Citrus Sinensis ID: 007170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
Protein Sequence
MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKTENSSDSHLEPDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPLMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKPTSRRRKTRFGKAKASTRRSCPDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSNLNGKLQQKRSFNEEEIKISQKQKENVGLQSRDSAPTSIISAPGQLINPCQASSVVNRSVIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKALNKCGLVQKTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPLLSDSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSNSGENTSPDKTIVKRRVTEKENDSQEPEKPTLIKESSRHSRRVAQVARQPCMDNYITFY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccHHHHHHcccHHHcccHHHHHHHHHHHHHccccccccccccccEEEEEEEEEcccccccccccccccHcccHEEccccccccccEEccccccccEEcccccccccccccccEEccccccccccEEEEEEccccccccEEEEccccccccccccccHHHHHHHHHHccccccHccccccccccccEEEccccccccccccccccccccccccEEEcccEEEEEEEcccccccccccccccccccccccccccccEEEccccccccccccEEEEEEEccccccEEEcccHcHHccccccccccccccccccccccccccccEEcccccccHHHcHcccccccccccccccccEEEEEEHHcHHHHcccccccccHcccHHHHHHcccccccccccccccccccccccHHHHHHHcccccccEEEEc
Coil and Loop (DISEMBL)
MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEkvknnplqpvngqttkedayshedVKVEAITRSISNSHLEAvtacdmensplnlrildnrccstiqktenssdshlepddhtpnivstimkepepfrngCTQRIRALESnllngklpqlgnedgqctPLMIEAIDKAvgkctapapppktknmdvtnkfsggevknlvkptsrrrktrfgkakastrrscpdqpkiasclssapsccktysvngnvksKVSAhirpsikadnrdnakicsnlngklqqkrsFNEEEIKISQKQKenvglqsrdsaptsiisapgqlinpcqassvvnRSVIYSFAkrgnvksseaglgtadneakmkpllrldpgltlirsgvdpvsgsknVTVSVKALNkcglvqkteEKDAELksesalvkpdggaveNSMVVCSElggevvnepllsdskdakssietdespsepdfnRVLKYTFQrkrkkdsmsnsgentspdktIVKRRVTekendsqepekptlikesSRHSRRVAQVArqpcmdnyitfy
Flexible Loop (DISEMBL)
MAESEKMVALKKAYADIILNTAREAAARIMASERQALrfekdlsntkdeALRLLVRVKQmidsttkeaeitsltkqrkvDELEAQLNEAEDVITDLRSELRWVTDklekvknnplqpvngqttkedayshEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKtenssdshlepddHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPLMIEAIDKAVGKCTApapppktknmdvtnkfsggevknlvkptsrrrktrfgkakastrrscpdqpkiaSCLSSAPSCCKTYsvngnvkskvsahirpsikadnrdnaKICSNlngklqqkrSFNEEEIKISqkqkenvglqsRDSAPTSIISAPGQLINPCQASSVVNRSVIYSFakrgnvksseaglgtadneakmkpllrLDPGLTLIrsgvdpvsgsknvtvsVKALnkcglvqkteekdaelksesalvkpdggavENSMVVCSELGGEVVNEPLLSDSKDAKssietdespsepdfnrvLKYTfqrkrkkdsmsnsgentspdktivkrrvtekendsqepekptlikessrhsrrvaqvarqpcmdnyitfy
Low Complexity Region (SEG)
MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKTENSSDSHLEPDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPLMIEAIDKAVGKCtapapppktkNMDVTNKFSGGEVKNLVKPTSRRRKTRFGKAKASTRRSCPDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSNLNGKLQQKRSFNeeeikisqkqkeNVGLQSRDSAPTSIISAPGQLINPCQASSVVNRSVIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKALNKCGLVQKTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPLLSDSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSNSGENTSPDKTIVKRRVTEKENDSQEPEKPTLIKESSRHSRRVAQVARQPCMDNYITFY
Disordered region (IsUnstruct)
********ALKKAYADIILNTAREAAARIM*******************ALRLLVRVKQMI*****************************DVITDLRSELRWVTDK******************************AIT**I*NSHLEAVTACDMENSPLNLRILDNRCCSTI**********************************CTQRIRALESNLLN***********QCTPLMIEAIDK********************************************************************SCCKTYSVN***********************************************************************QLINPCQASSVVNRSVIYSFAK***********************LRLDPGLTLIRSGVDPV***KNVTVSVKALNKCGLV****************************VVCSE*************************************************************************************************************
Disordered Region (DISOPRED)
***********KAYADIILNTAREAA*********************DEALRLLVRVKQMID****************************DVITDLRSELRWVT*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************Y***********************************************************RQPCMDNYITFY
Disordered Region (DISEMBL)
********ALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQ************DDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPLMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLV****************************ASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSNLNGKLQQKRSFNEEEIKIS**************APTSIISAPGQLINPCQASSVVNRSVIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKALNKCGLVQKT**********SALVKPDGGAVENSMVVCSELGGEVVNEPLLSD*****************DFNRVLKYTFQ*****************DKTIVKRR*****************************VARQPCMDNYITFY
Disordered Region (DISPRO)
****EKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN************************************AVTACDMENSPLNLRILDNRCCSTIQKTENSSDSHLEPDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPLMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNL*K*T***RKTRFGKA**STRRSCPDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSNLNGKLQQKRSFNEEEIKISQKQKENV*LQSRDSAPTSIISAPGQLINPCQASSVVNRSVIYSFAKRGNV***************MKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKALNKCGLVQKTEEKD******S**V*******************EVVNEPLLSDSKDAKS************FNRVLKYTFQRKRKKD**********************************************AQVARQPCMDNYITFY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAESEKMVALKKAYADIILNTAREAAARxxxxxxxxxxxxxxxxxxxxxALRLLVRVKQMIDSTTKEAEITxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPLQPVNGQTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKTENSSDSHLEPDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPLMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKPTSRRRKTRFGKAKASTRRSCPDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSNLNGKLQQKRSFNEEEIKISQKQKENVGLQSRDSAPTSIISAPGQLINPCQASSVVNRSVIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKALNKCGLVQKTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPLLSDSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSNSGENTSPDKTIVKRRVTEKENDSQEPEKPTLIKESSRHSRRVAQVARQPCMDNYITFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
255552770	611	hypothetical protein RCOM_0853160 [Ricin	0.910	0.916	0.431	1e-105
224055519	616	predicted protein [Populus trichocarpa]	0.939	0.938	0.437	1e-101
224140893	595	predicted protein [Populus trichocarpa]	0.912	0.942	0.438	9e-97
356573435	533	PREDICTED: uncharacterized protein LOC10	0.786	0.908	0.370	5e-73
297818446	548	predicted protein [Arabidopsis lyrata su	0.785	0.881	0.353	1e-54
255540823	559	conserved hypothetical protein [Ricinus	0.360	0.397	0.465	2e-45
356512825	523	PREDICTED: uncharacterized protein LOC10	0.364	0.428	0.433	1e-43
359491625	531	PREDICTED: uncharacterized protein LOC10	0.364	0.421	0.477	7e-40
297733859	422	unnamed protein product [Vitis vinifera]	0.364	0.530	0.477	8e-40
449487869	487	PREDICTED: uncharacterized protein LOC10	0.515	0.650	0.377	2e-38

