          
Sbjct: 621 GDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYVQIEDIAS 680

Query: 513 CNDAMSLGLHVDIKNTGDMAGTHTLLVFAK-PPAGNWSPNKQLIGFKKVHVTAGALQSVR 571
           C +++   +H+ + N G+M G+H +++F++ PP     P KQL+GF +VH  +G      
Sbjct: 681 C-ESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETE 739

Query: 572 LDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 611
           + +  CKHLSV ++ G R +P+G+H L +GDL+HS+S++ 
Sbjct: 740 IVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779

Length = 779
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal domain Back     alignment and domain information
>gnl|CDD|216204 pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain Back     alignment and domain information
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|222669 pfam14310, Fn3-like, Fibronectin type III-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
PLN03080779 Probable beta-xylosidase; Provisional 100.0
PRK15098765 beta-D-glucoside glucohydrolase; Provisional 100.0
COG1472397 BglX Beta-glucosidase-related glycosidases [Carboh 100.0
PF00933299 Glyco_hydro_3: Glycosyl hydrolase family 3 N termi 100.0
PF01915227 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-ter 100.0
PRK05337337 beta-hexosaminidase; Provisional 100.0
PF1431071 Fn3-like: Fibronectin type III-like domain; PDB: 3 99.83
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 96.37
PF1269082 BsuPI: Intracellular proteinase inhibitor; InterPr 95.3
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 94.51
COG0486454 ThdF Predicted GTPase [General function prediction 92.69
PF14874102 PapD-like: Flagellar-associated PapD-like 90.2
PRK13203102 ureB urease subunit beta; Reviewed 89.13
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 89.0
PRK13202104 ureB urease subunit beta; Reviewed 86.45
PRK13201136 ureB urease subunit beta; Reviewed 85.69
TIGR00192101 urease_beta urease, beta subunit. In a number of s 85.06
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 84.62
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 84.19
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 84.17
PRK13205162 ureB urease subunit beta; Reviewed 83.87
>PLN03080 Probable beta-xylosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-140  Score=1208.86  Aligned_cols=607  Identities=49%  Similarity=0.952  Sum_probs=524.3

Q ss_pred             CCCccccceEeCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHhcCC---------CCCCeEEEeecccccccCC
Q 007089            2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD   72 (618)
Q Consensus         2 ~~~~~~Gi~~laP~~di~r~p~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~~---------~~~~~v~a~~KHF~g~g~~   72 (618)
                      |+.+.+|+++|+|++||+|||+|||++|||||||+|+++|+.|+|+|||+.+         .++.+|+||+||||||+++
T Consensus       144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e  223 (779)
T PLN03080        144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE  223 (779)
T ss_pred             ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence            3444468888999999999999999999999999999999999999999842         1344699999999999998


Q ss_pred             CCCCCCccccccccCHHHHHHhhcHHHHHHHHcCCCceEEecccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhh
Q 007089           73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG  152 (618)
Q Consensus        73 ~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~  152 (618)
                      .+.+.+|...++.+++++|+|+||+||+++|++|.+.+||||||++||+|||.|++||++ ||+||||+|+|||||++|.
T Consensus       224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~  302 (779)
T PLN03080        224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA  302 (779)
T ss_pred             ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence            766778888899999999999999999999999888899999999999999999999986 9999999999999999999


Q ss_pred             hccccccccCCHHHHHHHHHHH----------HHHHHHHHHCCCCCHHHHHHHHhhhHHHHHHhCCCCCCCCCCCCCCCC
Q 007089          153 VLYNTQHYTRTPEEAAADAIKA----------AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG  222 (618)
Q Consensus       153 ~~~~~~~~~~~~~~a~~~al~a----------~~~l~~av~~G~i~~~~ld~av~RiL~~k~~lGl~~~~p~~~~~~~~~  222 (618)
                      .+...|++..+.+++++.||+|          .+.|.+||++|+|++++||+||+|||++|+++|+|+.+|...+|.+..
T Consensus       303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~  382 (779)
T PLN03080        303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG  382 (779)
T ss_pred             HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence            9988888877899999999998          467999999999999999999999999999999999444333444444


Q ss_pred             CCCCCCHHHHHHHHHHHhhcceeccCCCCCCCCCCCCCcEEEEEccCCCccccccccccccCCCcCCHHHHHHhhh-hee
Q 007089          223 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTI  301 (618)
Q Consensus       223 ~~~~~~~~~~~la~~~A~esivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~-~~~  301 (618)
                      ...+++++|+++|+++|++|||||||++++|||++.+.++|+||||+|+....++|+|++.+++.++++++|+++. .+.
T Consensus       383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~  462 (779)
T PLN03080        383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS  462 (779)
T ss_pred             ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence            5678899999999999999999999999999998765579999999999988888889888888999999999875 467


Q ss_pred             eeccccccccCCccchHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEEcCcee
Q 007089          302 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV  381 (618)
Q Consensus       302 y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~~g~P~  381 (618)
                      |..||....+.+...+++|+++|++||++||++|.+...++|+.||.+|.||+.|.+||++|++++++|+|||+++|+|+
T Consensus       463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv  542 (779)
T PLN03080        463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV  542 (779)
T ss_pred             eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence            88888655444456788999999999999999999998999999999999999999999999987777899999999999


Q ss_pred             ecccccCCCCccEEEEccCCCcchhHHHHHHHcCCCCCCcccCcccCCccccCCCCCccccccc--cCCCCCCccccCCC
Q 007089          382 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKG  459 (618)
Q Consensus       382 ~l~~~~~~~~v~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~  459 (618)
                      +|+|+.+.++++|||++|||||++|+|+||||||++|||||||+||||+++ +++|++|+++++  ..+|++++||||+.
T Consensus       543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~  621 (779)
T PLN03080        543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTG  621 (779)
T ss_pred             eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCC
Confidence            999987667899999999999999999999999999999999999999988 789998887764  35589999999999


Q ss_pred             CcccccCcCCCCCCceecCCccCCCcccccccccccccccc-----cccccccccc-cCCCCCeeEEEEEEEEeCCCCCc
Q 007089          460 PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTT-----ISSNAIRVAH-TNCNDAMSLGLHVDIKNTGDMAG  533 (618)
Q Consensus       460 ~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~v~v~VtNtG~~~G  533 (618)
                      +|+||||||||||||+||+++++...++.............     .....+++.+ ..|+.. .++|+|+|||||+++|
T Consensus       622 ~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~G  700 (779)
T PLN03080        622 DVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMDG  700 (779)
T ss_pred             CcceeccCCCccceeEeccccccccccccccccccccccccccccccccccccccccccCCCc-eEEEEEEEEECCcccC
Confidence            99999999999999999998754311111000000000000     0000000100 112222 4899999999999999


Q ss_pred             ceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEeccCCceeEEeCCCCEEecCceEEEEEeCCCCeEEEEE
Q 007089          534 THTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA  611 (618)
Q Consensus       534 ~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~  611 (618)
                      +||||||+++|.+. .+|.|||+||+||+|+|||+++|+|+|+.+++|++||++++|++|+|+|+|+||+++|++++++
T Consensus       701 ~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~  779 (779)
T PLN03080        701 SHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI  779 (779)
T ss_pred             cEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence            99999999999875 8999999999999999999999999999658999999999999999999999999999998763

