Citrus Sinensis ID: 007166
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 615 | 2.2.26 [Sep-21-2011] | |||||||
| A7SBF0 | 660 | Integrator complex subuni | N/A | no | 0.843 | 0.786 | 0.259 | 4e-52 | |
| Q4R5Z4 | 637 | Integrator complex subuni | N/A | no | 0.853 | 0.824 | 0.259 | 4e-49 | |
| Q9NV88 | 658 | Integrator complex subuni | yes | no | 0.803 | 0.750 | 0.265 | 2e-48 | |
| Q5ZKK2 | 658 | Integrator complex subuni | yes | no | 0.705 | 0.659 | 0.264 | 4e-47 | |
| Q2KJA6 | 658 | Integrator complex subuni | yes | no | 0.707 | 0.661 | 0.267 | 5e-47 | |
| Q6DFF4 | 658 | Integrator complex subuni | N/A | no | 0.658 | 0.615 | 0.267 | 2e-46 | |
| Q8K114 | 658 | Integrator complex subuni | yes | no | 0.593 | 0.554 | 0.282 | 3e-45 | |
| Q54SH0 | 712 | Integrator complex subuni | yes | no | 0.603 | 0.521 | 0.271 | 7e-36 | |
| Q3MHC2 | 600 | Integrator complex subuni | no | no | 0.447 | 0.458 | 0.201 | 5e-08 | |
| Q9CWS4 | 600 | Integrator complex subuni | no | no | 0.447 | 0.458 | 0.201 | 5e-08 |
| >sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1 | Back alignment and function desciption |
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Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 153/590 (25%), Positives = 277/590 (46%), Gaps = 71/590 (12%)
Query: 43 MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 102
ML LPF+T GF+ KIY TE +IG+ +M EL+ + +G W
Sbjct: 111 MLALPFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNV 165
Query: 103 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG 162
+ LP+ L ++A + L VK CISK+Q + + E+ GIL + A SSG
Sbjct: 166 IRCLPAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSG 221
Query: 163 LDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ 222
+G+ NW++ I+Y+S S+ + H + + ++ SD+++ + ++
Sbjct: 222 FCLGSSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA-------- 273
Query: 223 SSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQL 282
+ N D + E C+ +++AGG+VL+P GV L
Sbjct: 274 ---------------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDL 312
Query: 283 LEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLI 341
E + +++ + L +PIY IS VA+ LAY+N EWLC+ +Q K++ +P F H +L+
Sbjct: 313 FECLYTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELL 372
Query: 342 KEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWS-GDHNSLLVLENEV 400
KE ++ VF +H+ +++ PC+VF+ H SLR G +H + W +N+++ E +
Sbjct: 373 KEARLKVFSNLHN-GFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFTEPDF 431
Query: 401 DAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW---------RTH 451
A+ P++P++MK C + LLK LQP+ ++ PE + RT
Sbjct: 432 PYLEALAPYQPLAMKTCYCPIDPRLNFAQANKLLKELQPRHLVMPESYSRPPVIHPHRTD 491
Query: 452 VSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRL 511
++ D S++ ++ + +P + ++ IA +++S + ++ + + L G L
Sbjct: 492 LTIED-PGCSLTTFNHLDVAALPISRSFEKVVIANELSSCLHPQHVR-PGVAVATLTGTL 549
Query: 512 FVNHGKHQLLP---------ENEPGGSSQTRPFLH---WGSPDPENLLAELSKMGINGSV 559
K+ L P +E G SS + L WG+ ++ + L K GI
Sbjct: 550 VTKDNKYTLQPLEFLVEPKAGSEGGDSSTNKGQLSRHLWGTVQLDDFVRSLKKRGITD-- 607
Query: 560 ERCMTDAESEDG-FTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAM 608
+ ES G T+ + + + ++ R + +I+ ++ L RI A+
Sbjct: 608 ----VNVESSGGEHTIHLPNDDAMILLDRGSTHIITHGNEELRIRIRDAL 653
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Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. Nematostella vectensis (taxid: 45351) |
| >sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 615 | ||||||
| 359495046 | 774 | PREDICTED: integrator complex subunit 9 | 0.938 | 0.745 | 0.628 | 0.0 | |
| 255558732 | 705 | conserved hypothetical protein [Ricinus | 0.936 | 0.817 | 0.596 | 0.0 | |
| 449520481 | 680 | PREDICTED: integrator complex subunit 9 | 0.933 | 0.844 | 0.575 | 0.0 | |
| 449457454 | 693 | PREDICTED: integrator complex subunit 9 | 0.933 | 0.828 | 0.575 | 0.0 | |
| 356541557 | 794 | PREDICTED: LOW QUALITY PROTEIN: integrat | 0.936 | 0.725 | 0.542 | 1e-180 | |
| 297829304 | 699 | hypothetical protein ARALYDRAFT_896920 [ | 0.938 | 0.825 | 0.513 | 1e-175 | |
| 30680341 | 699 | integrator complex subunit 9 [Arabidopsi | 0.938 | 0.825 | 0.506 | 1e-166 | |
| 147863921 | 665 | hypothetical protein VITISV_004722 [Viti | 0.830 | 0.768 | 0.524 | 1e-157 | |
| 357456769 | 536 | Integrator complex subunit [Medicago tru | 0.790 | 0.906 | 0.506 | 1e-147 | |
| 414879106 | 673 | TPA: hypothetical protein ZEAMMB73_92827 | 0.928 | 0.848 | 0.426 | 1e-132 |
| >gi|359495046|ref|XP_002265081.2| PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera] gi|296081277|emb|CBI17721.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/590 (62%), Positives = 446/590 (75%), Gaps = 13/590 (2%)
Query: 39 SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWM 98
SPMGMLGLPFL+R+ GF AKIY+TE ARIGQL+ME+L+ MN E+RQFYG EES PQWM
Sbjct: 185 SPMGMLGLPFLSRVNGFRAKIYVTEVTARIGQLLMEDLVLMNKEFRQFYGCEESGLPQWM 244
Query: 99 KWEELELLPSALRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILII 156
WE+LE LPS R+I LGEDG ELGG P + VK C+ KV TL++ +E CYNG LII
Sbjct: 245 NWEKLESLPSLFREIVLGEDGVELGGWMPLYSADDVKGCMQKVHTLKYAQEVCYNGTLII 304
Query: 157 KAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDS 216
KA SSGL+IG CNW I+G K NIA +S S F S HAM+FDY A++G+DLI+YSDLSS
Sbjct: 305 KAVSSGLEIGTCNWTINGPKRNIACLSSSIFNSSHAMNFDYHALRGNDLIIYSDLSSPVL 364
Query: 217 TEDIDQSSFS----------DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 266
+ D S +S +N+ E L + ES+EEMEKL FICSC IDSVKAG
Sbjct: 365 EDVKDNSCYSAPTSQKSSTLSADNDQEASAELLLSTSESLEEMEKLNFICSCIIDSVKAG 424
Query: 267 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQE 326
GSVLIPI R+G+ LQLLE I++ +E SSLK+PI+IISSVAEELLA+TN IPEWLCKQRQE
Sbjct: 425 GSVLIPIGRLGIILQLLELISLSLEASSLKVPIFIISSVAEELLAFTNIIPEWLCKQRQE 484
Query: 327 KLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRW 386
KLFSG+P FAH +LIKEKK+HVFPAVHSP LL WQEPCI FSPHWSLRLGP +HLLRRW
Sbjct: 485 KLFSGEPFFAHTQLIKEKKLHVFPAVHSPNLLKIWQEPCIAFSPHWSLRLGPVVHLLRRW 544
Query: 387 SGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPE 446
SGD NSLL++E VDA+LA+LPFKP++MKVLQCSFLSG KLQKVQPLLKILQPK VLFPE
Sbjct: 545 SGDENSLLIMEEGVDADLALLPFKPMAMKVLQCSFLSGIKLQKVQPLLKILQPKFVLFPE 604
Query: 447 EWRTHVSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITR 506
+ R VS+SD S + +Y ENET+ +PSLK S+ELEIAAD+ S R L + + I R
Sbjct: 605 DLRQLVSYSDTNSHAFFYYCENETLPVPSLKNSSELEIAADLVSLIHCRRLTAESIGIGR 664
Query: 507 LKGRLFVNHGKHQLLPENEPGGSSQTR-PFLHWGSPDPENLLAELSKMGINGSVERCMTD 565
LKG V HGKHQL +E SSQ+R P LHWGS D E LLA L KMGI GSVE+ +D
Sbjct: 665 LKGDFSVTHGKHQLHSGSEQADSSQSRPPLLHWGSLDLERLLAVLEKMGIRGSVEQGNSD 724
Query: 566 AESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI 615
+SE+ V V +P K++IEVR T+ISA++++L+S I +A++ IL G+
Sbjct: 725 TDSENARVVHVYEPNKALIEVRENSTIISASNESLSSLIFEAVDGILSGL 774
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558732|ref|XP_002520390.1| conserved hypothetical protein [Ricinus communis] gi|223540437|gb|EEF42006.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449520481|ref|XP_004167262.1| PREDICTED: integrator complex subunit 9 homolog, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449457454|ref|XP_004146463.1| PREDICTED: integrator complex subunit 9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356541557|ref|XP_003539241.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297829304|ref|XP_002882534.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] gi|297328374|gb|EFH58793.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30680341|ref|NP_187409.2| integrator complex subunit 9 [Arabidopsis thaliana] gi|332641036|gb|AEE74557.1| integrator complex subunit 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|147863921|emb|CAN78953.1| hypothetical protein VITISV_004722 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357456769|ref|XP_003598665.1| Integrator complex subunit [Medicago truncatula] gi|355487713|gb|AES68916.1| Integrator complex subunit [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|414879106|tpg|DAA56237.1| TPA: hypothetical protein ZEAMMB73_928273 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 615 | ||||||
| TAIR|locus:2079696 | 699 | AT3G07530 "AT3G07530" [Arabido | 0.938 | 0.825 | 0.488 | 6.7e-152 | |
| UNIPROTKB|H7BYQ6 | 552 | INTS9 "Integrator complex subu | 0.539 | 0.601 | 0.262 | 6.2e-43 | |
| UNIPROTKB|Q9NV88 | 658 | INTS9 "Integrator complex subu | 0.539 | 0.504 | 0.262 | 2.6e-42 | |
| UNIPROTKB|F1RJQ5 | 576 | INTS9 "Uncharacterized protein | 0.533 | 0.569 | 0.273 | 2.9e-42 | |
| UNIPROTKB|Q2KJA6 | 658 | INTS9 "Integrator complex subu | 0.531 | 0.496 | 0.272 | 6e-42 | |
| UNIPROTKB|F6XI08 | 658 | INTS9 "Uncharacterized protein | 0.531 | 0.496 | 0.275 | 7.8e-42 | |
| UNIPROTKB|F1MMA6 | 658 | INTS9 "Integrator complex subu | 0.531 | 0.496 | 0.272 | 1e-41 | |
| RGD|1311539 | 659 | Ints9 "integrator complex subu | 0.539 | 0.503 | 0.273 | 1.5e-41 | |
| MGI|MGI:1098533 | 658 | Ints9 "integrator complex subu | 0.536 | 0.501 | 0.269 | 1.7e-41 | |
| UNIPROTKB|Q5ZKK2 | 658 | INTS9 "Integrator complex subu | 0.539 | 0.504 | 0.270 | 5.4e-41 |
| TAIR|locus:2079696 AT3G07530 "AT3G07530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
Identities = 288/590 (48%), Positives = 394/590 (66%)
Query: 39 SPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWM 98
+PMG+LGLPFLT+ GF AKIY+TE A+IGQLMME+++ M+ E+R F+G + SS P W+
Sbjct: 110 NPMGLLGLPFLTQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEFRCFHGPDNSSFPGWI 169
Query: 99 KWEELELLPSALRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILII 156
K + E +P+ L+K+ GE G +LG + ++ C+ KVQ ++F EE CYNG LII
Sbjct: 170 KNLDSEQVPALLKKVVFGESGDDLGSWMRLYSLDDIESCMKKVQGVKFAEEVCYNGTLII 229
Query: 157 KAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGXXXXXXXXXXXXXX 216
KA SSGLDIGACNW+I+G G+++Y+S S F S HA FD+ ++
Sbjct: 230 KALSSGLDIGACNWLINGPNGSLSYVSDSIFVSHHARSFDFHGLKETDVLIYSDFSSLQS 289
Query: 217 XXXXXQSSFS-DDNNNW----EELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLI 271
S D +NN+ + +SL N ++S+EEMEKLAF+CSCA +S AGGS LI
Sbjct: 290 AEVTEDGCISPDSDNNYISTISDNKDSLLNTEDSLEEMEKLAFVCSCAAESADAGGSTLI 349
Query: 272 PINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSG 331
I R+G+ LQLLE ++ +E SSLK+PI++ISSVAEELLAYTNTIPEWLC+QRQEKL SG
Sbjct: 350 TITRIGIVLQLLELLSNSLESSSLKVPIFVISSVAEELLAYTNTIPEWLCEQRQEKLISG 409
Query: 332 DPLFAHVKLIKEKKIHVFPAVHSPKLLM----NWQEPCIVFSPHWSLRLGPTIHLLRRWS 387
+P F H+K IK KKIH+FPA+HSP L+ +WQEPCIVF+ HWSLRLGP++ LL+RW
Sbjct: 410 EPSFGHLKFIKNKKIHLFPAIHSPNLIYANRTSWQEPCIVFASHWSLRLGPSVQLLQRWR 469
Query: 388 GDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEE 447
GD SLLVLE+ + + L +LPF+PI+MK+LQCSFLSG +LQK+ L+ +LQPK+ L P+
Sbjct: 470 GDPKSLLVLEDGISSGLGLLPFRPIAMKILQCSFLSGIRLQKLPTLVSVLQPKIFLVPDA 529
Query: 448 WRXXXXXXXXXXXXXXXYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKK-LNITR 506
Y EN+T+H+P + ++ +EI D+ASK WR L+Q++ I R
Sbjct: 530 VNQRISLAAIKTISILNYFENKTLHVPRIVDNPSVEITTDLASKLSWRKLRQRESFGIAR 589
Query: 507 LKGRLFVNHGKHQLLPENEPGGSS-QTRPFLHWGSPDPENLLAELSKMGINGSVERCMTD 565
LKG L + GKH+L+ E SS + RP HWGS PE LL L KMGI GS+E+ D
Sbjct: 590 LKGGLLMEDGKHRLVSGLEQEESSGKARPLRHWGSVAPELLLDALLKMGIKGSIEQSTGD 649
Query: 566 AESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAMENILEGI 615
SED + +++P +IE T I D+N+ S++ +A++ +L+GI
Sbjct: 650 NGSEDKSIIHIENPNSGLIEFSEMGTAIITGDENVVSQVFQAIDGVLDGI 699
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| UNIPROTKB|H7BYQ6 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9NV88 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RJQ5 INTS9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2KJA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6XI08 INTS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MMA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| RGD|1311539 Ints9 "integrator complex subunit 9" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1098533 Ints9 "integrator complex subunit 9" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZKK2 INTS9 "Integrator complex subunit 9" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 615 | |||
| smart01027 | 126 | smart01027, Beta-Casp, Beta-Casp domain | 2e-15 | |
| pfam10996 | 124 | pfam10996, Beta-Casp, Beta-Casp domain | 3e-13 | |
| COG1782 | 637 | COG1782, COG1782, Predicted metal-dependent RNase, | 1e-05 | |
| COG1236 | 427 | COG1236, YSH1, Predicted exonuclease of the beta-l | 1e-05 | |
| TIGR03675 | 630 | TIGR03675, arCOG00543, arCOG00543 universal archae | 0.001 |
| >gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-15
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 279 FLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD--PLF 335
+LL + L +PIY+ S +A + PEW+ + +++ G F
Sbjct: 1 TQELLLILEELWREGELPNVPIYLDSPMAARATEIYKSYPEWMSDEIRKRFEQGRNPFDF 60
Query: 336 AHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLV 395
++K +K + K L +++ P ++ + L G + H L+R + D + ++
Sbjct: 61 KNLKFVKSLEES--------KRLNDYKGPKVIIASSGMLTGGRSRHYLKRLAPDPRNTVI 112
Query: 396 L 396
L
Sbjct: 113 L 113
|
The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains. Length = 126 |
| >gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain | Back alignment and domain information |
|---|
| >gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 615 | |||
| KOG1138 | 653 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| KOG1136 | 501 | consensus Predicted cleavage and polyadenylation s | 100.0 | |
| KOG1135 | 764 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| COG1782 | 637 | Predicted metal-dependent RNase, consists of a met | 100.0 | |
| KOG1137 | 668 | consensus mRNA cleavage and polyadenylation factor | 100.0 | |
| TIGR03675 | 630 | arCOG00543 arCOG00543 universal archaeal KH-domain | 100.0 | |
| COG1236 | 427 | YSH1 Predicted exonuclease of the beta-lactamase f | 100.0 | |
| TIGR00649 | 422 | MG423 conserved hypothetical protein. Contains an | 100.0 | |
| PF10996 | 126 | Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T | 99.87 | |
| COG0595 | 555 | mRNA degradation ribonucleases J1/J2 (metallo-beta | 99.83 | |
| PF13299 | 161 | CPSF100_C: Cleavage and polyadenylation factor 2 C | 99.48 | |
| TIGR03307 | 238 | PhnP phosphonate metabolism protein PhnP. This fam | 99.33 | |
| PF12706 | 194 | Lactamase_B_2: Beta-lactamase superfamily domain; | 99.24 | |
| PRK11244 | 250 | phnP carbon-phosphorus lyase complex accessory pro | 99.24 | |
| PF07521 | 43 | RMMBL: RNA-metabolising metallo-beta-lactamase; In | 99.06 | |
| TIGR02649 | 303 | true_RNase_BN ribonuclease BN. Members of this pro | 99.05 | |
| TIGR02651 | 299 | RNase_Z ribonuclease Z. Processing of the 3-prime | 99.0 | |
| TIGR02108 | 302 | PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. | 98.99 | |
| PRK05184 | 302 | pyrroloquinoline quinone biosynthesis protein PqqB | 98.96 | |
| PRK02113 | 252 | putative hydrolase; Provisional | 98.93 | |
| KOG1361 | 481 | consensus Predicted hydrolase involved in interstr | 98.92 | |
| smart00849 | 183 | Lactamase_B Metallo-beta-lactamase superfamily. Ap | 98.9 | |
| TIGR02650 | 277 | RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me | 98.8 | |
| PRK00055 | 270 | ribonuclease Z; Reviewed | 98.7 | |
| PRK11921 | 394 | metallo-beta-lactamase/flavodoxin domain-containin | 98.69 | |
| PRK02126 | 334 | ribonuclease Z; Provisional | 98.64 | |
| PRK00685 | 228 | metal-dependent hydrolase; Provisional | 98.62 | |
| PF00753 | 194 | Lactamase_B: Metallo-beta-lactamase superfamily; I | 98.56 | |
| PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; | 98.5 | |
| PRK04286 | 298 | hypothetical protein; Provisional | 98.45 | |
| TIGR03413 | 248 | GSH_gloB hydroxyacylglutathione hydrolase. Members | 98.42 | |
| COG1234 | 292 | ElaC Metal-dependent hydrolases of the beta-lactam | 98.33 | |
| COG0491 | 252 | GloB Zn-dependent hydrolases, including glyoxylase | 98.02 | |
| PLN02469 | 258 | hydroxyacylglutathione hydrolase | 98.0 | |
| PLN02398 | 329 | hydroxyacylglutathione hydrolase | 97.98 | |
| PRK11709 | 355 | putative L-ascorbate 6-phosphate lactonase; Provis | 97.97 | |
| PLN02962 | 251 | hydroxyacylglutathione hydrolase | 97.86 | |
| COG1237 | 259 | Metal-dependent hydrolases of the beta-lactamase s | 97.85 | |
| PRK10241 | 251 | hydroxyacylglutathione hydrolase; Provisional | 97.76 | |
| COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy product | 97.47 | |
| PF02112 | 335 | PDEase_II: cAMP phosphodiesterases class-II; Inter | 97.43 | |
| TIGR00361 | 662 | ComEC_Rec2 DNA internalization-related competence | 97.37 | |
| KOG2121 | 746 | consensus Predicted metal-dependent hydrolase (bet | 97.34 | |
| PF13483 | 163 | Lactamase_B_3: Beta-lactamase superfamily domain; | 97.31 | |
| COG1235 | 269 | PhnP Metal-dependent hydrolases of the beta-lactam | 97.21 | |
| PRK11539 | 755 | ComEC family competence protein; Provisional | 97.18 | |
| COG2333 | 293 | ComEC Predicted hydrolase (metallo-beta-lactamase | 96.67 | |
| KOG0813 | 265 | consensus Glyoxylase [General function prediction | 96.37 | |
| PF07522 | 110 | DRMBL: DNA repair metallo-beta-lactamase; InterPro | 95.35 | |
| COG2248 | 304 | Predicted hydrolase (metallo-beta-lactamase superf | 93.73 | |
| COG2220 | 258 | Predicted Zn-dependent hydrolases of the beta-lact | 92.25 | |
| COG5212 | 356 | PDE1 Low-affinity cAMP phosphodiesterase [Signal t | 87.19 |
| >KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-96 Score=760.84 Aligned_cols=559 Identities=31% Similarity=0.532 Sum_probs=505.4
Q ss_pred ccccc-cCCcccccc------ccchhhhcc------------cCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHH
Q 007166 5 IAHWT-FRHSQSFLH------CQMIFIKLY------------ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEA 64 (615)
Q Consensus 5 ~~~~~-~~~~~~lld------cg~~f~~~~------------~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~p 64 (615)
.|+|. .++.+-..| ||..|.++. .++| +|||| ++..+.||||+++++||.|+||||+|
T Consensus 52 ~p~~~~~~d~~kfq~~elke~~~rvfvesppe~~l~~t~lld~stiDvILIS--Ny~~mlgLPfiTentGF~gkiY~TE~ 129 (653)
T KOG1138|consen 52 LPSLDAQNDIQKFQDLELKECCGRVFVESPPEFTLPATHLLDASTIDVILIS--NYMGMLGLPFITENTGFFGKIYATEP 129 (653)
T ss_pred CccccccCccchhhhHHHHHhCCceEEcCCchhccchhhhhcccceeEEEEc--chhhhcccceeecCCCceeEEEEech
Confidence 57888 556666666 888898875 6899 99997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceee
Q 007166 65 AARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTL 142 (615)
Q Consensus 65 T~~l~~lll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v 142 (615)
|+++|++||+|++.++++ -+++++.+.||+..+.+.+|+++++. .+...|+++| +||+.|++|++.+
T Consensus 130 t~qiGrllMEelv~fier-----~p~~~S~~~Wk~k~~~~~lpsplk~~------~~~~~Wr~~ysl~Dv~sclsKVq~v 198 (653)
T KOG1138|consen 130 TAQIGRLLMEELVSFIER-----FPKASSAPLWKKKLDSELLPSPLKKA------VFLGSWRRLYSLDDVESCLSKVQGV 198 (653)
T ss_pred HHHHHHHHHHHHHHHHHh-----ccccccchhhhhhhhhhhcCCCchhh------ccccceeeeeehhHHHHHHHhheec
Confidence 999999999999999986 36888899999998889999988774 4678999999 9999999999999
Q ss_pred cCCcEEEeCCcEEEEEeccccccceEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccC
Q 007166 143 RFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ 222 (615)
Q Consensus 143 ~Y~q~~~l~g~l~it~~~AGHiLGsa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~ 222 (615)
+|+|++++.|.+.+||.+|||.+|||+|.|...++++-|++|++..++|+.++|++.|+.+|+||+++++..+
T Consensus 199 ~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~------- 271 (653)
T KOG1138|consen 199 GFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLP------- 271 (653)
T ss_pred ccceeeeccceEEEEeccccccccccceEEecCCcceEEEecCcccccCCccccccccccccEEEEecccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999977665
Q ss_pred CcccCCCCchhhhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCCCc-ccEEE
Q 007166 223 SSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYI 301 (615)
Q Consensus 223 ~~~~~~~~~~e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~l~-vpIy~ 301 (615)
+.+++ ++..+||..|..|++++|+||+||+|+|.+.||+++|.+..++.++. +||||
T Consensus 272 ----tanpd------------------~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yf 329 (653)
T KOG1138|consen 272 ----TANPD------------------EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYF 329 (653)
T ss_pred ----cCCcc------------------chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceE
Confidence 23333 16678999999999999999999999999999999999999999986 99999
Q ss_pred ECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCCCCcchHHH
Q 007166 302 ISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIH 381 (615)
Q Consensus 302 ~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gmL~~G~s~~ 381 (615)
+||+|++.+++.++.+|||+.++|+++|.++.||+|..++++++++++.++++. ++++++.|||||++|++|++|++.|
T Consensus 330 ISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~-fSndfrqpcvvf~~H~SlRfgdv~h 408 (653)
T KOG1138|consen 330 ISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGL-FSNDFRQPCVVFMGHPSLRFGDVVH 408 (653)
T ss_pred ecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHH-HhhhcccceeEecCCcchhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999874 8999999999999999999999999
Q ss_pred HHHHHcCCCCCcEEec-CCcchhcccCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCcccccccc----
Q 007166 382 LLRRWSGDHNSLLVLE-NEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD---- 456 (615)
Q Consensus 382 ll~~~~~d~~N~IIl~-g~~~~~~~l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l~---- 456 (615)
+++-|+.+|+|+||+| |++++++.+.||+|+.|++.+|||+.+.|++++.++++.+||+.|+++..+.+++....
T Consensus 409 ~~e~~g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpeaytqp~~~ap~~~i 488 (653)
T KOG1138|consen 409 FLECWGLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPEAYTQPIPLAPIKTI 488 (653)
T ss_pred HHHHhcCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEEChhhhcCCCCccchhee
Confidence 9999999999999975 56999999999999999999999999999999999999999999999999998876664
Q ss_pred --cCCceeeecCCCcEEEeCCCCeeEEEEEcHHHHhhhhhhhhhccC-CcceEEEEEEEeeCCeeeeecCCCCCCC----
Q 007166 457 --VTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKK-LNITRLKGRLFVNHGKHQLLPENEPGGS---- 529 (615)
Q Consensus 457 --~~~~~v~~p~~ge~i~l~~~~~~~~v~l~~~l~~~l~~~~~~~~~-~~~a~v~g~l~~~~~~~~l~~~~~~~~~---- 529 (615)
..-+++.+...+|.+++|.+++.++|.++++||++|.|++++ ++ +.+|+++|+|.++|++|.|+|...+...
T Consensus 489 ~~~d~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~-~~~~~iAtl~~~L~~~d~kh~Lvp~~~~~k~ek~s 567 (653)
T KOG1138|consen 489 SILDYFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELR-QGEFGIATLKGVLLMKDGKHRLVPAKVSLKQEKSS 567 (653)
T ss_pred hhccccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhcc-CceeEEEEEEEEEEEecCceeeeecccchhhhhcc
Confidence 234567888899999999999999999999999999999997 55 8999999999999999999996554321
Q ss_pred CCCC------CceEecCCChHHHHHHHHHCCCceEEeeccccCCCCCceEEEEeCCCCcEEEEecceeEEEcC-CHHHHH
Q 007166 530 SQTR------PFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-DKNLAS 602 (615)
Q Consensus 530 ~~~~------~~~~~g~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~-~~~~r~ 602 (615)
+... +....|++.++++++.|.+.||....... +..+.+|...+ ++++|+++++.|||+|+ +..+|.
T Consensus 568 ~~~~p~lk~lk~~~a~ei~vda~~k~~ik~~~s~itvdn-----~g~g~~i~~~e-~enlikf~Em~t~Ii~~dd~~v~~ 641 (653)
T KOG1138|consen 568 SKARPVLKVLKNSVAGEILVDALLKMLIKGGFSQITVDN-----TGEGKSIILIE-NENLIKFEEMGTHIICGDDNVVRQ 641 (653)
T ss_pred cccchHHhhhhhccCcccchHHHHHHHhhcchhheeeec-----CCCceEEEecc-CchhhhhhhccceEEECCCchhhh
Confidence 1111 34778999999999999999999886542 33567777766 67799999999999999 999999
Q ss_pred HHHHHHHHhhc
Q 007166 603 RIVKAMENILE 613 (615)
Q Consensus 603 ~l~~~~~~~l~ 613 (615)
.++|+...++.
T Consensus 642 ~~~di~~~llq 652 (653)
T KOG1138|consen 642 VLRDIDGKLLQ 652 (653)
T ss_pred hhHhhhhhhcc
Confidence 99999988763
|
|
| >KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
|---|
| >COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00649 MG423 conserved hypothetical protein | Back alignment and domain information |
|---|
| >PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease | Back alignment and domain information |
|---|
| >COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal | Back alignment and domain information |
|---|
| >TIGR03307 PhnP phosphonate metabolism protein PhnP | Back alignment and domain information |
|---|
| >PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A | Back alignment and domain information |
|---|
| >PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
|---|
| >PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
| >TIGR02649 true_RNase_BN ribonuclease BN | Back alignment and domain information |
|---|
| >TIGR02651 RNase_Z ribonuclease Z | Back alignment and domain information |
|---|
| >TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B | Back alignment and domain information |
|---|
| >PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional | Back alignment and domain information |
|---|
| >PRK02113 putative hydrolase; Provisional | Back alignment and domain information |
|---|
| >KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >smart00849 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
|---|
| >TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type | Back alignment and domain information |
|---|
| >PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
|---|
| >PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK02126 ribonuclease Z; Provisional | Back alignment and domain information |
|---|
| >PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
| >PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] | Back alignment and domain information |
|---|
| >PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
|---|
| >PRK04286 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
|---|
| >COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02469 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PLN02398 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional | Back alignment and domain information |
|---|
| >PLN02962 hydroxyacylglutathione hydrolase | Back alignment and domain information |
|---|
| >COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10241 hydroxyacylglutathione hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 | Back alignment and domain information |
|---|
| >TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 | Back alignment and domain information |
|---|
| >KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A | Back alignment and domain information |
|---|
| >COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11539 ComEC family competence protein; Provisional | Back alignment and domain information |
|---|
| >COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0813 consensus Glyoxylase [General function prediction only] | Back alignment and domain information |
|---|
| >PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs | Back alignment and domain information |
|---|
| >COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
| >COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
|---|
| >COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 615 | ||||
| 3af5_A | 651 | The Crystal Structure Of An Archaeal Cpsf Subunit, | 1e-04 |
| >pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 | Back alignment and structure |
|---|
Score = 106 bits (264), Expect = 5e-24
Identities = 46/368 (12%), Positives = 102/368 (27%), Gaps = 86/368 (23%)
Query: 45 GLPFLTRME----GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 100
L ++Y T +G++ + S+G
Sbjct: 69 AHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSY-------------ASAGVIGPYD 115
Query: 101 EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIK 157
+ ++ + L++ + L +
Sbjct: 116 TNKL-----------------------DLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLL 152
Query: 158 AFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDST 217
A+++G+ G W IS + Y N + + ++ D+T
Sbjct: 153 AYNAGVCPGGSIWCISTYSEKLVYAKRWNHT-------RDNILNAASIL--------DAT 197
Query: 218 EDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVG 277
+ ++ +L + S ++ + + GSV+IP++ G
Sbjct: 198 GKPLSTLMRPSA-----IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSG 252
Query: 278 VFLQLLEQIAIFMECSS-----LKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 332
FL L Q+ + S+ ++P+ I+S L Y ++ EWL + + +
Sbjct: 253 KFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRN 312
Query: 333 ----PLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 388
I +P L + I F ++ +
Sbjct: 313 NTSPFEIGSRIKI-----------IAPNELSKYPGSKICFVSEVG---ALINEVIIKVGN 358
Query: 389 DHNSLLVL 396
+ L+L
Sbjct: 359 SEKTTLIL 366
|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 | Back alignment and structure |
|---|
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 615 | |||
| 3iek_A | 431 | Ribonuclease TTHA0252; metallo beta lactamase fold | 100.0 | |
| 2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 | 100.0 | |
| 3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal | 100.0 | |
| 2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 | 100.0 | |
| 2ycb_A | 636 | Beta-CAsp RNAse, cleavage and polyadenylation spec | 100.0 | |
| 2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase | 100.0 | |
| 3zq4_A | 555 | Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat | 100.0 | |
| 3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclea | 100.0 | |
| 2az4_A | 429 | Hypothetical protein EF2904; structural genomics, | 99.96 | |
| 4b87_A | 367 | DNA cross-LINK repair 1A protein; dclre1A, DCLRE, | 99.94 | |
| 3zdk_A | 336 | 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A | 99.93 | |
| 2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, | 99.37 | |
| 1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase, hy | 99.26 | |
| 3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosph | 99.23 | |
| 2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase t | 99.22 | |
| 1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, | 99.2 | |
| 3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural | 99.17 | |
| 2r2d_A | 276 | AGR_PTI_140P, Zn-dependent hydrolases; lactonase, | 99.09 | |
| 3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta prote | 99.07 | |
| 3esh_A | 280 | Protein similar to metal-dependent hydrolase; stru | 99.0 | |
| 3zwf_A | 368 | Zinc phosphodiesterase ELAC protein 1; beta-lactam | 99.0 | |
| 3adr_A | 261 | Putative uncharacterized protein ST1585; quorum se | 98.93 | |
| 3kl7_A | 235 | Putative metal-dependent hydrolase; structural gen | 98.87 | |
| 3m8t_A | 294 | 'BLR6230 protein; subclass B3 beta-lactamase, zinc | 98.86 | |
| 1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA | 98.85 | |
| 2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A | 98.85 | |
| 3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotic | 98.84 | |
| 1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, | 98.82 | |
| 3dha_A | 254 | N-acyl homoserine lactone hydrolase; zinc bimetall | 98.76 | |
| 2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, ant | 98.75 | |
| 1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase | 98.75 | |
| 2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, s | 98.71 | |
| 2zwr_A | 207 | Metallo-beta-lactamase superfamily protein; hydrol | 98.7 | |
| 4efz_A | 298 | Metallo-beta-lactamase family protein; structural | 98.7 | |
| 1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A { | 98.7 | |
| 3aj3_A | 274 | MLR6805 protein, 4-pyridoxolactonase; Zn-protein, | 98.7 | |
| 4ax1_B | 303 | Metallo-beta-lactamase AIM-1; hydrolase, antibioti | 98.68 | |
| 1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alph | 98.65 | |
| 4hl2_A | 243 | Beta-lactamase NDM-1; structural genomics, PSI-bio | 98.64 | |
| 3q6v_A | 233 | Beta-lactamase; metalloenzyme, alpha-beta, hydrola | 98.62 | |
| 2zo4_A | 317 | Metallo-beta-lactamase family protein; hydrolase; | 98.62 | |
| 2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like doma | 98.6 | |
| 3hnn_A | 262 | Putative diflavin flavoprotein A 5; PSI-2, protein | 98.6 | |
| 1a7t_A | 232 | Metallo-beta-lactamase; hydrolase (beta-lactamase) | 98.59 | |
| 3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, | 98.59 | |
| 2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; | 98.58 | |
| 1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductas | 98.57 | |
| 1mqo_A | 227 | Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd | 98.57 | |
| 2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactama | 98.56 | |
| 1sml_A | 269 | Protein (penicillinase); metallo-beta-lactamase, a | 98.55 | |
| 2gcu_A | 245 | Putative hydroxyacylglutathione hydrolase 3; ethyl | 98.5 | |
| 3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-l | 98.5 | |
| 2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alph | 98.5 | |
| 4dik_A | 410 | Flavoprotein; TM0755, electron transport, DI-iron | 98.48 | |
| 2qed_A | 258 | Hydroxyacylglutathione hydrolase; metallo-B- super | 98.47 | |
| 4ad9_A | 289 | Lactb2, beta-lactamase-like protein 2; hydrolase, | 98.47 | |
| 1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hyd | 98.42 | |
| 1xm8_A | 254 | Glyoxalase II; structural genomics, protein struct | 98.42 | |
| 3tp9_A | 474 | Beta-lactamase and rhodanese domain protein; struc | 98.42 | |
| 3rpc_A | 264 | Possible metal-dependent hydrolase; structural gen | 98.41 | |
| 3r2u_A | 466 | Metallo-beta-lactamase family protein; structural | 98.3 | |
| 2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ ch | 98.3 | |
| 1vjn_A | 220 | Zn-dependent hydrolase of metallo-beta-lactamase s | 98.27 | |
| 2y8b_A | 265 | Metallo-B-lactamase; hydrolase, cephalosporins, an | 98.27 | |
| 1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactama | 98.21 | |
| 2p97_A | 201 | Hypothetical protein; putative metal-dependent hyd | 97.93 | |
| 4eyb_A | 270 | Beta-lactamase NDM-1; metallo beta lactamase, anti | 97.84 | |
| 2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 | 97.53 | |
| 2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase s | 97.33 | |
| 3h3e_A | 267 | Uncharacterized protein TM1679; structural genomic | 96.33 | |
| 2yhe_A | 668 | SEC-alkyl sulfatase; hydrolase, inversion, metallo | 94.32 |
| >3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-68 Score=581.88 Aligned_cols=377 Identities=19% Similarity=0.200 Sum_probs=317.7
Q ss_pred CCccccccccchhhhc-----------ccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHH
Q 007166 11 RHSQSFLHCQMIFIKL-----------YARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELIC 78 (615)
Q Consensus 11 ~~~~~lldcg~~f~~~-----------~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~ 78 (615)
.+..+|+|||. +.+. .+.+| +|||||+|.||+|+||+|.+. ||+++||||++|+++++.++.|+.+
T Consensus 22 ~~~~iLID~G~-~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~~-~~~~~Iy~t~~t~~l~~~~l~d~~~ 99 (431)
T 3iek_A 22 GGRRVLLDCGM-FQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFRE-GYRGPVYATRATVLLMEIVLEDALK 99 (431)
T ss_dssp TTEEEEECCCC-CCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHHT-TCCSCEEECHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCC-CcchhhccchhhcCCCcccCCEEEECCCChHHhccHHHHHHc-CCCCeEEEcHHHHHHHHHHHHHHHh
Confidence 46789999997 3221 25789 999999999999999999984 8999999999999999999999875
Q ss_pred HHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEeCCcEEE
Q 007166 79 MNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILII 156 (615)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l~g~l~i 156 (615)
+++ .++| +|++.++.+++.++|++++++ +++++
T Consensus 100 ~~~--------------------------------------------~~~y~~~~~~~~~~~~~~l~~~~~~~l-~g~~v 134 (431)
T 3iek_A 100 VMD--------------------------------------------EPFFGPEDVEEALGHLRPLEYGEWLRL-GALSL 134 (431)
T ss_dssp HCS--------------------------------------------SCSSCHHHHHHHHHTEEECCTTCCEEE-TTEEE
T ss_pred hcc--------------------------------------------cCCCCHHHHHHHHhccEEcCCCCeEEe-CCEEE
Confidence 431 1566 899999999999999999999 67999
Q ss_pred EEeccccccceEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccCCcccCCCCchhhhh
Q 007166 157 KAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELM 236 (615)
Q Consensus 157 t~~~AGHiLGsa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~~~~~~~~~~~e~~~ 236 (615)
+++++||++||++|.|+.++++|+||||+...... ...++..+.++|+||+|| ||+. + .++.
T Consensus 135 ~~~~agH~~Gs~~~~i~~~~~~ilfsGD~~~~~~~-~l~~~~~~~~~D~LI~Es--Ty~~---~-------~h~~----- 196 (431)
T 3iek_A 135 AFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKD-VLPDPSLPPLADLVLAEG--TYGD---R-------PHRP----- 196 (431)
T ss_dssp EEEECCSSTTCEEEEEEETTEEEEECCCCCCTTSS-SSCCCCBCCCCSEEEEEC--TTTT---C-------CCCC-----
T ss_pred EEEeCCCCcCceEEEEEECCEEEEEeCCCCCCCCc-ccCCccccCCccEEEEEc--ccCC---c-------CCCC-----
Confidence 99999999999999999999999999998754321 111334467899999999 8861 0 1211
Q ss_pred hccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHHHHHH
Q 007166 237 NSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNT 315 (615)
Q Consensus 237 ~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~~~~~ 315 (615)
+. ++.++|++.|.+++++||+||||+|++||+|||+++|+++|++ ++ +|||++||||.+++++|+.
T Consensus 197 ---------~~--~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~ 263 (431)
T 3iek_A 197 ---------YR--ETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPR 263 (431)
T ss_dssp ---------HH--HHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGG
T ss_pred ---------hH--HHHHHHHHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHH
Confidence 12 2345688999999999999999999999999999999999988 65 9999999999999999999
Q ss_pred hHHhhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCcEE
Q 007166 316 IPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLV 395 (615)
Q Consensus 316 ~~ewl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~~d~~N~II 395 (615)
+.|||++++++.+..+++||.+..+ +.+++......++..++||||||+||||++|+++++|++|++||+|+||
T Consensus 264 ~~~~~~~~~~~~~~~~~~pf~~~~~------~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii 337 (431)
T 3iek_A 264 LVRYFSEEVQAHFLQGKNPFRPAGL------EVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALV 337 (431)
T ss_dssp GGGGSCHHHHHHHHTTSCTTCCTTE------EECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEE
T ss_pred hHHHHHHHHHHHHhcCCCCCCCCCe------EEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEE
Confidence 9999999999988888889866443 3333332222345679999999999999999999999999999999999
Q ss_pred ecCCcchhcc-------------cCCCceeeeEEEEe-ecccCCCHhhHHHHHHhcCCCEEEEeccCcccccccc----c
Q 007166 396 LENEVDAELA-------------VLPFKPISMKVLQC-SFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----V 457 (615)
Q Consensus 396 l~g~~~~~~~-------------l~~~~~v~~~v~~~-~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l~----~ 457 (615)
||||+.++.. .+...+|+|+|.++ +||||||+++|++|++.++ +|+|||||+++++.|+ +
T Consensus 338 ~~gyq~~gt~g~~l~~~~~~v~~~g~~~~v~a~v~~~~~~saHad~~~l~~~~~~~~--~v~lvHge~~~~~~l~~~l~~ 415 (431)
T 3iek_A 338 FVGYQPQGGLGAEIIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEP--RVVLVHGEEEKLLALGKLLAL 415 (431)
T ss_dssp ECSCCCTTSHHHHHHTCCSEEEETTEEEECCSEEEECGGGCSSCCHHHHHHHHTTCS--EEEEESSCHHHHHHHHHHHHH
T ss_pred EECCCCCCChHHHhhcCCcEEEECCEEEEEEEEEEEECCccccCCHHHHHHHHHhCC--eEEEECCCHHHHHHHHHHHHH
Confidence 9999887531 23457899999999 6999999999999999874 8999999999999997 3
Q ss_pred CCceeeecCCCcEEEe
Q 007166 458 TSFSVSHYSENETIHI 473 (615)
Q Consensus 458 ~~~~v~~p~~ge~i~l 473 (615)
.+.++++|.+||++++
T Consensus 416 ~~~~~~~p~~~~~~~~ 431 (431)
T 3iek_A 416 RGQEVSLARFGEGVPV 431 (431)
T ss_dssp TTCEEEECCTTCCEEC
T ss_pred hCCcEEECCCCCEEeC
Confidence 4559999999999875
|
| >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A | Back alignment and structure |
|---|
| >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* | Back alignment and structure |
|---|
| >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
| >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* | Back alignment and structure |
|---|
| >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 | Back alignment and structure |
|---|
| >4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} | Back alignment and structure |
|---|
| >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
|---|
| >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* | Back alignment and structure |
|---|
| >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A | Back alignment and structure |
|---|
| >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 | Back alignment and structure |
|---|
| >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
|---|
| >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* | Back alignment and structure |
|---|
| >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A | Back alignment and structure |
|---|
| >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
| >3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
| >3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A | Back alignment and structure |
|---|
| >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A | Back alignment and structure |
|---|
| >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} | Back alignment and structure |
|---|
| >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 | Back alignment and structure |
|---|
| >1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 | Back alignment and structure |
|---|
| >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A | Back alignment and structure |
|---|
| >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
|---|
| >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* | Back alignment and structure |
|---|
| >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A | Back alignment and structure |
|---|
| >4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 | Back alignment and structure |
|---|
| >3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A | Back alignment and structure |
|---|
| >4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B | Back alignment and structure |
|---|
| >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 | Back alignment and structure |
|---|
| >4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A | Back alignment and structure |
|---|
| >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
|---|
| >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* | Back alignment and structure |
|---|
| >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A | Back alignment and structure |
|---|
| >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
|---|
| >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
|---|
| >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... | Back alignment and structure |
|---|
| >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
|---|
| >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A | Back alignment and structure |
|---|
| >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} | Back alignment and structure |
|---|
| >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* | Back alignment and structure |
|---|
| >4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* | Back alignment and structure |
|---|
| >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 | Back alignment and structure |
|---|
| >4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* | Back alignment and structure |
|---|
| >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A | Back alignment and structure |
|---|
| >3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} | Back alignment and structure |
|---|
| >3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* | Back alignment and structure |
|---|
| >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 | Back alignment and structure |
|---|
| >2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A | Back alignment and structure |
|---|
| >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A | Back alignment and structure |
|---|
| >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 | Back alignment and structure |
|---|
| >4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A | Back alignment and structure |
|---|
| >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* | Back alignment and structure |
|---|
| >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
| >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} | Back alignment and structure |
|---|
| >2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 615 | ||||
| d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two | 3e-21 | |
| d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation | 3e-04 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.9 bits (235), Expect = 3e-21
Identities = 41/364 (11%), Positives = 100/364 (27%), Gaps = 78/364 (21%)
Query: 45 GLPFLTRME----GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKW 100
L ++Y T +G++ + + +
Sbjct: 69 AHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLD-------- 120
Query: 101 EELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIK 157
+ ++ + L++ + L +
Sbjct: 121 ----------------------------LEDIEISFDHIVPLKYSQLVDLRSRYDGLTLL 152
Query: 158 AFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDST 217
A+++G+ G W IS + Y + + + ++ +
Sbjct: 153 AYNAGVCPGGSIWCISTYSEKLVY-------AKRWNHTRDNILNAASILDATGKPLSTLM 205
Query: 218 EDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVG 277
++ +L + S ++ + + GSV+IP++ G
Sbjct: 206 RPSA-------------IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSG 252
Query: 278 VFLQLLEQIAIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD 332
FL L Q+ + S+ ++P+ I+S L Y ++ EWL + + +
Sbjct: 253 KFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRN 312
Query: 333 PLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNS 392
+I + +P L + I F ++ + +
Sbjct: 313 NTSPF-------EIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKT 362
Query: 393 LLVL 396
L+L
Sbjct: 363 TLIL 366
|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 615 | |||
| d2i7xa1 | 514 | Cleavage factor two protein 2, CFT2 {Baker's yeast | 100.0 | |
| d2dkfa1 | 431 | Putative RNA-degradation protein TTHA0252 {Thermus | 100.0 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 100.0 | |
| d2az4a1 | 183 | Hypothetical protein EF2904 {Enterococcus faecalis | 99.67 | |
| d1zkpa1 | 244 | Hypothetical protein BA1088 (BAS1016) {Bacillus an | 99.1 | |
| d2e7ya1 | 280 | Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax | 98.94 | |
| d1p9ea_ | 294 | Methyl parathion hydrolase {Pseudomonas sp. WBC-3 | 98.91 | |
| d1k07a_ | 262 | Zn metallo-beta-lactamase {Fluoribacter gormanii, | 98.81 | |
| d2cbna1 | 305 | Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: | 98.78 | |
| d2q0ia1 | 298 | Quinolone signal response protein PqsE {Pseudomona | 98.73 | |
| d1y44a1 | 307 | Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId | 98.64 | |
| d2aioa1 | 266 | Zn metallo-beta-lactamase {Xanthomonas maltophilia | 98.51 | |
| d1x8ha_ | 228 | Zn metallo-beta-lactamase {Aeromonas hydrophila, C | 98.45 | |
| d2gmna1 | 264 | Zn metallo-beta-lactamase {Bradyrhizobium japonicu | 98.43 | |
| d1ycga2 | 249 | Nitric oxide reductase N-terminal domain {Moorella | 98.39 | |
| d1ztca1 | 207 | Hypothetical protein TM0894 {Thermotoga maritima [ | 98.38 | |
| d1e5da2 | 249 | Rubredoxin oxygen:oxidoreductase (ROO), N-terminal | 98.17 | |
| d1ko3a_ | 230 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 98.0 | |
| d1wraa1 | 305 | Teichoic acid phosphorylcholine esterase Pce (LytD | 98.0 | |
| d1xtoa_ | 304 | Coenzyme PQQ synthesis protein B, PqqB {Pseudomona | 97.87 | |
| d1mqoa_ | 221 | Zn metallo-beta-lactamase {Bacillus cereus [TaxId: | 97.83 | |
| d1m2xa_ | 219 | Zn metallo-beta-lactamase {Chryseobacterium mening | 97.7 | |
| d1vmea2 | 250 | ROO-like flavoprotein TM0755, N-terminal domain {T | 97.68 | |
| d2qeda1 | 251 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 97.68 | |
| d1xm8a_ | 254 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 97.58 | |
| d1jjta_ | 220 | Zn metallo-beta-lactamase {Pseudomonas aeruginosa, | 97.57 | |
| d1znba_ | 230 | Zn metallo-beta-lactamase {Bacteroides fragilis [T | 97.53 | |
| d1qh5a_ | 260 | Glyoxalase II (hydroxyacylglutathione hydrolase) { | 97.53 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 96.68 | |
| d1vjna_ | 209 | Hypothetical protein TM0207 {Thermotoga maritima [ | 96.17 | |
| d2p97a1 | 200 | Hypothetical protein Ava3068 {Anabaena variabilis | 93.49 |
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.3e-68 Score=589.16 Aligned_cols=387 Identities=13% Similarity=0.154 Sum_probs=313.0
Q ss_pred cCCccccccccch-----------hhhcccCcE-EEEEecCCccccchHHHhhcc----cCCCceEEeeHHHHHHHHHHH
Q 007166 10 FRHSQSFLHCQMI-----------FIKLYARKI-LILKTGRSPMGMLGLPFLTRM----EGFSAKIYITEAAARIGQLMM 73 (615)
Q Consensus 10 ~~~~~~lldcg~~-----------f~~~~~~~I-aVllSHah~dH~gaLP~L~~~----~gf~g~Iy~T~pT~~l~~lll 73 (615)
.++.+||||||+. |....+++| ||||||+|+||+||||||+++ .||++|||||+||++|++++|
T Consensus 22 ~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~~~~~pIy~T~~T~~l~~~~l 101 (514)
T d2i7xa1 22 FDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVST 101 (514)
T ss_dssp ETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHH
T ss_pred ECCeEEEEECCCCcCccchhhhhhhhhcCcccCCEEEECCCChHHHCchHHHHHhcccccCCCcCEEeCHHHHHHHHHHH
Confidence 3578899999962 233448899 999999999999999999865 367999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEeC
Q 007166 74 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYN 151 (615)
Q Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l~ 151 (615)
.|+++.++.. + ..+ .++| +||+++++++.+++|+|++++.
T Consensus 102 ~d~~~~~~~~----~------------------------------~~~----~~~~~~~dv~~~~~~~~~~~y~e~~~i~ 143 (514)
T d2i7xa1 102 IDSYASAGVI----G------------------------------PYD----TNKLDLEDIEISFDHIVPLKYSQLVDLR 143 (514)
T ss_dssp HHHHHHTTSS----S------------------------------SBT----TCCSCHHHHHHHHHTSEEECTTCCEEET
T ss_pred HHHHHHhhhh----c------------------------------ccc----cCCCCHHHHHHHHHhcccCCCCCeEEec
Confidence 9998765320 0 011 3678 9999999999999999999996
Q ss_pred C---cEEEEEeccccccceEEEEEEeCCeeEEEecCCCCC-CCCCCCCCCC-------CCCCCCEEEeCCCCCCCCCccc
Q 007166 152 G---ILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYR-------AIQGSDLILYSDLSSLDSTEDI 220 (615)
Q Consensus 152 g---~l~it~~~AGHiLGsa~~~I~~~~~~IvYtgD~s~~-~~~~~~~d~~-------~l~~~DvLI~es~~t~~~~~~~ 220 (615)
+ ++++++++|||+||||+|.|+.++++|+||||++.. +++..+.+.. .....|.+++++ ||+..
T Consensus 144 ~~~~~~~~~~~~aGHilGsa~~~I~~~~~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~--t~~~~--- 218 (514)
T d2i7xa1 144 SRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITT--LDRFG--- 218 (514)
T ss_dssp TTTTTEEEEEEECSSSTTCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEEC--CSCCC---
T ss_pred CCcccEEEEEccCCCCCCceEEEEEECCeEEEEEeccCCCCCccCCCccccccccccccccCCCEEEEEc--CCCCC---
Confidence 3 599999999999999999999999999999999875 4444433321 112345566666 55410
Q ss_pred cCCcccCCCCchhhhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCC----C-
Q 007166 221 DQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS----L- 295 (615)
Q Consensus 221 ~~~~~~~~~~~~e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~----l- 295 (615)
.+. ++++ +.++|++.|.+++++||+||||+||+||+|||+++|.++|++.. +
T Consensus 219 -------~~~--------------~~~~--~~~~l~~~i~~~~~~gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~ 275 (514)
T d2i7xa1 219 -------SSQ--------------PFKK--RSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHT 275 (514)
T ss_dssp -------CSS--------------CHHH--HHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------
T ss_pred -------CCC--------------ChHH--HHHHHHHHHHHHHhCCCEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCC
Confidence 111 1122 33568899999999999999999999999999999999998652 3
Q ss_pred cccEEEECchHHHHHHHHHHhHHhhhHHHHHHHh--cCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCC
Q 007166 296 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF--SGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWS 373 (615)
Q Consensus 296 ~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~--~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gm 373 (615)
++|||++|+++.+++++++.+.|||+++.++.+. .+.+||.+..+ . .+.+.+.+...++|||||||+||
T Consensus 276 ~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~~~~------~---~i~~~~~l~~~~~p~VIiat~~~ 346 (514)
T d2i7xa1 276 QVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSR------I---KIIAPNELSKYPGSKICFVSEVG 346 (514)
T ss_dssp CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCTTT------E---EECCGGGGGGCCSCEEEEEESCH
T ss_pred CceEEEEChHHHHHHHHHHHhHhhcCHHHHHHHhhhcCCCchhccCc------e---eccCHHHHHhccCCcEEEEcCCC
Confidence 4899999999999999999999999999888765 46678766433 1 13344566678999999999987
Q ss_pred CCcchHHHHHHHHcCCCCCcEEec--CCcchhcc---c------------------------------------------
Q 007166 374 LRLGPTIHLLRRWSGDHNSLLVLE--NEVDAELA---V------------------------------------------ 406 (615)
Q Consensus 374 L~~G~s~~ll~~~~~d~~N~IIl~--g~~~~~~~---l------------------------------------------ 406 (615)
|+++++|++|++||+|+|||| ||+.++.. +
T Consensus 347 ---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 423 (514)
T d2i7xa1 347 ---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETN 423 (514)
T ss_dssp ---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC--------CCCCEECCEEEEEEEEEEEESCSCCCC
T ss_pred ---chHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHhhhhhhccccccccccccccccCcceeecccccccccccccC
Confidence 999999999999999999998 66544210 0
Q ss_pred -------------------CCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCcccccccc----cCCceee
Q 007166 407 -------------------LPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----VTSFSVS 463 (615)
Q Consensus 407 -------------------~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l~----~~~~~v~ 463 (615)
....+++|+|..+.||||||+++|.++++.++|++||+|||+++++++++ +.|++++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~i~~SgHad~~el~~~~~~~~P~~vvlvHGe~~~~~~~a~~l~~~g~~v~ 503 (514)
T d2i7xa1 424 FDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVV 503 (514)
T ss_dssp CSCCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHHTTCEEE
T ss_pred cccccccccccccceeecccceEEEEEEEEEEEeeecCCHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHHHHHHCCCeEE
Confidence 01236899999999999999999999999999999999999999998887 4699999
Q ss_pred ecCCCcEEEeC
Q 007166 464 HYSENETIHIP 474 (615)
Q Consensus 464 ~p~~ge~i~l~ 474 (615)
+|++||+|+++
T Consensus 504 ~p~~g~~ie~~ 514 (514)
T d2i7xa1 504 NMPLNKIVEFS 514 (514)
T ss_dssp ECCSSCCEEEC
T ss_pred ecCCCCEEeeC
Confidence 99999999874
|
| >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} | Back information, alignment and structure |
|---|
| >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} | Back information, alignment and structure |
|---|
| >d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
|---|
| >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} | Back information, alignment and structure |
|---|
| >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
| >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
| >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} | Back information, alignment and structure |
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| >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} | Back information, alignment and structure |
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| >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
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| >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} | Back information, alignment and structure |
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