>gi|255552770|ref|XP_002517428.1| hypothetical protein RCOM_0853160 [Ricinus communis] gi|223543439|gb|EEF44970.1| hypothetical protein RCOM_0853160 [Ricinus communis]

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 274/635 (43%), Positives = 352/635 (55%), Gaps = 75/635 (11%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           M ESEKM ALKKAYA++ILNTA+EAA R+MASE+ A+R + +L  TKDEALRLLVR+KQM
Sbjct: 1   MVESEKMAALKKAYAEMILNTAKEAATRVMASEKIAIRCKHELFATKDEALRLLVRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
           ID+   EAEI S ++Q K+DELEAQL EAE VI DLR EL WV DKLEKV++N +QP NG
Sbjct: 61  IDAKIIEAEIASSSQQTKIDELEAQLQEAEGVIIDLREELNWVRDKLEKVRSNKVQPFNG 120

Query: 121 QTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKTENSS 180
           +   +D                                     + DN+ C+  Q  E  S
Sbjct: 121 KIKMDD------------------------------------ELFDNKYCNR-QHNEKLS 143

Query: 181 DSHLE-PDDHTPNIVSTIM--KEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCT-- 235
              LE        + S I+  KEPE +RNG TQRIRALE N+L GKLP  G  D      
Sbjct: 144 VPQLENHSSQNAELASIIIRNKEPELYRNGFTQRIRALEGNILAGKLPPSGELDEYSIRK 203

Query: 236 -PLMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVK-PTSRRRKTRFGKAKAS 293
             L+I+  +K     T P+   +TKN++     SG +++  VK    RRR+ RFGK KA 
Sbjct: 204 RELIIKESNKNDVNLTLPSL--ETKNLETVKSGSGEQIRKHVKVHILRRRRARFGKPKAK 261

Query: 294 TRRSCPDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSNLNGK 353
            + S P Q   +    S  S CK Y ++ + K    + + PSIK DN D  K  + L  K
Sbjct: 262 CKSS-PHQLMKSYQPLSFLSRCKRYLLSRDPKRDDHSCVLPSIKTDNVDVNKSWNELEEK 320

Query: 354 LQQKRSFNEEEIKISQKQKENVGLQSRDSAPTSIISAPGQ--LINPCQASSVVNRSVIYS 411
           L  +     +E  I  + K    LQS D+  TS+ S P Q     PC   S +      S
Sbjct: 321 LHCQSFCFMDEKNIDSEGKRQRKLQSWDATSTSLTSCPEQHETFQPC---STLCCCKTCS 377

Query: 412 FAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKALNKCG 471
            +   N++  E      DNE K+KPL  LDPGLTLI+SGVDPVSG  +V VSVKALNK G
Sbjct: 378 LSLYDNLEHGEDRSKMTDNEVKLKPLPCLDPGLTLIKSGVDPVSGFTDVAVSVKALNKPG 437

Query: 472 LVQKTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPLL-------------- 517
           L Q T  KD EL     LVK       NS   C E   E+VN P L              
Sbjct: 438 LAQNTSNKDMELVD--VLVKQKCETTVNSSFSCCESNSEMVNVPPLHSDSADLKVSKDAT 495

Query: 518 -------SDSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSNSGENTSPDKTIVK 570
                  SDSKDA++S +   SPS+ + N +LKYTFQRKRKK+++++S +N+S  ++ VK
Sbjct: 496 VDVSVMSSDSKDAQASGKFKVSPSQVNNNGLLKYTFQRKRKKEALNSSDQNSSIKRSAVK 555

Query: 571 RRVTEKENDSQEPEKPTLIKESSRHSRRVAQVARQ 605
           RR  E++ND  +P+  +L  ESSR SRR+AQVARQ
Sbjct: 556 RRAGERQNDLSDPQTSSLTNESSRDSRRLAQVARQ 590

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055519|ref|XP_002298519.1| predicted protein [Populus trichocarpa] gi|222845777|gb|EEE83324.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 274/627 (43%), Positives = 368/627 (58%), Gaps = 49/627 (7%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           MAESEK+VALKKAYADIILNTA+EAA R+M SER+ALR+  DL N+KDEALRLL+R+KQM
Sbjct: 1   MAESEKLVALKKAYADIILNTAKEAANRVMESERKALRYHHDLCNSKDEALRLLLRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
           ID+ T EAEITS  +Q K+DELEAQL EAE VI DLR ELRW+ D+LEKV+N+  QP NG
Sbjct: 61  IDAKTIEAEITSSRQQSKIDELEAQLQEAEGVIIDLRDELRWLRDELEKVRNSQGQPSNG 120

Query: 121 QTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKTENSS 180
           +  KE+  S++++  E I  S+++   + V   D++++ L+ R  +++C +T +  E  +
Sbjct: 121 KLVKENESSNQNLTSEPIILSMTDLSPQTVATSDVKSAQLDQRNFNDKCRNTTEDIEQLT 180

Query: 181 DSHLE-PDDHTPNIVSTIM--KEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPL 237
             + E    H  ++ + +M  KEPE +RNGCTQRIRALE NL   +L   G    Q + +
Sbjct: 181 VLNFENYSSHDADLAAIMMTNKEPELYRNGCTQRIRALEGNLFASRLTPPGVVAEQESLI 240

Query: 238 MIEAIDKAV----GKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKPT-SRRRKTRFGKAKA 292
             E I KA     GKC+ P+  PKTK ++ TN F G E +  VK   SRRRK+R  KAK 
Sbjct: 241 KNEVISKASNMDEGKCSVPS--PKTKALEKTN-FLGEEGRKRVKVCPSRRRKSRSAKAKV 297

Query: 293 STRRSC-----PDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKIC 347
             R+SC     P QP       S  S CKT SVNG VKS   +     +K  N D  K  
Sbjct: 298 K-RKSCLNVKKPYQP------PSIVSRCKTNSVNGTVKSDGRSCTLLLVKPGNMD-MKNP 349

Query: 348 SNLNGKLQQKRSFNEEEIKISQKQKENVGLQSRDSAPTSIISAPGQLINPCQASSVVNRS 407
           S +  K Q+       E+ + + ++     QS +S  TS      Q     Q SSV+   
Sbjct: 350 SKVEEKSQETNDCLTAEMIVPEGKRPRTE-QSTNSVSTSSTVPLVQHSEFLQPSSVLTHC 408

Query: 408 VIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKAL 467
             YS     NVKS+E      +N+ K+KPL RLDPGLTLIR G+D +SGS N  VSVKA 
Sbjct: 409 KTYSLLLHDNVKSNEDRSKVTENDVKLKPLPRLDPGLTLIRGGMDSISGSTNAKVSVKAP 468

Query: 468 NKCGLVQKTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPLL---------- 517
            + G+ Q    KD E   +  LVK +  +  N     +E   ++VN PL+          
Sbjct: 469 CRSGVAQTDANKDMEGVDD--LVKEECDSNRNPTFPSNESDDQMVNVPLVYSNLKDTKTS 526

Query: 518 -----------SDSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSNSGENTSPDK 566
                      SD + AKSS++   SPS+ D NR+LKYTFQRK KK+++S+  +NTS +K
Sbjct: 527 EETTVSVMLVHSDIEVAKSSMQPYVSPSQSD-NRLLKYTFQRKHKKEALSSPDKNTSVEK 585

Query: 567 TIVKRRVTEKENDSQEPEKPTLIKESS 593
           + +KR+  E    S EP+K +LI ESS
Sbjct: 586 SNLKRKAEENLEYSPEPQKSSLINESS 612

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140893|ref|XP_002323812.1| predicted protein [Populus trichocarpa] gi|222866814|gb|EEF03945.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 269/613 (43%), Positives = 360/613 (58%), Gaps = 52/613 (8%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           MAESEK+VALKKAYADIILNTA+EAA+R+M SER+ LR+  DL ++KDEALRLL+R+KQM
Sbjct: 1   MAESEKLVALKKAYADIILNTAKEAASRVMESERKGLRYHHDLCSSKDEALRLLLRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
           ID+   EAEITS ++Q K+DEL+AQL EAE VI DLR+ELRWV D+LEKV+N+ +QP NG
Sbjct: 61  IDAKAIEAEITSASQQSKIDELDAQLQEAEGVIIDLRAELRWVRDELEKVRNSQVQPSNG 120

Query: 121 QTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKTENSS 180
           +  KE+  SH+ +  E I  S+SN   + V   +++ + L+ R   N+CC+T  + +  S
Sbjct: 121 EAVKENESSHQHLTSEPIVLSLSNLPPQTVATSNVKGTLLDQRNF-NKCCNT--EDQQLS 177

Query: 181 DSHLE-PDDHTPNIVSTIM--KEPEPFRNGCTQRIRALESNLLNGKLP--QLGNEDGQCT 235
            S LE       ++ S  M  KEPE +RNGCTQRIRA E N    KLP   +G E     
Sbjct: 178 VSPLENYSARNADLASITMANKEPELYRNGCTQRIRASEGNAFASKLPPSDVGVEQQSLI 237

Query: 236 P--LMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKP-TSRRRKTRFGKAKA 292
              ++++A +   GKCT  +  PKTKN+   N FSG EV+N VK  +SR+++ RF KAKA
Sbjct: 238 KNEVIVKASNGDEGKCTETS--PKTKNVGKMN-FSGEEVRNHVKVCSSRQKRGRFAKAKA 294

Query: 293 STRRSCPDQPKIASCLSSAPSCC---KTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSN 349
             R+SCP    I       PS     KT SVNG VKS       P +K  N+D  K    
Sbjct: 295 K-RKSCP----IVRKPYQPPSIVSRRKTNSVNGTVKSDQHLCTLPPVKPSNQDMKKNPIE 349

Query: 350 LNGKLQQKRSFNEEEIKISQKQK---ENVGLQSRDSAPTSIISAPGQLINPCQASSVVNR 406
           L  +L +       E+ + + ++   E +   S  S+ +  +    Q    CQ   V+  
Sbjct: 350 LEEELLETNDCLAAEMIVPEGKRPRTERITTSSSSSSSSPSV----QHSEFCQKPFVLTP 405

Query: 407 SVIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKA 466
              YSF   GNVKS E      +N  K+KPL  L P LTLIR G+D + GS NV VSVKA
Sbjct: 406 CKNYSFLLHGNVKSDEVQSKITENVVKLKPLPSLGPVLTLIRGGLDSICGSTNVEVSVKA 465

Query: 467 LNKCGLVQKTE-EKDA---------ELKSESALVKP---DGGAVENSMVVCSELGGEVVN 513
           L  CG V+ T+ +KD          EL S  + + P       + N  +V S L G   +
Sbjct: 466 L--CGSVEDTDADKDMGFVDELAKEELDSNQSPIVPSYESNAQMINVPIVFSNLKGAKTS 523

Query: 514 E------PLL-SDSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSNSGENTSPDK 566
           E      PL+ SD K AKSS+E++  PS+ D NR+LKYTFQRK KK+++S+S  N S +K
Sbjct: 524 EEITVSVPLVPSDIKVAKSSLESNVFPSQSD-NRLLKYTFQRKHKKEAVSSSDNNASGEK 582

Query: 567 TIVKRRVTEKEND 579
             +KR+  EK  D
Sbjct: 583 NKLKRKAEEKPED 595

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573435|ref|XP_003554866.1| PREDICTED: uncharacterized protein LOC100809847 [Glycine max]

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 217/585 (37%), Positives = 311/585 (53%), Gaps = 101/585 (17%)

Query: 3   ESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMID 62
            S +MVALKKAYAD+ILNT +EAA R+M +ER+AL F+++L+++K+EAL +L+R+KQM+D
Sbjct: 32  HSHEMVALKKAYADVILNTVKEAAGRVMVAERRALMFQQELASSKEEALHMLMRLKQMMD 91

Query: 63  STTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQT 122
           + T EAE  SL +QRK+DELEAQLNEAED++TDLR+EL+ V  +LE  +NN +QP+NGQ 
Sbjct: 92  AKTAEAEKASLEQQRKIDELEAQLNEAEDIVTDLRAELKLVYLELETARNNQVQPLNGQN 151

Query: 123 TKEDAYSHEDVKVEAITRSISNSH--LEAVTACDMENSPLNLRILDNRCCSTIQKTENSS 180
            K+     E  K E    SIS+ H  LE VT+CD+ N  L + +LDN+CC++ Q+TE   
Sbjct: 152 EKQVVTFQESAKPEI---SISSPHKELECVTSCDVANKSLTMNVLDNKCCNSKQQTEQLC 208

Query: 181 DSHLEPD-DHTPNIVSTIM--KEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPL 237
             +LE    H  +  S I   KEPE  RNG TQR+RALE NLL+ KL            L
Sbjct: 209 IYNLEDSCGHNSDFASIITRSKEPELRRNGFTQRVRALEGNLLDEKL------------L 256

Query: 238 MIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKPTSRRRKTRFGKAKASTRRS 297
             +  ++  G           K + +  K S G+V      T +    +  K        
Sbjct: 257 KQDVHNQHYG-----------KKLGIIAKDSNGQVAKYSALTEKMEIKKHVK-----HHK 300

Query: 298 CPDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICSNLNGKLQQK 357
            P +   +   S   S CK + +N N KS       PSIK              G + + 
Sbjct: 301 IPKRKIYSYYWSRFLSSCKIH-LNDNCKSSKGVCFLPSIKL-------------GAISKW 346

Query: 358 RSFNEEEIKISQKQKENVGLQS---RDSAPTSIISAPGQLINPCQASSVVNRSVIYSFAK 414
           +S         +++  ++G++S   R   P+  +          Q SSV N         
Sbjct: 347 KS--------KRRRHRHLGMKSFAFRSCKPSFFLK---------QCSSVCN--------- 380

Query: 415 RGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGSKNVTVSVKALNKCGLVQ 474
             N K  E   G     AKMK L    P LT     V+PV  +  VT S++A+NK  LV+
Sbjct: 381 --NEKCCEDESG-----AKMKSL----PPLT----DVEPVHRTIGVTESIQAVNKFELVE 425

Query: 475 KTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPLL-SDSKDAKSSIETDESP 533
           K  EKD+E      L+  +  A +N     S++  E  + P   +D +DAK+  + D S 
Sbjct: 426 KAIEKDSE------LLNLEENAAQNLTGPSSDMKVEGFDFPSTDTDLEDAKAFEKNDRSA 479

Query: 534 SEPDFNRVLKYTFQRKRKKDSMSNSGENTSPDKTIVKRRVTEKEN 578
           S+ + +R LKYTFQRKRKK+S+ N+ +N   +K  V+RRV +K+N
Sbjct: 480 SQVNDSRPLKYTFQRKRKKESLGNADQNIDSEKRTVERRVEDKQN 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818446|ref|XP_002877106.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322944|gb|EFH53365.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 287/577 (49%), Gaps = 94/577 (16%)

Query: 3   ESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMID 62
           ES+K  ALK AYA++ILNTA+E+AAR++ SER++ +F  DL  TKDEALRLLVR+KQMID
Sbjct: 39  ESDKTTALKNAYAEMILNTAKESAARVIVSERKSAQFHHDLHGTKDEALRLLVRLKQMID 98

Query: 63  STTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQT 122
           + T EAEITS  +QR++D LEAQL EAED+ITDLR ELRWV DKLEK + +         
Sbjct: 99  AKTIEAEITSSNQQRQIDVLEAQLQEAEDIITDLRLELRWVRDKLEKARKD--------- 149

Query: 123 TKEDAYSHEDVKVEAITRSISN------SHLEAVTACDMENSPLNLRILDNRCCSTIQK- 175
             ++  S  +V V  + +S  N          +VT     +S LN   L +  C   +  
Sbjct: 150 --QETISAPEVVVGNVYQSSLNDDECCGDETISVTEVVASDSLLNQSSLYSDECGNDRML 207

Query: 176 -----TENSSDSHLEPDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNL----------L 220
                 E S     E D +  N      K+ E  RNGCTQRI ALES            +
Sbjct: 208 FDGLGVETSKVCESELDANIGN------KKLELSRNGCTQRIHALESKASVSASEEERRI 261

Query: 221 NGKLPQ--LGNEDGQCTPLMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKP 278
             K  +  L + + +C  L + A +  V     P  P  +  +  + K  G         
Sbjct: 262 TEKESEENLSSGNTRCLVLALRAKNAEV----IPLKPSNSLGIKKSCKLQG--------- 308

Query: 279 TSRRRKTRFGKAKASTRRSCPDQPKIASCLSSAPSCCKTYSV-NGNVKSKVSAHIRPSIK 337
              RRKTR+ K  AS  RS      I  C S +   C   S+ N + +  +  H+  S++
Sbjct: 309 ---RRKTRWSKRIASLVRS--QSQLIKPCQSQSDILCSKKSLENSDGEDSMETHL--SVE 361

Query: 338 ADNRDNAKICSNLNGKLQQKRSFNEEEIKISQKQKENVGLQSRDSAPTSIISAPGQLINP 397
            +   +   C  L   LQ     N + I I +K K +  ++  D      ++    ++  
Sbjct: 362 NEEVVSLNTCKGLEEHLQH----NVDGIGIIRKGKRSKNVEHLDG-----LNHTDHVVEA 412

Query: 398 CQASSVVNRSVIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDPGLTLIRSGVDPVSGS 457
           CQ S++V+           +V+  E    T  NE K+KP  RLDP LT I   VDP SGS
Sbjct: 413 CQESNLVSI----------DVEDGENKADTPKNETKIKPHPRLDPVLTSI---VDPTSGS 459

Query: 458 KNVTV-SVKALNKCGLVQKTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPL 516
           K+ TV SV A N      ++ +KD + + E  LVK +G   E+S+V  +++  + +  P 
Sbjct: 460 KHATVISVNAAN------RSTDKDLKSRKEDVLVKCEGE--EDSVVPATKMSSDQLVNPC 511

Query: 517 LSDSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKD 553
                 A  S +  ESP   D NR++KYTFQRKRK+D
Sbjct: 512 SDLKATAVVSDQISESP-RTDGNRLVKYTFQRKRKRD 547

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540823|ref|XP_002511476.1| conserved hypothetical protein [Ricinus communis] gi|223550591|gb|EEF52078.1| conserved hypothetical protein [Ricinus communis]

 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/243 (46%), Positives = 153/243 (62%), Gaps = 21/243 (8%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           MA+SEK+ ALKKAYADIILN+A+EAAARIM SER+A R++++L   KDEALR+L+R+KQM
Sbjct: 1   MADSEKLTALKKAYADIILNSAKEAAARIMVSERKAQRYQRELFAAKDEALRMLLRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
           +DS   EAE+ SL +QR+++ELEAQL EAED++ DLRSELR + D+LEKV N+ ++P+  
Sbjct: 61  LDSKVSEAEMASLNQQRRIEELEAQLGEAEDIVKDLRSELRELQDELEKVANSQMRPLEE 120

Query: 121 Q------TTKEDAYSHEDVKVE-AITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTI 173
           Q      TT   A+    +    ++  S   S  + V   + +N  LN          T 
Sbjct: 121 QNPEGERTTLVTAFEENRLSTSGSVIPSGPASQSDPVITLETKNLTLN---------GTC 171

Query: 174 QKTENSSDSHLEPDD---HTPNIVSTIM--KEPEPFRNGCTQRIRALESNLLNGKLPQLG 228
             T   S+     D+     P+  S +M  KEPE +RNGCTQRIRA E +LL G L   G
Sbjct: 172 AGTRLYSEGDCRKDNCFVCNPDFASIVMRSKEPELYRNGCTQRIRAFERSLLGGNLSLSG 231

Query: 229 NED 231
            +D
Sbjct: 232 QDD 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512825|ref|XP_003525116.1| PREDICTED: uncharacterized protein LOC100783348 [Glycine max]

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/240 (43%), Positives = 152/240 (63%), Gaps = 16/240 (6%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           M +SEK+ ALKKAYADIILNTA+EAAARIM SER+  RF+++L +TK+EALR+L+R+KQM
Sbjct: 1   MEDSEKLTALKKAYADIILNTAKEAAARIMVSERKVTRFQQELVSTKEEALRMLLRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
            DS   EAE+ SL +Q+K++ELEAQL EAE+++ DLR+ELR    +LE V  + +QP+  
Sbjct: 61  FDSKVSEAELMSLNQQKKIEELEAQLQEAEEIVRDLRAELRETQAELENVTKHQMQPLVE 120

Query: 121 QTTKEDAYSHEDV----KVEAITRSISNS---HLEAVTACDMENSPLNLRILDNRCCSTI 173
           Q T+ +  + E      +++    SI ++     E+V+  +  N  +N     ++ C + 
Sbjct: 121 QNTEAEVAAQESFLQKNRLDPYDGSIYSAPGLQFESVSISENRNPIVNGSNDSSKFCGSH 180

Query: 174 QKTENSSDSHLEPDDHTPNIVSTIM--KEPEPFRNGCTQRIRALESNLLNGKLPQLGNED 231
             T N          H P+  S ++  KEP+ +RNGCTQRI A E +L +G +   GN D
Sbjct: 181 DHTNNCY-------IHNPDFASIVIRRKEPKLYRNGCTQRIHAFERSLFDGNMSVSGNLD 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491625|ref|XP_002280572.2| PREDICTED: uncharacterized protein LOC100246721 [Vitis vinifera]

 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 160/243 (65%), Gaps = 19/243 (7%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           M +SEK+ ALKKAYA+ ILNTA+EAAARIM SER+AL  ++DL   K+EALR+LVR+KQM
Sbjct: 1   MEDSEKLTALKKAYAETILNTAKEAAARIMVSERKALSSQQDLFMAKEEALRMLVRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
           +DS   EA++ SL++Q+K++ELEAQL EAED++ +LR ELR V + LEK+    LQ ++ 
Sbjct: 61  MDSKIGEAKMISLSQQKKIEELEAQLEEAEDIVRELREELREVQNALEKMTKKQLQALDE 120

Query: 121 QTTKEDAYSH----EDVKVEAITRSI---SNSHLEAVTACDMENSPLNLRILDNRCCSTI 173
           ++ K +A +     ++ K+ A    I   + S  E VT  D++NS  N R   N+C    
Sbjct: 121 KSFKGNAGTEVEAPQEYKLSASASLILPRTGSRPEPVTTSDLKNSTFNKRNEGNKCY--- 177

Query: 174 QKTENSSDSHLE----PDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGN 229
                ++DS++E     +    +IV T  KEPE +RNGCTQRIRA ES+LL GKL   G 
Sbjct: 178 ----GANDSYMENCFVANRDFASIV-TRSKEPELYRNGCTQRIRAFESSLLEGKLSLSGQ 232

Query: 230 EDG 232
            DG
Sbjct: 233 VDG 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733859|emb|CBI15106.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 116/243 (47%), Positives = 160/243 (65%), Gaps = 19/243 (7%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           M +SEK+ ALKKAYA+ ILNTA+EAAARIM SER+AL  ++DL   K+EALR+LVR+KQM
Sbjct: 1   MEDSEKLTALKKAYAETILNTAKEAAARIMVSERKALSSQQDLFMAKEEALRMLVRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
           +DS   EA++ SL++Q+K++ELEAQL EAED++ +LR ELR V + LEK+    LQ ++ 
Sbjct: 61  MDSKIGEAKMISLSQQKKIEELEAQLEEAEDIVRELREELREVQNALEKMTKKQLQALDE 120

Query: 121 QTTKEDAYSH----EDVKVEAITRSI---SNSHLEAVTACDMENSPLNLRILDNRCCSTI 173
           ++ K +A +     ++ K+ A    I   + S  E VT  D++NS  N R   N+C    
Sbjct: 121 KSFKGNAGTEVEAPQEYKLSASASLILPRTGSRPEPVTTSDLKNSTFNKRNEGNKCY--- 177

Query: 174 QKTENSSDSHLE----PDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLPQLGN 229
                ++DS++E     +    +IV T  KEPE +RNGCTQRIRA ES+LL GKL   G 
Sbjct: 178 ----GANDSYMENCFVANRDFASIV-TRSKEPELYRNGCTQRIRAFESSLLEGKLSLSGQ 232

Query: 230 EDG 232
            DG
Sbjct: 233 VDG 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487869|ref|XP_004157841.1| PREDICTED: uncharacterized protein LOC101224767 [Cucumis sativus]

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 192/352 (54%), Gaps = 35/352 (9%)

Query: 1   MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
           M +SEK+ ALKKAYADIILNTA+EAAARIM SER A+R +++LS TKDEA R+L+R+KQM
Sbjct: 1   MEDSEKLTALKKAYADIILNTAKEAAARIMVSERNAIRCQQELSTTKDEAFRILLRLKQM 60

Query: 61  IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
           +DS   EAEI SL +++K++ELEAQL EAED++ +LR +L+ V D+LE V+N  ++P + 
Sbjct: 61  LDSKVSEAEIVSLNQKKKIEELEAQLEEAEDIVRELRVQLQEVQDELEHVRNKNVEPQDK 120

Query: 121 QTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRCCSTIQKTENSS 180
           Q    +  S E         +  NSH E +   D+ +S LN   LD+         E+ +
Sbjct: 121 QNLANNIVSPE---------AFPNSH-EKIAPYDI-SSTLNGTCLDSW-------PESKN 162

Query: 181 DSHLEPDDHTPNIVSTIM--KEPEPFRNGCTQRIRALESNLLNGKLPQLGNEDGQCTPLM 238
           DS ++      +  S +M  KEPE +RNGCTQR+RA E    +GK+   G    +     
Sbjct: 163 DSQMDKGQVHRDFASMVMRSKEPELYRNGCTQRVRAFERKSFDGKVCVTGQ--AEDVKNK 220

Query: 239 IEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKPTSRRRKTRFGKAKASTRRSC 298
           +  +D+  GK        K  N+    K S  E+K L K  SR  +    K+    R+  
Sbjct: 221 VCNMDEEEGKLMRKTNTTKVDNISGERKNS-NEIKALPKLLSRDTQVPILKSLRRKRKRA 279

Query: 299 P--DQPKIASCLSSAPSCCKTYSVNGNVKSKVSAHIRPSIKADNRDNAKICS 348
              ++ K+ + L   P+ CK+  +          H   S+  DN D     S
Sbjct: 280 TRYNKKKVLTVLDDTPNQCKSPDL----------HCSESLSVDNDDAGNFLS 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
TAIR|locus:2037261	400	AT1G74860 "AT1G74860" [Arabido	0.373	0.575	0.369	2.4e-40
TAIR|locus:2011231	319	AT1G19010 "AT1G19010" [Arabido	0.265	0.510	0.449	3.7e-39

TAIR|locus:2037261 AT1G74860 "AT1G74860" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
 Identities = 89/241 (36%), Positives = 139/241 (57%)

Query:     1 MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
             MA+ E + ALK+AYAD ILNT +EAAAR+M SE++A R++++L   ++EAL  LVR+KQM
Sbjct:     1 MADPETLAALKRAYADTILNTTKEAAARVMVSEKKARRYQQELVTVRNEALHTLVRLKQM 60

Query:    61 IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
             +DS  KE E+ SL +Q+KV+ELEAQL EAED++ +LR ELR + D+L+K+ +   + +  
Sbjct:    61 LDSKVKETEMQSLKQQQKVEELEAQLGEAEDIVGELRLELRVLHDELKKLTDGQ-KHLKK 119

Query:   121 QTTKEDAYSHEDVKVEAITR-SISNSHLEAVTAC-DME-NSPLNLRILDNRCCSTIQKTE 177
                +   +++ D  V  +   S S+ + EAV  C  +E N  +    +     + I    
Sbjct:   120 NHEENLCWNNRDAAVSVMPEVSCSHENTEAVGFCIPVEQNGSVVANGIKVPSLTRINSIN 179

Query:   178 NSSDSHLEPDDHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNGKLP---QLGN-EDGQ 233
               S    +   H   + S + K  E    G  Q I  ++S++ NG L    ++G+  DG 
Sbjct:   180 RCSYKDNKDQCHY-TLPSILTKRRET--EGLAQMIHTVDSSMANGVLSSSVEVGDVNDGV 236

Query:   234 C 234
             C
Sbjct:   237 C 237

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011231 AT1G19010 "AT1G19010" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 3.7e-39, Sum P(2) = 3.7e-39
 Identities = 76/169 (44%), Positives = 113/169 (66%)

Query:     1 MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60
             M + EK+ ALKKAYA+ ILNTA+EAAAR+M +ER+A  ++++L++ +DEALR  +R+KQ+
Sbjct:     1 MTDPEKLTALKKAYAETILNTAKEAAARVMITERKARGYQQELASVRDEALRACLRLKQI 60

Query:    61 IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120
              DS  KEAE+ SL KQ+K++ELEAQL EAED++ +LR+ELR     LEK+ N        
Sbjct:    61 YDSKVKEAEMISLQKQQKIEELEAQLGEAEDIVGELRTELRESRYLLEKLANG----CQT 116

Query:   121 QTTKEDAYSHEDVKVEAITRSISNSHLEAVTACDMENSPLNLRILDNRC 169
               +KE+   +E V +E   R  S++H  +V A  ++    +  +  NRC
Sbjct:   117 NLSKEEKAPNEAVSLEV--REDSSNHERSVVASVIKPHMSDRDLSINRC 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	615
PRK10698	222	phage shock protein PspA; Provisional	93.32
PRK00846	77	hypothetical protein; Provisional	92.73
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	91.91
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	91.52
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.35
PRK02793	72	phi X174 lysis protein; Provisional	90.5
PRK02119	73	hypothetical protein; Provisional	89.81
PRK00295	68	hypothetical protein; Provisional	89.01
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	88.83
PRK04325	74	hypothetical protein; Provisional	86.49
PRK04406	75	hypothetical protein; Provisional	86.35
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	84.3
KOG2008	426	consensus BTK-associated SH3-domain binding protei	84.27
PRK09039	343	hypothetical protein; Validated	83.22
PRK00736	68	hypothetical protein; Provisional	81.85

>PRK10698 phage shock protein PspA; Provisional

Probab=93.32  E-value=2.6  Score=41.99  Aligned_cols=107  Identities=13%  Similarity=0.237  Sum_probs=61.3

Q ss_pred             CcchHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHH-HHHHHHHHhhhhhchhhhHHHHhhHH
Q 007170            1 MAESEKM-----VALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKD-EALRLLVRVKQMIDSTTKEAEITSLT   74 (615)
Q Consensus         1 Maese~l-----~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~Ke-eaL~~LlRLKqm~Daki~EaE~~sl~   74 (615)
                      |+||+++     .-|..++.+     ++.+.|++|+.+++..+-..++...-+ =-=++.+-|.+-=+.--.+|=..-..
T Consensus        22 aEDP~k~l~q~i~em~~~l~~-----~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~   96 (222)
T PRK10698         22 AEDPQKLVRLMIQEMEDTLVE-----VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQK   96 (222)
T ss_pred             hcCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4677764     223333333     388899999887765432222211100 01112222332222222333233334


Q ss_pred             hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170           75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN  112 (615)
Q Consensus        75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~  112 (615)
                      ...++..|++|+...+..+..|+..|++++..|++++.
T Consensus        97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~  134 (222)
T PRK10698         97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA  134 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888874

>PRK00846 hypothetical protein; Provisional

Probab=92.73  E-value=0.63  Score=40.49  Aligned_cols=57  Identities=19%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             hhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007170           58 KQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP  114 (615)
Q Consensus        58 Kqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~  114 (615)
                      .+.|+++|.+-|+...-|..-|++|-..+...+..|..|+..|+++.+.|+.+..+.
T Consensus         8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~   64 (77)
T PRK00846          8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL   64 (77)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            467899999999999999999999999999999999999999999999999998544

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.91  E-value=0.62  Score=40.41  Aligned_cols=54  Identities=28%  Similarity=0.439  Sum_probs=50.6

Q ss_pred             hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170           59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN  112 (615)
Q Consensus        59 qm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~  112 (615)
                      ..++++|+|.|++..-|-+-|+||-.+|-|-+-+|..+|+-||.+-.+|..++.
T Consensus         4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~   57 (72)
T COG2900           4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP   57 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            467899999999999999999999999999999999999999999999988875

>TIGR02977 phageshock_pspA phage shock protein A

Probab=91.52  E-value=8.1  Score=38.08  Aligned_cols=107  Identities=19%  Similarity=0.334  Sum_probs=67.1

Q ss_pred             CcchHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHH----HhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHH
Q 007170            1 MAESEKMVALKKAYADI--ILNTAREAAARIMASERQALR----FEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLT   74 (615)
Q Consensus         1 Maese~l~ALkkAyadi--ilntaKEAAaRVm~aERkA~~----~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl~   74 (615)
                      ++||+++  |...+-||  -|..++.+-|++|+.+++..+    ++....--.+.   +.+-|++-=|.-..+|=..-..
T Consensus        22 ~EDP~~~--l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~---A~~Al~~G~EdLAr~Al~~k~~   96 (219)
T TIGR02977        22 AEDPEKM--IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK---AELALSKGREDLARAALIEKQK   96 (219)
T ss_pred             ccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHH
Confidence            4677753  44444433  356778889999988654432    22222222222   2333444444444444445556


Q ss_pred             hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170           75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN  112 (615)
Q Consensus        75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~  112 (615)
                      .+..+..|+.|+..++..|..|+..|++.+..|+.++.
T Consensus        97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~  134 (219)
T TIGR02977        97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA  134 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888888888888888888888888888875

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.35  E-value=0.57  Score=39.07  Aligned_cols=52  Identities=23%  Similarity=0.452  Sum_probs=44.7

Q ss_pred             hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170           60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK  111 (615)
Q Consensus        60 m~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~  111 (615)
                      ||+.+|.+.|+...-+..-|++|-..+-.-+..|..|+.+|+.+.+.|..+.
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999999999999999999887

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK02793 phi X174 lysis protein; Provisional

Probab=90.50  E-value=1.6  Score=37.07  Aligned_cols=54  Identities=22%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             hchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007170           61 IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP  114 (615)
Q Consensus        61 ~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~  114 (615)
                      |+++|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++.+.|..+..+.
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~   59 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN   59 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            788999999999999999999999999999999999999999999999987655

>PRK02119 hypothetical protein; Provisional

Probab=89.81  E-value=1.9  Score=36.69  Aligned_cols=55  Identities=22%  Similarity=0.385  Sum_probs=50.5

Q ss_pred             hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007170           60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP  114 (615)
Q Consensus        60 m~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~  114 (615)
                      .|+.+|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++.+.|..+..+.
T Consensus         6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~~   60 (73)
T PRK02119          6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPSN   60 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4789999999999999999999999999999999999999999999999887543

>PRK00295 hypothetical protein; Provisional

Probab=89.01  E-value=2.7  Score=35.34  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=47.9

Q ss_pred             hchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170           61 IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN  112 (615)
Q Consensus        61 ~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~  112 (615)
                      |+++|.+-|+...-|..-|++|-..+-.-+..|..|+..|+++.+.|..+..
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~   54 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVG   54 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6788999999999999999999999999999999999999999999998873

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=88.83  E-value=20  Score=34.80  Aligned_cols=106  Identities=29%  Similarity=0.415  Sum_probs=48.1

Q ss_pred             CcchHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHH----HHHhhhhhchhhhHHHHhhHH
Q 007170            1 MAESEKMVALKKAYADII--LNTAREAAARIMASERQALRFEKDLSNTKDEALRL----LVRVKQMIDSTTKEAEITSLT   74 (615)
Q Consensus         1 Maese~l~ALkkAyadii--lntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~----LlRLKqm~Daki~EaE~~sl~   74 (615)
                      |+||++  -|..++-|+-  +.-++.+.++||+.+++..+   ++..+..++-..    .+-|++-=|.-..+|=..-..
T Consensus        21 ~EDP~~--~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~---~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~   95 (221)
T PF04012_consen   21 AEDPEK--MLEQAIRDMEEQLRKARQALARVMANQKRLER---KLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD   95 (221)
T ss_pred             hcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456774  4555554443  44566777777776544322   222222211111    111222222222222222333


Q ss_pred             hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170           75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK  111 (615)
Q Consensus        75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~  111 (615)
                      ....+..|+.++..+...|..|+..|+.....|+.++
T Consensus        96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k  132 (221)
T PF04012_consen   96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK  132 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK04325 hypothetical protein; Provisional

Probab=86.49  E-value=4.3  Score=34.65  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=48.4

Q ss_pred             hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170           60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN  112 (615)
Q Consensus        60 m~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~  112 (615)
                      .|..+|.+.|+...-|..-|++|-..+-+-+..|..|+..|+++.+.|..+..
T Consensus         6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~   58 (74)
T PRK04325          6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP   58 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46788999999999999999999999999999999999999999999988764

>PRK04406 hypothetical protein; Provisional

Probab=86.35  E-value=4.2  Score=34.93  Aligned_cols=56  Identities=14%  Similarity=0.394  Sum_probs=49.7

Q ss_pred             hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007170           59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP  114 (615)
Q Consensus        59 qm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~  114 (615)
                      ..|+.+|.+.|+...-|..-|++|-..+-+-+-.|..|+.+|+++.+.|..+..+.
T Consensus         7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~   62 (75)
T PRK04406          7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSSN   62 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            36789999999999999999999999999999999999999999999998876533

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=84.30  E-value=2.1  Score=35.48  Aligned_cols=36  Identities=31%  Similarity=0.554  Sum_probs=33.1

Q ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007170           78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNN  113 (615)
Q Consensus        78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~  113 (615)
                      ||+|||..|...+-.|..+|.|+...++.+|++..+
T Consensus         1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en   36 (55)
T PF05377_consen    1 RIDELENELPRIESSINTVKKENEEISESVEKIEEN   36 (55)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998743

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]

Probab=84.27  E-value=37  Score=37.09  Aligned_cols=49  Identities=24%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhc
Q 007170           10 LKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMID   62 (615)
Q Consensus        10 LkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKqm~D   62 (615)
                      .-+||-|||-+    +--|||.+|.--.+-+-=++.+--.-|+++.||.||..
T Consensus       121 ~~~~~~evlnh----~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek  169 (426)
T KOG2008|consen  121 FDSAWQEVLNH----ATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEK  169 (426)
T ss_pred             hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688888765    44699999875555444444444556777788887653

>PRK09039 hypothetical protein; Validated

Probab=83.22  E-value=9.8  Score=40.28  Aligned_cols=69  Identities=23%  Similarity=0.242  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhhhhhhcHH---HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007170           31 ASERQALRFEKDLSNTKD---EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV  103 (615)
Q Consensus        31 ~aERkA~~~~qeL~~~Ke---eaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~  103 (615)
                      ..|.+++.++.+|...|.   |+.+.+.+|++-|++-    +-+.-.=+.-|+++|++..+++..|.+|+.+|+.+
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aL----r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAAL----RRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447778888888888775   4677788887655442    11122223345555555555555566666666555

>PRK00736 hypothetical protein; Provisional

Probab=81.85  E-value=9.3  Score=32.17  Aligned_cols=53  Identities=21%  Similarity=0.355  Sum_probs=46.9

Q ss_pred             hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170           60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN  112 (615)
Q Consensus        60 m~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~  112 (615)
                      .++.+|.+.|+...-|..-|++|-..+-.-+..|..|+..|+++.+.|+.+..
T Consensus         2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~   54 (68)
T PRK00736          2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE   54 (68)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            35678999999988889999999999999999999999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	615
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 84/574 (14%), Positives = 159/574 (27%), Gaps = 179/574 (31%)

Query: 109 KVKNNPLQPVNGQTTKEDAYSHEDVK-VEAITRSI-SNSHLEAVTACDMENSPLN--LRI 164
           + +   +  V      ++     D K V+ + +SI S   ++ +    M    ++  LR+
Sbjct: 15  QYQYKDILSVFEDAFVDNF----DCKDVQDMPKSILSKEEIDHII---MSKDAVSGTLRL 67

Query: 165 LDNRCCSTIQKTENSSDSHLEPDDHTPN---IVSTIMKEPEPFRNGCTQRIRALESNLLN 221
                     K E      +E +    N   ++S I  E          R  ++ + +  
Sbjct: 68  FWTLL----SKQEEMVQKFVE-EVLRINYKFLMSPIKTEQ---------RQPSMMTRMYI 113

Query: 222 GKLPQLGNEDGQCTPLMIEAIDKAVGKCTAPAPPPKTKNMDVTNKFSGGEVKNLVKPTSR 281
            +  +L N D Q              K       P  K   +        +  L      
Sbjct: 114 EQRDRLYN-DNQVFA-----------KYNVSRLQPYLK---LRQA-----LLEL------ 147

Query: 282 RRKTR---------FGKAKASTRRSCPDQPKIASCLSSAPSCCKTYSVNGNVKSKVSAH- 331
            R  +          GK                + +  A   C +Y V   +  K+    
Sbjct: 148 -RPAKNVLIDGVLGSGK----------------TWV--ALDVCLSYKVQCKMDFKI--FW 186

Query: 332 IRPSIKADNRDNA------KICSNLNGKLQQKRSFNEEEIK--ISQKQKENVGLQSRDSA 383
           +  ++K  N          K+   ++      RS +   IK  I   Q E   L      
Sbjct: 187 L--NLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 384 PTS-IISAPGQLINPCQASSVVNRSVIYSFAKRGNVKSSEAGLGTADNEAKMKPLLRLDP 442
               ++     L+N      V N     +F                +   K+  LL    
Sbjct: 244 ENCLLV-----LLN------VQNAKAWNAF----------------NLSCKI--LL---- 270

Query: 443 GLTLIRSGVDPVSGSKNVTVSVKALNKCGLVQKTEEKDAELKSESALVKPDG---GAVEN 499
             T  +   D +S +    +S+   +   L   T ++   L  +    +P       +  
Sbjct: 271 -TTRFKQVTDFLSAATTTHISLDHHSM-TL---TPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 500 SMVVCSELGGEVVNEPLLSD-----SKDA-----KSSIETDESPSE------------PD 537
           +    S +   + +     D     + D      +SS+     P+E            P 
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPS 384

Query: 538 FN---RVLKYTFQRKRKKDSMSNSGENTSPDKTIVKRRVTEKE---NDSQEPEKPTLIKE 591
            +    +L   +    K D M     N     ++V+++  E            K  L  E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 592 SSRHSRRVAQVARQ----------PCMDNYITFY 615
            + H   V                P +D Y   +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 92/685 (13%), Positives = 179/685 (26%), Gaps = 243/685 (35%)

Query: 39  FEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDE---------LEAQLNEA 89
           F  +  + KD        V+ M  S   + EI  +   +             L  Q    
Sbjct: 29  FVDNF-DCKD--------VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 90  EDVITD-LRSELRWVTDKLEKVKNNP-------------LQPVNGQTTKEDAYSHEDVKV 135
           +  + + LR   +++   ++  +  P             L   N    K +    +    
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PY 137

Query: 136 EAITRSISN-----------------SHLEAVTACD----MENSP-----LNLRILDNRC 169
             + +++                   + + A+  C               LNL+     C
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLK----NC 192

Query: 170 CSTIQKTENSSD--SHLEPD-----DHTPNIVSTIMKEPEPFRNGCTQRIRALESNLLNG 222
            S     E        ++P+     DH+ NI   I        +     +R L   L + 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--------HSIQAELRRL---LKSK 241

Query: 223 KLPQ----LGNEDGQCTPLMIEAIDKAVGKC----TAPAPPPKTKNMDVTNKFSGGEVKN 274
                   L             A +     C    T       T+   VT+  S     +
Sbjct: 242 PYENCLLVL---LNVQNAKAWNAFN---LSCKILLT-------TRFKQVTDFLSAATTTH 288

Query: 275 --LVKP----TSRRRKTRFGKAKASTRRSCPDQPK------------IASCLSSAPSCCK 316
             L       T    K+   K          D P+            IA  +    +   
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 317 TYS-VNGNVKSKVSAHIRPSIK----ADNR----------DNAKICSNLNGKLQQKRSFN 361
            +  VN     K++  I  S+     A+ R           +A I + L   +      +
Sbjct: 346 NWKHVN---CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 362 EEEIKISQKQKENVGLQSRDSAPTSIISAPGQLIN---PCQASSVVNRSVIYSFAKRGNV 418
           +  + +++  K    L  +     S IS P   +      +    ++RS++  +      
Sbjct: 403 DVMVVVNKLHKY--SLVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 419 KSSEAGLGTADN-----------------EAKMKPLLRLDPGLTLIRSGVDPVSGSKNVT 461
            S +      D                     +  ++ LD     +              
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLE------------- 504

Query: 462 VSVKALNKCGLVQKTEEKDAELKSESALVKPDGGAVENSMVVCSELGGEVVNEPLLSDSK 521
                       QK              ++ D  A   S        G ++N   L   K
Sbjct: 505 ------------QK--------------IRHDSTAWNAS--------GSILN--TLQQLK 528

Query: 522 DAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSNSGENT--SPDKTIVKRRVTEKEND 579
             K  I      ++P + R++          D +    EN   S    +++  +  ++  
Sbjct: 529 FYKPYI----CDNDPKYERLVNAI------LDFLPKIEENLICSKYTDLLRIALMAEDE- 577

Query: 580 SQEPEKPTLIKESSRHSRRVAQVAR 604
                   + +E+ +      QV R
Sbjct: 578 -------AIFEEAHK------QVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 51/341 (14%), Positives = 96/341 (28%), Gaps = 128/341 (37%)

Query: 12  KAYADI---ILNTAREA--AARIMASERQALRFEKDLSN-TKDEALRLLVRVKQM-IDST 64
            A+ ++   IL T R       + A+    +  +      T DE   LL++         
Sbjct: 260 NAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 65  TKEAEITSL-------------------TKQRKVDELE-------AQLNEAE-------- 90
            +E   T+                     K    D+L          L  AE        
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 91  -----DV-ITDLRSELRW----------VTDKLEK---VKNNP---------LQPVNGQT 122
                   I  +   L W          V +KL K   V+  P         +       
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 123 TKEDAYSHEDVKVEA--ITRSISNS-----------------HLEAVTACDMENSP---- 159
            + +   H  + V+   I ++  +                  HL+ +   +         
Sbjct: 439 LENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 160 LNLRILDNRCC-------------STIQKTENSSDSHLEPDDHTPN-IVSTIMKEPEPFR 205
           L+ R L+ +               +T+Q+ +     ++  +D     +V+ I+     F 
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-YICDNDPKYERLVNAILD----F- 551

Query: 206 NGCTQRIRALESNLLNGK---LPQLG--NEDGQCTPLMIEA 241
                 +  +E NL+  K   L ++    ED     +  EA
Sbjct: 552 ------LPKIEENLICSKYTDLLRIALMAEDE---AIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	615
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	93.09
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	81.57

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=93.09  E-value=1.1  Score=45.43  Aligned_cols=62  Identities=18%  Similarity=0.329  Sum_probs=35.5

Q ss_pred             HHHHHHhhhhhhcHHHH---HHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007170           34 RQALRFEKDLSNTKDEA---LRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW  102 (615)
Q Consensus        34 RkA~~~~qeL~~~Keea---L~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~  102 (615)
                      |+-.+++..+..++-+|   =++.|-|-..+|.++..       +++||+|||+++.+.+.-+.+++.|++|
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          404 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-------GQKKVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444   35677777777666544       4469999999955555545555544444

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=81.57  E-value=1.3  Score=36.63  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=27.9

Q ss_pred             HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007170           74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE  108 (615)
Q Consensus        74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE  108 (615)
                      .+.-+|.|||+.|.+..+.|+.||.+|.+.++.|.
T Consensus        22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~   56 (67)
T 1zxa_A           22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP   56 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34568999999999999999999999999888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00