>PRK15098 beta-D-glucoside glucohydrolase; Provisional Back     alignment and domain information
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3 Back     alignment and domain information
>PRK05337 beta-hexosaminidase; Provisional Back     alignment and domain information
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>PRK13202 ureB urease subunit beta; Reviewed Back     alignment and domain information
>PRK13201 ureB urease subunit beta; Reviewed Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information
>PRK13205 ureB urease subunit beta; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
2x40_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 2e-30
2x42_A721 Structure Of Beta-Glucosidase 3b From Thermotoga Ne 8e-30
4i8d_A714 Crystal Structure Of Beta-D-Glucoside Glucohydrolas 4e-28
3zyz_A713 Crystal Structure Of A Glycoside Hydrolase Family 3 4e-28
3ac0_A845 Crystal Structure Of Beta-Glucosidase From Kluyvero 3e-26
3abz_A845 Crystal Structure Of Se-Met Labeled Beta-Glucosidas 6e-26
3rrx_A822 Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Bet 1e-22
3usz_A822 Crystal Structure Of Truncated Exo-1,31,4-Beta-Gluc 1e-22
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 1e-21
4i3g_A829 Crystal Structure Of Desr, A Beta-glucosidase From 3e-15
1ex1_A605 Beta-D-Glucan Exohydrolase From Barley Length = 605 5e-14
1lq2_A602 Crystal Structure Of Barley Beta-D-Glucan Glucohydr 5e-14
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Glycerol Length = 721 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 169/668 (25%), Positives = 267/668 (39%), Gaps = 140/668 (20%)
Query: 13  SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
           +P +NI R+P  GR  E   EDPVL+G+ A+S+V+G+Q        V AC KH+ A    
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73  NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
           N    +R   +  VS++ L + Y   F+  V + K  SVM +YN++NGK    +  +LK 
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVSDC---DSVGVLYNTQHYTRTPEEXXXXXXXXXXHTE---GAVRGGL 186
            +  +W  +G+++SD    D+        +    P +            E    A++ G 
Sbjct: 228 VLREEWGFEGFVMSDWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGK 287
Query: 187 LREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLL 246
           L EE ++  +   + V +        PS + +      D+               G+VLL
Sbjct: 288 LSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHAKVAYEAGAEGVVLL 339
Query: 247 KNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP------LQGISR---- 296
           +N    LPLS   +  +A+ G     T+       G   G T P      L+GI      
Sbjct: 340 RNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRYAISILEGIKERGLN 391
Query: 297 -----------YAKTIHQAGCFGVACNG----------NQLIGAAEV--AARQADATVLV 333
                      Y K + +   +    +              +   E+   A++ D  V+V
Sbjct: 392 FDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVIV 451
Query: 334 MGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVLVLM-CGGPVDVSFA 386
           +     I  E  DR        L   + +L+  V++    +G  V+VL+  G PV+V   
Sbjct: 452 IS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVSW 508
Query: 387 KNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAA 446
           ++   +  IL V   GQ  G  +ADVL GR NP GKLP T +P+DY S +P        +
Sbjct: 509 RD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDVP--------S 556
Query: 447 RGYPGRT----------------YRFYKGPVVFP---FGHGMSYTTFAHTLSKAPNQFSV 487
             +PG                  YR+Y    V P   FG+G+SYTTF             
Sbjct: 557 WTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE------------ 604
Query: 488 PIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN 547
                 Y+  N +     +RV +              I+NTG  AG     V+ K P G 
Sbjct: 605 ------YSDLNVSFDGETLRVQYR-------------IENTGGRAGKEVSQVYIKAPKGK 645
Query: 548 W-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKH 605
              P ++L  F K   +  G  + V L+I V    S   +  +  +  GE+ + +G    
Sbjct: 646 IDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGEYEVRVGASSR 703
Query: 606 SISLQANL 613
           +I L+   
Sbjct: 704 NIKLKGTF 711
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga Neapolitana In Complex With Alpha-D-Glucose Length = 721 Back     alignment and structure
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From Trichoderma Reesei Length = 714 Back     alignment and structure
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3 Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a Resolution. Length = 713 Back     alignment and structure
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces Marxianus In Complex With Glucose Length = 845 Back     alignment and structure
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From Kluyveromyces Marxianus Length = 845 Back     alignment and structure
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas Sp. Bb1 Length = 822 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezueale In Complex With D-glucose. Length = 829 Back     alignment and structure
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley Length = 605 Back     alignment and structure
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole Length = 602 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 1e-132
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 1e-114
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 1e-108
3abz_A 845 Beta-glucosidase I; glycoside hydrolase family3 be 2e-65
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 1e-54
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 3e-33
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 2e-15
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 1e-09
4g6c_A342 Beta-hexosaminidase 1; ssgcid, niaid, structural g 5e-07
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Length = 721 Back     alignment and structure
 Score =  404 bits (1040), Expect = e-132
 Identities = 151/661 (22%), Positives = 247/661 (37%), Gaps = 122/661 (18%)

Query: 12  WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDL 71
            +P +NI R+P  GR  E   EDPVL+G+ A+S+V+G+Q        V AC KH+ A + 
Sbjct: 116 LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-----GVGACIKHFVANNQ 170

Query: 72  DNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILK 131
           +      R   +  VS++ L + Y   F+  V + K  SVM +YN++NGK    +  +LK
Sbjct: 171 ETN----RMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLK 226

Query: 132 NTIHGQWRLDGYIVSDCDSVGVLYN------------TQHYTRTPEEAAADAIKAAIHTE 179
             +  +W  +G+++SD  +                    +   T      + I  A    
Sbjct: 227 KVLREEWGFEGFVMSDWYAGDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEA---- 282

Query: 180 GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAA 239
             ++ G L EE ++  +   + V +    F     +               H ++A +A 
Sbjct: 283 --LKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPD--------LEKHAKVAYEAG 332

Query: 240 HQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYT-TPLQGISRYA 298
            +G+VLL+N    LPLS      +A+ G     T+            Y  + L+GI    
Sbjct: 333 AEGVVLLRNE-EALPLSENS--KIALFGTGQIETIKGGTGSGDTHPRYAISILEGIKERG 389

Query: 299 KTIHQAGCFGVACNGN---------------------------QLIGAAEVAARQADATV 331
               +                                               A++ D  V
Sbjct: 390 LNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAV 449

Query: 332 LVMGLDQSIEAEFIDRAG----LLLPGRQQELVSRVAKASRG---PVVLVLMCGGPVDVS 384
           +V+        E  DR        L   + +L+  V++        V+++L  G PV+V 
Sbjct: 450 IVISRISG---EGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVV 506

Query: 385 FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW------YPQDYVSRLPM 438
             ++      IL V   GQ  G  +ADVL GR NP GKLP T+       P       P 
Sbjct: 507 SWRDLV--DGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDVPSWTFPGEPK 564

Query: 439 TDMRMRAARGYPGRTYRFY---KGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYA 495
            + +           YR+Y        + FG+G+SYTTF                     
Sbjct: 565 DNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE-------------------- 604

Query: 496 FKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWS-PNKQL 554
           + +  +S            D  +L +   I+NTG  AG     V+ K P G    P ++L
Sbjct: 605 YSDLNVSF-----------DGETLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQEL 653

Query: 555 IGFKKVHV-TAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 613
             F K  +   G  + V L+I V + L+  +      +  GE+ + +G    +I L+   
Sbjct: 654 KAFHKTRLLNPGESEEVVLEIPV-RDLASFNG-EEWVVEAGEYEVRVGASSRNIKLKGTF 711

Query: 614 E 614
            
Sbjct: 712 S 712
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Length = 822 Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Length = 602 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Length = 845 Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Length = 642 Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Length = 535 Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Length = 340 Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Length = 351 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
3abz_A845 Beta-glucosidase I; glycoside hydrolase family3 be 100.0
3zyz_A713 Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.1 100.0
2x41_A721 Beta-glucosidase; hydrolase, TIM barrel fold, fibr 100.0
3rrx_A822 EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,( 100.0
1x38_A602 Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domai 100.0
3bmx_A642 Uncharacterized lipoprotein YBBD; beta-N-hexosamin 100.0
3sql_A535 Glycosyl hydrolase family 3; structural genomics, 100.0
3tev_A351 Glycosyl hyrolase, family 3; PSI-biology, midwest 100.0
2oxn_A340 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: O 100.0
4gvf_A349 Beta-hexosaminidase; TIM-barrel, hydrolase; HET: N 100.0
4g6c_A348 Beta-hexosaminidase 1; ssgcid, niaid, structural g 100.0
3idu_A127 Uncharacterized protein; all beta-protein, structu 96.87
2l0d_A114 Cell surface protein; structural genomics, northea 96.38
2kut_A122 Uncharacterized protein; structural genomics, PSI- 95.98
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 93.1
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 89.69
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 88.5
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 88.05
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 87.78
2x3c_A 343 Toxic extracellular endopeptidase; hydrolase; 1.99 87.06
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 86.85
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 86.45
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 85.86
1yew_A382 Particulate methane monooxygenase, B subunit; memb 85.78
4ac7_B126 Urease subunit beta; hydrolase, bacillus pasteurii 85.12
4ubp_B126 Protein (urease (chain B)); bacillus pasteurii, ni 85.12
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 85.01
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 84.6
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-130  Score=1135.53  Aligned_cols=535  Identities=30%  Similarity=0.467  Sum_probs=465.2

Q ss_pred             cceE-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHhcCCCCCCeEEEeecccccccCCCCCCCCcccccccc
Q 007089            8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV   86 (618)
Q Consensus         8 Gi~~-laP~~di~r~p~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~   86 (618)
                      |+|+ |||++||.|||+|||++|||||||+|+++|+.|+|+|||++     ||+||+||||||+++    ..|...++.+
T Consensus        94 Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~-----gV~a~~KHFpg~g~e----~~r~~~~~~v  164 (845)
T 3abz_A           94 NAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGE-----GIAATVKHFVCNDLE----DQRFSSNSIV  164 (845)
T ss_dssp             TCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHT-----TCBCEEEEETTCCCC----TTTTTCEEEC
T ss_pred             CCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhC-----CeeEEeeccccCCcc----cCCccccCCC
Confidence            9999 99999999999999999999999999999999999999998     799999999999865    3577778899


Q ss_pred             CHHHHHHhhcHHHHHHHHcCCCceEEecccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhhhccccccccCCHHH
Q 007089           87 SKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEE  166 (618)
Q Consensus        87 ~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~~~~~~~~~~~~~~~  166 (618)
                      ++++|+|+||+||+++|+++++.+||||||++||+|||+|++||++|||+||||+|+|||||++|..             
T Consensus       165 ~~~~L~e~~L~PF~~ai~~ag~~~VM~syn~ing~pa~~s~~ll~~lLR~e~GF~G~VvSD~~~~~~-------------  231 (845)
T 3abz_A          165 SERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYT-------------  231 (845)
T ss_dssp             CHHHHHHTTSHHHHHHHHHHCCSEEEECSSEETTEEGGGCHHHHTCCCCCCTCCCSEEECCTTCCCC-------------
T ss_pred             CHHHHHHhhHHHHHHHHHhcCCCEEEecCCCcCCEeccCCHHHHHHHHhhccCCCeEEEcccccHHH-------------
Confidence            9999999999999999975559999999999999999999999999999999999999999987642             


Q ss_pred             HHHHHHHH--------------HHHHHHHHHCCC-CCHHHHHHHHhhhHHHHHHhC----CCCCCCCCCCCCCCCCCCCC
Q 007089          167 AAADAIKA--------------AIHTEGAVRGGL-LREEDVNLALAYTITVQMRLG----MFDGEPSAQPFGNLGPRDVC  227 (618)
Q Consensus       167 a~~~al~a--------------~~~l~~av~~G~-i~~~~ld~av~RiL~~k~~lG----l~~~~p~~~~~~~~~~~~~~  227 (618)
                       +.+|++|              .+.|.+||++|+ |++++||+||+|||++|+++|    +|+ +|+..+    ....++
T Consensus       232 -~~~Al~AG~D~~m~~~~~~~~~~~l~~av~~G~~i~~~~id~av~RIL~~k~~~g~l~~~~~-~p~~~~----~~~~~~  305 (845)
T 3abz_A          232 -TAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTG-IVENGP----ESTSNN  305 (845)
T ss_dssp             -SHHHHHHTCCBBCSSSCSSCCHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHTHHHHC-CCTTCC----CCCTTC
T ss_pred             -HHHHHHcCCCcccCCchhhhHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHhCCcccccc-CCccCc----cccccC
Confidence             2344554              237999999999 999999999999999999999    898 554221    122378


Q ss_pred             CHHHHHHHHHHHhhcceeccCCCCCCCCCCCCCcEEEEEccCCCccccccccccc-cCCCcCCHHHHHHhhh--heeeec
Q 007089          228 TPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAG-VACGYTTPLQGISRYA--KTIHQA  304 (618)
Q Consensus       228 ~~~~~~la~~~A~esivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g-~~~~~~t~~~~l~~~~--~~~y~~  304 (618)
                      +++|+++++++|++|||||||++++|||++  .+||+||||+|+....++|+++. .+.+.++|+++|+++.  .+.|..
T Consensus       306 ~~~~~~la~~~a~~sivLLKN~~~~LPL~~--~~~iaviGp~A~~~~~~Gggs~~~~~~~~vtpl~gi~~~~~~~v~y~~  383 (845)
T 3abz_A          306 TKETSDLLRKIAADSIVLLKNKNNILPLKK--EDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTV  383 (845)
T ss_dssp             SHHHHHHHHHHHHHHCEEEEECTTCCSCCT--TSCEEEESTTTSCCCCSCBSTTCCCBSCCCCHHHHHHHHHTSCCEEEC
T ss_pred             CHHHHHHHHHHHHhCcEEeccCCcccCCCC--CCEEEEEcCCcchhhccCCCccCcccCCcCCHHHHHHHhhcCceeecc
Confidence            999999999999999999999999999975  37999999999998776665543 5778899999999874  245555


Q ss_pred             ccccc------------------------------------c--------------------------------------
Q 007089          305 GCFGV------------------------------------A--------------------------------------  310 (618)
Q Consensus       305 g~~~~------------------------------------~--------------------------------------  310 (618)
                      ||...                                    .                                      
T Consensus       384 G~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (845)
T 3abz_A          384 GAYSHKSIGGLAESSLIDAAKPADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTL  463 (845)
T ss_dssp             CCCCCSSCCBSGGGEESSTTSCSCTTTBSEEEEEESSCTTTSCTTCCCSEEEEECSSEEECTTCCCTTSBTTBCCCEEEE
T ss_pred             ccccccccccccccccccccccccCCCCceEEEEeccCcccCcccccceeeeeccccceeecccccccccccccceeEEE
Confidence            44200                                    0                                      


Q ss_pred             ---------------------------------------------------------------------c----------
Q 007089          311 ---------------------------------------------------------------------C----------  311 (618)
Q Consensus       311 ---------------------------------------------------------------------~----------  311 (618)
                                                                                           +          
T Consensus       464 ~~~~~~~~~g~~~~~~~~~g~~~l~idg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~y~~~v~~~~~~~~~~~~  543 (845)
T 3abz_A          464 TGQYVPQEDGDYIFSLQVYGSGLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVG  543 (845)
T ss_dssp             EEEECCSSSEEEEEEEEEESEEEEEETTEEEEEESSSCCBCSTTTTTSBCCEEEEEEECTTCCEEEEEEEECTTTSCCSS
T ss_pred             EEEEecCCCccEEEEEeecCceEEEECCEEEeeccccccccccccccCcccceeEEEecCCceeeEEEEeccCCcccccc
Confidence                                                                                 0          


Q ss_pred             --------------CC-ccchHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEE
Q 007089          312 --------------NG-NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM  376 (618)
Q Consensus       312 --------------~~-~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~k~vVvVl~  376 (618)
                                    .+ ...+++|+++|++||++|||+|.++..++||.||.+|.||+.|.+||++|+++ ++|||||++
T Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~-~~~tVVVl~  622 (845)
T 3abz_A          544 EFGAGGFQAGVIKAIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKA-NPNTVIVNQ  622 (845)
T ss_dssp             CCCCCEEEEEEEECCCHHHHHHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHH-CSCEEEEEE
T ss_pred             cccccceeecccccccchhhHHHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHh-CCCEEEEEe
Confidence                          00 12356788999999999999999999999999999999999999999999985 679999999


Q ss_pred             cCceeecccccCCCCccEEEEccCCCcchhHHHHHHHcCCCCCCcccCcccCCccccCCCCCccccccc---cCCCCC--
Q 007089          377 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA---ARGYPG--  451 (618)
Q Consensus       377 ~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~---~~~~~~--  451 (618)
                      +|+|++|+|+   ++++|||++||||||+|+||||||||++|||||||+|| |++. +|+|.++ ++..   ...|.+  
T Consensus       623 sG~pv~m~w~---~~v~AIL~aw~pGqegG~AiAdVLfG~vNPSGkLP~T~-p~~~-~d~P~~~-~~~~~~g~~~y~eg~  696 (845)
T 3abz_A          623 SGTPVEFPWL---EDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW-PFKL-QDNPAFL-NFKTEFGRVIYGEDI  696 (845)
T ss_dssp             CSSCCCCTTG---GGCSEEEECCCCCTTHHHHHHHHHTTSSCCCCCCSSCB-CSSG-GGSTTTT-SCSCBTTEEECTTTT
T ss_pred             CCCcccCcch---hccCeEEEcCCCcHHHHHHHHHHhcCCcCCCCCCceee-eCch-hhCCccc-cCCCCCCceeccCCc
Confidence            9999999997   37999999999999999999999999999999999997 8887 7888653 2211   011221  


Q ss_pred             -CccccCC---CCcccccCcCCCCCCceec--CCccCCCcccccccccccccccccccccccccccCCCCCeeEEEEEEE
Q 007089          452 -RTYRFYK---GPVVFPFGHGMSYTTFAHT--LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDI  525 (618)
Q Consensus       452 -~~Yr~~~---~~~~ypFG~GLSYTtF~ys--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V  525 (618)
                       .+||||+   .+|+||||||||||||+||  +++++                                +. .++|+|+|
T Consensus       697 ~vgYR~y~~~~~~plfPFG~GLSYTtF~ys~~~l~v~--------------------------------~~-~~~v~v~V  743 (845)
T 3abz_A          697 FVGYRYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT--------------------------------DD-KIAISVDV  743 (845)
T ss_dssp             CCTHHHHHHHTCCCSBCTTCCBCSSCEEEEEEEEEEC--------------------------------SS-EEEEEEEE
T ss_pred             cCCCcchhcCCCceeecccCCCcceeEEEeccccccc--------------------------------CC-eEEEEEEE
Confidence             3699997   5899999999999999999  98741                                01 68999999


Q ss_pred             EeCC-CCCcceEEEEeeeCCCCC-CCCccccccccccccCCCCeEEEEEEec-cCCceeEEeCC-CCEEecCceEEEEEe
Q 007089          526 KNTG-DMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIH-VCKHLSVVDKF-GIRRIPMGEHSLHIG  601 (618)
Q Consensus       526 tNtG-~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~-~~~~ls~~d~~-~~~~~~~G~y~i~vG  601 (618)
                      |||| +++|+||||||+++|.++ .+|.|+||||+||+|+||||++|+|+|+ . ++|++||.. +.|++|+|+|+|+||
T Consensus       744 ~NtG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~-~~l~~~d~~~~~~~~e~G~y~v~vG  822 (845)
T 3abz_A          744 KNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELK-DAISYFNEELGKWHVEAGEYLVSVG  822 (845)
T ss_dssp             EECCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEECTTCEEEEEEEEEHH-HHHCEEETTTTEEEECSEEEEEEEE
T ss_pred             EECCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEECCCCEEEEEEEeCCh-HHeeEEecCCCeEEEcCCEEEEEEE
Confidence            9999 999999999999999876 8999999999999999999999999999 8 999999996 789999999999999


Q ss_pred             CCCCeEEEEEEE
Q 007089          602 DLKHSISLQANL  613 (618)
Q Consensus       602 ~ss~~~~~~~~~  613 (618)
                      .||++++++..+
T Consensus       823 ~ss~di~l~~~~  834 (845)
T 3abz_A          823 TSSDDILSVKEF  834 (845)
T ss_dssp             SSTTCEEEEEEE
T ss_pred             CCCCCceeEEEE
Confidence            999999876544
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A* Back     alignment and structure
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A* Back     alignment and structure
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A Back     alignment and structure
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A* Back     alignment and structure
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A* Back     alignment and structure
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A* Back     alignment and structure
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A Back     alignment and structure
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A* Back     alignment and structure
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A* Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d1x38a1388 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-te 2e-27
d1x38a2214 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, 3e-24
d1tr9a_330 c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio chol 2e-08
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 388 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  112 bits (279), Expect = 2e-27
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 38/257 (14%)

Query: 11  YWSPNVNIFRDPRWGRGQETPGEDPVLTGKY-----------AASYVRGLQGNTGSRLKV 59
            ++P + + RDPRWGR  E+  ED  +                  +  G+    G   KV
Sbjct: 143 AFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKN-KV 201

Query: 60  AACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVN 119
           AAC KH+      +   VD  + N  +  ++     ++P     ++  V++VM SY+  N
Sbjct: 202 AACAKHFVG----DGGTVDGINENNTIINREGLMNIHMPAYKNAMDKGVSTVMISYSSWN 257

Query: 120 GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAAI--- 176
           G    A+ D++   +    +  G+++SD + +     T         +   +I A +   
Sbjct: 258 GVKMHANQDLVTGYLKDTLKFKGFVISDWEGID--RITTPAGSDYSYSVKASILAGLDMI 315

Query: 177 -----------HTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG-PR 224
                         G V GG++    ++ A+   + V+  +G+F+      P+ +     
Sbjct: 316 MVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-----NPYADPAMAE 370

Query: 225 DVCTPAHQQLALQAAHQ 241
            +    H+ LA +AA +
Sbjct: 371 QLGKQEHRDLAREAARK 387
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 214 Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1x38a1388 Beta-D-glucan exohydrolase, N-terminal domain {Bar 100.0
d1x38a2214 Beta-D-glucan exohydrolase, C-terminal domain {Bar 100.0
d1tr9a_330 Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 100.0
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 95.87
d2q3za2114 Transglutaminase, two C-terminal domains {Human (H 90.61
d2vzsa2122 Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato 89.21
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 88.91
d4ubpb_122 Urease, beta-subunit {Bacillus pasteurii [TaxId: 1 87.23
d1ex0a2112 Transglutaminase, two C-terminal domains {Human (H 86.48
d1vjja2115 Transglutaminase, two C-terminal domains {Human (H 83.97
d1e9ya1133 Urease, beta-subunit {Helicobacter pylori [TaxId: 83.29
d1g0da2112 Transglutaminase, two C-terminal domains {Red sea 81.72
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: NagZ-like
domain: Beta-D-glucan exohydrolase, N-terminal domain
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=4.4e-51  Score=436.86  Aligned_cols=224  Identities=26%  Similarity=0.467  Sum_probs=195.9

Q ss_pred             cceE-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHhcCCC-----------CCCeEEEeecccccccCCCCC
Q 007089            8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTG-----------SRLKVAACCKHYTAYDLDNWN   75 (618)
Q Consensus         8 Gi~~-laP~~di~r~p~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~~~-----------~~~~v~a~~KHF~g~g~~~~~   75 (618)
                      |+|+ |||++||.|||+|||++|||||||+|+++|+. +|.++|+...           +..||+||+|||||||.+.  
T Consensus       139 Gin~~~aPv~Dv~~~p~~gr~~et~geDp~l~~~~~~-~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~--  215 (388)
T d1x38a1         139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTV--  215 (388)
T ss_dssp             TCCEECCCBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCG--
T ss_pred             CCccccCCcccccccccccccccCccCCHHHHHHHHh-hhhhhhchhhhhhcccccccccccCcceeeeeeecCCccc--
Confidence            9999 99999999999999999999999999999965 7888887531           2348999999999998543  


Q ss_pred             CCCccccccccCHHHHHHhhcHHHHHHHHcCCCceEEecccCCCCcccccCHHHHHHHHHhhcCCCcEEEccchhhhhcc
Q 007089           76 GVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLY  155 (618)
Q Consensus        76 ~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~ViSD~~~~~~~~  155 (618)
                       .+++..++.+++++|+|.||+||+.+|++| +.+|||+||.+||+|+|.|+++|+++||++|||+|+|||||++|+++.
T Consensus       216 -~~~~~~~~~i~~~~l~~~~l~pf~~~i~~g-~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~  293 (388)
T d1x38a1         216 -DGINENNTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRIT  293 (388)
T ss_dssp             -GGCTTCEECCCHHHHHHHTSHHHHHHHHTT-CCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGS
T ss_pred             -cCccccccchhHHHHHHHhhhhhHHHHhhc-cccccccccccCCccccCCHHHHHHHHHhccCCCceeecchhhccccc
Confidence             234555678899999999999999999876 899999999999999999999999999999999999999999999886


Q ss_pred             ccccccCCHHHHHHHHHHH--------------HHHHHHHHHCCCCCHHHHHHHHhhhHHHHHHhCCCCCCCCCCCCCCC
Q 007089          156 NTQHYTRTPEEAAADAIKA--------------AIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNL  221 (618)
Q Consensus       156 ~~~~~~~~~~~a~~~al~a--------------~~~l~~av~~G~i~~~~ld~av~RiL~~k~~lGl~~~~p~~~~~~~~  221 (618)
                      ..  +.....+++.+++.|              .+.|.+||++|+|+++|||+||+|||++|+++|||| +|+.++.   
T Consensus       294 ~~--~~~~~~~~~~~a~~ag~d~~~~~~~~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd-~p~~~~~---  367 (388)
T d1x38a1         294 TP--AGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFE-NPYADPA---  367 (388)
T ss_dssp             SS--TTTTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTT-CCSCCGG---
T ss_pred             cc--cCCcHHHHHHHHHhcCCCeecCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCC-CCCCChh---
Confidence            43  334567788888887              577899999999999999999999999999999999 7765432   


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc
Q 007089          222 GPRDVCTPAHQQLALQAAHQG  242 (618)
Q Consensus       222 ~~~~~~~~~~~~la~~~A~es  242 (618)
                      ....+++++|+++|+++|+||
T Consensus       368 ~~~~i~~~~h~~~a~~aA~~S  388 (388)
T d1x38a1         368 MAEQLGKQEHRDLAREAARKS  388 (388)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHhcC
Confidence            124578999999999999997
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]} Back     information, alignment and structure
>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure