Citrus Sinensis ID: 007093

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLGNTVAPSTH
ccccHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccccccccccHHHHHHcccEEEEEccccccccccccEEEEEcccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHccccccccccccEEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHcccccEEEEcccccccEEEEcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHccccccccccccccc
ccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccHHHHHHHcHHHHHHcccEEEEEccccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccEEcccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEccccccEEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccHHHHHHHHHHHcHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHccccccccccccccc
MALNLRQKQTECITRMLnlnqpvnatgtaNEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFlidkdrkpvhdvpavYFVQASQQNIQRIIADASaslydsfhlnfsssiPRALLEDLAsgmlnsdsIQRISKVHDQYLDFVTLEDNLFSLAQKssyvqlndpkagdREIEEIIERIVNGLFCVLATlgvvpiircprsgpaEMVASALDQKLRDHLLsknnlfseggnfassfqrpilcifdrnfelsvgiqhdfryrplvhDVLGLKLNrlsvqgekggmksfeldsadpfwvangwlefPEVAVEIETQLNKYKKDVEEVnkrtggndgaefdgtdliGNTKHLMNAVnslpelterkqvIDKHTNIATVLLGEIKERSLDSYAKKENDmmirggidrselmgvlkgkgskmdKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLAsansasrnNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALvegrpnpeidsylmfdprapksssgsnhlkgpFKEAIVFMIGGGNYMEYGSLQElakrqqpvkhviygtteiltgDEFVEQLALLGQkmglgntvapsth
MALNLRQKQTECITRmlnlnqpvnatGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKdveevnkrtggndgaefdgtDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATvllgeikersldsyakkendmmirggidrselmgvlkgkgskmdKLRFAIIYLissetinqsEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVealvegrpnpeidsYLMFDPRAPKsssgsnhlkgpFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGqkmglgntvapsth
MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDreieeiieriVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKslnvslasansasrnnIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLGNTVAPSTH
***********CITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKK****************FDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSL**********MIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVE*****************************PFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGL*********
*ALNLRQKQTECITRMLNLNQP********EEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLID****PVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKN************FQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRL**************DSADPFWVANGWLEFPEVAVEIETQLNKY***************************TKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKS*************************QSISAVTAGVKNLLSNDRQLALTRTVEALV********************************KEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQL******************
MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPR********NHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLGNTVAPSTH
***NLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNN**********SFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVN*R************DLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSL*********NIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNP**DSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLG**************
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MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVANGWLEFPEVxxxxxxxxxxxxxxxxxxxxxTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLGNTVAPSTH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q9SL48627 SEC1 family transport pro yes no 0.998 0.984 0.811 0.0
Q851W1623 SEC1 family transport pro yes no 0.974 0.966 0.627 0.0
Q62991637 Sec1 family domain-contai yes no 0.972 0.943 0.400 1e-125
Q8BRF7639 Sec1 family domain-contai yes no 0.964 0.932 0.404 1e-125
Q8WVM8642 Sec1 family domain-contai yes no 0.964 0.928 0.394 1e-124
O74534639 Protein sly1 OS=Schizosac yes no 0.959 0.928 0.362 1e-116
O18637656 Protein sly1 homolog OS=D N/A no 0.967 0.911 0.383 1e-116
Q24179657 Protein sly1 homolog OS=D yes no 0.969 0.911 0.382 1e-115
Q54IJ1673 Sec1 family domain-contai yes no 0.969 0.890 0.372 1e-105
P22213666 Protein SLY1 OS=Saccharom yes no 0.922 0.855 0.343 1e-95
>sp|Q9SL48|SLY1_ARATH SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/622 (81%), Positives = 562/622 (90%), Gaps = 5/622 (0%)

Query: 1   MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHG 60
           MALNLRQKQTEC+ RMLNLNQP+N +GTANEEVYKILIYDRFCQNILSPL HVKDLRKHG
Sbjct: 1   MALNLRQKQTECVIRMLNLNQPLNPSGTANEEVYKILIYDRFCQNILSPLTHVKDLRKHG 60

Query: 61  VTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLED 120
           VTL+FLIDKDR+PVHDVPAVYFVQ ++ N+QRIIADAS SLYD+FHLNFSSSIPR  LE+
Sbjct: 61  VTLFFLIDKDRQPVHDVPAVYFVQPTESNLQRIIADASRSLYDTFHLNFSSSIPRKFLEE 120

Query: 121 LASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERI 180
           LASG L S S++++SKVHDQYL+FVTLEDNLFSLAQ+S+YVQ+NDP AG++EI EIIER+
Sbjct: 121 LASGTLKSGSVEKVSKVHDQYLEFVTLEDNLFSLAQQSTYVQMNDPSAGEKEINEIIERV 180

Query: 181 VNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRP 240
            +GLFCVL TLGVVP+IRCP  GPAEMVAS LDQKLRDHLLSKNNLF+EGG F SSFQRP
Sbjct: 181 ASGLFCVLVTLGVVPVIRCPSGGPAEMVASLLDQKLRDHLLSKNNLFTEGGGFMSSFQRP 240

Query: 241 ILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVAN 300
           +LCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLN+L VQGEKG  KSFELDS+DPFW AN
Sbjct: 241 LLCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNQLKVQGEKGPPKSFELDSSDPFWSAN 300

Query: 301 GWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGN--TKHLMNAVNSLP 358
             LEFP+VAVEIETQLNKYK+DVEEVNK+TGG  GAEFDGTDLIGN  T+HLMN V SLP
Sbjct: 301 STLEFPDVAVEIETQLNKYKRDVEEVNKKTGGGSGAEFDGTDLIGNIHTEHLMNTVKSLP 360

Query: 359 ELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKM 418
           ELTERK+VIDKHTNIAT LLG+IKERS+D++ KKE+DMM+RGGIDR+ELM  LKGKG+KM
Sbjct: 361 ELTERKKVIDKHTNIATALLGQIKERSIDAFTKKESDMMMRGGIDRTELMAALKGKGTKM 420

Query: 419 DKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLA--SANSAS 476
           DKLRFAI+YLIS+ETINQSEVEAVEAAL E+E D SAFQYVKKIKSLN S A  SANSAS
Sbjct: 421 DKLRFAIMYLISTETINQSEVEAVEAALNEAEADTSAFQYVKKIKSLNASFAATSANSAS 480

Query: 477 RNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPR 536
           R+NIVDWAEKLYGQSISAVTAGVKNLLS+D+QLA+TRTVEAL EG+PNPEIDSY   DPR
Sbjct: 481 RSNIVDWAEKLYGQSISAVTAGVKNLLSSDQQLAVTRTVEALTEGKPNPEIDSYRFLDPR 540

Query: 537 APK-SSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDE 595
           APK SSSG +H+KGPF+EAIVFMIGGGNY+EYGSLQEL +RQ  VK+VIYG TEIL G E
Sbjct: 541 APKSSSSGGSHVKGPFREAIVFMIGGGNYVEYGSLQELTQRQLTVKNVIYGATEILNGGE 600

Query: 596 FVEQLALLGQKMGLGNTVAPST 617
            VEQL LLG+KMGLG  VA ++
Sbjct: 601 LVEQLGLLGKKMGLGGPVASTS 622
May be involved in the early secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q851W1|SLY1_ORYSJ SEC1 family transport protein SLY1 OS=Oryza sativa subsp. japonica GN=SLY1 PE=2 SV=1 Back     alignment and function description
>sp|Q62991|SCFD1_RAT Sec1 family domain-containing protein 1 OS=Rattus norvegicus GN=Scfd1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BRF7|SCFD1_MOUSE Sec1 family domain-containing protein 1 OS=Mus musculus GN=Scfd1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WVM8|SCFD1_HUMAN Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4 Back     alignment and function description
>sp|O74534|SLY1_SCHPO Protein sly1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sly1 PE=3 SV=1 Back     alignment and function description
>sp|O18637|SLY1_DROVI Protein sly1 homolog OS=Drosophila virilis GN=Slh PE=3 SV=1 Back     alignment and function description
>sp|Q24179|SLY1_DROME Protein sly1 homolog OS=Drosophila melanogaster GN=Slh PE=2 SV=3 Back     alignment and function description
>sp|Q54IJ1|SCFD1_DICDI Sec1 family domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=scfd1 PE=3 SV=2 Back     alignment and function description
>sp|P22213|SLY1_YEAST Protein SLY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLY1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
224132414622 predicted protein [Populus trichocarpa] 0.995 0.988 0.883 0.0
225428141617 PREDICTED: SEC1 family transport protein 0.998 1.0 0.898 0.0
356512111622 PREDICTED: SEC1 family transport protein 0.998 0.991 0.872 0.0
147865724625 hypothetical protein VITISV_032133 [Viti 0.983 0.972 0.903 0.0
356524894622 PREDICTED: SEC1 family transport protein 0.998 0.991 0.864 0.0
224102809622 predicted protein [Populus trichocarpa] 0.993 0.987 0.871 0.0
358346113624 SEC1 family transport protein SLY1 [Medi 0.988 0.979 0.854 0.0
449454277618 PREDICTED: SEC1 family transport protein 0.995 0.995 0.826 0.0
449500172618 PREDICTED: SEC1 family transport protein 0.995 0.995 0.823 0.0
449445286624 PREDICTED: SEC1 family transport protein 0.995 0.985 0.867 0.0
>gi|224132414|ref|XP_002328263.1| predicted protein [Populus trichocarpa] gi|222837778|gb|EEE76143.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1144 bits (2958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/617 (88%), Positives = 588/617 (95%), Gaps = 2/617 (0%)

Query: 1   MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHG 60
           MALNLRQKQTECI RMLNLNQP+NATGT NEEVYKILIYD+FCQNILSPLIHVKDLRKHG
Sbjct: 1   MALNLRQKQTECIIRMLNLNQPLNATGTTNEEVYKILIYDKFCQNILSPLIHVKDLRKHG 60

Query: 61  VTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLED 120
           VTLYFLIDKDRKPVHDVPAVYFVQ S+ N+QRI+ADAS SLYDSFHLNFSSSIPR LLED
Sbjct: 61  VTLYFLIDKDRKPVHDVPAVYFVQPSKVNVQRIVADASQSLYDSFHLNFSSSIPRPLLED 120

Query: 121 LASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDREIEEIIERI 180
           LASG LNS+SI +ISKVHDQYL+FVTLE+NLFSLAQKS YVQLNDP AGDREIEEI+E++
Sbjct: 121 LASGTLNSESIDKISKVHDQYLEFVTLENNLFSLAQKSCYVQLNDPSAGDREIEEIVEKV 180

Query: 181 VNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRP 240
            +GLF VLATL VVP+IRCPR GPAEMVAS LDQKLRDHLLSKNNLF+EGG FASSFQRP
Sbjct: 181 ASGLFSVLATLAVVPVIRCPRGGPAEMVASVLDQKLRDHLLSKNNLFTEGGGFASSFQRP 240

Query: 241 ILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVAN 300
           +LC+FDRNFELSVGIQHDFRYRPLVHDVLGL+LNRLSVQGEKGGM+S+ELDS+DPFWVAN
Sbjct: 241 VLCLFDRNFELSVGIQHDFRYRPLVHDVLGLRLNRLSVQGEKGGMRSYELDSSDPFWVAN 300

Query: 301 GWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPEL 360
           G LEFPEVAVEIETQLNKYKKDV+EVN+RTG  DGAEFDGTDLIGNTKHLMNAVNSLPEL
Sbjct: 301 GSLEFPEVAVEIETQLNKYKKDVDEVNRRTGETDGAEFDGTDLIGNTKHLMNAVNSLPEL 360

Query: 361 TERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKMDK 420
           TERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMM+RGGIDR+EL+GVL+GKG+K+DK
Sbjct: 361 TERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGGIDRNELLGVLRGKGTKIDK 420

Query: 421 LRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLASANSASRNNI 480
           LRFAIIYLI SE+INQSEVEA+E ALRESEVD  AFQYVKK+KSLNVSLASANSASR+NI
Sbjct: 421 LRFAIIYLICSESINQSEVEAIETALRESEVDNCAFQYVKKMKSLNVSLASANSASRSNI 480

Query: 481 VDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKS 540
           VDWAEKLYGQSISAVTAGVKNLLS+DRQLALTRTVEAL+EG+PNPE+DSYL+FDPRAPKS
Sbjct: 481 VDWAEKLYGQSISAVTAGVKNLLSSDRQLALTRTVEALMEGKPNPEVDSYLVFDPRAPKS 540

Query: 541 SSG--SNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVE 598
            SG  S+HLKGPFKEAIVFMIGGGNYMEYGSLQE A+RQQPVKHVIYGTTEILTG EFVE
Sbjct: 541 GSGTSSSHLKGPFKEAIVFMIGGGNYMEYGSLQEFAQRQQPVKHVIYGTTEILTGMEFVE 600

Query: 599 QLALLGQKMGLGNTVAP 615
           QL +LGQKMGLG++VAP
Sbjct: 601 QLTVLGQKMGLGSSVAP 617

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428141|ref|XP_002278576.1| PREDICTED: SEC1 family transport protein SLY1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512111|ref|XP_003524764.1| PREDICTED: SEC1 family transport protein SLY1-like [Glycine max] Back     alignment and taxonomy information
>gi|147865724|emb|CAN83258.1| hypothetical protein VITISV_032133 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524894|ref|XP_003531063.1| PREDICTED: SEC1 family transport protein SLY1-like [Glycine max] Back     alignment and taxonomy information
>gi|224102809|ref|XP_002312809.1| predicted protein [Populus trichocarpa] gi|222849217|gb|EEE86764.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358346113|ref|XP_003637116.1| SEC1 family transport protein SLY1 [Medicago truncatula] gi|355503051|gb|AES84254.1| SEC1 family transport protein SLY1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449454277|ref|XP_004144882.1| PREDICTED: SEC1 family transport protein SLY1-like [Cucumis sativus] gi|449473226|ref|XP_004153823.1| PREDICTED: SEC1 family transport protein SLY1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449500172|ref|XP_004161024.1| PREDICTED: SEC1 family transport protein SLY1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445286|ref|XP_004140404.1| PREDICTED: SEC1 family transport protein SLY1-like [Cucumis sativus] gi|449487885|ref|XP_004157849.1| PREDICTED: SEC1 family transport protein SLY1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2060954627 ATSLY1 [Arabidopsis thaliana ( 0.998 0.984 0.779 1.4e-259
ZFIN|ZDB-GENE-030116-3632 sly1 "suppressor of ypt1" [Dan 0.462 0.452 0.462 2.1e-126
RGD|619828637 Scfd1 "sec1 family domain cont 0.456 0.442 0.448 1.7e-124
UNIPROTKB|Q62991637 Scfd1 "Sec1 family domain-cont 0.456 0.442 0.448 1.7e-124
UNIPROTKB|E1BG76641 SCFD1 "Uncharacterized protein 0.459 0.443 0.453 2.1e-124
MGI|MGI:1924233639 Scfd1 "Sec1 family domain cont 0.451 0.436 0.449 5.7e-124
UNIPROTKB|Q8WVM8642 SCFD1 "Sec1 family domain-cont 0.456 0.439 0.454 1.5e-123
UNIPROTKB|F1PLS0635 SCFD1 "Uncharacterized protein 0.459 0.447 0.447 3.1e-123
UNIPROTKB|F1NH65634 SCFD1 "Uncharacterized protein 0.453 0.441 0.455 8.2e-123
UNIPROTKB|E2RN28617 SCFD1 "Uncharacterized protein 0.436 0.437 0.451 2.2e-120
TAIR|locus:2060954 ATSLY1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2498 (884.4 bits), Expect = 1.4e-259, P = 1.4e-259
 Identities = 485/622 (77%), Positives = 539/622 (86%)

Query:     1 MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHG 60
             MALNLRQKQTEC+ RMLNLNQP+N +GTANEEVYKILIYDRFCQNILSPL HVKDLRKHG
Sbjct:     1 MALNLRQKQTECVIRMLNLNQPLNPSGTANEEVYKILIYDRFCQNILSPLTHVKDLRKHG 60

Query:    61 VTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLED 120
             VTL+FLIDKDR+PVHDVPAVYFVQ ++ N+QRIIADAS SLYD+FHLNFSSSIPR  LE+
Sbjct:    61 VTLFFLIDKDRQPVHDVPAVYFVQPTESNLQRIIADASRSLYDTFHLNFSSSIPRKFLEE 120

Query:   121 LASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDXXXXXXXXXX 180
             LASG L S S++++SKVHDQYL+FVTLEDNLFSLAQ+S+YVQ+NDP AG+          
Sbjct:   121 LASGTLKSGSVEKVSKVHDQYLEFVTLEDNLFSLAQQSTYVQMNDPSAGEKEINEIIERV 180

Query:   181 VNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGNFASSFQRP 240
              +GLFCVL TLGVVP+IRCP  GPAEMVAS LDQKLRDHLLSKNNLF+EGG F SSFQRP
Sbjct:   181 ASGLFCVLVTLGVVPVIRCPSGGPAEMVASLLDQKLRDHLLSKNNLFTEGGGFMSSFQRP 240

Query:   241 ILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSFELDSADPFWVAN 300
             +LCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLN+L VQGEKG  KSFELDS+DPFW AN
Sbjct:   241 LLCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNQLKVQGEKGPPKSFELDSSDPFWSAN 300

Query:   301 GWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGN--TKHLMNAVNSLP 358
               LEFP+VAVEIETQLNKYK+DVEEVNK+TGG  GAEFDGTDLIGN  T+HLMN V SLP
Sbjct:   301 STLEFPDVAVEIETQLNKYKRDVEEVNKKTGGGSGAEFDGTDLIGNIHTEHLMNTVKSLP 360

Query:   359 ELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKGKGSKM 418
             ELTERK+VIDKHTNIAT LLG+IKERS+D++ KKE+DMM+RGGIDR+ELM  LKGKG+KM
Sbjct:   361 ELTERKKVIDKHTNIATALLGQIKERSIDAFTKKESDMMMRGGIDRTELMAALKGKGTKM 420

Query:   419 DKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKX--XXXXXXXXXXXX 476
             DKLRFAI+YLIS+ETINQSEVEAVEAAL E+E D SAFQYVKKIK               
Sbjct:   421 DKLRFAIMYLISTETINQSEVEAVEAALNEAEADTSAFQYVKKIKSLNASFAATSANSAS 480

Query:   477 XXXIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPR 536
                IVDWAEKLYGQSISAVTAGVKNLLS+D+QLA+TRTVEAL EG+PNPEIDSY   DPR
Sbjct:   481 RSNIVDWAEKLYGQSISAVTAGVKNLLSSDQQLAVTRTVEALTEGKPNPEIDSYRFLDPR 540

Query:   537 APKSSS-GSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDE 595
             APKSSS G +H+KGPF+EAIVFMIGGGNY+EYGSLQEL +RQ  VK+VIYG TEIL G E
Sbjct:   541 APKSSSSGGSHVKGPFREAIVFMIGGGNYVEYGSLQELTQRQLTVKNVIYGATEILNGGE 600

Query:   596 FVEQLALLGQKMGLGNTVAPST 617
              VEQL LLG+KMGLG  VA ++
Sbjct:   601 LVEQLGLLGKKMGLGGPVASTS 622
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
ZFIN|ZDB-GENE-030116-3 sly1 "suppressor of ypt1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|619828 Scfd1 "sec1 family domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q62991 Scfd1 "Sec1 family domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BG76 SCFD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1924233 Scfd1 "Sec1 family domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WVM8 SCFD1 "Sec1 family domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLS0 SCFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH65 SCFD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RN28 SCFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P22213SLY1_YEASTNo assigned EC number0.34310.92230.8558yesno
O74534SLY1_SCHPONo assigned EC number0.36260.95950.9280yesno
Q54IJ1SCFD1_DICDINo assigned EC number0.37230.96920.8900yesno
Q8WVM8SCFD1_HUMANNo assigned EC number0.39460.96440.9283yesno
Q62991SCFD1_RATNo assigned EC number0.40030.97240.9434yesno
Q24179SLY1_DROMENo assigned EC number0.38210.96920.9117yesno
Q9SL48SLY1_ARATHNo assigned EC number0.81180.99830.9840yesno
Q851W1SLY1_ORYSJNo assigned EC number0.62700.97410.9662yesno
Q8BRF7SCFD1_MOUSENo assigned EC number0.40400.96440.9327yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00660185
hypothetical protein (622 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
pfam00995554 pfam00995, Sec1, Sec1 family 1e-161
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 3e-97
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  473 bits (1220), Expect = e-161
 Identities = 188/584 (32%), Positives = 312/584 (53%), Gaps = 47/584 (8%)

Query: 34  YKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRI 93
           +K+L+ D+    ILS ++ V DL +HGVTL   I+  R+P+ D+PA+YF++ +++N+ RI
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRI 60

Query: 94  IADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFS 153
           I D     Y S+H+ F++S+ R+LLE LA     +D  + + +V + YLDF+ LE +LFS
Sbjct: 61  IDDLKNPKYKSYHIFFTNSLSRSLLERLAE----ADVAELVKQVKEIYLDFIPLESDLFS 116

Query: 154 LAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALD 213
           L   +S+  L  P       E  +ERI  GLF +L TLG +PIIR   +  AE +A  L 
Sbjct: 117 LELPNSFRDLYSP----DGDESDLERIAEGLFSLLLTLGEIPIIRYQGNSAAERLAEKLA 172

Query: 214 QKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKL 273
           Q L+++L   +   ++  +   S  RP+L I DR+ +L   + H + Y+ +VHD+LG+K 
Sbjct: 173 QLLQENL---DLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDLLGIKN 229

Query: 274 NRLSVQGEKGG---MKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRT 330
           NR+++     G    K   LD  DPFWV N  L FP+VA +I+ +L +YK++ +  NK+ 
Sbjct: 230 NRVTLDTPGNGGESKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEENKNSNKK- 288

Query: 331 GGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYA 390
                          +   L   V  LPE  + K  +  H N+A  L+ +IKER LD  +
Sbjct: 289 -------------KKSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVS 335

Query: 391 KKENDMMIRGGIDRS--ELMGVLKG-KGSKMDKLRFAIIYLISSETINQSEVEAVEAALR 447
           + E D+      D+   +++ +L   K    DKLR  ++Y +  +     ++E +   L 
Sbjct: 336 ELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSL-RDGGKGKDLEDLRKLLL 394

Query: 448 ESEVDISAFQYVKKIKSLNVSLASANSASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDR 507
            + +   A   VK ++ L   L+  + ++ +++ D  + L  +   ++  GVKN+LS   
Sbjct: 395 HAGIGPEALNLVKNLEQLGGLLSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLS-RY 453

Query: 508 QLALTRTVEALVEGRPNPEIDSYLMFDPRA-----------PKSSSGSNHLKGPFKEAIV 556
           +  L R +E L++G+ +   DSY  FDP+             K  + +   + P +  IV
Sbjct: 454 KPLLKRILEDLIKGKLDT--DSYPYFDPKLANASGPQGSLRSKRPTAAGQGRQPPQRIIV 511

Query: 557 FMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQL 600
           F++GG  Y E  +L EL+K+    + VI G+T IL  + F+E+L
Sbjct: 512 FVVGGVTYSEARALYELSKKTNGKR-VIIGSTSILNPESFLEEL 554

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4e-107  Score=833.54  Aligned_cols=606  Identities=51%  Similarity=0.821  Sum_probs=548.1

Q ss_pred             CcchHHHHHHHHHHHHhccCCCCCCCCCCCCcceEEEEEccccccccccccChHHHhhcccceeecccCCCCCCCCCCEE
Q 007093            1 MALNLRQKQTECITRMLNLNQPVNATGTANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAV   80 (618)
Q Consensus         1 ~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aI   80 (618)
                      |+.|||+.|-.+|.+||++++|++.......+-|||||+|..+..+||++++++||++||||++..|.+.|+|+|+++||
T Consensus         8 ~~~slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPAV   87 (621)
T KOG1301|consen    8 AAASLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPAV   87 (621)
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCeE
Confidence            57899999999999999999998776666689999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCHHHHHHHHHHhhcCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCeEEecCCCcc
Q 007093           81 YFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSY  160 (618)
Q Consensus        81 y~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~lfsl~~~~~f  160 (618)
                      |||+||.||+++|++|+++..|.+||++|++++++..+|.||....+.|....|.+|++.++||+.+|+|+|+|.++++|
T Consensus        88 YFV~Pt~eNid~i~~Dl~~~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~~~~  167 (621)
T KOG1301|consen   88 YFVSPTEENIDRIIQDLSKGLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQNSF  167 (621)
T ss_pred             EEeCCchHhHHHHHHHHHHhhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhcccccc
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             ccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCchHHHHHHHHHHHHHHHh-hcCCCCCCCCCCCCCCCC
Q 007093          161 VQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLL-SKNNLFSEGGNFASSFQR  239 (618)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~a~~va~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~  239 (618)
                      ..+++|+..+.+++..+++||++||++|.++|.+|.|||.+|++|++||++|.+||++++. ..+++|...+.+ ...+|
T Consensus       168 ~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~aAEmvA~kL~qKLRd~l~d~k~~lft~~~~~-~~~~R  246 (621)
T KOG1301|consen  168 HAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGGAAEMVARKLDQKLRDNLRDTKNNLFTMDGGG-AGFQR  246 (621)
T ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCCHHHHHHHHHHHHHHHHhHhhcccceeccCcc-cCCCC
Confidence            9999999999899999999999999999999999999999999999999999999999987 456666654322 23689


Q ss_pred             ceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC--CceeEEecCCCChhHHhccCCCHHHHHHHHHHHHH
Q 007093          240 PILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK--GGMKSFELDSADPFWVANGWLEFPEVAVEIETQLN  317 (618)
Q Consensus       240 ~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~--~~~~~~~L~~~D~l~~~~R~~~i~~v~~~l~~~~~  317 (618)
                      |.|+|+||++|++||+-|.||||||+||+|+++.|.|+++.++  +.+|.++|+.+|+||..+.+..|++|++.+.+++.
T Consensus       247 PvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~~~~~~k~yDld~~D~fW~~n~~~pFP~VAE~Ve~eL~  326 (621)
T KOG1301|consen  247 PVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESESKRKKKKSYDLDPNDKFWRRNKGSPFPEVAENVEEELE  326 (621)
T ss_pred             ceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccccCCCCccccCCCccHHHHhcCCCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998876  55789999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Q 007093          318 KYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMM  397 (618)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~  397 (618)
                      +|+++.++++++.|.++.++...+. ..+...+.++|+.||++.++++.+++|++||.++++.+++|+++.++++|++++
T Consensus       327 ~Yk~~~~ei~r~~G~sg~~e~~~~~-~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~IkeR~lD~ff~~E~~~~  405 (621)
T KOG1301|consen  327 SYKNEEAEIKRKMGLSGEDEGAIDE-LNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIKERKLDDFFEVEKKIM  405 (621)
T ss_pred             HHHhhHHHHHhhcCCCccccccccc-ccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhcccc
Confidence            9999999999987776555444433 445559999999999999999999999999999999999999999999999998


Q ss_pred             hcCCCChHHHHHHh-c-cCCCchhHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCCchhHHHHHHHHHhhhhhcc--cC
Q 007093          398 IRGGIDRSELMGVL-K-GKGSKMDKLRFAIIYLISSETINQSEVEAVEAALRESEVDISAFQYVKKIKSLNVSLAS--AN  473 (618)
Q Consensus       398 ~g~~~~~~~i~~~l-~-~~~~~~d~LRLl~L~~l~~~g~~~~~~~~l~~~l~~~g~~~~~~~~l~~l~~l~~~~~~--~~  473 (618)
                      + ...+ ..+++++ . ...+++||||++++|.++...+++.++++++..+.+.|++..+++|+++++.+..+...  +.
T Consensus       406 ~-~~l~-~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~et~~~s~le~~e~al~e~~~d~~Al~yvkr~k~~~~~~s~~~~~  483 (621)
T KOG1301|consen  406 S-TTLD-RSLLDILEDGEAGTPEDKLRLFIIYYLSTETVPQSDLEAVENALTEAGCDLNALKYVKRLKEITKMSSATSAY  483 (621)
T ss_pred             c-cccc-HHHHHHHhcccCCChHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccccc
Confidence            8 3344 3555555 3 57899999999999999999999999999999999999999999999999988755432  12


Q ss_pred             CCCCCchhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCC-CCCCCCCCc
Q 007093          474 SASRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALVEGRPNPEIDSYLMFDPRAPKSSSG-SNHLKGPFK  552 (618)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~~~~l~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~  552 (618)
                      ....+.+..++++++.++.+.+.+||+|++|.++.-+++|+||.+++++.++++++|.|+||+..++++. ....+++.+
T Consensus       484 ~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~~DPk~~k~~~~~~~~~r~~f~  563 (621)
T KOG1301|consen  484 SGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLYFDPKLSKGGSSSLPIKRQPFQ  563 (621)
T ss_pred             cCCcccHHHHHHHHhhccHHHHHhhHHhcCcccccCcHHHHHHHhhCCCCCccccceEeeccccccCCCccccccccchh
Confidence            2235567788889999999999999999999999999999999999988777778899999998876432 123567789


Q ss_pred             eEEEEEEcCccHHhhHHHHHHHHhcCCCceEEEccccccChHHHHHHHHhhcccCCCC
Q 007093          553 EAIVFMIGGGNYMEYGSLQELAKRQQPVKHVIYGTTEILTGDEFVEQLALLGQKMGLG  610 (618)
Q Consensus       553 ~viVf~iGGvTy~Ei~al~~l~~~~~~~~~iiigsT~i~n~~~fl~~l~~l~~~~~~~  610 (618)
                      +.|||||||++|-||..|.+|+++.+..++||||+|+|+||.+|++++..|+.++.++
T Consensus       564 eaIVFvVGGGNYiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~~~~~  621 (621)
T KOG1301|consen  564 EAIVFVVGGGNYIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLKMGSN  621 (621)
T ss_pred             heEEEEEcCcCeeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhcccccCC
Confidence            9999999999999999999999886667899999999999999999999999987653

>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 4e-91
1y9j_A159 Solution Structure Of The Rat Sly1 N-Terminal Domai 3e-33
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 1e-15
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 1e-14
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 2e-14
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 3e-14
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 9e-14
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 8e-11
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure 
Iteration: 1

 Score =  332 bits (851), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 206/611 (33%), Positives = 329/611 (53%), Gaps = 40/611 (6%)
Query: 31  EEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNI 90
           E ++K+LI D      +S ++ V DL K G+T++ LI +DR P+ DVPA+YFV  +++NI
Sbjct: 55  EIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENI 114
Query: 91  QRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN 150
             I+ D  +  Y  F++NF+SS+PR LLEDLA  +  +    +I +V+DQYLDF+  E  
Sbjct: 115 DIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPE 174
Query: 151 LFSLAQKSSYVQLNDPKAGDXXXXXXXXXXVNGLFCVLATLGVVPIIRCPRSGPAEMVAS 210
           LFSL   ++Y+ LNDPK  +           +GLF  + T+  +PIIR  + GPAE++A 
Sbjct: 175 LFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAE 234
Query: 211 ALDQKLRDHLLSKNNLFSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLG 270
            L  KLRD +++ N+  +       S +R +L I DRN + +    H + Y+  V D+  
Sbjct: 235 KLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASXFSHSWIYQCXVFDIFK 294
Query: 271 LKLNRLSV---QGEKG---------GMKSFELDSADPFWVANGWLEFPEVAVEIETQLNK 318
           L  N +++     E G           K ++++  D FW  N  L FPE A  +E  LN 
Sbjct: 295 LSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWXENSHLPFPEAAENVEAALNT 354
Query: 319 YKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLL 378
           YK++  E+ ++TG  + ++ D      +T  +   V  LPELT +K  ID H NI   LL
Sbjct: 355 YKEEAAEITRKTGVTNISDLDPNS-NNDTVQIQEVVKKLPELTAKKNTIDTHXNIFAALL 413
Query: 379 GEIKERSLDSYAKKENDMMIRGGIDRSELMGVLK-GKGSKM-DKLR-FAIIYLISSETIN 435
            +++ +SLD++ + E D        RS  + +LK GK + + DKLR F ++YL S+  + 
Sbjct: 414 SQLESKSLDTFFEVEQDP--GSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLP 471
Query: 436 QSEVEAVEAALRESEVDISAFQYVKKIKXXXXXXXXXXXXXXXXI-VDWAEK-------- 486
           +  V+ VE   +E++ DI+A +YV K++                   D A K        
Sbjct: 472 KDFVQNVENYFKENDYDINALKYVYKLREFXQLSNXSLQNKSLEDGSDSAFKPSNLTLSG 531
Query: 487 LYGQS-------ISAVTAGVKNLLSNDRQLALTRTVEALVE----GRPNPE-IDSYLMFD 534
           +YG +       + ++ +G+K LL   + + +T  V+A+ +     + N E  DSYL  D
Sbjct: 532 IYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIXDPLNSSQKNLETTDSYLYID 591
Query: 535 PRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQ-QPVKHVIYGTTEILTG 593
           P+  + S      +  + +++VF++GGGNY+EY +LQE A  Q    K V YG+T I T 
Sbjct: 592 PKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVXYGSTAITTP 651
Query: 594 DEFVEQLALLG 604
            EF+ +++ LG
Sbjct: 652 AEFLNEISRLG 662
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 1e-140
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 1e-111
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-107
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 1e-107
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 1e-106
1y9j_A159 SEC1 family domain containing protein 1; membrane 1e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
 Score =  423 bits (1087), Expect = e-140
 Identities = 208/652 (31%), Positives = 343/652 (52%), Gaps = 50/652 (7%)

Query: 1   MALNLRQKQTECITRMLNLNQPVNATGTAN----------EEVYKILIYDRFCQNILSPL 50
             ++LR  Q   I +ML LN+ +N                E ++K+LI D      +S +
Sbjct: 15  KDISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSV 74

Query: 51  IHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFS 110
           + V DL K G+T++ LI +DR P+ DVPA+YFV  +++NI  I+ D  +  Y  F++NF+
Sbjct: 75  LRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFT 134

Query: 111 SSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGD 170
           SS+PR LLEDLA  +  +    +I +V+DQYLDF+  E  LFSL   ++Y+ LNDPK  +
Sbjct: 135 SSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTTE 194

Query: 171 REIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEG 230
            EI  +   I +GLF  + T+  +PIIR  + GPAE++A  L  KLRD +++ N+  +  
Sbjct: 195 EEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTST 254

Query: 231 GNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSV------------ 278
                S +R +L I DRN + +    H + Y+ +V D+  L  N +++            
Sbjct: 255 LQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNT 314

Query: 279 QGEKGGMKSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEF 338
             +    K ++++  D FW+ N  L FPE A  +E  LN YK++  E+ ++TG  + ++ 
Sbjct: 315 TAKPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDL 374

Query: 339 DGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMI 398
           D  +   +T  +   V  LPELT +K  ID H NI   LL +++ +SLD++ + E D   
Sbjct: 375 D-PNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG- 432

Query: 399 RGGIDRSELMGVLK--GKGSKMDKLRFAII-YLISSETINQSEVEAVEAALRESEVDISA 455
                RS  + +LK     +  DKLR  I+ YL S+  + +  V+ VE   +E++ DI+A
Sbjct: 433 -STKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINA 491

Query: 456 FQYVKKIKSLNV----------------SLASANSASRNNIVDWAEKLYGQSISAVTAGV 499
            +YV K++                    S    ++ + + I    E      + ++ +G+
Sbjct: 492 LKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGI 551

Query: 500 KNLLSNDRQLALTRTVEALVE-----GRPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEA 554
           K LL   + + +T  V+A+++      +     DSYL  DP+  + S      +  + ++
Sbjct: 552 KKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKS 611

Query: 555 IVFMIGGGNYMEYGSLQELAKRQQ-PVKHVIYGTTEILTGDEFVEQLALLGQ 605
           +VF++GGGNY+EY +LQE A  Q    K V+YG+T I T  EF+ +++ LG 
Sbjct: 612 LVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGA 663
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.97
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
Probab=100.00  E-value=5.7e-107  Score=923.61  Aligned_cols=608  Identities=35%  Similarity=0.592  Sum_probs=491.9

Q ss_pred             cchHHHHHHHHHHHHhccCCCCCCC-CCC---------CCcceEEEEEccccccccccccChHHHhhcccceeecccCCC
Q 007093            2 ALNLRQKQTECITRMLNLNQPVNAT-GTA---------NEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDR   71 (618)
Q Consensus         2 ~~~l~~~~~~~l~~~l~~~~~~~~~-~~~---------~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r   71 (618)
                      ..|||++|+++|.+||+++++.... ...         ..++|||||+|+.++++||++|++++|+++||++++.|+.+|
T Consensus        16 ~~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~r   95 (671)
T 1mqs_A           16 DISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDR   95 (671)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSCC
T ss_pred             cccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCCC
Confidence            4689999999999999998752111 111         368999999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEEEccCHHHHHHHHHHhhcCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCCe
Q 007093           72 KPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNL  151 (618)
Q Consensus        72 ~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~l  151 (618)
                      +|+|+++|||||+|+.+||++|++|+++++|++|||+|++.+|+.++++||+...++++.+.|.+|.|+++||+|+|+|+
T Consensus        96 ~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple~dl  175 (671)
T 1mqs_A           96 SPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPEL  175 (671)
T ss_dssp             CCEEEEEEEEEECSCHHHHHHHHHHHHHTCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTTE
T ss_pred             CCCCCceEEEEeCCCHHHHHHHHHHhhhcccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeeccCCE
Confidence            99999999999999999999999999999999999999999999999999986555789999989999999999999999


Q ss_pred             EEecCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCchHHHHHHHHHHHHHHHhhcC-CCCCCC
Q 007093          152 FSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKN-NLFSEG  230 (618)
Q Consensus       152 fsl~~~~~f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~a~~va~~l~~~l~~~~~~~~-~~~~~~  230 (618)
                      |||++|++|..+|.+.+|+...++.++++|++|+++|.++|.+|.|||++|+.|++||++|+++++++..... ++|+..
T Consensus       176 fsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~~a~~va~~L~~~l~~~~~~~~~~lf~~~  255 (671)
T 1mqs_A          176 FSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTSTL  255 (671)
T ss_dssp             EECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred             EEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCChHHHHHHHHHHHHHHHHhhccccccccc
Confidence            9999999999999988777667789999999999999999999999999999999999999999998865432 445332


Q ss_pred             CCCCCCCCCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC------------CceeEEecCCCChhHH
Q 007093          231 GNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK------------GGMKSFELDSADPFWV  298 (618)
Q Consensus       231 ~~~~~~~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~------------~~~~~~~L~~~D~l~~  298 (618)
                      .. ..+.++++|||+||++|++|||+||||||||+||+|||++|+|+++...            .+++++.|+++|++|+
T Consensus       256 ~~-~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L~~~D~~w~  334 (671)
T 1mqs_A          256 QG-NDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWM  334 (671)
T ss_dssp             -------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCCSSCTTHH
T ss_pred             cC-CCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEecCCCCHHHH
Confidence            10 1235789999999999999999999999999999999999999997531            2247899999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 007093          299 ANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLL  378 (618)
Q Consensus       299 ~~R~~~i~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~  378 (618)
                      ++||+||++|++.|.+++++|+++++++++.++..+.+++|+. ..+++++|++||++||+|+++++.+++|++||++|+
T Consensus       335 ~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~  413 (671)
T 1mqs_A          335 ENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPN-SNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALL  413 (671)
T ss_dssp             HHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCccccccc-ccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887765543332222221 246799999999999999999999999999999999


Q ss_pred             HHhhhhhhhHHHHHHHhhhhcCCCChHHHHHHhcc--CCCchhHHHHHHHHHHhcC-CCChHHHHHHHHHHHhCCCCchh
Q 007093          379 GEIKERSLDSYAKKENDMMIRGGIDRSELMGVLKG--KGSKMDKLRFAIIYLISSE-TINQSEVEAVEAALRESEVDISA  455 (618)
Q Consensus       379 ~~~~~~~l~~~~~~Eq~i~~g~~~~~~~i~~~l~~--~~~~~d~LRLl~L~~l~~~-g~~~~~~~~l~~~l~~~g~~~~~  455 (618)
                      +.+++++|++++++||+|+.+  .+.++++++|..  ..++.|||||+|||+++++ |+++++++.+++.++.+|++...
T Consensus       414 ~~i~~~~l~~~~e~EQ~l~~~--~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~~l~~~G~~~~~  491 (671)
T 1mqs_A          414 SQLESKSLDTFFEVEQDPGST--KTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINA  491 (671)
T ss_dssp             HHHHTTTCHHHHHHTSCCSSH--HHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHhHhhHHHHHHHHHHHhcC--chHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence            999999999999999999732  236789999964  4599999999999999999 99999999999988999998778


Q ss_pred             HHHHHHHHHhhhhh--cc-cC-------CC------CCCchhhhhHHhhcccchhhhhcccccccccccchHHHHHHHHH
Q 007093          456 FQYVKKIKSLNVSL--AS-AN-------SA------SRNNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTVEALV  519 (618)
Q Consensus       456 ~~~l~~l~~l~~~~--~~-~~-------~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlve~l~  519 (618)
                      +.++.++..++...  .. ..       ..      ..+....+.++.+..+.+.+.+|+++++|..+.|+++++||.++
T Consensus       492 ~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~r~~~~~~~~g~~~~~~~v~n~~P~~~~~~l~~ive~l~  571 (671)
T 1mqs_A          492 LKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIM  571 (671)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCC------------------CHHHHHTTTSSCSSSHHHHHHTCCCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccccccccccccccccccccccccHHHHHHHHhccchhhHHHhHHhhCCCcccchHHHHHHHHH
Confidence            88888887765432  10 00       00      01112234444554344455678999999999999999999999


Q ss_pred             cCCCCC-----CCCcccccCCCCCCCCCCCCCCCCCCceEEEEEEcCccHHhhHHHHHHHHhc-CCCceEEEccccccCh
Q 007093          520 EGRPNP-----EIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQ-QPVKHVIYGTTEILTG  593 (618)
Q Consensus       520 ~~~l~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~-~~~~~iiigsT~i~n~  593 (618)
                      ++....     ..++|||++|+....+...++.+++++++|||||||+||+|+++||+|+++. ..+++|+||||+|+||
T Consensus       572 ~~~~~~~k~~l~~~~y~~~~p~~~~~~~~~~~~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~  651 (671)
T 1mqs_A          572 DPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTP  651 (671)
T ss_dssp             CSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCH
T ss_pred             hccccccccCCCccCceeeCCCCcCCCCCCCcccCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeeccccCH
Confidence            983211     1479999988643211111123456789999999999999999999999763 2479999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCC
Q 007093          594 DEFVEQLALLGQKMGLGNTV  613 (618)
Q Consensus       594 ~~fl~~l~~l~~~~~~~~~~  613 (618)
                      ++||++|..|++.....|++
T Consensus       652 ~~Fl~~l~~l~~~~~~~~~~  671 (671)
T 1mqs_A          652 AEFLNEISRLGASNSSNNDA  671 (671)
T ss_dssp             HHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHhCcccccCCCC
Confidence            99999999999987766654
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-168
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-122
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-120
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  492 bits (1267), Expect = e-168
 Identities = 207/647 (31%), Positives = 341/647 (52%), Gaps = 46/647 (7%)

Query: 3   LNLRQKQTECITRMLNLNQPVNATGTAN----------EEVYKILIYDRFCQNILSPLIH 52
           ++LR  Q   I +ML LN+ +N                E ++K+LI D      +S ++ 
Sbjct: 3   ISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLR 62

Query: 53  VKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSS 112
           V DL K G+T++ LI +DR P+ DVPA+YFV  +++NI  I+ D  +  Y  F++NF+SS
Sbjct: 63  VNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSS 122

Query: 113 IPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDNLFSLAQKSSYVQLNDPKAGDRE 172
           +PR LLEDLA  +  +    +I +V+DQYLDF+  E  LFSL   ++Y+ LNDPK  + E
Sbjct: 123 LPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEISNAYLTLNDPKTTEEE 182

Query: 173 IEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKNNLFSEGGN 232
           I  +   I +GLF  + T+  +PIIR  + GPAE++A  L  KLRD +++ N+  +    
Sbjct: 183 ITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTSTLQ 242

Query: 233 FASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGM------- 285
              S +R +L I DRN + +    H + Y+ +V D+  L  N +++  E           
Sbjct: 243 GNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTA 302

Query: 286 -----KSFELDSADPFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDG 340
                K ++++  D FW+ N  L FPE A  +E  LN YK++  E+ ++TG  + ++ D 
Sbjct: 303 KPLATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLD- 361

Query: 341 TDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRG 400
            +   +T  +   V  LPELT +K  ID H NI   LL +++ +SLD++ + E D     
Sbjct: 362 PNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPGSTK 421

Query: 401 GIDRSELMGVLKGKGSKMDKLRFAIIYLISSET-INQSEVEAVEAALRESEVDISAFQYV 459
              R   +       +  DKLR  I+  ++S T + +  V+ VE   +E++ DI+A +YV
Sbjct: 422 TRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINALKYV 481

Query: 460 KKIKSL----NVSLASANSASR------------NNIVDWAEKLYGQSISAVTAGVKNLL 503
            K++      N+SL + +                + I    E      + ++ +G+K LL
Sbjct: 482 YKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLL 541

Query: 504 SNDRQLALTRTVEALVEG-----RPNPEIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFM 558
              + + +T  V+A+++      +     DSYL  DP+  + S      +  + +++VF+
Sbjct: 542 PEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFV 601

Query: 559 IGGGNYMEYGSLQELAKRQQ-PVKHVIYGTTEILTGDEFVEQLALLG 604
           +GGGNY+EY +LQE A  Q    K V+YG+T I T  EF+ +++ LG
Sbjct: 602 VGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLG 648
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-100  Score=869.54  Aligned_cols=600  Identities=35%  Similarity=0.598  Sum_probs=485.0

Q ss_pred             CcchHHHHHHHHHHHHhccCCCCCCCCC----------CCCcceEEEEEccccccccccccChHHHhhcccceeecccCC
Q 007093            1 MALNLRQKQTECITRMLNLNQPVNATGT----------ANEEVYKILIYDRFCQNILSPLIHVKDLRKHGVTLYFLIDKD   70 (618)
Q Consensus         1 ~~~~l~~~~~~~l~~~l~~~~~~~~~~~----------~~~~~~KvLIlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~   70 (618)
                      ++.+||+.|++++.+||++++|+++++.          .+.+.|||||+|+.+.+|||++|++++|+++||++|+.|+++
T Consensus         1 ~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~WKvLv~D~~t~~iis~~~~~~~Ll~~gV~lve~i~~~   80 (653)
T d1mqsa_           1 KDISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQD   80 (653)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCccccccccccccCCCcceEEEEeCCchHHHHHhCCHHHHHHCCCEEEEecCCC
Confidence            5789999999999999999999766432          355679999999999999999999999999999999999999


Q ss_pred             CCCCCCCCEEEEEccCHHHHHHHHHHhhcCCCCeEEEEcCCCCChHHHHHHHccccCCccccccceEEEEeeeeEeccCC
Q 007093           71 RKPVHDVPAVYFVQASQQNIQRIIADASASLYDSFHLNFSSSIPRALLEDLASGMLNSDSIQRISKVHDQYLDFVTLEDN  150 (618)
Q Consensus        71 r~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~y~~~~l~f~~~~~~~~le~La~~~~~~~~~~~i~~v~e~~~df~pld~~  150 (618)
                      |+|+|+++|||||+||.+||++|++||++|+|++|||+|++.+++.++++||++....++.++|.+|.|+++||+|+|+|
T Consensus        81 R~~~~~~~aIyfi~Pt~eni~~l~~d~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~~~~i~~v~e~~ldfiple~~  160 (653)
T d1mqsa_          81 RSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPE  160 (653)
T ss_dssp             CCCEEEEEEEEEECSCHHHHHHHHHHHHHTCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTT
T ss_pred             CCCCCCCCEEEEeCCCHHHHHHHHHHhCcCccCeEEEEECCCCCHHHHHHHHhhhhcccccccccEEEEEcccEEECcCC
Confidence            99999999999999999999999999999999999999999999999999998655578899999999999999999999


Q ss_pred             eEEecCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHcCCccEEEeCCCCchHHHHHHHHHHHHHHHhhcC----CC
Q 007093          151 LFSLAQKSSYVQLNDPKAGDREIEEIIERIVNGLFCVLATLGVVPIIRCPRSGPAEMVASALDQKLRDHLLSKN----NL  226 (618)
Q Consensus       151 lfsl~~~~~f~~~~~~~~~~~~~~~~l~~ia~~L~~l~~~~g~~P~Iry~~g~~a~~va~~l~~~l~~~~~~~~----~~  226 (618)
                      +|||++|++|..+|++.++++..++.+.++|++|+++|.++|.+|.|||++|+.|+++|+.|++++++.+....    ..
T Consensus       161 lFsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~a~~va~~l~~~l~e~~~~~~~~~~~~  240 (653)
T d1mqsa_         161 LFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTST  240 (653)
T ss_dssp             EEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred             EEEecCchHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEeCCCChHHHHHHHHHHHHHHHHHhhhhccccc
Confidence            99999999999999998888788899999999999999999999999999999999999999999998875321    11


Q ss_pred             CCCCCCCCCCCCCceEEEecCCCccccccccccchhhhhhhhhcccCCeEEeeCCC------------CceeEEecCCCC
Q 007093          227 FSEGGNFASSFQRPILCIFDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEK------------GGMKSFELDSAD  294 (618)
Q Consensus       227 ~~~~~~~~~~~~~~~LiIlDR~~D~iTPLl~~~TYq~Li~dl~~I~~~~v~~~~~~------------~~~~~~~L~~~D  294 (618)
                      +..    .+..++++|||+||++|++||||||||||||+||+|||++|.|+++.+.            ..++.+.|+++|
T Consensus       241 ~~~----~~~~~~~~LlIlDR~~DliTPLlhq~TYqaLi~dl~~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~l~~~D  316 (653)
T d1mqsa_         241 LQG----NDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPND  316 (653)
T ss_dssp             -----------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCCSSC
T ss_pred             ccC----CCCCCCCeEEEEecCcccccccccchhHHHHHHHHHHhcCCeEEeccccccccccccccccccceecccCcCc
Confidence            111    1245678999999999999999999999999999999999999996531            124678889999


Q ss_pred             hhHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 007093          295 PFWVANGWLEFPEVAVEIETQLNKYKKDVEEVNKRTGGNDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIA  374 (618)
Q Consensus       295 ~l~~~~R~~~i~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~v~~lp~~~~~~~~l~~H~~i~  374 (618)
                      ++|+++||+||++|++.|.+++++++++.++++++.+..+..+.+.. ...++.+|++||++||++++++++++.|++||
T Consensus       317 ~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~i~~~v~~lp~~~~~~~~l~~H~~i~  395 (653)
T d1mqsa_         317 FFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPN-SNNDTVQIQEVVKKLPELTAKKNTIDTHMNIF  395 (653)
T ss_dssp             TTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhcccc-ccccHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888776554333332221 25678899999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHhhhhcCCCChHHHHHHhc--cCCCchhHHHHHHHHHHhc-CCCChHHHHHHHHHHHhCCC
Q 007093          375 TVLLGEIKERSLDSYAKKENDMMIRGGIDRSELMGVLK--GKGSKMDKLRFAIIYLISS-ETINQSEVEAVEAALRESEV  451 (618)
Q Consensus       375 ~~i~~~~~~~~l~~~~~~Eq~i~~g~~~~~~~i~~~l~--~~~~~~d~LRLl~L~~l~~-~g~~~~~~~~l~~~l~~~g~  451 (618)
                      ++|++.+++++|.+++++||++++|.+  ...+...+.  ...++.+++||+||+++++ +|+++..++.+++.++.+|+
T Consensus       396 ~~l~~~~~~~~l~~~~~lEq~i~~~~~--~~~~l~~i~~~~~~~~~d~lRll~l~~l~~~~~~~~~~~~~~~~~l~~~~~  473 (653)
T d1mqsa_         396 AALLSQLESKSLDTFFEVEQDPGSTKT--RSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDY  473 (653)
T ss_dssp             HHHHHHHHTTTCHHHHHHTSCCSSHHH--HHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcCcc--HHHHHHHHHhcccCCHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999864  455666664  4678899999998877766 56778888888889999999


Q ss_pred             CchhHHHHHHHHHhhhhhcc--cCCCC----C----------CchhhhhHHhhcccchhhhhcccccccccccchHHHHH
Q 007093          452 DISAFQYVKKIKSLNVSLAS--ANSAS----R----------NNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALTRTV  515 (618)
Q Consensus       452 ~~~~~~~l~~l~~l~~~~~~--~~~~~----~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~p~l~rlv  515 (618)
                      +...+.++.+++.++.....  .....    .          ..........+...+.++.+++.+.++..+..++++++
T Consensus       474 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (653)
T d1mqsa_         474 DINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVV  553 (653)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHSCCCCC------------------CHHHHHTTTSSCSSSHHHHHHTCCCCCCCHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhhccccccccccccCccccccccchhhccchhhhhHhhhhhhHHHHHhhhhcCccCCCcccchhh
Confidence            88888888887766532111  11000    0          01111122223444556677777888777777889999


Q ss_pred             HHHHcCCCCC-----CCCcccccCCCCCCCCCCCCCCCCCCceEEEEEEcCccHHhhHHHHHHHHhcC-CCceEEEcccc
Q 007093          516 EALVEGRPNP-----EIDSYLMFDPRAPKSSSGSNHLKGPFKEAIVFMIGGGNYMEYGSLQELAKRQQ-PVKHVIYGTTE  589 (618)
Q Consensus       516 e~l~~~~l~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~~viVf~iGGvTy~Ei~al~~l~~~~~-~~~~iiigsT~  589 (618)
                      +.+.....+.     ....|++++|+..+.+......+.++++|||||||||||+|+++||+|+++.. ++++|+||||+
T Consensus       554 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVF~vGGvTy~Ei~~l~~l~~~~~~~~~~iiiGsT~  633 (653)
T d1mqsa_         554 DAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTA  633 (653)
T ss_dssp             HHHHCSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESS
T ss_pred             HhhhcchhhccccccccccccccCccccCCCCCCCcccCCCCEEEEEEECCcCHHHHHHHHHHHHhccCCCcEEEEeeCC
Confidence            9998765432     13678888886544222111123456789999999999999999999997642 47899999999


Q ss_pred             ccChHHHHHHHHhhcccC
Q 007093          590 ILTGDEFVEQLALLGQKM  607 (618)
Q Consensus       590 i~n~~~fl~~l~~l~~~~  607 (618)
                      |+||++||++|.+|++..
T Consensus       634 iin~~~fl~~l~~L~~~~  651 (653)
T d1mqsa_         634 ITTPAEFLNEISRLGASN  651 (653)
T ss_dssp             BCCHHHHHHHHHHHHHHT
T ss_pred             eecHHHHHHHHHHhCCCC
Confidence            999999999999999864
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure